Multiple sequence alignment - TraesCS1B01G124300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G124300 chr1B 100.000 2528 0 0 1 2528 150802667 150800140 0.000000e+00 4669.0
1 TraesCS1B01G124300 chr1B 86.269 772 85 18 837 1597 150665503 150664742 0.000000e+00 819.0
2 TraesCS1B01G124300 chr1B 89.474 57 5 1 653 709 284020029 284020084 1.250000e-08 71.3
3 TraesCS1B01G124300 chr1B 89.474 57 5 1 653 709 285606998 285606943 1.250000e-08 71.3
4 TraesCS1B01G124300 chr1B 89.474 57 5 1 653 709 285833474 285833529 1.250000e-08 71.3
5 TraesCS1B01G124300 chr1B 84.058 69 3 7 2288 2353 470705204 470705267 2.720000e-05 60.2
6 TraesCS1B01G124300 chr1D 96.598 823 26 2 783 1603 100897965 100898787 0.000000e+00 1363.0
7 TraesCS1B01G124300 chr1D 92.215 912 53 10 1625 2528 100900879 100901780 0.000000e+00 1275.0
8 TraesCS1B01G124300 chr1D 86.775 741 84 11 864 1597 101091988 101092721 0.000000e+00 813.0
9 TraesCS1B01G124300 chr1D 87.903 372 36 7 248 615 100897496 100897862 1.800000e-116 429.0
10 TraesCS1B01G124300 chr1D 95.050 101 5 0 696 796 230052794 230052694 2.600000e-35 159.0
11 TraesCS1B01G124300 chr1D 100.000 30 0 0 586 615 198901805 198901776 3.510000e-04 56.5
12 TraesCS1B01G124300 chr1A 95.307 831 33 4 781 1609 104438556 104437730 0.000000e+00 1314.0
13 TraesCS1B01G124300 chr1A 85.996 914 93 18 1627 2528 104435734 104434844 0.000000e+00 946.0
14 TraesCS1B01G124300 chr1A 86.951 774 78 18 837 1597 104380827 104380064 0.000000e+00 848.0
15 TraesCS1B01G124300 chr1A 89.785 372 31 5 248 615 104439025 104438657 1.060000e-128 470.0
16 TraesCS1B01G124300 chr3B 94.444 108 5 1 693 800 647816560 647816666 5.590000e-37 165.0
17 TraesCS1B01G124300 chr2B 95.192 104 5 0 692 795 774087957 774087854 5.590000e-37 165.0
18 TraesCS1B01G124300 chr2B 94.340 106 5 1 696 801 242173848 242173744 7.240000e-36 161.0
19 TraesCS1B01G124300 chr5B 93.636 110 6 1 696 805 701174757 701174649 2.010000e-36 163.0
20 TraesCS1B01G124300 chr5B 94.286 105 6 0 692 796 455737605 455737501 7.240000e-36 161.0
21 TraesCS1B01G124300 chr6B 92.661 109 8 0 698 806 14820581 14820689 9.360000e-35 158.0
22 TraesCS1B01G124300 chr6B 88.462 78 2 2 660 730 163967978 163967901 1.250000e-13 87.9
23 TraesCS1B01G124300 chr6B 100.000 31 0 0 585 615 585813539 585813509 9.770000e-05 58.4
24 TraesCS1B01G124300 chr4A 92.035 113 6 3 696 806 69316826 69316937 3.370000e-34 156.0
25 TraesCS1B01G124300 chr4D 89.256 121 11 2 696 815 497135733 497135614 1.570000e-32 150.0
26 TraesCS1B01G124300 chr4D 89.583 48 4 1 2297 2343 298905906 298905859 2.720000e-05 60.2
27 TraesCS1B01G124300 chr3D 89.773 88 7 2 641 726 422753831 422753744 7.390000e-21 111.0
28 TraesCS1B01G124300 chr3D 97.143 35 1 0 581 615 326696950 326696984 2.720000e-05 60.2
29 TraesCS1B01G124300 chr3D 90.476 42 1 3 2291 2331 404545698 404545737 5.000000e-03 52.8
30 TraesCS1B01G124300 chr5D 100.000 39 0 0 660 698 134916542 134916580 3.490000e-09 73.1
31 TraesCS1B01G124300 chr5D 96.970 33 1 0 583 615 264494442 264494474 3.510000e-04 56.5
32 TraesCS1B01G124300 chr7B 93.750 48 0 1 660 707 430829565 430829521 4.510000e-08 69.4
33 TraesCS1B01G124300 chr3A 87.500 64 1 3 641 697 277504161 277504098 1.620000e-07 67.6
34 TraesCS1B01G124300 chr3A 86.567 67 2 4 638 697 277504113 277504179 1.620000e-07 67.6
35 TraesCS1B01G124300 chr3A 97.143 35 1 0 581 615 438607909 438607875 2.720000e-05 60.2
36 TraesCS1B01G124300 chr7A 100.000 33 0 0 583 615 574129412 574129380 7.550000e-06 62.1
37 TraesCS1B01G124300 chr6D 100.000 31 0 0 585 615 392281612 392281582 9.770000e-05 58.4
38 TraesCS1B01G124300 chr2A 81.429 70 9 4 2120 2187 770212034 770212101 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G124300 chr1B 150800140 150802667 2527 True 4669.000000 4669 100.000000 1 2528 1 chr1B.!!$R2 2527
1 TraesCS1B01G124300 chr1B 150664742 150665503 761 True 819.000000 819 86.269000 837 1597 1 chr1B.!!$R1 760
2 TraesCS1B01G124300 chr1D 100897496 100901780 4284 False 1022.333333 1363 92.238667 248 2528 3 chr1D.!!$F2 2280
3 TraesCS1B01G124300 chr1D 101091988 101092721 733 False 813.000000 813 86.775000 864 1597 1 chr1D.!!$F1 733
4 TraesCS1B01G124300 chr1A 104434844 104439025 4181 True 910.000000 1314 90.362667 248 2528 3 chr1A.!!$R2 2280
5 TraesCS1B01G124300 chr1A 104380064 104380827 763 True 848.000000 848 86.951000 837 1597 1 chr1A.!!$R1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.248866 CAACACAGGGTCCAAAACGC 60.249 55.0 0.0 0.0 41.01 4.84 F
124 125 0.248990 CAAAACGCTGGTGCATGTGT 60.249 50.0 0.0 0.0 39.64 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1535 3.628646 GATCACAGCGGCCCAAGGT 62.629 63.158 0.0 0.0 0.00 3.50 R
1952 5373 7.013274 CGATGAATACAAAAGGTGTTATGGGAT 59.987 37.037 0.0 0.0 41.98 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.833478 AGAACATAGCAACAGATGTCCT 57.167 40.909 0.00 0.00 35.21 3.85
22 23 4.764172 AGAACATAGCAACAGATGTCCTC 58.236 43.478 0.00 0.00 35.21 3.71
23 24 4.469227 AGAACATAGCAACAGATGTCCTCT 59.531 41.667 0.00 0.00 35.21 3.69
24 25 4.399004 ACATAGCAACAGATGTCCTCTC 57.601 45.455 0.00 0.00 30.32 3.20
25 26 4.029520 ACATAGCAACAGATGTCCTCTCT 58.970 43.478 0.00 0.00 30.32 3.10
26 27 5.204292 ACATAGCAACAGATGTCCTCTCTA 58.796 41.667 0.00 0.00 30.32 2.43
27 28 5.068460 ACATAGCAACAGATGTCCTCTCTAC 59.932 44.000 0.00 0.00 30.32 2.59
28 29 3.707316 AGCAACAGATGTCCTCTCTACT 58.293 45.455 0.00 0.00 29.16 2.57
29 30 3.446873 AGCAACAGATGTCCTCTCTACTG 59.553 47.826 0.00 0.00 29.16 2.74
30 31 3.779759 CAACAGATGTCCTCTCTACTGC 58.220 50.000 0.00 0.00 29.16 4.40
31 32 3.380471 ACAGATGTCCTCTCTACTGCT 57.620 47.619 0.00 0.00 29.16 4.24
32 33 3.023119 ACAGATGTCCTCTCTACTGCTG 58.977 50.000 0.00 0.00 29.16 4.41
33 34 3.286353 CAGATGTCCTCTCTACTGCTGA 58.714 50.000 0.00 0.00 29.16 4.26
34 35 3.066621 CAGATGTCCTCTCTACTGCTGAC 59.933 52.174 0.00 0.00 29.16 3.51
35 36 2.889170 TGTCCTCTCTACTGCTGACT 57.111 50.000 0.00 0.00 0.00 3.41
36 37 3.162147 TGTCCTCTCTACTGCTGACTT 57.838 47.619 0.00 0.00 0.00 3.01
37 38 2.822561 TGTCCTCTCTACTGCTGACTTG 59.177 50.000 0.00 0.00 0.00 3.16
38 39 3.085533 GTCCTCTCTACTGCTGACTTGA 58.914 50.000 0.00 0.00 0.00 3.02
39 40 3.128589 GTCCTCTCTACTGCTGACTTGAG 59.871 52.174 0.00 0.30 0.00 3.02
