Multiple sequence alignment - TraesCS1B01G123100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G123100 chr1B 100.000 8676 0 0 1 8676 148479263 148470588 0.000000e+00 16022.0
1 TraesCS1B01G123100 chr1B 100.000 70 0 0 7929 7998 148471265 148471196 7.070000e-26 130.0
2 TraesCS1B01G123100 chr1B 100.000 70 0 0 7999 8068 148471335 148471266 7.070000e-26 130.0
3 TraesCS1B01G123100 chr1D 95.362 2803 69 10 3891 6685 93127621 93124872 0.000000e+00 4399.0
4 TraesCS1B01G123100 chr1D 89.756 2128 163 33 4 2093 93131421 93129311 0.000000e+00 2671.0
5 TraesCS1B01G123100 chr1D 94.265 1639 50 20 2060 3672 93129304 93127684 0.000000e+00 2466.0
6 TraesCS1B01G123100 chr1D 96.921 1234 34 2 6683 7913 93124791 93123559 0.000000e+00 2065.0
7 TraesCS1B01G123100 chr1D 88.581 578 41 8 8100 8674 93123516 93122961 0.000000e+00 678.0
8 TraesCS1B01G123100 chr1D 100.000 32 0 0 2001 2032 93129332 93129301 9.410000e-05 60.2
9 TraesCS1B01G123100 chr1A 96.020 2613 83 8 4081 6685 91044861 91047460 0.000000e+00 4229.0
10 TraesCS1B01G123100 chr1A 97.341 1053 24 2 6683 7731 91047541 91048593 0.000000e+00 1786.0
11 TraesCS1B01G123100 chr1A 96.154 1066 32 5 2477 3536 91042971 91044033 0.000000e+00 1733.0
12 TraesCS1B01G123100 chr1A 95.078 833 35 5 1266 2093 91041281 91042112 0.000000e+00 1306.0
13 TraesCS1B01G123100 chr1A 96.678 572 16 2 3512 4083 91044036 91044604 0.000000e+00 948.0
14 TraesCS1B01G123100 chr1A 87.165 857 71 19 402 1236 91040173 91041012 0.000000e+00 937.0
15 TraesCS1B01G123100 chr1A 94.161 411 12 3 2060 2468 91042119 91042519 4.450000e-172 616.0
16 TraesCS1B01G123100 chr1A 92.308 169 12 1 7745 7912 91049243 91049411 1.130000e-58 239.0
17 TraesCS1B01G123100 chr1A 87.640 89 10 1 7911 7998 6470347 6470435 1.540000e-17 102.0
18 TraesCS1B01G123100 chr1A 94.286 35 2 0 1998 2032 91042088 91042122 4.000000e-03 54.7
19 TraesCS1B01G123100 chr6D 82.642 265 35 8 6358 6618 220939203 220939460 3.150000e-54 224.0
20 TraesCS1B01G123100 chr6A 81.298 262 33 11 6358 6613 302776864 302776613 1.910000e-46 198.0
21 TraesCS1B01G123100 chr6A 88.764 89 9 1 7911 7998 277889683 277889771 3.310000e-19 108.0
22 TraesCS1B01G123100 chr6B 79.498 239 38 8 6384 6618 396438416 396438647 9.020000e-35 159.0
23 TraesCS1B01G123100 chr5D 87.500 88 10 1 7912 7998 60253393 60253306 5.540000e-17 100.0
24 TraesCS1B01G123100 chr5D 86.517 89 11 1 7911 7998 254342996 254343084 7.170000e-16 97.1
25 TraesCS1B01G123100 chr5D 87.209 86 10 1 7912 7996 416428007 416427922 7.170000e-16 97.1
26 TraesCS1B01G123100 chr5B 88.235 85 9 1 7912 7995 629852008 629852092 5.540000e-17 100.0
27 TraesCS1B01G123100 chr3B 85.714 91 12 1 7909 7998 622399409 622399319 2.580000e-15 95.3
28 TraesCS1B01G123100 chr2D 85.714 91 12 1 8000 8089 544576162 544576252 2.580000e-15 95.3
29 TraesCS1B01G123100 chr4D 85.556 90 12 1 7910 7998 494876031 494875942 9.270000e-15 93.5
30 TraesCS1B01G123100 chr4D 76.812 138 27 5 8541 8676 293140197 293140063 1.210000e-08 73.1
31 TraesCS1B01G123100 chr4B 77.698 139 23 7 8541 8676 277400448 277400315 2.600000e-10 78.7
32 TraesCS1B01G123100 chr4A 76.642 137 28 4 8541 8676 321193346 321193479 1.210000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G123100 chr1B 148470588 148479263 8675 True 16022.000000 16022 100.000000 1 8676 1 chr1B.!!$R1 8675
1 TraesCS1B01G123100 chr1D 93122961 93131421 8460 True 2056.533333 4399 94.147500 4 8674 6 chr1D.!!$R1 8670
2 TraesCS1B01G123100 chr1A 91040173 91049411 9238 False 1316.522222 4229 94.354556 402 7912 9 chr1A.!!$F2 7510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 410 0.040157 GAGCTGCGACACAAATTGCA 60.040 50.000 0.00 0.0 37.43 4.08 F
708 730 0.250124 ACCCAACTTTGATCACGCGA 60.250 50.000 15.93 0.0 0.00 5.87 F
767 793 1.069823 CGACTAGCATTGCCCATCTCT 59.930 52.381 4.70 0.0 0.00 3.10 F
1626 1910 1.598685 CGGTGCGGTAGGTTTTGGT 60.599 57.895 0.00 0.0 0.00 3.67 F
2240 2571 0.740164 CAGCACTAGCACAGCCTCTG 60.740 60.000 0.00 0.0 45.49 3.35 F
2908 3686 0.031857 TGCCATTTGTTTGGACTGCG 59.968 50.000 0.00 0.0 39.25 5.18 F
3762 4575 0.243907 ACACACTACTGCGCTAGTGG 59.756 55.000 29.48 23.6 45.52 4.00 F
3893 4706 0.518636 CAAATGCGTGAGTGGTCCTG 59.481 55.000 0.00 0.0 0.00 3.86 F
5211 6284 0.909133 TGTATCTGCTGCACCAGGGA 60.909 55.000 9.14 0.0 33.64 4.20 F
5872 6946 1.139520 CCGTATGGCCTTGCTTTGC 59.860 57.895 3.32 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1719 0.532573 ACGCATCAACAGATCGGACT 59.467 50.000 0.00 0.00 0.00 3.85 R
2141 2472 0.657312 ATTGTGTGCTGTGTCGTGTG 59.343 50.000 0.00 0.00 0.00 3.82 R
2142 2473 1.063912 CAATTGTGTGCTGTGTCGTGT 59.936 47.619 0.00 0.00 0.00 4.49 R
2531 3307 3.002038 TCATTGTGATGCATGGCACTA 57.998 42.857 16.78 11.29 43.04 2.74 R
3753 4566 1.871080 ATTAGCATGACCACTAGCGC 58.129 50.000 0.00 0.00 0.00 5.92 R
4801 5874 1.702401 TGTCAACCATTAGAGTGGCCA 59.298 47.619 0.00 0.00 43.27 5.36 R
5211 6284 2.658285 CACATATGGGCAAGGATGTGT 58.342 47.619 7.80 0.00 42.66 3.72 R
5661 6734 6.072618 GCTATCTCATGCATGAAATACAGCTT 60.073 38.462 28.39 10.28 36.18 3.74 R
6650 7731 0.179023 TGCACAAGTCACAGCATCCA 60.179 50.000 0.00 0.00 31.05 3.41 R
7859 9664 0.321564 TGACCGTCCAGGCATTTCTG 60.322 55.000 0.00 0.00 46.52 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.882876 CTGGAACCGACCGACGAT 59.117 61.111 0.00 0.00 45.77 3.73
25 26 1.480219 GAACCGACCGACGATGATGC 61.480 60.000 0.00 0.00 45.77 3.91
26 27 3.024609 CCGACCGACGATGATGCG 61.025 66.667 0.00 0.00 45.77 4.73
32 33 2.357543 CGACGATGATGCGGCTACG 61.358 63.158 0.00 2.73 44.63 3.51
34 35 1.269444 GACGATGATGCGGCTACGAC 61.269 60.000 0.00 0.00 44.60 4.34
41 42 2.202570 GCGGCTACGACGATGTGT 60.203 61.111 0.00 0.00 44.60 3.72
42 43 2.222217 GCGGCTACGACGATGTGTC 61.222 63.158 0.00 0.00 44.60 3.67
52 53 2.726691 CGATGTGTCGGAACCGTGC 61.727 63.158 12.93 8.09 44.00 5.34
54 55 1.003839 ATGTGTCGGAACCGTGCAT 60.004 52.632 12.93 11.97 40.74 3.96
56 57 1.959226 GTGTCGGAACCGTGCATGT 60.959 57.895 12.93 0.00 40.74 3.21
65 66 2.050168 CGTGCATGTTGGTGGTGC 60.050 61.111 0.00 0.00 39.26 5.01
70 71 0.523072 GCATGTTGGTGGTGCTACAG 59.477 55.000 0.00 0.00 36.02 2.74
71 72 1.896220 CATGTTGGTGGTGCTACAGT 58.104 50.000 0.00 0.00 0.00 3.55
73 74 1.128200 TGTTGGTGGTGCTACAGTCT 58.872 50.000 0.00 0.00 0.00 3.24
75 76 2.701423 TGTTGGTGGTGCTACAGTCTTA 59.299 45.455 0.00 0.00 0.00 2.10
91 92 3.641906 AGTCTTATACGTTGGGAGATGGG 59.358 47.826 0.00 0.00 0.00 4.00
103 104 2.124570 GATGGGACCGTGCATGCT 60.125 61.111 20.33 0.00 0.00 3.79
107 108 2.584608 GGACCGTGCATGCTAGGT 59.415 61.111 28.89 28.89 40.11 3.08
111 112 2.466982 CCGTGCATGCTAGGTGCTG 61.467 63.158 20.33 0.00 42.92 4.41
117 118 2.020694 GCATGCTAGGTGCTGGAACAT 61.021 52.381 11.37 0.00 43.37 2.71
123 124 0.473755 AGGTGCTGGAACATGTCACA 59.526 50.000 14.43 9.01 38.20 3.58
131 134 1.531149 GGAACATGTCACACGGAGTTG 59.469 52.381 0.00 0.00 41.61 3.16
154 157 1.000394 TCGGTGTCGACATGATGTTGT 60.000 47.619 23.12 0.00 40.88 3.32
163 166 1.270785 ACATGATGTTGTGCCTCGTCA 60.271 47.619 0.00 0.00 34.72 4.35
177 180 2.101575 GTCATCGACGGCGCTACA 59.898 61.111 5.31 0.00 37.46 2.74
178 181 1.515519 GTCATCGACGGCGCTACAA 60.516 57.895 5.31 0.00 37.46 2.41
179 182 1.515519 TCATCGACGGCGCTACAAC 60.516 57.895 5.31 0.00 37.46 3.32
180 183 2.202703 ATCGACGGCGCTACAACC 60.203 61.111 5.31 0.00 37.46 3.77
181 184 2.997075 ATCGACGGCGCTACAACCA 61.997 57.895 5.31 0.00 37.46 3.67
184 187 3.095898 GACGGCGCTACAACCATGC 62.096 63.158 6.90 0.00 0.00 4.06
186 189 2.485122 GGCGCTACAACCATGCAC 59.515 61.111 7.64 0.00 0.00 4.57
190 193 1.425428 GCTACAACCATGCACGCTC 59.575 57.895 0.00 0.00 0.00 5.03
195 198 1.377202 AACCATGCACGCTCGGAAT 60.377 52.632 0.00 0.00 0.00 3.01
198 201 1.647545 CCATGCACGCTCGGAATTGT 61.648 55.000 0.00 0.00 0.00 2.71
201 204 1.075542 TGCACGCTCGGAATTGTAAG 58.924 50.000 0.00 0.00 0.00 2.34
240 243 1.406539 CATTTGTGCCTACAGGATGCC 59.593 52.381 0.00 0.00 42.53 4.40
244 247 4.175337 GCCTACAGGATGCCGCCA 62.175 66.667 0.00 0.00 42.53 5.69
253 256 4.424711 ATGCCGCCACCCGTCATT 62.425 61.111 0.00 0.00 30.28 2.57
271 274 0.325272 TTGGCGGTGCTACAACCATA 59.675 50.000 0.00 0.00 40.53 2.74
272 275 0.107897 TGGCGGTGCTACAACCATAG 60.108 55.000 0.00 0.00 40.53 2.23
275 278 1.556564 CGGTGCTACAACCATAGACG 58.443 55.000 0.00 0.00 40.53 4.18
277 280 2.673043 CGGTGCTACAACCATAGACGTT 60.673 50.000 0.00 0.00 40.53 3.99
278 281 3.427909 CGGTGCTACAACCATAGACGTTA 60.428 47.826 0.00 0.00 40.53 3.18
291 294 0.458025 GACGTTAAGAGCTGGGACCG 60.458 60.000 0.00 0.00 0.00 4.79
292 295 0.896940 ACGTTAAGAGCTGGGACCGA 60.897 55.000 0.00 0.00 0.00 4.69
311 314 0.321919 ATGACGTGTGGAGCTGCATT 60.322 50.000 12.38 0.00 0.00 3.56
327 330 2.001872 GCATTGGTGCCTACAAAATGC 58.998 47.619 11.59 11.59 45.76 3.56
330 333 1.993956 TGGTGCCTACAAAATGCTGT 58.006 45.000 0.00 0.00 0.00 4.40
332 335 1.613437 GGTGCCTACAAAATGCTGTGT 59.387 47.619 0.00 0.00 0.00 3.72
344 347 2.475466 GCTGTGTCCCATCATGCGG 61.475 63.158 0.00 0.00 0.00 5.69
359 362 4.918201 CGGGGAGCTGGAATCGGC 62.918 72.222 0.00 0.00 45.35 5.54
367 370 2.008268 GCTGGAATCGGCAACATGGG 62.008 60.000 0.00 0.00 44.43 4.00
368 371 0.394216 CTGGAATCGGCAACATGGGA 60.394 55.000 0.00 0.00 0.00 4.37
383 386 1.303317 GGGAGTTGCAACCGGTGAT 60.303 57.895 25.62 6.19 0.00 3.06
384 387 1.586154 GGGAGTTGCAACCGGTGATG 61.586 60.000 25.62 4.46 0.00 3.07
385 388 0.605319 GGAGTTGCAACCGGTGATGA 60.605 55.000 25.62 0.00 0.00 2.92
387 390 1.131126 GAGTTGCAACCGGTGATGATG 59.869 52.381 25.62 2.59 0.00 3.07
392 395 0.107508 CAACCGGTGATGATGGAGCT 60.108 55.000 8.52 0.00 0.00 4.09
399 402 0.460811 TGATGATGGAGCTGCGACAC 60.461 55.000 0.00 0.06 0.00 3.67
400 403 0.460811 GATGATGGAGCTGCGACACA 60.461 55.000 0.00 0.00 0.00 3.72
403 406 1.089920 GATGGAGCTGCGACACAAAT 58.910 50.000 0.00 0.00 0.00 2.32
407 410 0.040157 GAGCTGCGACACAAATTGCA 60.040 50.000 0.00 0.00 37.43 4.08
447 451 2.045926 GTGGGGCGCTGTTGAGAT 60.046 61.111 7.64 0.00 0.00 2.75
483 487 0.613260 CCCTCGGTGGACAATCTTGA 59.387 55.000 0.00 0.00 38.35 3.02
484 488 1.210478 CCCTCGGTGGACAATCTTGAT 59.790 52.381 0.00 0.00 38.35 2.57
499 503 3.099905 TCTTGATCGTGGATGAAGGAGT 58.900 45.455 5.25 0.00 34.80 3.85
504 508 2.165167 TCGTGGATGAAGGAGTAACGT 58.835 47.619 0.00 0.00 0.00 3.99