40 41 3.009584 TCCTCTCTACTGCTGACTTGAGA 59.990 47.826 0.00 4.02 0.00 3.27
41 42 3.761218 CCTCTCTACTGCTGACTTGAGAA 59.239 47.826 0.00 0.00 31.41 2.87
42 43 4.402155 CCTCTCTACTGCTGACTTGAGAAT 59.598 45.833 0.00 0.00 31.41 2.40
43 44 5.592282 CCTCTCTACTGCTGACTTGAGAATA 59.408 44.000 0.00 0.00 31.41 1.75
44 45 6.238731 CCTCTCTACTGCTGACTTGAGAATAG 60.239 46.154 0.00 0.00 31.41 1.73
45 46 5.592282 TCTCTACTGCTGACTTGAGAATAGG 59.408 44.000 0.00 0.00 0.00 2.57
46 47 3.258971 ACTGCTGACTTGAGAATAGGC 57.741 47.619 0.00 0.00 0.00 3.93
47 48 2.568956 ACTGCTGACTTGAGAATAGGCA 59.431 45.455 0.00 0.00 0.00 4.75
48 49 3.008375 ACTGCTGACTTGAGAATAGGCAA 59.992 43.478 0.00 0.00 28.26 4.52
49 50 4.005650 CTGCTGACTTGAGAATAGGCAAA 58.994 43.478 0.00 0.00 28.26 3.68
50 51 4.592942 TGCTGACTTGAGAATAGGCAAAT 58.407 39.130 0.00 0.00 28.26 2.32
51 52 4.397103 TGCTGACTTGAGAATAGGCAAATG 59.603 41.667 0.00 0.00 28.26 2.32
52 53 4.637534 GCTGACTTGAGAATAGGCAAATGA 59.362 41.667 0.00 0.00 28.26 2.57
53 54 5.124457 GCTGACTTGAGAATAGGCAAATGAA 59.876 40.000 0.00 0.00 28.26 2.57
54 55 6.500684 TGACTTGAGAATAGGCAAATGAAC 57.499 37.500 0.00 0.00 0.00 3.18
55 56 6.240894 TGACTTGAGAATAGGCAAATGAACT 58.759 36.000 0.00 0.00 0.00 3.01
56 57 7.394016 TGACTTGAGAATAGGCAAATGAACTA 58.606 34.615 0.00 0.00 0.00 2.24
57 58 7.550551 TGACTTGAGAATAGGCAAATGAACTAG 59.449 37.037 0.00 0.00 0.00 2.57
58 59 6.317391 ACTTGAGAATAGGCAAATGAACTAGC 59.683 38.462 0.00 0.00 0.00 3.42
59 60 5.994250 TGAGAATAGGCAAATGAACTAGCT 58.006 37.500 0.00 0.00 0.00 3.32
60 61 5.819379 TGAGAATAGGCAAATGAACTAGCTG 59.181 40.000 0.00 0.00 0.00 4.24
61 62 5.994250 AGAATAGGCAAATGAACTAGCTGA 58.006 37.500 0.00 0.00 0.00 4.26
62 63 6.054295 AGAATAGGCAAATGAACTAGCTGAG 58.946 40.000 0.00 0.00 0.00 3.35
63 64 3.988976 AGGCAAATGAACTAGCTGAGA 57.011 42.857 0.00 0.00 0.00 3.27
64 65 3.604582 AGGCAAATGAACTAGCTGAGAC 58.395 45.455 0.00 0.00 0.00 3.36
65 66 3.008375 AGGCAAATGAACTAGCTGAGACA 59.992 43.478 0.00 0.00 0.00 3.41
66 67 3.753272 GGCAAATGAACTAGCTGAGACAA 59.247 43.478 0.00 0.00 0.00 3.18
67 68 4.216257 GGCAAATGAACTAGCTGAGACAAA 59.784 41.667 0.00 0.00 0.00 2.83
68 69 5.149977 GCAAATGAACTAGCTGAGACAAAC 58.850 41.667 0.00 0.00 0.00 2.93
69 70 5.049129 GCAAATGAACTAGCTGAGACAAACT 60.049 40.000 0.00 0.00 0.00 2.66
70 71 6.514048 GCAAATGAACTAGCTGAGACAAACTT 60.514 38.462 0.00 0.00 0.00 2.66
71 72 6.551385 AATGAACTAGCTGAGACAAACTTG 57.449 37.500 0.00 0.00 0.00 3.16
72 73 5.023533 TGAACTAGCTGAGACAAACTTGT 57.976 39.130 0.00 0.00 45.65 3.16
85 86 5.034554 ACAAACTTGTCTATGCAATGACG 57.965 39.130 14.78 6.80 36.50 4.35
86 87 3.747099 AACTTGTCTATGCAATGACGC 57.253 42.857 14.78 0.00 36.10 5.19
87 88 2.977914 ACTTGTCTATGCAATGACGCT 58.022 42.857 14.78 1.18 36.10 5.07
88 89 2.674852 ACTTGTCTATGCAATGACGCTG 59.325 45.455 14.78 10.65 36.10 5.18
89 90 1.009078 TGTCTATGCAATGACGCTGC 58.991 50.000 14.78 0.00 40.35 5.25
93 94 3.256936 TGCAATGACGCTGCAGAC 58.743 55.556 20.43 8.06 44.67 3.51
94 95 1.597578 TGCAATGACGCTGCAGACA 60.598 52.632 20.43 14.18 44.67 3.41
95 96 1.165284 TGCAATGACGCTGCAGACAA 61.165 50.000 20.43 0.00 44.67 3.18
96 97 0.727122 GCAATGACGCTGCAGACAAC 60.727 55.000 20.43 5.80 39.69 3.32
97 98 0.587768 CAATGACGCTGCAGACAACA 59.412 50.000 20.43 11.57 0.00 3.33
98 99 0.588252 AATGACGCTGCAGACAACAC 59.412 50.000 20.43 0.00 0.00 3.32
99 100 0.532640 ATGACGCTGCAGACAACACA 60.533 50.000 20.43 8.30 0.00 3.72
100 101 1.153597 TGACGCTGCAGACAACACAG 61.154 55.000 20.43 0.00 34.48 3.66
101 102 1.835483 GACGCTGCAGACAACACAGG 61.835 60.000 20.43 0.00 31.94 4.00
102 103 2.610694 CGCTGCAGACAACACAGGG 61.611 63.158 20.43 0.00 37.91 4.45
103 104 1.526917 GCTGCAGACAACACAGGGT 60.527 57.895 20.43 0.00 31.94 4.34
104 105 1.510480 GCTGCAGACAACACAGGGTC 61.510 60.000 20.43 0.00 31.94 4.46
105 106 0.886490 CTGCAGACAACACAGGGTCC 60.886 60.000 8.42 0.00 34.58 4.46
106 107 1.148273 GCAGACAACACAGGGTCCA 59.852 57.895 0.00 0.00 34.58 4.02
107 108 0.465460 GCAGACAACACAGGGTCCAA 60.465 55.000 0.00 0.00 34.58 3.53
108 109 2.021723 GCAGACAACACAGGGTCCAAA 61.022 52.381 0.00 0.00 34.58 3.28
109 110 2.374184 CAGACAACACAGGGTCCAAAA 58.626 47.619 0.00 0.00 34.58 2.44
110 111 2.099098 CAGACAACACAGGGTCCAAAAC 59.901 50.000 0.00 0.00 34.58 2.43
111 112 1.064952 GACAACACAGGGTCCAAAACG 59.935 52.381 0.00 0.00 0.00 3.60
112 113 0.248866 CAACACAGGGTCCAAAACGC 60.249 55.000 0.00 0.00 41.01 4.84
117 118 3.039134 GGGTCCAAAACGCTGGTG 58.961 61.111 0.00 0.00 37.74 4.17
118 119 2.335011 GGTCCAAAACGCTGGTGC 59.665 61.111 0.00 0.00 37.74 5.01
119 120 2.485795 GGTCCAAAACGCTGGTGCA 61.486 57.895 0.00 0.00 39.64 4.57
120 121 1.659794 GTCCAAAACGCTGGTGCAT 59.340 52.632 0.00 0.00 39.64 3.96
121 122 0.664166 GTCCAAAACGCTGGTGCATG 60.664 55.000 0.00 0.00 39.64 4.06
122 123 1.106351 TCCAAAACGCTGGTGCATGT 61.106 50.000 0.00 0.00 39.64 3.21
123 124 0.940519 CCAAAACGCTGGTGCATGTG 60.941 55.000 0.00 0.00 39.64 3.21
124 125 0.248990 CAAAACGCTGGTGCATGTGT 60.249 50.000 0.00 0.00 39.64 3.72
125 126 0.248990 AAAACGCTGGTGCATGTGTG 60.249 50.000 0.00 0.00 39.64 3.82
137 138 1.693467 CATGTGTGCATGTCAAGTGC 58.307 50.000 0.00 0.00 45.48 4.40
141 142 4.139510 TGCATGTCAAGTGCACGT 57.860 50.000 12.01 5.01 46.76 4.49
142 143 3.297391 TGCATGTCAAGTGCACGTA 57.703 47.368 12.01 0.00 46.76 3.57
143 144 1.147473 TGCATGTCAAGTGCACGTAG 58.853 50.000 12.01 5.52 46.76 3.51
144 145 1.270041 TGCATGTCAAGTGCACGTAGA 60.270 47.619 12.01 8.01 46.76 2.59
145 146 1.391485 GCATGTCAAGTGCACGTAGAG 59.609 52.381 12.01 0.94 42.08 2.43
146 147 1.995484 CATGTCAAGTGCACGTAGAGG 59.005 52.381 12.01 0.00 0.00 3.69
147 148 1.037493 TGTCAAGTGCACGTAGAGGT 58.963 50.000 12.01 0.00 0.00 3.85
148 149 1.269569 TGTCAAGTGCACGTAGAGGTG 60.270 52.381 12.01 2.70 40.89 4.00
149 150 1.037493 TCAAGTGCACGTAGAGGTGT 58.963 50.000 12.01 0.00 40.08 4.16
150 151 1.411246 TCAAGTGCACGTAGAGGTGTT 59.589 47.619 12.01 0.00 40.08 3.32
151 152 2.159014 TCAAGTGCACGTAGAGGTGTTT 60.159 45.455 12.01 0.00 40.08 2.83
152 153 1.865865 AGTGCACGTAGAGGTGTTTG 58.134 50.000 12.01 0.00 40.08 2.93
153 154 1.411246 AGTGCACGTAGAGGTGTTTGA 59.589 47.619 12.01 0.00 40.08 2.69
154 155 2.037251 AGTGCACGTAGAGGTGTTTGAT 59.963 45.455 12.01 0.00 40.08 2.57
155 156 2.806244 GTGCACGTAGAGGTGTTTGATT 59.194 45.455 0.00 0.00 40.08 2.57