506 510 2.527100 GTGGATGAAGGAGTAACGTCG 58.473 52.381 0.00 0.00 0.00 5.12
507 511 2.163010 GTGGATGAAGGAGTAACGTCGA 59.837 50.000 0.00 0.00 0.00 4.20
511 515 0.796113 GAAGGAGTAACGTCGACGGC 60.796 60.000 37.89 26.86 44.95 5.68
512 516 1.518056 AAGGAGTAACGTCGACGGCA 61.518 55.000 37.89 23.92 44.95 5.69
545 567 1.599047 AGCCGTGCTGCTAAGACAT 59.401 52.632 0.00 0.00 40.56 3.06
547 569 0.740868 GCCGTGCTGCTAAGACATGA 60.741 55.000 0.00 0.00 0.00 3.07
553 575 2.141517 GCTGCTAAGACATGATGCGAT 58.858 47.619 0.00 0.00 0.00 4.58
569 591 1.664965 GATAGCCATGGCCGTCGAC 60.665 63.158 33.14 14.63 43.17 4.20
580 602 2.490217 CGTCGACGGAGGAGCATT 59.510 61.111 29.70 0.00 35.37 3.56
581 603 1.586564 CGTCGACGGAGGAGCATTC 60.587 63.158 29.70 0.00 35.37 2.67
582 604 1.586564 GTCGACGGAGGAGCATTCG 60.587 63.158 0.00 0.00 0.00 3.34
584 606 2.586357 GACGGAGGAGCATTCGGC 60.586 66.667 0.00 0.00 45.30 5.54
597 619 2.624674 ATTCGGCGCCCCAGCTATTT 62.625 55.000 23.46 0.00 36.60 1.40
630 652 2.044946 GAAAGGGGAGGCACGCAT 60.045 61.111 0.98 0.00 0.00 4.73
656 678 3.322211 TTTATTTTCTCGCTCCGTGGA 57.678 42.857 0.00 0.00 0.00 4.02
691 713 2.629002 ACGGAGTTGCATGTTCACC 58.371 52.632 0.00 0.00 37.78 4.02
708 730 0.250124 ACCCAACTTTGATCACGCGA 60.250 50.000 15.93 0.00 0.00 5.87
709 731 1.086696 CCCAACTTTGATCACGCGAT 58.913 50.000 15.93 0.00 33.31 4.58
713 735 2.386661 ACTTTGATCACGCGATTCCT 57.613 45.000 15.93 0.00 29.66 3.36
736 759 6.210784 CCTAGGGTCACCGATTTGATATTCTA 59.789 42.308 0.00 0.00 43.47 2.10
738 761 6.525629 AGGGTCACCGATTTGATATTCTAAG 58.474 40.000 0.00 0.00 43.47 2.18
767 793 1.069823 CGACTAGCATTGCCCATCTCT 59.930 52.381 4.70 0.00 0.00 3.10
801 832 2.883386 CTGTAGACGATAGGGTGGTACC 59.117 54.545 4.43 4.43 43.77 3.34
965 996 2.700371 CAGCCATTTTTATTCCCCTCCC 59.300 50.000 0.00 0.00 0.00 4.30
1200 1245 3.383229 TCGCCGAGGATTTGGTGA 58.617 55.556 0.00 0.00 43.62 4.02
1484 1768 7.095982 TGCAATGAATTATGCGATGCTATTTTG 60.096 33.333 6.04 0.00 45.47 2.44
1546 1830 7.445121 AGCTTCGGAATGATATTTATCTGTGA 58.555 34.615 0.00 0.00 33.88 3.58
1626 1910 1.598685 CGGTGCGGTAGGTTTTGGT 60.599 57.895 0.00 0.00 0.00 3.67
1679 1964 2.101640 AGGAAATTGCAGTTTGGGGT 57.898 45.000 12.36 0.00 0.00 4.95
1772 2057 8.239314 TGTCTAGATTCAACAAGAATTTGATGC 58.761 33.333 0.00 0.00 46.76 3.91
1833 2118 4.092383 CAGCCAGCTGTCATTAAATTTTGC 59.908 41.667 13.81 3.77 39.10 3.68
1928 2215 5.594199 AAAACCTAGAGGGCCTTAAAGAA 57.406 39.130 7.89 0.00 40.27 2.52
2050 2338 4.706035 TGTTAACTTAACCGAGGAAGCAA 58.294 39.130 7.22 0.00 37.88 3.91
2051 2339 4.753107 TGTTAACTTAACCGAGGAAGCAAG 59.247 41.667 7.22 0.00 37.88 4.01
2240 2571 0.740164 CAGCACTAGCACAGCCTCTG 60.740 60.000 0.00 0.00 45.49 3.35
2267 2598 6.826231 TCATTCAAAGGCCATATAACTCGAAA 59.174 34.615 5.01 0.00 0.00 3.46
2308 2639 5.656859 AGATGTAGCCTGACACTAACACATA 59.343 40.000 0.00 0.00 30.52 2.29
2309 2640 5.324784 TGTAGCCTGACACTAACACATAG 57.675 43.478 0.00 0.00 37.66 2.23
2310 2641 4.770531 TGTAGCCTGACACTAACACATAGT 59.229 41.667 0.00 0.00 45.95 2.12
2328 2659 3.272574 AGTACAATCAGGCCACATCTG 57.727 47.619 5.01 0.00 0.00 2.90
2362 2695 6.324042 CACCAATTACGGGGTTATTTAACAC 58.676 40.000 3.12 0.00 38.85 3.32
2473 2806 2.158711 TGATCTGATTCTGGGCCATGAC 60.159 50.000 6.72 0.00 0.00 3.06
2474 2807 1.588239 TCTGATTCTGGGCCATGACT 58.412 50.000 6.72 0.72 0.00 3.41
2480 3256 0.915872 TCTGGGCCATGACTCCACAT 60.916 55.000 6.72 0.00 0.00 3.21
2531 3307 3.846588 CCACCCTGCCTCTATATGGTAAT 59.153 47.826 0.00 0.00 0.00 1.89
2555 3331 1.921887 GCCATGCATCACAATGAAACG 59.078 47.619 0.00 0.00 34.61 3.60
2661 3437 3.181434 GCAAGGGGATATGGTTATGGTGA 60.181 47.826 0.00 0.00 0.00 4.02
2704 3481 7.706179 GTGCAACTACATGGTTTAATGCAATAT 59.294 33.333 12.53 0.00 30.31 1.28
2908 3686 0.031857 TGCCATTTGTTTGGACTGCG 59.968 50.000 0.00 0.00 39.25 5.18
3204 3989 2.297315 TGCCGGCAATGTTCATTGTTTA 59.703 40.909 30.74 0.00 34.21 2.01
3292 4077 2.358582 TGCACTCAAATGGTTGACACTG 59.641 45.455 0.00 0.00 38.88 3.66
3372 4157 7.666063 AAATTTGCTATGCCTTCTATTCCTT 57.334 32.000 0.00 0.00 0.00 3.36
3384 4169 9.303116 TGCCTTCTATTCCTTTAATAACACAAA 57.697 29.630 0.00 0.00 29.59 2.83
3666 4479 2.712057 CAAGGTGGTTCATCTTGTGC 57.288 50.000 11.53 0.00 44.69 4.57
3707 4520 8.722480 TGTTTCTGTAGATATTGTCCATTCAG 57.278 34.615 0.00 0.00 0.00 3.02
3760 4573 2.818432 AGTAACACACTACTGCGCTAGT 59.182 45.455 9.73 13.16 43.56 2.57
3762 4575 0.243907 ACACACTACTGCGCTAGTGG 59.756 55.000 29.48 23.60 45.52 4.00
3881 4694 0.527113 TCCACATTCTGCCAAATGCG 59.473 50.000 7.79 0.04 45.60 4.73
3887 4700 0.592637 TTCTGCCAAATGCGTGAGTG 59.407 50.000 0.00 0.00 45.60 3.51
3892 4705 0.606401 CCAAATGCGTGAGTGGTCCT 60.606 55.000 0.00 0.00 0.00 3.85
3893 4706 0.518636 CAAATGCGTGAGTGGTCCTG 59.481 55.000 0.00 0.00 0.00 3.86
3978 4791 1.069906 CGAAACAGTTGTGCAGCCTAC 60.070 52.381 0.00 0.00 0.00 3.18
4154 5226 7.783090 AATATATATCTTGAATCTGCAGCCG 57.217 36.000 9.47 0.00 0.00 5.52
4454 5526 8.924303 TCACTAGATGTTGTATTTATACTGGCT 58.076 33.333 0.00 0.00 34.41 4.75
4497 5569 3.493503 GTCCGTTTACTGTTTGGAGACTG 59.506 47.826 0.00 0.00 0.00 3.51
4519 5591 8.045176 ACTGAAGATGAAAATGGTAACTTAGC 57.955 34.615 0.00 0.00 37.61 3.09