156 157 2.805671 TGCACGTAGAGGTGTTTGATTG 59.194 45.455 4.46 0.00 40.08 2.67
157 158 2.412847 GCACGTAGAGGTGTTTGATTGC 60.413 50.000 4.46 0.00 40.08 3.56
158 159 3.067106 CACGTAGAGGTGTTTGATTGCT 58.933 45.455 0.00 0.00 33.24 3.91
159 160 3.067106 ACGTAGAGGTGTTTGATTGCTG 58.933 45.455 0.00 0.00 0.00 4.41
160 161 3.244078 ACGTAGAGGTGTTTGATTGCTGA 60.244 43.478 0.00 0.00 0.00 4.26
161 162 3.369147 CGTAGAGGTGTTTGATTGCTGAG 59.631 47.826 0.00 0.00 0.00 3.35
162 163 2.157738 AGAGGTGTTTGATTGCTGAGC 58.842 47.619 0.00 0.00 0.00 4.26
163 164 2.157738 GAGGTGTTTGATTGCTGAGCT 58.842 47.619 5.83 0.00 0.00 4.09
164 165 1.884579 AGGTGTTTGATTGCTGAGCTG 59.115 47.619 5.83 0.00 0.00 4.24
165 166 1.610522 GGTGTTTGATTGCTGAGCTGT 59.389 47.619 5.83 0.00 0.00 4.40
166 167 2.813754 GGTGTTTGATTGCTGAGCTGTA 59.186 45.455 5.83 0.00 0.00 2.74
167 168 3.120060 GGTGTTTGATTGCTGAGCTGTAG 60.120 47.826 5.83 0.00 0.00 2.74
168 169 3.499918 GTGTTTGATTGCTGAGCTGTAGT 59.500 43.478 5.83 0.00 0.00 2.73
169 170 4.023707 GTGTTTGATTGCTGAGCTGTAGTT 60.024 41.667 5.83 0.00 0.00 2.24
170 171 4.023792 TGTTTGATTGCTGAGCTGTAGTTG 60.024 41.667 5.83 0.00 0.00 3.16
171 172 2.079158 TGATTGCTGAGCTGTAGTTGC 58.921 47.619 5.83 0.00 0.00 4.17
172 173 2.079158 GATTGCTGAGCTGTAGTTGCA 58.921 47.619 5.83 0.00 0.00 4.08
173 174 2.189594 TTGCTGAGCTGTAGTTGCAT 57.810 45.000 5.83 0.00 0.00 3.96
174 175 2.189594 TGCTGAGCTGTAGTTGCATT 57.810 45.000 5.83 0.00 0.00 3.56
175 176 1.808343 TGCTGAGCTGTAGTTGCATTG 59.192 47.619 5.83 0.00 0.00 2.82
176 177 1.131883 GCTGAGCTGTAGTTGCATTGG 59.868 52.381 0.00 0.00 0.00 3.16
177 178 2.430465 CTGAGCTGTAGTTGCATTGGT 58.570 47.619 0.00 0.00 0.00 3.67
178 179 2.816087 CTGAGCTGTAGTTGCATTGGTT 59.184 45.455 0.00 0.00 0.00 3.67
179 180 4.002982 CTGAGCTGTAGTTGCATTGGTTA 58.997 43.478 0.00 0.00 0.00 2.85
180 181 4.393834 TGAGCTGTAGTTGCATTGGTTAA 58.606 39.130 0.00 0.00 0.00 2.01
181 182 4.824537 TGAGCTGTAGTTGCATTGGTTAAA 59.175 37.500 0.00 0.00 0.00 1.52
182 183 5.476599 TGAGCTGTAGTTGCATTGGTTAAAT 59.523 36.000 0.00 0.00 0.00 1.40
198 199 5.034797 GGTTAAATGAGAACCGCTTTATGC 58.965 41.667 0.00 0.00 37.22 3.14
199 200 3.782889 AAATGAGAACCGCTTTATGCC 57.217 42.857 0.00 0.00 38.78 4.40
200 201 2.418368 ATGAGAACCGCTTTATGCCA 57.582 45.000 0.00 0.00 38.78 4.92
201 202 2.418368 TGAGAACCGCTTTATGCCAT 57.582 45.000 0.00 0.00 38.78 4.40
202 203 2.722094 TGAGAACCGCTTTATGCCATT 58.278 42.857 0.00 0.00 38.78 3.16
203 204 3.879998 TGAGAACCGCTTTATGCCATTA 58.120 40.909 0.00 0.00 38.78 1.90
204 205 3.876914 TGAGAACCGCTTTATGCCATTAG 59.123 43.478 0.00 0.00 38.78 1.73
205 206 2.618709 AGAACCGCTTTATGCCATTAGC 59.381 45.455 2.39 2.39 44.14 3.09
217 218 2.609350 GCCATTAGCACACAATGTTGG 58.391 47.619 0.00 0.00 42.97 3.77
218 219 2.230992 GCCATTAGCACACAATGTTGGA 59.769 45.455 2.49 0.00 42.97 3.53
219 220 3.674138 GCCATTAGCACACAATGTTGGAG 60.674 47.826 2.49 0.00 42.97 3.86
220 221 3.507233 CCATTAGCACACAATGTTGGAGT 59.493 43.478 0.00 0.00 32.55 3.85
221 222 4.699735 CCATTAGCACACAATGTTGGAGTA 59.300 41.667 0.00 0.00 32.55 2.59
222 223 5.391950 CCATTAGCACACAATGTTGGAGTAC 60.392 44.000 0.00 0.00 32.55 2.73
223 224 2.504367 AGCACACAATGTTGGAGTACC 58.496 47.619 0.00 0.00 0.00 3.34
224 225 2.158682 AGCACACAATGTTGGAGTACCA 60.159 45.455 0.00 0.00 45.34 3.25
225 226 2.819608 GCACACAATGTTGGAGTACCAT 59.180 45.455 0.00 0.00 46.34 3.55
226 227 3.255642 GCACACAATGTTGGAGTACCATT 59.744 43.478 0.00 0.00 46.34 3.16
227 228 4.457603 GCACACAATGTTGGAGTACCATTA 59.542 41.667 0.00 0.00 46.34 1.90
228 229 5.125417 GCACACAATGTTGGAGTACCATTAT 59.875 40.000 0.00 0.00 46.34 1.28
229 230 6.317642 GCACACAATGTTGGAGTACCATTATA 59.682 38.462 0.00 0.00 46.34 0.98
230 231 7.013274 GCACACAATGTTGGAGTACCATTATAT 59.987 37.037 0.00 0.00 46.34 0.86
231 232 8.902806 CACACAATGTTGGAGTACCATTATATT 58.097 33.333 0.00 0.00 46.34 1.28
241 242 9.991906 TGGAGTACCATTATATTAACTAGTTGC 57.008 33.333 18.56 0.00 41.77 4.17
242 243 9.136952 GGAGTACCATTATATTAACTAGTTGCG 57.863 37.037 18.56 0.00 35.97 4.85
243 244 9.688592 GAGTACCATTATATTAACTAGTTGCGT 57.311 33.333 18.56 6.44 0.00 5.24
244 245 9.688592 AGTACCATTATATTAACTAGTTGCGTC 57.311 33.333 18.56 0.00 0.00 5.19
245 246 9.467258 GTACCATTATATTAACTAGTTGCGTCA 57.533 33.333 18.56 0.00 0.00 4.35
246 247 8.589335 ACCATTATATTAACTAGTTGCGTCAG 57.411 34.615 18.56 1.77 0.00 3.51
260 261 4.902443 TGCGTCAGTTGTTTTGGATTTA 57.098 36.364 0.00 0.00 0.00 1.40
264 265 5.173131 GCGTCAGTTGTTTTGGATTTACTTG 59.827 40.000 0.00 0.00 0.00 3.16
270 271 8.930760 CAGTTGTTTTGGATTTACTTGTTTTCA 58.069 29.630 0.00 0.00 0.00 2.69
271 272 9.150348 AGTTGTTTTGGATTTACTTGTTTTCAG 57.850 29.630 0.00 0.00 0.00 3.02
302 303 2.093306 TGTATTGAGGTTGGTGCGAG 57.907 50.000 0.00 0.00 0.00 5.03
303 304 0.727398 GTATTGAGGTTGGTGCGAGC 59.273 55.000 0.00 0.00 0.00 5.03
312 313 2.423538 GGTTGGTGCGAGCTTTTCATAT 59.576 45.455 0.00 0.00 0.00 1.78
344 345 7.145323 GCTTCAGCACTATTCTTTTGGTAAAA 58.855 34.615 0.00 0.00 41.59 1.52
372 373 9.972106 TTTTATAATTTGGCAAATTGATCCCTT 57.028 25.926 36.22 18.72 41.01 3.95
381 382 7.330262 TGGCAAATTGATCCCTTTTTAGAATC 58.670 34.615 0.00 0.00 0.00 2.52
382 383 6.476706 GGCAAATTGATCCCTTTTTAGAATCG 59.523 38.462 0.00 0.00 0.00 3.34
390 391 6.790285 TCCCTTTTTAGAATCGTTGTGTAC 57.210 37.500 0.00 0.00 0.00 2.90
409 410 6.753279 TGTGTACGTTATACAGCAAATAGGTC 59.247 38.462 0.00 0.00 0.00 3.85
423 424 7.554118 CAGCAAATAGGTCTAAATTCCTGAGAA 59.446 37.037 0.00 0.00 35.51 2.87
425 426 9.561069 GCAAATAGGTCTAAATTCCTGAGAATA 57.439 33.333 0.00 0.00 42.03 1.75
456 457 9.941325 ATTCACAGCAAATAAAAACCATGAATA 57.059 25.926 0.00 0.00 32.73 1.75
478 479 2.424601 TGAGCTTTCATTGTAGCATGCC 59.575 45.455 15.66 0.00 39.85 4.40
522 523 7.514721 TCTAGAAAAAGTAGAAACACCATGGT 58.485 34.615 13.00 13.00 0.00 3.55
559 562 8.088981 TGTAGGAAATCTCAAGTAGAAACACTC 58.911 37.037 0.00 0.00 37.89 3.51
562 565 6.370166 GGAAATCTCAAGTAGAAACACTCTGG 59.630 42.308 0.00 0.00 37.89 3.86
565 568 2.703536 TCAAGTAGAAACACTCTGGCCA 59.296 45.455 4.71 4.71 35.41 5.36
566 569 3.070018 CAAGTAGAAACACTCTGGCCAG 58.930 50.000 27.87 27.87 35.41 4.85
567 570 1.002544 AGTAGAAACACTCTGGCCAGC 59.997 52.381 28.91 12.07 35.41 4.85
569 572 0.403271 AGAAACACTCTGGCCAGCAT 59.597 50.000 28.91 15.38 31.12 3.79