4608 5681 1.106285 ATCCTTTTGCGATGAAGGGC 58.894 50.000 4.83 0.00 42.17 5.19
4613 5686 2.208132 TTTGCGATGAAGGGCCTAAA 57.792 45.000 6.41 0.00 0.00 1.85
4684 5757 3.282021 TGGCAATCTTCATAGTGGCTTC 58.718 45.455 0.00 0.00 37.44 3.86
4692 5765 4.225942 TCTTCATAGTGGCTTCCTTGTCAT 59.774 41.667 0.00 0.00 0.00 3.06
4693 5766 5.425217 TCTTCATAGTGGCTTCCTTGTCATA 59.575 40.000 0.00 0.00 0.00 2.15
4705 5778 7.255977 GGCTTCCTTGTCATAGAGTATACATGA 60.256 40.741 5.50 3.07 0.00 3.07
4801 5874 6.434028 TCAGACATAATTTTAGCCAAAGCACT 59.566 34.615 0.00 0.00 43.56 4.40
4838 5911 5.335661 GGTTGACAATATTGGGAACAGTCAC 60.336 44.000 22.97 12.45 44.54 3.67
4879 5952 4.806247 GCCAGTATCAGTCAGTCAACATAC 59.194 45.833 0.00 0.00 0.00 2.39
4882 5955 6.350528 CCAGTATCAGTCAGTCAACATACACT 60.351 42.308 0.00 0.00 0.00 3.55
4892 5965 6.878389 TCAGTCAACATACACTGCATTGAATA 59.122 34.615 11.48 0.00 40.01 1.75
5211 6284 0.909133 TGTATCTGCTGCACCAGGGA 60.909 55.000 9.14 0.00 33.64 4.20
5661 6734 5.139727 AGTGTTTTTGGTGATGGAGAATGA 58.860 37.500 0.00 0.00 0.00 2.57
5872 6946 1.139520 CCGTATGGCCTTGCTTTGC 59.860 57.895 3.32 0.00 0.00 3.68
5894 6968 9.915629 TTTGCTAACTGAAAAGACACTTAAAAA 57.084 25.926 0.00 0.00 0.00 1.94
5947 7022 6.662414 TTAACTCGCTAAAACAGATGATGG 57.338 37.500 0.00 0.00 0.00 3.51
6044 7124 5.663456 ACATTGCAAAACAGTTCTTCATGT 58.337 33.333 1.71 0.00 0.00 3.21
6138 7218 3.755378 AGGTTTGACTGCATGCTTTCTAG 59.245 43.478 20.33 9.90 0.00 2.43
6216 7296 8.840833 ACTTAACAATGAAAAGTTGTTGGTTT 57.159 26.923 12.89 0.00 46.14 3.27
6307 7388 5.072872 AGTCCAATCTTCCTCATCCATTAGG 59.927 44.000 0.00 0.00 0.00 2.69
6398 7479 1.455383 CCTCAAACCACACACCTGCC 61.455 60.000 0.00 0.00 0.00 4.85
6438 7519 1.567357 ACCAACAAAACCACTGCCTT 58.433 45.000 0.00 0.00 0.00 4.35
6439 7520 1.480545 ACCAACAAAACCACTGCCTTC 59.519 47.619 0.00 0.00 0.00 3.46
6445 7526 2.629617 CAAAACCACTGCCTTCCTCATT 59.370 45.455 0.00 0.00 0.00 2.57
6501 7582 2.168947 CTGCCATGTCTGTGCAGTC 58.831 57.895 11.45 0.00 45.69 3.51
6549 7630 4.266265 GCTTGAGTTTTTCTTTGCAGTGTC 59.734 41.667 0.00 0.00 0.00 3.67
6565 7646 2.147958 GTGTCGCAAGTCCATTGGTTA 58.852 47.619 1.86 0.00 39.47 2.85
6650 7731 9.788889 GGTGTTATGCTAGTATTACCCTAAAAT 57.211 33.333 7.38 0.00 0.00 1.82
6719 7883 4.406456 TGCATTGTTTCCTCTACCATGTT 58.594 39.130 0.00 0.00 0.00 2.71
6747 7911 7.310052 GCTTTATCCAAATCTCCTGAGGTTTTT 60.310 37.037 2.67 0.00 39.57 1.94
6835 8004 8.874744 TGAAACTAGACTAGTCTAAGGCTAAA 57.125 34.615 28.16 10.19 41.22 1.85
6948 8117 6.399639 TTGTGATGCATGAATATCAATGCT 57.600 33.333 2.46 8.32 40.41 3.79
7105 8274 1.969923 GCTGGAGCTCATAGATCAGGT 59.030 52.381 17.19 0.00 38.21 4.00
7835 9640 3.120234 TCGTGTAGAAATGCATTGCACTG 60.120 43.478 19.79 16.20 43.04 3.66
7839 9644 4.759183 TGTAGAAATGCATTGCACTGTACA 59.241 37.500 19.79 20.07 43.04 2.90
7853 9658 3.067106 ACTGTACATGCTTTTCAGGTCG 58.933 45.455 0.00 0.00 40.56 4.79
7859 9664 1.725973 GCTTTTCAGGTCGCGCAAC 60.726 57.895 8.75 0.00 0.00 4.17
7875 9680 0.523072 CAACAGAAATGCCTGGACGG 59.477 55.000 0.00 0.00 38.44 4.79
7913 9719 8.260270 AGAAAACCGTTATTTCTACCATGTAC 57.740 34.615 5.76 0.00 43.43 2.90
7915 9721 8.625786 AAAACCGTTATTTCTACCATGTACTT 57.374 30.769 0.00 0.00 0.00 2.24
7916 9722 7.838771 AACCGTTATTTCTACCATGTACTTC 57.161 36.000 0.00 0.00 0.00 3.01
7917 9723 6.343703 ACCGTTATTTCTACCATGTACTTCC 58.656 40.000 0.00 0.00 0.00 3.46
7918 9724 6.155737 ACCGTTATTTCTACCATGTACTTCCT 59.844 38.462 0.00 0.00 0.00 3.36
7919 9725 6.700520 CCGTTATTTCTACCATGTACTTCCTC 59.299 42.308 0.00 0.00 0.00 3.71
7920 9726 6.700520 CGTTATTTCTACCATGTACTTCCTCC 59.299 42.308 0.00 0.00 0.00 4.30
7922 9728 3.377253 TCTACCATGTACTTCCTCCGT 57.623 47.619 0.00 0.00 0.00 4.69
7923 9729 3.285484 TCTACCATGTACTTCCTCCGTC 58.715 50.000 0.00 0.00 0.00 4.79
7924 9730 1.192428 ACCATGTACTTCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
7926 9732 1.100510 CATGTACTTCCTCCGTCCGA 58.899 55.000 0.00 0.00 0.00 4.55
7927 9733 1.475280 CATGTACTTCCTCCGTCCGAA 59.525 52.381 0.00 0.00 0.00 4.30
7928 9734 1.619654 TGTACTTCCTCCGTCCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
7929 9735 1.962807 TGTACTTCCTCCGTCCGAAAA 59.037 47.619 0.00 0.00 0.00 2.29
7930 9736 2.364970 TGTACTTCCTCCGTCCGAAAAA 59.635 45.455 0.00 0.00 0.00 1.94
7959 9765 4.963318 CCTCAAAGGGATGTATCTAGCA 57.037 45.455 0.00 0.00 0.00 3.49
7960 9766 5.495926 CCTCAAAGGGATGTATCTAGCAT 57.504 43.478 0.00 0.00 0.00 3.79
7961 9767 5.874093 CCTCAAAGGGATGTATCTAGCATT 58.126 41.667 0.00 0.00 0.00 3.56
7962 9768 7.009179 CCTCAAAGGGATGTATCTAGCATTA 57.991 40.000 0.00 0.00 0.00 1.90
7963 9769 7.453393 CCTCAAAGGGATGTATCTAGCATTAA 58.547 38.462 0.00 0.00 0.00 1.40
7964 9770 7.389053 CCTCAAAGGGATGTATCTAGCATTAAC 59.611 40.741 0.00 0.00 0.00 2.01
7965 9771 8.034313 TCAAAGGGATGTATCTAGCATTAACT 57.966 34.615 0.00 0.00 0.00 2.24
7966 9772 8.494433 TCAAAGGGATGTATCTAGCATTAACTT 58.506 33.333 0.00 0.00 0.00 2.66
7967 9773 8.562892 CAAAGGGATGTATCTAGCATTAACTTG 58.437 37.037 0.00 0.00 0.00 3.16
7968 9774 7.618019 AGGGATGTATCTAGCATTAACTTGA 57.382 36.000 0.00 0.00 0.00 3.02
7969 9775 8.212259 AGGGATGTATCTAGCATTAACTTGAT 57.788 34.615 0.00 0.00 36.37 2.57
7970 9776 8.099537 AGGGATGTATCTAGCATTAACTTGATG 58.900 37.037 0.00 0.00 34.60 3.07
7988 9794 9.872721 AACTTGATGCTGATATATCTATGTGAG 57.127 33.333 13.79 3.12 0.00 3.51
7989 9795 8.476447 ACTTGATGCTGATATATCTATGTGAGG 58.524 37.037 13.79 2.50 0.00 3.86
7990 9796 7.357429 TGATGCTGATATATCTATGTGAGGG 57.643 40.000 13.79 0.00 0.00 4.30
7991 9797 7.128077 TGATGCTGATATATCTATGTGAGGGA 58.872 38.462 13.79 0.00 0.00 4.20
7992 9798 6.782082 TGCTGATATATCTATGTGAGGGAC 57.218 41.667 13.79 0.00 0.00 4.46
7993 9799 6.256053 TGCTGATATATCTATGTGAGGGACA 58.744 40.000 13.79 0.00 39.53 4.02
7994 9800 6.725834 TGCTGATATATCTATGTGAGGGACAA 59.274 38.462 13.79 0.00 38.36 3.18
7995 9801 7.093596 TGCTGATATATCTATGTGAGGGACAAG 60.094 40.741 13.79 0.00 38.36 3.16
7996 9802 7.175347 TGATATATCTATGTGAGGGACAAGC 57.825 40.000 13.79 0.00 38.36 4.01
7997 9803 6.956435 TGATATATCTATGTGAGGGACAAGCT 59.044 38.462 13.79 0.00 38.36 3.74
7998 9804 8.116026 TGATATATCTATGTGAGGGACAAGCTA 58.884 37.037 13.79 0.00 38.36 3.32
7999 9805 8.901472 ATATATCTATGTGAGGGACAAGCTAA 57.099 34.615 0.00 0.00 38.36 3.09
8000 9806 5.957771 ATCTATGTGAGGGACAAGCTAAA 57.042 39.130 0.00 0.00 38.36 1.85
8001 9807 5.755409 TCTATGTGAGGGACAAGCTAAAA 57.245 39.130 0.00 0.00 38.36 1.52
8002 9808 5.488341 TCTATGTGAGGGACAAGCTAAAAC 58.512 41.667 0.00 0.00 38.36 2.43
8003 9809 3.857157 TGTGAGGGACAAGCTAAAACT 57.143 42.857 0.00 0.00 0.00 2.66
8004 9810 4.164843 TGTGAGGGACAAGCTAAAACTT 57.835 40.909 0.00 0.00 0.00 2.66
8014 9820 5.514274 CAAGCTAAAACTTGTCCCTCAAA 57.486 39.130 0.00 0.00 41.74 2.69
8015 9821 5.523369 CAAGCTAAAACTTGTCCCTCAAAG 58.477 41.667 0.00 0.00 41.74 2.77
8016 9822 4.145052 AGCTAAAACTTGTCCCTCAAAGG 58.855 43.478 0.00 0.00 35.48 3.11
8017 9823 8.400409 CAAGCTAAAACTTGTCCCTCAAAGGG 62.400 46.154 5.62 5.62 46.20 3.95
8029 9835 4.963318 CCTCAAAGGGATGTATCTAGCA 57.037 45.455 0.00 0.00 0.00 3.49
8030 9836 5.495926 CCTCAAAGGGATGTATCTAGCAT 57.504 43.478 0.00 0.00 0.00 3.79
8031 9837 5.874093 CCTCAAAGGGATGTATCTAGCATT 58.126 41.667 0.00 0.00 0.00 3.56
8032 9838 7.009179 CCTCAAAGGGATGTATCTAGCATTA 57.991 40.000 0.00 0.00 0.00 1.90
8033 9839 7.453393 CCTCAAAGGGATGTATCTAGCATTAA 58.547 38.462 0.00 0.00 0.00 1.40
8034 9840 7.389053 CCTCAAAGGGATGTATCTAGCATTAAC 59.611 40.741 0.00 0.00 0.00 2.01
8035 9841 8.034313 TCAAAGGGATGTATCTAGCATTAACT 57.966 34.615 0.00 0.00 0.00 2.24
8036 9842 8.494433 TCAAAGGGATGTATCTAGCATTAACTT 58.506 33.333 0.00 0.00 0.00 2.66
8037 9843 8.562892 CAAAGGGATGTATCTAGCATTAACTTG 58.437 37.037 0.00 0.00 0.00 3.16
8038 9844 7.618019 AGGGATGTATCTAGCATTAACTTGA 57.382 36.000 0.00 0.00 0.00 3.02
8039 9845 8.212259 AGGGATGTATCTAGCATTAACTTGAT 57.788 34.615 0.00 0.00 36.37 2.57
8040 9846 8.099537 AGGGATGTATCTAGCATTAACTTGATG 58.900 37.037 0.00 0.00 34.60 3.07
8058 9864 9.872721 AACTTGATGCTGATATATCTATGTGAG 57.127 33.333 13.79 3.12 0.00 3.51
8059 9865 8.476447 ACTTGATGCTGATATATCTATGTGAGG 58.524 37.037 13.79 2.50 0.00 3.86
8060 9866 7.357429 TGATGCTGATATATCTATGTGAGGG 57.643 40.000 13.79 0.00 0.00 4.30
8061 9867 7.128077 TGATGCTGATATATCTATGTGAGGGA 58.872 38.462 13.79 0.00 0.00 4.20
8062 9868 6.782082 TGCTGATATATCTATGTGAGGGAC 57.218 41.667 13.79 0.00 0.00 4.46
8063 9869 6.256053 TGCTGATATATCTATGTGAGGGACA 58.744 40.000 13.79 0.00 39.53 4.02
8064 9870 6.725834 TGCTGATATATCTATGTGAGGGACAA 59.274 38.462 13.79 0.00 38.36 3.18
8065 9871 7.093596 TGCTGATATATCTATGTGAGGGACAAG 60.094 40.741 13.79 0.00 38.36 3.16
8066 9872 7.175347 TGATATATCTATGTGAGGGACAAGC 57.825 40.000 13.79 0.00 38.36 4.01
8067 9873 6.956435 TGATATATCTATGTGAGGGACAAGCT 59.044 38.462 13.79 0.00 38.36 3.74
8068 9874 7.455953 TGATATATCTATGTGAGGGACAAGCTT 59.544 37.037 13.79 0.00 38.36 3.74
8069 9875 4.851639 ATCTATGTGAGGGACAAGCTTT 57.148 40.909 0.00 0.00 38.36 3.51
8070 9876 4.640771 TCTATGTGAGGGACAAGCTTTT 57.359 40.909 0.00 0.00 38.36 2.27
8071 9877 4.579869 TCTATGTGAGGGACAAGCTTTTC 58.420 43.478 3.91 3.91 38.36 2.29
8072 9878 3.515602 ATGTGAGGGACAAGCTTTTCT 57.484 42.857 12.17 0.43 38.36 2.52
8073 9879 2.575532 TGTGAGGGACAAGCTTTTCTG 58.424 47.619 12.17 0.00 0.00 3.02
8074 9880 1.882623 GTGAGGGACAAGCTTTTCTGG 59.117 52.381 12.17 0.00 0.00 3.86
8075 9881 1.774254 TGAGGGACAAGCTTTTCTGGA 59.226 47.619 12.17 0.00 0.00 3.86
8076 9882 2.155279 GAGGGACAAGCTTTTCTGGAC 58.845 52.381 12.17 1.78 0.00 4.02
8077 9883 1.494721 AGGGACAAGCTTTTCTGGACA 59.505 47.619 12.17 0.00 0.00 4.02
8078 9884 1.882623 GGGACAAGCTTTTCTGGACAG 59.117 52.381 12.17 0.00 0.00 3.51
8079 9885 2.487265 GGGACAAGCTTTTCTGGACAGA 60.487 50.000 12.17 0.00 35.27 3.41
8080 9886 3.214328 GGACAAGCTTTTCTGGACAGAA 58.786 45.455 12.17 10.52 44.94 3.02
8081 9887 3.251972 GGACAAGCTTTTCTGGACAGAAG 59.748 47.826 12.17 5.88 46.80 2.85
8082 9888 3.217626 ACAAGCTTTTCTGGACAGAAGG 58.782 45.455 13.77 11.94 46.80 3.46
8083 9889 3.117888 ACAAGCTTTTCTGGACAGAAGGA 60.118 43.478 13.77 7.26 46.80 3.36
8084 9890 3.415457 AGCTTTTCTGGACAGAAGGAG 57.585 47.619 13.77 15.44 46.80 3.69
8085 9891 2.708325 AGCTTTTCTGGACAGAAGGAGT 59.292 45.455 13.77 6.07 46.80 3.85
8086 9892 3.904339 AGCTTTTCTGGACAGAAGGAGTA 59.096 43.478 13.77 0.00 46.80 2.59