600 604 5.374921 CTCTTTACTACTACCTCCGATCCA 58.625 45.833 0.00 0.00 0.00 3.41
601 605 5.950023 TCTTTACTACTACCTCCGATCCAT 58.050 41.667 0.00 0.00 0.00 3.41
602 606 7.083062 TCTTTACTACTACCTCCGATCCATA 57.917 40.000 0.00 0.00 0.00 2.74
603 607 7.520798 TCTTTACTACTACCTCCGATCCATAA 58.479 38.462 0.00 0.00 0.00 1.90
604 608 8.168725 TCTTTACTACTACCTCCGATCCATAAT 58.831 37.037 0.00 0.00 0.00 1.28
605 609 9.458727 CTTTACTACTACCTCCGATCCATAATA 57.541 37.037 0.00 0.00 0.00 0.98
606 610 9.812347 TTTACTACTACCTCCGATCCATAATAA 57.188 33.333 0.00 0.00 0.00 1.40
607 611 7.941431 ACTACTACCTCCGATCCATAATAAG 57.059 40.000 0.00 0.00 0.00 1.73
608 612 7.468496 ACTACTACCTCCGATCCATAATAAGT 58.532 38.462 0.00 0.00 0.00 2.24
609 613 6.591750 ACTACCTCCGATCCATAATAAGTG 57.408 41.667 0.00 0.00 0.00 3.16
610 614 6.075984 ACTACCTCCGATCCATAATAAGTGT 58.924 40.000 0.00 0.00 0.00 3.55
611 615 5.470047 ACCTCCGATCCATAATAAGTGTC 57.530 43.478 0.00 0.00 0.00 3.67
612 616 4.022242 ACCTCCGATCCATAATAAGTGTCG 60.022 45.833 0.00 0.00 0.00 4.35
613 617 3.909430 TCCGATCCATAATAAGTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
614 618 3.319689 TCCGATCCATAATAAGTGTCGCA 59.680 43.478 0.00 0.00 0.00 5.10
615 619 4.021456 TCCGATCCATAATAAGTGTCGCAT 60.021 41.667 0.00 0.00 0.00 4.73
616 620 5.184287 TCCGATCCATAATAAGTGTCGCATA 59.816 40.000 0.00 0.00 0.00 3.14
617 621 5.288712 CCGATCCATAATAAGTGTCGCATAC 59.711 44.000 0.00 0.00 0.00 2.39
618 622 6.093404 CGATCCATAATAAGTGTCGCATACT 58.907 40.000 0.00 0.00 0.00 2.12
619 623 6.251589 CGATCCATAATAAGTGTCGCATACTC 59.748 42.308 0.00 0.00 0.00 2.59
620 624 6.650427 TCCATAATAAGTGTCGCATACTCT 57.350 37.500 0.00 0.00 33.35 3.24
621 625 7.050970 TCCATAATAAGTGTCGCATACTCTT 57.949 36.000 8.15 8.15 42.85 2.85
622 626 6.923508 TCCATAATAAGTGTCGCATACTCTTG 59.076 38.462 11.67 0.00 41.00 3.02
623 627 6.346919 CCATAATAAGTGTCGCATACTCTTGC 60.347 42.308 11.67 0.00 41.00 4.01
635 639 6.583912 GCATACTCTTGCGTATTCTACAAA 57.416 37.500 0.00 0.00 32.06 2.83
636 640 7.000575 GCATACTCTTGCGTATTCTACAAAA 57.999 36.000 0.00 0.00 32.06 2.44
637 641 7.461107 GCATACTCTTGCGTATTCTACAAAAA 58.539 34.615 0.00 0.00 32.06 1.94
639 643 9.988350 CATACTCTTGCGTATTCTACAAAAATT 57.012 29.630 0.00 0.00 0.00 1.82
656 660 8.280909 ACAAAAATTATAAGTGTCGCAGTTTG 57.719 30.769 5.46 3.65 0.00 2.93
657 661 8.132362 ACAAAAATTATAAGTGTCGCAGTTTGA 58.868 29.630 9.64 0.00 0.00 2.69
672 687 4.317348 GCAGTTTGAATTCAAAACTGCGAC 60.317 41.667 37.54 26.39 46.80 5.19
680 695 7.866729 TGAATTCAAAACTGCGACACTTATTA 58.133 30.769 5.45 0.00 0.00 0.98
688 703 3.649073 TGCGACACTTATTATGGATCGG 58.351 45.455 0.00 0.00 0.00 4.18
692 707 4.022242 CGACACTTATTATGGATCGGAGGT 60.022 45.833 0.00 0.00 0.00 3.85
707 722 1.965935 GAGGTAGTACTCCCTCCGTC 58.034 60.000 21.08 0.00 41.22 4.79
708 723 0.550432 AGGTAGTACTCCCTCCGTCC 59.450 60.000 0.11 0.00 0.00 4.79
709 724 0.467106 GGTAGTACTCCCTCCGTCCC 60.467 65.000 0.00 0.00 0.00 4.46
710 725 0.257039 GTAGTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
716 731 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
717 732 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
718 733 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
720 735 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
721 736 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
722 737 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
723 738 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
724 739 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
725 740 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
726 741 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
727 742 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
728 743 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
729 744 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
730 745 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
731 746 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
737 752 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
739 754 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
741 756 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
742 757 7.230913 AGTGTCTCAACTTTGTACTAGCTCTAA 59.769 37.037 0.00 0.00 0.00 2.10
743 758 8.030106 GTGTCTCAACTTTGTACTAGCTCTAAT 58.970 37.037 0.00 0.00 0.00 1.73
744 759 9.239551 TGTCTCAACTTTGTACTAGCTCTAATA 57.760 33.333 0.00 0.00 0.00 0.98
745 760 9.505995 GTCTCAACTTTGTACTAGCTCTAATAC 57.494 37.037 0.00 0.00 0.00 1.89
746 761 9.239551 TCTCAACTTTGTACTAGCTCTAATACA 57.760 33.333 0.00 0.00 0.00 2.29
747 762 9.856488 CTCAACTTTGTACTAGCTCTAATACAA 57.144 33.333 6.81 6.81 36.39 2.41
755 770 8.879759 TGTACTAGCTCTAATACAAATTTGTGC 58.120 33.333 29.72 22.84 42.31 4.57
756 771 9.099454 GTACTAGCTCTAATACAAATTTGTGCT 57.901 33.333 29.72 27.31 44.27 4.40
758 773 9.667107 ACTAGCTCTAATACAAATTTGTGCTAA 57.333 29.630 29.72 13.30 43.06 3.09
760 775 7.475840 AGCTCTAATACAAATTTGTGCTAAGC 58.524 34.615 29.72 26.62 42.08 3.09
761 776 7.337942 AGCTCTAATACAAATTTGTGCTAAGCT 59.662 33.333 29.72 27.93 42.08 3.74
762 777 7.641802 GCTCTAATACAAATTTGTGCTAAGCTC 59.358 37.037 29.72 11.56 42.31 4.09
763 778 8.560355 TCTAATACAAATTTGTGCTAAGCTCA 57.440 30.769 29.72 10.16 42.31 4.26
764 779 9.008965 TCTAATACAAATTTGTGCTAAGCTCAA 57.991 29.630 29.72 9.46 42.31 3.02
765 780 9.282247 CTAATACAAATTTGTGCTAAGCTCAAG 57.718 33.333 29.72 10.94 41.75 3.02
766 781 5.772825 ACAAATTTGTGCTAAGCTCAAGA 57.227 34.783 22.71 0.00 41.75 3.02
767 782 5.523369 ACAAATTTGTGCTAAGCTCAAGAC 58.477 37.500 22.71 0.00 41.75 3.01
768 783 5.067674 ACAAATTTGTGCTAAGCTCAAGACA 59.932 36.000 22.71 0.34 41.75 3.41
769 784 5.368256 AATTTGTGCTAAGCTCAAGACAG 57.632 39.130 0.00 0.00 41.75 3.51
770 785 3.475566 TTGTGCTAAGCTCAAGACAGT 57.524 42.857 0.00 0.00 37.17 3.55
771 786 3.475566 TGTGCTAAGCTCAAGACAGTT 57.524 42.857 0.32 0.00 0.00 3.16
772 787 4.600692 TGTGCTAAGCTCAAGACAGTTA 57.399 40.909 0.32 0.00 0.00 2.24
773 788 5.152623 TGTGCTAAGCTCAAGACAGTTAT 57.847 39.130 0.32 0.00 0.00 1.89
774 789 5.551233 TGTGCTAAGCTCAAGACAGTTATT 58.449 37.500 0.32 0.00 0.00 1.40
775 790 5.997746 TGTGCTAAGCTCAAGACAGTTATTT 59.002 36.000 0.32 0.00 0.00 1.40
776 791 6.486657 TGTGCTAAGCTCAAGACAGTTATTTT 59.513 34.615 0.32 0.00 0.00 1.82
777 792 6.798959 GTGCTAAGCTCAAGACAGTTATTTTG 59.201 38.462 0.32 0.00 0.00 2.44
778 793 6.710295 TGCTAAGCTCAAGACAGTTATTTTGA 59.290 34.615 0.32 0.00 0.00 2.69
779 794 7.095060 TGCTAAGCTCAAGACAGTTATTTTGAG 60.095 37.037 8.33 8.33 45.75 3.02
787 802 4.527038 AGACAGTTATTTTGAGACGGAGGA 59.473 41.667 0.00 0.00 0.00 3.71
809 824 9.989869 GAGGAAGTAGTATTTTATTTGTTGCTC 57.010 33.333 0.00 0.00 0.00 4.26
826 841 8.984891 TTGTTGCTCATAGTTTGATTTAATGG 57.015 30.769 0.00 0.00 32.72 3.16
839 854 7.470289 TTGATTTAATGGTTGTTTTTGGACG 57.530 32.000 0.00 0.00 0.00 4.79
1377 1401 2.165845 GAGCGACTACAAGTACATGGGT 59.834 50.000 2.78 1.21 0.00 4.51
1511 1535 0.529773 GCGACGATGGCTGGTGATTA 60.530 55.000 0.00 0.00 0.00 1.75
1566 1591 0.174845 CATGCATGGTCCCTGCTTTG 59.825 55.000 19.40 12.65 40.34 2.77
1609 1820 3.053768 TGATTGGATGGGTCTGCAATGTA 60.054 43.478 0.00 0.00 0.00 2.29
1677 5094 9.784680 TCACAAACATTTTTCATGAAATTTTGG 57.215 25.926 27.48 21.51 35.01 3.28
1736 5153 7.855409 TCGTGAACATTGTTTGTATTTCTGAAG 59.145 33.333 3.08 0.00 37.68 3.02
1830 5248 5.574830 TCACAAACACTTTTTGAATTGACGG 59.425 36.000 3.81 0.00 32.96 4.79
1832 5250 6.255453 CACAAACACTTTTTGAATTGACGGAT 59.745 34.615 3.81 0.00 32.96 4.18
1952 5373 8.768957 TTTGAGTTCATGAACATTTGTTGAAA 57.231 26.923 33.92 18.72 43.47 2.69
1978 5399 6.317642 TCCCATAACACCTTTTGTATTCATCG 59.682 38.462 0.00 0.00 37.51 3.84
2211 5643 7.602753 ACTGGAGCATATTTTTCAAACTTACC 58.397 34.615 0.00 0.00 0.00 2.85
2404 5837 9.982291 GAAGTATTTGTAGATTTCGCAACATTA 57.018 29.630 0.00 0.00 0.00 1.90
2454 5887 8.870160 TCAACTTTTGGTGAACATTTTATGAG 57.130 30.769 0.00 0.00 44.21 2.90
2460 5893 9.658799 TTTTGGTGAACATTTTATGAGTTTTGA 57.341 25.926 0.00 0.00 0.00 2.69
2515 5953 0.249868 GTGCTGCACACCTCACACTA 60.250 55.000 26.70 0.00 44.02 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.469227 AGAGGACATCTGTTGCTATGTTCT 59.531 41.667 0.00 0.00 43.26 3.01
1 2 4.764172 AGAGGACATCTGTTGCTATGTTC 58.236 43.478 0.00 0.00 36.48 3.18
2 3 4.469227 AGAGAGGACATCTGTTGCTATGTT 59.531 41.667 0.00 0.00 38.84 2.71
3 4 4.029520 AGAGAGGACATCTGTTGCTATGT 58.970 43.478 0.00 0.00 38.84 2.29
4 5 4.669206 AGAGAGGACATCTGTTGCTATG 57.331 45.455 0.00 0.00 38.84 2.23
5 6 5.301551 CAGTAGAGAGGACATCTGTTGCTAT 59.698 44.000 0.00 0.00 38.84 2.97
6 7 4.642437 CAGTAGAGAGGACATCTGTTGCTA 59.358 45.833 0.00 0.00 38.84 3.49
7 8 3.446873 CAGTAGAGAGGACATCTGTTGCT 59.553 47.826 0.00 0.00 38.84 3.91
8 9 3.779759 CAGTAGAGAGGACATCTGTTGC 58.220 50.000 0.00 0.00 38.84 4.17
9 10 3.446873 AGCAGTAGAGAGGACATCTGTTG 59.553 47.826 0.00 0.00 38.84 3.33
10 11 3.446873 CAGCAGTAGAGAGGACATCTGTT 59.553 47.826 0.00 0.00 38.84 3.16
11 12 3.023119 CAGCAGTAGAGAGGACATCTGT 58.977 50.000 0.00 0.00 38.84 3.41
12 13 3.066621 GTCAGCAGTAGAGAGGACATCTG 59.933 52.174 0.00 0.00 38.84 2.90
13 14 3.053693 AGTCAGCAGTAGAGAGGACATCT 60.054 47.826 0.00 0.00 42.61 2.90
14 15 3.287222 AGTCAGCAGTAGAGAGGACATC 58.713 50.000 0.00 0.00 0.00 3.06
15 16 3.380471 AGTCAGCAGTAGAGAGGACAT 57.620 47.619 0.00 0.00 0.00 3.06
16 17 2.822561 CAAGTCAGCAGTAGAGAGGACA 59.177 50.000 0.00 0.00 0.00 4.02
17 18 3.085533 TCAAGTCAGCAGTAGAGAGGAC 58.914 50.000 0.00 0.00 0.00 3.85
18 19 3.009584 TCTCAAGTCAGCAGTAGAGAGGA 59.990 47.826 0.00 0.00 0.00 3.71
19 20 3.351740 TCTCAAGTCAGCAGTAGAGAGG 58.648 50.000 0.00 0.00 0.00 3.69
20 21 5.581126 ATTCTCAAGTCAGCAGTAGAGAG 57.419 43.478 0.00 0.00 34.09 3.20
21 22 5.592282 CCTATTCTCAAGTCAGCAGTAGAGA 59.408 44.000 0.00 0.00 0.00 3.10
22 23 5.735922 GCCTATTCTCAAGTCAGCAGTAGAG 60.736 48.000 0.00 0.00 0.00 2.43
23 24 4.098654 GCCTATTCTCAAGTCAGCAGTAGA 59.901 45.833 0.00 0.00 0.00 2.59
24 25 4.142071 TGCCTATTCTCAAGTCAGCAGTAG 60.142 45.833 0.00 0.00 0.00 2.57
25 26 3.769300 TGCCTATTCTCAAGTCAGCAGTA 59.231 43.478 0.00 0.00 0.00 2.74
26 27 2.568956 TGCCTATTCTCAAGTCAGCAGT 59.431 45.455 0.00 0.00 0.00 4.40
27 28 3.257469 TGCCTATTCTCAAGTCAGCAG 57.743 47.619 0.00 0.00 0.00 4.24
28 29 3.701205 TTGCCTATTCTCAAGTCAGCA 57.299 42.857 0.00 0.00 0.00 4.41
29 30 4.637534 TCATTTGCCTATTCTCAAGTCAGC 59.362 41.667 0.00 0.00 0.00 4.26
30 31 6.373774 AGTTCATTTGCCTATTCTCAAGTCAG 59.626 38.462 0.00 0.00 0.00 3.51
31 32 6.240894 AGTTCATTTGCCTATTCTCAAGTCA 58.759 36.000 0.00 0.00 0.00 3.41
32 33 6.749923 AGTTCATTTGCCTATTCTCAAGTC 57.250 37.500 0.00 0.00 0.00 3.01
33 34 6.317391 GCTAGTTCATTTGCCTATTCTCAAGT 59.683 38.462 0.00 0.00 0.00 3.16
34 35 6.541641 AGCTAGTTCATTTGCCTATTCTCAAG 59.458 38.462 0.00 0.00 0.00 3.02
35 36 6.317140 CAGCTAGTTCATTTGCCTATTCTCAA 59.683 38.462 0.00 0.00 0.00 3.02
36 37 5.819379 CAGCTAGTTCATTTGCCTATTCTCA 59.181 40.000 0.00 0.00 0.00 3.27
37 38 6.051717 TCAGCTAGTTCATTTGCCTATTCTC 58.948 40.000 0.00 0.00 0.00 2.87
38 39 5.994250 TCAGCTAGTTCATTTGCCTATTCT 58.006 37.500 0.00 0.00 0.00 2.40
39 40 6.018343 GTCTCAGCTAGTTCATTTGCCTATTC 60.018 42.308 0.00 0.00 0.00 1.75
40 41 5.819901 GTCTCAGCTAGTTCATTTGCCTATT 59.180 40.000 0.00 0.00 0.00 1.73
41 42 5.104776 TGTCTCAGCTAGTTCATTTGCCTAT 60.105 40.000 0.00 0.00 0.00 2.57
42 43 4.222810 TGTCTCAGCTAGTTCATTTGCCTA 59.777 41.667 0.00 0.00 0.00 3.93
43 44 3.008375 TGTCTCAGCTAGTTCATTTGCCT 59.992 43.478 0.00 0.00 0.00 4.75
44 45 3.338249 TGTCTCAGCTAGTTCATTTGCC 58.662 45.455 0.00 0.00 0.00 4.52
45 46 5.049129 AGTTTGTCTCAGCTAGTTCATTTGC 60.049 40.000 0.00 0.00 0.00 3.68
46 47 6.551385 AGTTTGTCTCAGCTAGTTCATTTG 57.449 37.500 0.00 0.00 0.00 2.32
47 48 6.543831 ACAAGTTTGTCTCAGCTAGTTCATTT 59.456 34.615 0.00 0.00 36.50 2.32
48 49 6.058183 ACAAGTTTGTCTCAGCTAGTTCATT 58.942 36.000 0.00 0.00 36.50 2.57
49 50 5.615289 ACAAGTTTGTCTCAGCTAGTTCAT 58.385 37.500 0.00 0.00 36.50 2.57
50 51 5.023533 ACAAGTTTGTCTCAGCTAGTTCA 57.976 39.130 0.00 0.00 36.50 3.18
62 63 6.393899 GCGTCATTGCATAGACAAGTTTGTC 61.394 44.000 15.41 15.41 45.00 3.18
63 64 4.613622 GCGTCATTGCATAGACAAGTTTGT 60.614 41.667 16.34 0.00 38.37 2.83
64 65 3.848019 GCGTCATTGCATAGACAAGTTTG 59.152 43.478 16.34 3.51 34.48 2.93
65 66 3.753272 AGCGTCATTGCATAGACAAGTTT 59.247 39.130 16.34 0.00 37.31 2.66
66 67 3.125829 CAGCGTCATTGCATAGACAAGTT 59.874 43.478 16.34 0.52 37.31 2.66
67 68 2.674852 CAGCGTCATTGCATAGACAAGT 59.325 45.455 16.34 1.10 37.31 3.16
68 69 2.538333 GCAGCGTCATTGCATAGACAAG 60.538 50.000 16.34 8.23 41.17 3.16