8087 9893 4.020662 AGCTTTTCTGGACAGAAGGAGTAG 60.021 45.833 13.77 9.23 46.80 2.57
8088 9894 4.021016 GCTTTTCTGGACAGAAGGAGTAGA 60.021 45.833 13.77 0.00 46.80 2.59
8089 9895 5.511545 GCTTTTCTGGACAGAAGGAGTAGAA 60.512 44.000 13.77 4.41 46.80 2.10
8090 9896 6.494666 TTTTCTGGACAGAAGGAGTAGAAA 57.505 37.500 13.77 0.00 46.80 2.52
8091 9897 5.730296 TTCTGGACAGAAGGAGTAGAAAG 57.270 43.478 10.52 0.00 42.06 2.62
8092 9898 4.742012 TCTGGACAGAAGGAGTAGAAAGT 58.258 43.478 0.00 0.00 33.91 2.66
8093 9899 5.888901 TCTGGACAGAAGGAGTAGAAAGTA 58.111 41.667 0.00 0.00 33.91 2.24
8094 9900 6.312529 TCTGGACAGAAGGAGTAGAAAGTAA 58.687 40.000 0.00 0.00 33.91 2.24
8095 9901 6.208994 TCTGGACAGAAGGAGTAGAAAGTAAC 59.791 42.308 0.00 0.00 33.91 2.50
8096 9902 5.245526 TGGACAGAAGGAGTAGAAAGTAACC 59.754 44.000 0.00 0.00 0.00 2.85
8097 9903 5.337410 GGACAGAAGGAGTAGAAAGTAACCC 60.337 48.000 0.00 0.00 0.00 4.11
8098 9904 4.220163 ACAGAAGGAGTAGAAAGTAACCCG 59.780 45.833 0.00 0.00 0.00 5.28
8117 9923 1.285950 GCAAGCCTTTTGTCCGTCC 59.714 57.895 0.00 0.00 0.00 4.79
8121 9927 2.626780 GCCTTTTGTCCGTCCTGCC 61.627 63.158 0.00 0.00 0.00 4.85
8138 9944 0.249447 GCCCGCCAATGATTTTAGGC 60.249 55.000 0.00 0.00 43.61 3.93
8139 9945 1.402787 CCCGCCAATGATTTTAGGCT 58.597 50.000 3.90 0.00 44.85 4.58
8146 9952 4.776743 CCAATGATTTTAGGCTTCGATCG 58.223 43.478 9.36 9.36 0.00 3.69
8151 9957 4.340097 TGATTTTAGGCTTCGATCGTAGGA 59.660 41.667 21.21 0.00 0.00 2.94
8156 9962 0.948678 GCTTCGATCGTAGGAGCTCT 59.051 55.000 21.21 2.18 0.00 4.09
8324 10133 4.444536 TGGCAATAATAGACGGTACAACC 58.555 43.478 0.00 0.00 34.05 3.77
8348 10157 5.449862 CGGAAAGACAATGAGACCAAAAACA 60.450 40.000 0.00 0.00 0.00 2.83
8350 10159 6.986231 GGAAAGACAATGAGACCAAAAACAAT 59.014 34.615 0.00 0.00 0.00 2.71
8353 10162 6.742109 AGACAATGAGACCAAAAACAATCAG 58.258 36.000 0.00 0.00 0.00 2.90
8356 10165 7.555087 ACAATGAGACCAAAAACAATCAGAAA 58.445 30.769 0.00 0.00 0.00 2.52
8357 10166 8.040132 ACAATGAGACCAAAAACAATCAGAAAA 58.960 29.630 0.00 0.00 0.00 2.29
8404 10213 4.089361 GGTGGGTCTTCCTCATTTGATTT 58.911 43.478 0.00 0.00 36.20 2.17
8410 10219 7.454380 TGGGTCTTCCTCATTTGATTTTATGTT 59.546 33.333 0.00 0.00 36.20 2.71
8413 10222 8.031277 GTCTTCCTCATTTGATTTTATGTTGCT 58.969 33.333 0.00 0.00 0.00 3.91
8436 10245 7.067615 TGCTGTCTAAAAACTATGTTGAACCAA 59.932 33.333 0.00 0.00 0.00 3.67
8463 10272 9.424659 CAATAAAGAAAAGAAACATGTGCAAAC 57.575 29.630 0.00 0.00 0.00 2.93
8468 10277 2.297701 AGAAACATGTGCAAACGTCCT 58.702 42.857 0.00 0.00 0.00 3.85
8483 10292 6.475207 CAAACGTCCTGTATGCAATAACTAC 58.525 40.000 0.00 0.00 0.00 2.73
8545 10354 5.589452 ACATTTCCATGCAACACAAAACAAT 59.411 32.000 0.00 0.00 33.05 2.71
8582 10391 1.593209 GCCGTCAAACCACGAGACA 60.593 57.895 0.00 0.00 42.69 3.41
8583 10392 1.155424 GCCGTCAAACCACGAGACAA 61.155 55.000 0.00 0.00 42.69 3.18
8588 10397 3.603857 CGTCAAACCACGAGACAATCAAC 60.604 47.826 0.00 0.00 42.69 3.18
8597 10406 4.024556 CACGAGACAATCAACTGCTTCTTT 60.025 41.667 0.00 0.00 0.00 2.52
8613 10422 4.578601 CTTCTTTCGACTGACACACAAAC 58.421 43.478 0.00 0.00 0.00 2.93
8625 10434 7.441836 ACTGACACACAAACTGTCAATATCTA 58.558 34.615 3.07 0.00 45.72 1.98
8635 10444 5.837437 ACTGTCAATATCTAAAGAGAGCCG 58.163 41.667 0.00 0.00 34.35 5.52
8646 10455 0.759346 AGAGAGCCGACAAGTTTGGT 59.241 50.000 0.00 0.00 0.00 3.67
8649 10458 2.479275 GAGAGCCGACAAGTTTGGTAAC 59.521 50.000 0.00 0.00 34.36 2.50
8674 10483 2.125912 CTCACAGGCCCTTCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
8675 10484 3.649277 CTCACAGGCCCTTCGTCGG 62.649 68.421 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.351938 CGTCGGTCGGTTCCAGCA 62.352 66.667 0.00 0.00 35.71 4.41
2 3 3.352338 ATCGTCGGTCGGTTCCAGC 62.352 63.158 0.00 0.00 40.32 4.85
12 13 2.486663 TAGCCGCATCATCGTCGGT 61.487 57.895 1.83 0.00 44.58 4.69
20 21 1.299089 CATCGTCGTAGCCGCATCA 60.299 57.895 0.00 0.00 0.00 3.07
25 26 3.978373 GACACATCGTCGTAGCCG 58.022 61.111 0.00 0.00 34.19 5.52
41 42 1.963855 CCAACATGCACGGTTCCGA 60.964 57.895 18.28 0.00 0.00 4.55
42 43 2.258013 ACCAACATGCACGGTTCCG 61.258 57.895 9.81 9.81 0.00 4.30
52 53 1.806542 GACTGTAGCACCACCAACATG 59.193 52.381 0.00 0.00 0.00 3.21
54 55 1.128200 AGACTGTAGCACCACCAACA 58.872 50.000 0.00 0.00 0.00 3.33
56 57 4.381185 CGTATAAGACTGTAGCACCACCAA 60.381 45.833 0.00 0.00 0.00 3.67
65 66 6.439599 CATCTCCCAACGTATAAGACTGTAG 58.560 44.000 0.00 0.00 0.00 2.74
70 71 3.640029 TCCCATCTCCCAACGTATAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
71 72 3.640029 GTCCCATCTCCCAACGTATAAGA 59.360 47.826 0.00 0.00 0.00 2.10
73 74 2.701951 GGTCCCATCTCCCAACGTATAA 59.298 50.000 0.00 0.00 0.00 0.98
75 76 1.129058 GGTCCCATCTCCCAACGTAT 58.871 55.000 0.00 0.00 0.00 3.06
91 92 2.464459 GCACCTAGCATGCACGGTC 61.464 63.158 23.23 15.81 44.79 4.79
103 104 1.696884 TGTGACATGTTCCAGCACCTA 59.303 47.619 0.00 0.00 0.00 3.08
107 108 0.884259 CCGTGTGACATGTTCCAGCA 60.884 55.000 0.00 0.00 0.00 4.41
111 112 1.531149 CAACTCCGTGTGACATGTTCC 59.469 52.381 0.00 0.00 0.00 3.62
117 118 0.943835 CGATGCAACTCCGTGTGACA 60.944 55.000 0.00 0.00 0.00 3.58