69 70 1.398041 GCAGCGTCATTGCATAGACAA 59.602 47.619 16.34 0.00 41.17 3.18
70 71 1.009078 GCAGCGTCATTGCATAGACA 58.991 50.000 16.34 0.00 41.17 3.41
71 72 1.009078 TGCAGCGTCATTGCATAGAC 58.991 50.000 8.55 8.55 45.89 2.59
72 73 3.457099 TGCAGCGTCATTGCATAGA 57.543 47.368 0.00 0.00 45.89 1.98
77 78 0.727122 GTTGTCTGCAGCGTCATTGC 60.727 55.000 9.47 0.00 41.86 3.56
78 79 0.587768 TGTTGTCTGCAGCGTCATTG 59.412 50.000 9.47 0.00 0.00 2.82
79 80 0.588252 GTGTTGTCTGCAGCGTCATT 59.412 50.000 9.47 0.00 0.00 2.57
80 81 0.532640 TGTGTTGTCTGCAGCGTCAT 60.533 50.000 9.47 0.00 0.00 3.06
81 82 1.153469 TGTGTTGTCTGCAGCGTCA 60.153 52.632 9.47 5.41 0.00 4.35
82 83 1.566563 CTGTGTTGTCTGCAGCGTC 59.433 57.895 9.47 2.59 0.00 5.19
83 84 1.889105 CCTGTGTTGTCTGCAGCGT 60.889 57.895 9.47 0.00 0.00 5.07
84 85 2.610694 CCCTGTGTTGTCTGCAGCG 61.611 63.158 9.47 0.00 0.00 5.18
85 86 1.510480 GACCCTGTGTTGTCTGCAGC 61.510 60.000 9.47 4.92 0.00 5.25
86 87 0.886490 GGACCCTGTGTTGTCTGCAG 60.886 60.000 7.63 7.63 0.00 4.41
87 88 1.148273 GGACCCTGTGTTGTCTGCA 59.852 57.895 0.00 0.00 0.00 4.41
88 89 0.465460 TTGGACCCTGTGTTGTCTGC 60.465 55.000 0.00 0.00 0.00 4.26
89 90 2.051334 TTTGGACCCTGTGTTGTCTG 57.949 50.000 0.00 0.00 0.00 3.51
90 91 2.375146 GTTTTGGACCCTGTGTTGTCT 58.625 47.619 0.00 0.00 0.00 3.41
91 92 1.064952 CGTTTTGGACCCTGTGTTGTC 59.935 52.381 0.00 0.00 0.00 3.18
92 93 1.099689 CGTTTTGGACCCTGTGTTGT 58.900 50.000 0.00 0.00 0.00 3.32
93 94 0.248866 GCGTTTTGGACCCTGTGTTG 60.249 55.000 0.00 0.00 0.00 3.33
94 95 0.395173 AGCGTTTTGGACCCTGTGTT 60.395 50.000 0.00 0.00 0.00 3.32
95 96 1.101049 CAGCGTTTTGGACCCTGTGT 61.101 55.000 0.00 0.00 31.02 3.72
96 97 1.654220 CAGCGTTTTGGACCCTGTG 59.346 57.895 0.00 0.00 31.02 3.66
97 98 1.528309 CCAGCGTTTTGGACCCTGT 60.528 57.895 0.00 0.00 40.87 4.00
98 99 1.528309 ACCAGCGTTTTGGACCCTG 60.528 57.895 9.28 0.00 40.87 4.45
99 100 1.528309 CACCAGCGTTTTGGACCCT 60.528 57.895 9.28 0.00 40.87 4.34
100 101 3.039134 CACCAGCGTTTTGGACCC 58.961 61.111 9.28 0.00 40.87 4.46
101 102 1.805428 ATGCACCAGCGTTTTGGACC 61.805 55.000 9.28 0.00 46.23 4.46
102 103 0.664166 CATGCACCAGCGTTTTGGAC 60.664 55.000 9.28 2.87 46.23 4.02
103 104 1.106351 ACATGCACCAGCGTTTTGGA 61.106 50.000 9.28 0.00 46.23 3.53
104 105 0.940519 CACATGCACCAGCGTTTTGG 60.941 55.000 0.00 1.88 46.23 3.28
105 106 0.248990 ACACATGCACCAGCGTTTTG 60.249 50.000 0.00 0.00 46.23 2.44
106 107 0.248990 CACACATGCACCAGCGTTTT 60.249 50.000 0.00 0.00 46.23 2.43
107 108 1.359833 CACACATGCACCAGCGTTT 59.640 52.632 0.00 0.00 46.23 3.60
108 109 3.033184 CACACATGCACCAGCGTT 58.967 55.556 0.00 0.00 46.23 4.84
125 126 1.391485 CTCTACGTGCACTTGACATGC 59.609 52.381 16.19 0.00 43.68 4.06
126 127 1.995484 CCTCTACGTGCACTTGACATG 59.005 52.381 16.19 0.00 0.00 3.21
127 128 1.618837 ACCTCTACGTGCACTTGACAT 59.381 47.619 16.19 0.00 0.00 3.06
128 129 1.037493 ACCTCTACGTGCACTTGACA 58.963 50.000 16.19 0.00 0.00 3.58
129 130 1.269621 ACACCTCTACGTGCACTTGAC 60.270 52.381 16.19 0.00 37.25 3.18
130 131 1.037493 ACACCTCTACGTGCACTTGA 58.963 50.000 16.19 8.98 37.25 3.02
131 132 1.865865 AACACCTCTACGTGCACTTG 58.134 50.000 16.19 2.33 37.25 3.16
132 133 2.159014 TCAAACACCTCTACGTGCACTT 60.159 45.455 16.19 8.40 37.25 3.16
133 134 1.411246 TCAAACACCTCTACGTGCACT 59.589 47.619 16.19 4.64 37.25 4.40
134 135 1.860676 TCAAACACCTCTACGTGCAC 58.139 50.000 6.82 6.82 37.25 4.57
135 136 2.805671 CAATCAAACACCTCTACGTGCA 59.194 45.455 0.00 0.00 37.25 4.57
136 137 2.412847 GCAATCAAACACCTCTACGTGC 60.413 50.000 0.00 0.00 37.25 5.34
137 138 3.067106 AGCAATCAAACACCTCTACGTG 58.933 45.455 0.00 0.00 39.75 4.49
138 139 3.067106 CAGCAATCAAACACCTCTACGT 58.933 45.455 0.00 0.00 0.00 3.57
139 140 3.325870 TCAGCAATCAAACACCTCTACG 58.674 45.455 0.00 0.00 0.00 3.51
140 141 3.126000 GCTCAGCAATCAAACACCTCTAC 59.874 47.826 0.00 0.00 0.00 2.59
141 142 3.008375 AGCTCAGCAATCAAACACCTCTA 59.992 43.478 0.00 0.00 0.00 2.43
142 143 2.157738 GCTCAGCAATCAAACACCTCT 58.842 47.619 0.00 0.00 0.00 3.69
143 144 2.095364 CAGCTCAGCAATCAAACACCTC 60.095 50.000 0.00 0.00 0.00 3.85
144 145 1.884579 CAGCTCAGCAATCAAACACCT 59.115 47.619 0.00 0.00 0.00 4.00
145 146 1.610522 ACAGCTCAGCAATCAAACACC 59.389 47.619 0.00 0.00 0.00 4.16
146 147 3.499918 ACTACAGCTCAGCAATCAAACAC 59.500 43.478 0.00 0.00 0.00 3.32
147 148 3.743521 ACTACAGCTCAGCAATCAAACA 58.256 40.909 0.00 0.00 0.00 2.83
148 149 4.470462 CAACTACAGCTCAGCAATCAAAC 58.530 43.478 0.00 0.00 0.00 2.93
149 150 3.058016 GCAACTACAGCTCAGCAATCAAA 60.058 43.478 0.00 0.00 0.00 2.69
150 151 2.485426 GCAACTACAGCTCAGCAATCAA 59.515 45.455 0.00 0.00 0.00 2.57
151 152 2.079158 GCAACTACAGCTCAGCAATCA 58.921 47.619 0.00 0.00 0.00 2.57
152 153 2.079158 TGCAACTACAGCTCAGCAATC 58.921 47.619 0.00 0.00 0.00 2.67
153 154 2.189594 TGCAACTACAGCTCAGCAAT 57.810 45.000 0.00 0.00 0.00 3.56
154 155 2.189594 ATGCAACTACAGCTCAGCAA 57.810 45.000 0.00 0.00 35.45 3.91
155 156 1.808343 CAATGCAACTACAGCTCAGCA 59.192 47.619 0.00 0.00 36.34 4.41
156 157 1.131883 CCAATGCAACTACAGCTCAGC 59.868 52.381 0.00 0.00 0.00 4.26
157 158 2.430465 ACCAATGCAACTACAGCTCAG 58.570 47.619 0.00 0.00 0.00 3.35
158 159 2.566833 ACCAATGCAACTACAGCTCA 57.433 45.000 0.00 0.00 0.00 4.26
159 160 5.371115 TTTAACCAATGCAACTACAGCTC 57.629 39.130 0.00 0.00 0.00 4.09
160 161 5.476599 TCATTTAACCAATGCAACTACAGCT 59.523 36.000 0.00 0.00 42.06 4.24
161 162 5.708948 TCATTTAACCAATGCAACTACAGC 58.291 37.500 0.00 0.00 42.06 4.40
162 163 7.144722 TCTCATTTAACCAATGCAACTACAG 57.855 36.000 0.00 0.00 42.06 2.74
163 164 7.367285 GTTCTCATTTAACCAATGCAACTACA 58.633 34.615 0.00 0.00 42.06 2.74
164 165 6.806739 GGTTCTCATTTAACCAATGCAACTAC 59.193 38.462 0.00 0.00 44.83 2.73
165 166 6.348950 CGGTTCTCATTTAACCAATGCAACTA 60.349 38.462 5.89 0.00 45.59 2.24
166 167 5.564651 CGGTTCTCATTTAACCAATGCAACT 60.565 40.000 5.89 0.00 45.59 3.16
167 168 4.621034 CGGTTCTCATTTAACCAATGCAAC 59.379 41.667 5.89 0.00 45.59 4.17
168 169 4.804108 CGGTTCTCATTTAACCAATGCAA 58.196 39.130 5.89 0.00 45.59 4.08
169 170 3.366883 GCGGTTCTCATTTAACCAATGCA 60.367 43.478 5.89 0.00 45.59 3.96
170 171 3.119495 AGCGGTTCTCATTTAACCAATGC 60.119 43.478 5.89 1.48 45.59 3.56
171 172 4.701956 AGCGGTTCTCATTTAACCAATG 57.298 40.909 5.89 0.00 45.59 2.82