123 124 1.374252 GACACCGATGCAACTCCGT 60.374 57.895 0.00 0.00 0.00 4.69
146 149 1.725641 GATGACGAGGCACAACATCA 58.274 50.000 11.20 0.00 37.74 3.07
163 166 2.202703 GGTTGTAGCGCCGTCGAT 60.203 61.111 2.29 0.00 38.10 3.59
169 172 2.485122 GTGCATGGTTGTAGCGCC 59.515 61.111 2.29 0.00 32.93 6.53
171 174 2.098298 GCGTGCATGGTTGTAGCG 59.902 61.111 8.27 0.00 0.00 4.26
177 180 0.960364 AATTCCGAGCGTGCATGGTT 60.960 50.000 12.67 0.00 0.00 3.67
178 181 1.377202 AATTCCGAGCGTGCATGGT 60.377 52.632 11.08 11.08 0.00 3.55
179 182 1.063006 CAATTCCGAGCGTGCATGG 59.937 57.895 8.27 0.00 0.00 3.66
180 183 1.006086 TACAATTCCGAGCGTGCATG 58.994 50.000 0.09 0.09 0.00 4.06
181 184 1.665679 CTTACAATTCCGAGCGTGCAT 59.334 47.619 0.00 0.00 0.00 3.96
184 187 1.393539 CCACTTACAATTCCGAGCGTG 59.606 52.381 0.00 0.00 0.00 5.34
186 189 1.393539 CACCACTTACAATTCCGAGCG 59.606 52.381 0.00 0.00 0.00 5.03
190 193 3.059188 GTGTGTCACCACTTACAATTCCG 60.059 47.826 0.00 0.00 42.34 4.30
195 198 4.328536 ACTTTGTGTGTCACCACTTACAA 58.671 39.130 0.00 1.21 42.34 2.41
198 201 4.209307 TGACTTTGTGTGTCACCACTTA 57.791 40.909 0.00 0.00 42.34 2.24
253 256 0.107897 CTATGGTTGTAGCACCGCCA 60.108 55.000 0.00 0.00 40.09 5.69
257 260 2.667473 ACGTCTATGGTTGTAGCACC 57.333 50.000 0.00 0.00 37.34 5.01
271 274 0.896226 GGTCCCAGCTCTTAACGTCT 59.104 55.000 0.00 0.00 0.00 4.18
272 275 0.458025 CGGTCCCAGCTCTTAACGTC 60.458 60.000 0.00 0.00 0.00 4.34
275 278 1.480954 TCATCGGTCCCAGCTCTTAAC 59.519 52.381 0.00 0.00 0.00 2.01
277 280 1.112113 GTCATCGGTCCCAGCTCTTA 58.888 55.000 0.00 0.00 0.00 2.10
278 281 1.901085 GTCATCGGTCCCAGCTCTT 59.099 57.895 0.00 0.00 0.00 2.85
291 294 0.742281 ATGCAGCTCCACACGTCATC 60.742 55.000 0.00 0.00 0.00 2.92
292 295 0.321919 AATGCAGCTCCACACGTCAT 60.322 50.000 0.00 0.00 0.00 3.06
311 314 1.612950 CACAGCATTTTGTAGGCACCA 59.387 47.619 0.00 0.00 0.00 4.17
344 347 2.115291 GTTGCCGATTCCAGCTCCC 61.115 63.158 0.00 0.00 0.00 4.30
349 352 0.394216 TCCCATGTTGCCGATTCCAG 60.394 55.000 0.00 0.00 0.00 3.86
364 367 2.063015 ATCACCGGTTGCAACTCCCA 62.063 55.000 27.64 9.92 0.00 4.37
367 370 1.131126 CATCATCACCGGTTGCAACTC 59.869 52.381 27.64 16.97 0.00 3.01
368 371 1.167851 CATCATCACCGGTTGCAACT 58.832 50.000 27.64 6.77 0.00 3.16
383 386 0.250252 TTTGTGTCGCAGCTCCATCA 60.250 50.000 0.00 0.00 0.00 3.07
384 387 1.089920 ATTTGTGTCGCAGCTCCATC 58.910 50.000 0.00 0.00 0.00 3.51
385 388 1.200716 CAATTTGTGTCGCAGCTCCAT 59.799 47.619 0.00 0.00 0.00 3.41
387 390 0.730494 GCAATTTGTGTCGCAGCTCC 60.730 55.000 0.00 0.00 0.00 4.70
392 395 0.041400 CTCGTGCAATTTGTGTCGCA 60.041 50.000 0.00 0.00 0.00 5.10
399 402 0.317770 ACGTTGGCTCGTGCAATTTG 60.318 50.000 12.07 0.00 42.56 2.32
400 403 2.029743 ACGTTGGCTCGTGCAATTT 58.970 47.368 12.07 0.00 42.56 1.82
407 410 3.112075 CGCATCACGTTGGCTCGT 61.112 61.111 2.89 2.89 45.10 4.18
483 487 2.758979 ACGTTACTCCTTCATCCACGAT 59.241 45.455 0.00 0.00 0.00 3.73
484 488 2.163010 GACGTTACTCCTTCATCCACGA 59.837 50.000 0.00 0.00 0.00 4.35
499 503 2.431260 GCCTTGCCGTCGACGTTA 60.431 61.111 33.49 20.45 37.74 3.18
528 532 0.740868 TCATGTCTTAGCAGCACGGC 60.741 55.000 0.00 0.00 0.00 5.68
529 533 1.596260 CATCATGTCTTAGCAGCACGG 59.404 52.381 0.00 0.00 0.00 4.94
530 534 1.004185 GCATCATGTCTTAGCAGCACG 60.004 52.381 0.00 0.00 0.00 5.34
532 536 1.134729 TCGCATCATGTCTTAGCAGCA 60.135 47.619 0.00 0.00 0.00 4.41
533 537 1.575244 TCGCATCATGTCTTAGCAGC 58.425 50.000 0.00 0.00 0.00 5.25
534 538 3.367327 GCTATCGCATCATGTCTTAGCAG 59.633 47.826 8.93 0.00 35.78 4.24
535 539 3.320626 GCTATCGCATCATGTCTTAGCA 58.679 45.455 8.93 0.00 35.78 3.49
536 540 2.670414 GGCTATCGCATCATGTCTTAGC 59.330 50.000 0.00 6.40 38.10 3.09
537 541 3.917988 TGGCTATCGCATCATGTCTTAG 58.082 45.455 0.00 0.00 38.10 2.18
538 542 4.248058 CATGGCTATCGCATCATGTCTTA 58.752 43.478 0.00 0.00 38.10 2.10
539 543 2.916702 TGGCTATCGCATCATGTCTT 57.083 45.000 0.00 0.00 38.10 3.01
545 567 1.302752 GGCCATGGCTATCGCATCA 60.303 57.895 34.70 0.00 41.60 3.07
547 569 2.359107 CGGCCATGGCTATCGCAT 60.359 61.111 34.70 0.00 41.60 4.73
553 575 4.201679 CGTCGACGGCCATGGCTA 62.202 66.667 34.70 13.61 41.60 3.93
580 602 3.750373 GAAATAGCTGGGGCGCCGA 62.750 63.158 22.54 8.69 44.37 5.54
581 603 3.279875 GAAATAGCTGGGGCGCCG 61.280 66.667 22.54 8.08 44.37 6.46
582 604 2.124320 TGAAATAGCTGGGGCGCC 60.124 61.111 21.18 21.18 44.37 6.53
584 606 2.823829 GCGTGAAATAGCTGGGGCG 61.824 63.158 0.00 0.00 44.37 6.13
585 607 2.823829 CGCGTGAAATAGCTGGGGC 61.824 63.158 0.00 0.00 39.06 5.80
586 608 2.823829 GCGCGTGAAATAGCTGGGG 61.824 63.158 8.43 0.00 0.00 4.96
587 609 2.709475 GCGCGTGAAATAGCTGGG 59.291 61.111 8.43 0.00 0.00 4.45
610 632 2.359975 CGTGCCTCCCCTTTCCAC 60.360 66.667 0.00 0.00 0.00 4.02
630 652 4.119862 CGGAGCGAGAAAATAAATCCTCA 58.880 43.478 0.00 0.00 0.00 3.86
656 678 2.567169 TCCGTCATTTCTCCTGTGTCAT 59.433 45.455 0.00 0.00 0.00 3.06
663 685 1.347707 TGCAACTCCGTCATTTCTCCT 59.652 47.619 0.00 0.00 0.00 3.69
671 693 1.225855 GTGAACATGCAACTCCGTCA 58.774 50.000 0.00 0.00 0.00 4.35
690 712 1.086696 ATCGCGTGATCAAAGTTGGG 58.913 50.000 5.43 0.00 0.00 4.12
691 713 2.476185 GGAATCGCGTGATCAAAGTTGG 60.476 50.000 12.67 0.00 32.24 3.77