172 173 5.722021 AAAGCGGTTCTCATTTAACCAAT 57.278 34.783 0.00 0.00 45.59 3.16
173 174 6.616947 CATAAAGCGGTTCTCATTTAACCAA 58.383 36.000 0.00 0.00 45.59 3.67
174 175 5.392595 GCATAAAGCGGTTCTCATTTAACCA 60.393 40.000 0.00 0.00 45.59 3.67
175 176 5.034797 GCATAAAGCGGTTCTCATTTAACC 58.965 41.667 0.00 0.00 42.52 2.85
197 198 2.230992 TCCAACATTGTGTGCTAATGGC 59.769 45.455 0.00 0.00 39.30 4.40
198 199 3.507233 ACTCCAACATTGTGTGCTAATGG 59.493 43.478 0.00 0.00 39.30 3.16
199 200 4.771590 ACTCCAACATTGTGTGCTAATG 57.228 40.909 0.00 0.00 40.48 1.90
200 201 4.700213 GGTACTCCAACATTGTGTGCTAAT 59.300 41.667 0.00 0.00 0.00 1.73
201 202 4.069304 GGTACTCCAACATTGTGTGCTAA 58.931 43.478 0.00 0.00 0.00 3.09
202 203 3.071747 TGGTACTCCAACATTGTGTGCTA 59.928 43.478 0.00 0.00 41.25 3.49
203 204 2.158682 TGGTACTCCAACATTGTGTGCT 60.159 45.455 0.00 0.00 41.25 4.40
204 205 2.226330 TGGTACTCCAACATTGTGTGC 58.774 47.619 0.00 0.00 41.25 4.57
216 217 9.136952 CGCAACTAGTTAATATAATGGTACTCC 57.863 37.037 8.04 0.00 0.00 3.85
217 218 9.688592 ACGCAACTAGTTAATATAATGGTACTC 57.311 33.333 8.04 0.00 0.00 2.59
218 219 9.688592 GACGCAACTAGTTAATATAATGGTACT 57.311 33.333 8.04 0.00 0.00 2.73
219 220 9.467258 TGACGCAACTAGTTAATATAATGGTAC 57.533 33.333 8.04 0.00 0.00 3.34
220 221 9.687210 CTGACGCAACTAGTTAATATAATGGTA 57.313 33.333 8.04 0.00 0.00 3.25
221 222 8.202137 ACTGACGCAACTAGTTAATATAATGGT 58.798 33.333 8.04 0.00 0.00 3.55
222 223 8.589335 ACTGACGCAACTAGTTAATATAATGG 57.411 34.615 8.04 0.00 0.00 3.16
223 224 9.849607 CAACTGACGCAACTAGTTAATATAATG 57.150 33.333 8.04 0.00 33.63 1.90
224 225 9.595823 ACAACTGACGCAACTAGTTAATATAAT 57.404 29.630 8.04 0.00 33.63 1.28
225 226 8.991243 ACAACTGACGCAACTAGTTAATATAA 57.009 30.769 8.04 0.00 33.63 0.98
226 227 8.991243 AACAACTGACGCAACTAGTTAATATA 57.009 30.769 8.04 0.00 33.63 0.86
227 228 7.900782 AACAACTGACGCAACTAGTTAATAT 57.099 32.000 8.04 0.00 33.63 1.28
228 229 7.718272 AAACAACTGACGCAACTAGTTAATA 57.282 32.000 8.04 0.00 33.63 0.98
229 230 6.613755 AAACAACTGACGCAACTAGTTAAT 57.386 33.333 8.04 0.00 33.63 1.40
230 231 6.252281 CAAAACAACTGACGCAACTAGTTAA 58.748 36.000 8.04 0.00 33.63 2.01
231 232 5.220700 CCAAAACAACTGACGCAACTAGTTA 60.221 40.000 8.04 0.00 33.63 2.24
232 233 4.438200 CCAAAACAACTGACGCAACTAGTT 60.438 41.667 1.12 1.12 35.18 2.24
233 234 3.064820 CCAAAACAACTGACGCAACTAGT 59.935 43.478 0.00 0.00 0.00 2.57
234 235 3.311322 TCCAAAACAACTGACGCAACTAG 59.689 43.478 0.00 0.00 0.00 2.57
235 236 3.271729 TCCAAAACAACTGACGCAACTA 58.728 40.909 0.00 0.00 0.00 2.24
236 237 2.088423 TCCAAAACAACTGACGCAACT 58.912 42.857 0.00 0.00 0.00 3.16
237 238 2.553079 TCCAAAACAACTGACGCAAC 57.447 45.000 0.00 0.00 0.00 4.17
238 239 3.791973 AATCCAAAACAACTGACGCAA 57.208 38.095 0.00 0.00 0.00 4.85
239 240 3.791973 AAATCCAAAACAACTGACGCA 57.208 38.095 0.00 0.00 0.00 5.24
240 241 4.855531 AGTAAATCCAAAACAACTGACGC 58.144 39.130 0.00 0.00 0.00 5.19
241 242 6.262601 ACAAGTAAATCCAAAACAACTGACG 58.737 36.000 0.00 0.00 0.00 4.35
242 243 8.474006 AAACAAGTAAATCCAAAACAACTGAC 57.526 30.769 0.00 0.00 0.00 3.51
243 244 9.145865 GAAAACAAGTAAATCCAAAACAACTGA 57.854 29.630 0.00 0.00 0.00 3.41
244 245 8.930760 TGAAAACAAGTAAATCCAAAACAACTG 58.069 29.630 0.00 0.00 0.00 3.16
245 246 9.150348 CTGAAAACAAGTAAATCCAAAACAACT 57.850 29.630 0.00 0.00 0.00 3.16
246 247 8.931775 ACTGAAAACAAGTAAATCCAAAACAAC 58.068 29.630 0.00 0.00 0.00 3.32
270 271 9.010029 CCAACCTCAATACAAACAATAGTTACT 57.990 33.333 0.00 0.00 36.84 2.24
271 272 8.789762 ACCAACCTCAATACAAACAATAGTTAC 58.210 33.333 0.00 0.00 36.84 2.50
279 280 2.292016 CGCACCAACCTCAATACAAACA 59.708 45.455 0.00 0.00 0.00 2.83
348 349 9.972106 AAAAGGGATCAATTTGCCAAATTATAA 57.028 25.926 14.65 4.96 38.97 0.98
363 364 6.488683 ACACAACGATTCTAAAAAGGGATCAA 59.511 34.615 0.00 0.00 0.00 2.57
364 365 6.001460 ACACAACGATTCTAAAAAGGGATCA 58.999 36.000 0.00 0.00 0.00 2.92
366 367 7.373778 GTACACAACGATTCTAAAAAGGGAT 57.626 36.000 0.00 0.00 0.00 3.85
382 383 7.063780 ACCTATTTGCTGTATAACGTACACAAC 59.936 37.037 0.00 0.00 0.00 3.32
429 430 9.941325 ATTCATGGTTTTTATTTGCTGTGAATA 57.059 25.926 0.00 0.00 32.61 1.75
456 457 3.067742 GGCATGCTACAATGAAAGCTCAT 59.932 43.478 18.92 0.00 44.54 2.90
467 468 9.875691 CAGAATAATATACTAGGCATGCTACAA 57.124 33.333 18.92 0.00 0.00 2.41
491 492 9.717892 GGTGTTTCTACTTTTTCTAGAAAACAG 57.282 33.333 26.47 24.84 40.34 3.16
501 502 6.918022 CAGAACCATGGTGTTTCTACTTTTTC 59.082 38.462 20.60 7.22 0.00 2.29
522 523 7.244886 TGAGATTTCCTACAGATGAACAGAA 57.755 36.000 0.00 0.00 0.00 3.02
559 562 2.361567 GGGGGAAAATGCTGGCCAG 61.362 63.158 29.34 29.34 0.00 4.85
562 565 0.615827 AAGAGGGGGAAAATGCTGGC 60.616 55.000 0.00 0.00 0.00 4.85
565 568 4.540502 AGTAGTAAAGAGGGGGAAAATGCT 59.459 41.667 0.00 0.00 0.00 3.79
566 569 4.856509 AGTAGTAAAGAGGGGGAAAATGC 58.143 43.478 0.00 0.00 0.00 3.56
567 570 6.158169 AGGTAGTAGTAAAGAGGGGGAAAATG 59.842 42.308 0.00 0.00 0.00 2.32
569 572 5.668816 AGGTAGTAGTAAAGAGGGGGAAAA 58.331 41.667 0.00 0.00 0.00 2.29
600 604 6.771188 GCAAGAGTATGCGACACTTATTAT 57.229 37.500 1.84 0.00 36.91 1.28
612 616 6.583912 TTTGTAGAATACGCAAGAGTATGC 57.416 37.500 0.00 0.00 46.99 3.14
613 617 9.988350 AATTTTTGTAGAATACGCAAGAGTATG 57.012 29.630 0.00 0.00 46.99 2.39
626 630 9.988350 CTGCGACACTTATAATTTTTGTAGAAT 57.012 29.630 0.00 0.00 0.00 2.40
627 631 8.995220 ACTGCGACACTTATAATTTTTGTAGAA 58.005 29.630 0.00 0.00 0.00 2.10
628 632 8.542497 ACTGCGACACTTATAATTTTTGTAGA 57.458 30.769 0.00 0.00 0.00 2.59
629 633 9.607285 AAACTGCGACACTTATAATTTTTGTAG 57.393 29.630 0.00 0.00 0.00 2.74
630 634 9.388346 CAAACTGCGACACTTATAATTTTTGTA 57.612 29.630 0.00 0.00 0.00 2.41
631 635 8.132362 TCAAACTGCGACACTTATAATTTTTGT 58.868 29.630 0.00 0.00 0.00 2.83
632 636 8.500837 TCAAACTGCGACACTTATAATTTTTG 57.499 30.769 0.00 0.00 0.00 2.44
633 637 9.691362 ATTCAAACTGCGACACTTATAATTTTT 57.309 25.926 0.00 0.00 0.00 1.94
634 638 9.691362 AATTCAAACTGCGACACTTATAATTTT 57.309 25.926 0.00 0.00 0.00 1.82
635 639 9.341899 GAATTCAAACTGCGACACTTATAATTT 57.658 29.630 0.00 0.00 0.00 1.82
636 640 8.511321 TGAATTCAAACTGCGACACTTATAATT 58.489 29.630 5.45 0.00 0.00 1.40
637 641 8.039603 TGAATTCAAACTGCGACACTTATAAT 57.960 30.769 5.45 0.00 0.00 1.28
639 643 7.428282 TTGAATTCAAACTGCGACACTTATA 57.572 32.000 18.45 0.00 32.11 0.98
656 660 8.788813 CATAATAAGTGTCGCAGTTTTGAATTC 58.211 33.333 0.00 0.00 0.00 2.17
657 661 7.754924 CCATAATAAGTGTCGCAGTTTTGAATT 59.245 33.333 5.46 3.22 0.00 2.17
669 684 4.022242 ACCTCCGATCCATAATAAGTGTCG 60.022 45.833 0.00 0.00 0.00 4.35
672 687 6.591750 ACTACCTCCGATCCATAATAAGTG 57.408 41.667 0.00 0.00 0.00 3.16
680 695 3.157750 GGAGTACTACCTCCGATCCAT 57.842 52.381 0.00 0.00 41.58 3.41
692 707 1.002069 TTGGGACGGAGGGAGTACTA 58.998 55.000 0.00 0.00 0.00 1.82
700 715 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
704 719 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
707 722 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
708 723 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
716 731 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
717 732 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
718 733 7.520451 TTAGAGCTAGTACAAAGTTGAGACA 57.480 36.000 0.00 0.00 0.00 3.41
720 735 9.239551 TGTATTAGAGCTAGTACAAAGTTGAGA 57.760 33.333 9.55 0.00 36.00 3.27
721 736 9.856488 TTGTATTAGAGCTAGTACAAAGTTGAG 57.144 33.333 17.74 0.00 41.81 3.02
729 744 8.879759 GCACAAATTTGTATTAGAGCTAGTACA 58.120 33.333 22.87 8.30 39.91 2.90
730 745 9.099454 AGCACAAATTTGTATTAGAGCTAGTAC 57.901 33.333 22.87 3.93 39.91 2.73
736 751 7.475840 AGCTTAGCACAAATTTGTATTAGAGC 58.524 34.615 22.87 23.48 39.91 4.09
737 752 8.668353 TGAGCTTAGCACAAATTTGTATTAGAG 58.332 33.333 22.87 16.65 39.91 2.43
739 754 9.282247 CTTGAGCTTAGCACAAATTTGTATTAG 57.718 33.333 22.87 17.16 38.48 1.73
741 756 7.809806 GTCTTGAGCTTAGCACAAATTTGTATT 59.190 33.333 22.87 15.79 38.48 1.89
742 757 7.040478 TGTCTTGAGCTTAGCACAAATTTGTAT 60.040 33.333 22.87 16.50 38.48 2.29
743 758 6.262049 TGTCTTGAGCTTAGCACAAATTTGTA 59.738 34.615 22.87 5.84 38.48 2.41
744 759 5.067674 TGTCTTGAGCTTAGCACAAATTTGT 59.932 36.000 18.13 18.13 38.48 2.83
745 760 5.522456 TGTCTTGAGCTTAGCACAAATTTG 58.478 37.500 16.84 16.67 38.48 2.32
746 761 5.300286 ACTGTCTTGAGCTTAGCACAAATTT 59.700 36.000 16.84 0.00 38.48 1.82
747 762 4.823989 ACTGTCTTGAGCTTAGCACAAATT 59.176 37.500 16.84 0.00 38.48 1.82
748 763 4.392940 ACTGTCTTGAGCTTAGCACAAAT 58.607 39.130 16.84 0.15 38.48 2.32
749 764 3.808728 ACTGTCTTGAGCTTAGCACAAA 58.191 40.909 16.84 6.80 38.48 2.83
750 765 3.475566 ACTGTCTTGAGCTTAGCACAA 57.524 42.857 15.51 15.51 36.85 3.33
751 766 3.475566 AACTGTCTTGAGCTTAGCACA 57.524 42.857 7.07 3.01 0.00 4.57
752 767 6.487689 AAATAACTGTCTTGAGCTTAGCAC 57.512 37.500 7.07 0.00 0.00 4.40
753 768 6.710295 TCAAAATAACTGTCTTGAGCTTAGCA 59.290 34.615 7.07 0.00 0.00 3.49
754 769 7.118390 TCTCAAAATAACTGTCTTGAGCTTAGC 59.882 37.037 0.00 0.00 42.87 3.09
755 770 8.439286 GTCTCAAAATAACTGTCTTGAGCTTAG 58.561 37.037 13.01 0.00 42.87 2.18
756 771 7.116376 CGTCTCAAAATAACTGTCTTGAGCTTA 59.884 37.037 13.01 0.00 42.87 3.09
757 772 6.073548 CGTCTCAAAATAACTGTCTTGAGCTT 60.074 38.462 13.01 0.00 42.87 3.74
758 773 5.406780 CGTCTCAAAATAACTGTCTTGAGCT 59.593 40.000 13.01 0.00 42.87 4.09
759 774 5.389935 CCGTCTCAAAATAACTGTCTTGAGC 60.390 44.000 13.01 9.43 42.87 4.26
760 775 5.926542 TCCGTCTCAAAATAACTGTCTTGAG 59.073 40.000 12.19 12.19 43.97 3.02
761 776 5.849510 TCCGTCTCAAAATAACTGTCTTGA 58.150 37.500 0.00 0.00 0.00 3.02
762 777 5.120830 CCTCCGTCTCAAAATAACTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
763 778 5.011738 TCCTCCGTCTCAAAATAACTGTCTT 59.988 40.000 0.00 0.00 0.00 3.01
764 779 4.527038 TCCTCCGTCTCAAAATAACTGTCT 59.473 41.667 0.00 0.00 0.00 3.41
765 780 4.817517 TCCTCCGTCTCAAAATAACTGTC 58.182 43.478 0.00 0.00 0.00 3.51
766 781 4.884668 TCCTCCGTCTCAAAATAACTGT 57.115 40.909 0.00 0.00 0.00 3.55
767 782 5.238583 ACTTCCTCCGTCTCAAAATAACTG 58.761 41.667 0.00 0.00 0.00 3.16
768 783 5.485209 ACTTCCTCCGTCTCAAAATAACT 57.515 39.130 0.00 0.00 0.00 2.24
769 784 6.396450 ACTACTTCCTCCGTCTCAAAATAAC 58.604 40.000 0.00 0.00 0.00 1.89
770 785 6.600882 ACTACTTCCTCCGTCTCAAAATAA 57.399 37.500 0.00 0.00 0.00 1.40
771 786 7.893124 ATACTACTTCCTCCGTCTCAAAATA 57.107 36.000 0.00 0.00 0.00 1.40
772 787 6.793505 ATACTACTTCCTCCGTCTCAAAAT 57.206 37.500 0.00 0.00 0.00 1.82
773 788 6.600882 AATACTACTTCCTCCGTCTCAAAA 57.399 37.500 0.00 0.00 0.00 2.44
774 789 6.600882 AAATACTACTTCCTCCGTCTCAAA 57.399 37.500 0.00 0.00 0.00 2.69
775 790 6.600882 AAAATACTACTTCCTCCGTCTCAA 57.399 37.500 0.00 0.00 0.00 3.02
776 791 7.893124 ATAAAATACTACTTCCTCCGTCTCA 57.107 36.000 0.00 0.00 0.00 3.27
777 792 9.032420 CAAATAAAATACTACTTCCTCCGTCTC 57.968 37.037 0.00 0.00 0.00 3.36
778 793 8.537858 ACAAATAAAATACTACTTCCTCCGTCT 58.462 33.333 0.00 0.00 0.00 4.18
779 794 8.713737 ACAAATAAAATACTACTTCCTCCGTC 57.286 34.615 0.00 0.00 0.00 4.79
822 837 5.340439 TTTACCGTCCAAAAACAACCATT 57.660 34.783 0.00 0.00 0.00 3.16
826 841 5.063564 TGCAAATTTACCGTCCAAAAACAAC 59.936 36.000 0.00 0.00 0.00 3.32
833 848 3.306364 CCCATTGCAAATTTACCGTCCAA 60.306 43.478 1.71 0.00 0.00 3.53
1165 1189 6.829985 TTTCCCATCAGATATCTCCTTCAA 57.170 37.500 1.03 0.00 0.00 2.69
1488 1512 4.193334 CCAGCCATCGTCGCGAGA 62.193 66.667 10.24 10.10 39.91 4.04
1511 1535 3.628646 GATCACAGCGGCCCAAGGT 62.629 63.158 0.00 0.00 0.00 3.50
1609 1820 7.538575 CAAATTTTGGATAGAAACTCCGATGT 58.461 34.615 0.97 0.00 35.41 3.06
1677 5094 9.771915 AAATTGTTCACAAATTCAAAACATGTC 57.228 25.926 0.00 0.00 39.55 3.06
1800 5218 8.658609 CAATTCAAAAAGTGTTTGTGATTCTGT 58.341 29.630 5.68 0.00 0.00 3.41
1803 5221 7.840797 CGTCAATTCAAAAAGTGTTTGTGATTC 59.159 33.333 5.68 0.00 32.42 2.52
1869 5288 7.967890 AAAAATTGTCCATGAATTCCAAGAC 57.032 32.000 2.27 7.35 34.51 3.01
1871 5290 9.880157 ATCTAAAAATTGTCCATGAATTCCAAG 57.120 29.630 2.27 0.00 0.00 3.61
1952 5373 7.013274 CGATGAATACAAAAGGTGTTATGGGAT 59.987 37.037 0.00 0.00 41.98 3.85
2133 5563 9.681692 CATTAGCGGATTTGAAAATATTCATGA 57.318 29.630 0.00 0.00 44.70 3.07
2134 5564 9.467258 ACATTAGCGGATTTGAAAATATTCATG 57.533 29.630 0.00 0.00 44.70 3.07
2140 5570 9.698309 TCAAAAACATTAGCGGATTTGAAAATA 57.302 25.926 0.00 0.00 34.80 1.40
2141 5571 8.600449 TCAAAAACATTAGCGGATTTGAAAAT 57.400 26.923 0.00 0.00 34.80 1.82
2500 5938 1.371183 GCCTAGTGTGAGGTGTGCA 59.629 57.895 0.00 0.00 39.02 4.57
2503 5941 2.283529 CCGGCCTAGTGTGAGGTGT 61.284 63.158 0.00 0.00 39.02 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.