708 730 3.112263 TCAAATCGGTGACCCTAGGAAT 58.888 45.455 11.48 0.00 0.00 3.01
709 731 2.542550 TCAAATCGGTGACCCTAGGAA 58.457 47.619 11.48 0.00 0.00 3.36
713 735 7.606135 TTAGAATATCAAATCGGTGACCCTA 57.394 36.000 0.00 0.00 0.00 3.53
767 793 4.989044 TCGTCTACAGCATGAACGATTAA 58.011 39.130 0.00 0.00 41.29 1.40
801 832 6.373779 ACTCTAAAATTTCAGCAATGACGTG 58.626 36.000 0.00 0.00 0.00 4.49
850 881 2.752903 TGGCCGCTTTAGAAGGATTTTC 59.247 45.455 0.00 0.00 0.00 2.29
965 996 1.705186 TCTGGGGGAAAACAGAAGAGG 59.295 52.381 0.00 0.00 40.51 3.69
1178 1223 1.068741 ACCAAATCCTCGGCGATAGAC 59.931 52.381 11.27 0.00 44.83 2.59
1200 1245 2.739996 CCAGCTCTTGGCCGGATCT 61.740 63.158 5.05 0.00 40.83 2.75
1313 1597 2.124942 GCCGCCTTCTCCTCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
1435 1719 0.532573 ACGCATCAACAGATCGGACT 59.467 50.000 0.00 0.00 0.00 3.85
1462 1746 6.392354 CCCAAAATAGCATCGCATAATTCAT 58.608 36.000 0.00 0.00 0.00 2.57
1484 1768 1.073199 CGGCCCAGTCATAATCCCC 59.927 63.158 0.00 0.00 0.00 4.81
1546 1830 2.988010 TCGCAATTCAGCCAGATACT 57.012 45.000 0.00 0.00 0.00 2.12
1551 1835 3.181494 TGAAATGATCGCAATTCAGCCAG 60.181 43.478 0.00 0.00 38.61 4.85
1626 1910 6.974048 TGAGTAAGATAACGCAAAATACGCTA 59.026 34.615 0.00 0.00 0.00 4.26
1679 1964 4.935205 CGAGACACAATTACCAAATCCAGA 59.065 41.667 0.00 0.00 0.00 3.86
1772 2057 3.321682 TCCAGAAAAGGGAGCACATTTTG 59.678 43.478 8.23 0.00 0.00 2.44
1833 2118 2.821969 CCTCCAAAATCCACACTTCCAG 59.178 50.000 0.00 0.00 0.00 3.86
1928 2215 7.451877 TCACTACTCCTGAAGTTTTGAGTATCT 59.548 37.037 9.27 0.00 39.04 1.98
2139 2470 1.081556 TGTGTGCTGTGTCGTGTGTC 61.082 55.000 0.00 0.00 0.00 3.67
2140 2471 0.672091 TTGTGTGCTGTGTCGTGTGT 60.672 50.000 0.00 0.00 0.00 3.72
2141 2472 0.657312 ATTGTGTGCTGTGTCGTGTG 59.343 50.000 0.00 0.00 0.00 3.82
2142 2473 1.063912 CAATTGTGTGCTGTGTCGTGT 59.936 47.619 0.00 0.00 0.00 4.49
2143 2474 1.330213 TCAATTGTGTGCTGTGTCGTG 59.670 47.619 5.13 0.00 0.00 4.35
2144 2475 1.599071 CTCAATTGTGTGCTGTGTCGT 59.401 47.619 5.13 0.00 0.00 4.34
2145 2476 1.599071 ACTCAATTGTGTGCTGTGTCG 59.401 47.619 12.15 0.00 0.00 4.35
2240 2571 5.334414 CGAGTTATATGGCCTTTGAATGAGC 60.334 44.000 3.32 0.00 0.00 4.26
2245 2576 6.431543 TGTTTTCGAGTTATATGGCCTTTGAA 59.568 34.615 3.32 0.00 0.00 2.69
2308 2639 2.681976 GCAGATGTGGCCTGATTGTACT 60.682 50.000 3.32 0.00 33.65 2.73
2309 2640 1.672881 GCAGATGTGGCCTGATTGTAC 59.327 52.381 3.32 0.00 33.65 2.90
2310 2641 1.281577 TGCAGATGTGGCCTGATTGTA 59.718 47.619 3.32 0.00 33.65 2.41
2362 2695 6.036470 TGTTGCTAGAATTAGTCATGACTCG 58.964 40.000 31.09 12.76 42.54 4.18
2473 2806 6.372659 AGTTCTTGTTAGTTGCATATGTGGAG 59.627 38.462 4.29 0.00 0.00 3.86
2474 2807 6.237901 AGTTCTTGTTAGTTGCATATGTGGA 58.762 36.000 4.29 0.00 0.00 4.02
2531 3307 3.002038 TCATTGTGATGCATGGCACTA 57.998 42.857 16.78 11.29 43.04 2.74
2555 3331 5.554822 TGTTGTCTAGGTGTTTTGTTCAC 57.445 39.130 0.00 0.00 35.36 3.18
2908 3686 9.907576 CGTTGACACTCAGAGATTAAATAATTC 57.092 33.333 3.79 0.00 0.00 2.17
3292 4077 4.402155 TGGTCAAATAATCAAGCATGGTCC 59.598 41.667 0.00 0.00 0.00 4.46
3638 4451 6.332976 AGATGAACCACCTTGAAATAGGAT 57.667 37.500 0.00 0.00 38.73 3.24
3666 4479 3.004734 AGAAACAAAGCGAACAATCTGGG 59.995 43.478 0.00 0.00 0.00 4.45
3707 4520 7.683437 AAAGTAATCCAGTGTAGCCTTAAAC 57.317 36.000 0.00 0.00 0.00 2.01
3753 4566 1.871080 ATTAGCATGACCACTAGCGC 58.129 50.000 0.00 0.00 0.00 5.92
3760 4573 6.278172 TGCATAACAAAATTAGCATGACCA 57.722 33.333 0.00 0.00 0.00 4.02
3892 4705 4.623932 AGCAGAAAGAACATAGGTCACA 57.376 40.909 0.00 0.00 0.00 3.58
3893 4706 7.334421 TGAATAAGCAGAAAGAACATAGGTCAC 59.666 37.037 0.00 0.00 0.00 3.67
4052 4865 6.479884 AGAAGTAACTACCTTCTCGTAAGGA 58.520 40.000 21.11 8.12 39.81 3.36
4154 5226 4.035278 TGGACACCAATGAAAACGAAAC 57.965 40.909 0.00 0.00 0.00 2.78
4321 5393 3.435327 TGCGCTACAAATTTACAGGACAG 59.565 43.478 9.73 0.00 0.00 3.51
4372 5444 8.453320 CACATTTTTCTACATGAGCAAGATACA 58.547 33.333 0.00 0.00 0.00 2.29
4454 5526 8.306038 ACGGACAAGTGTAACATTACTACATTA 58.694 33.333 3.58 0.00 41.43 1.90
4455 5527 7.156673 ACGGACAAGTGTAACATTACTACATT 58.843 34.615 3.58 0.00 41.43 2.71
4456 5528 6.694447 ACGGACAAGTGTAACATTACTACAT 58.306 36.000 3.58 0.00 41.43 2.29
4457 5529 6.088016 ACGGACAAGTGTAACATTACTACA 57.912 37.500 3.58 0.00 41.43 2.74
4458 5530 7.412137 AAACGGACAAGTGTAACATTACTAC 57.588 36.000 3.58 1.17 41.43 2.73
4459 5531 8.359642 AGTAAACGGACAAGTGTAACATTACTA 58.640 33.333 3.58 0.00 41.43 1.82
4460 5532 7.170320 CAGTAAACGGACAAGTGTAACATTACT 59.830 37.037 3.58 0.00 41.43 2.24
4461 5533 7.042523 ACAGTAAACGGACAAGTGTAACATTAC 60.043 37.037 0.00 0.00 41.43 1.89
4497 5569 8.045176 AGTGCTAAGTTACCATTTTCATCTTC 57.955 34.615 0.00 0.00 0.00 2.87
4519 5591 7.598278 AGATTGTAGAGTAGACAAACAGAGTG 58.402 38.462 0.00 0.00 40.07 3.51
4608 5681 5.649782 ATCCAGAGTTGCACATTTTTAGG 57.350 39.130 0.00 0.00 0.00 2.69
4613 5686 3.019564 GCCTATCCAGAGTTGCACATTT 58.980 45.455 0.00 0.00 0.00 2.32
4692 5765 8.560374 CACGTCAGAAGATTCATGTATACTCTA 58.440 37.037 4.17 0.00 0.00 2.43
4693 5766 7.421599 CACGTCAGAAGATTCATGTATACTCT 58.578 38.462 4.17 0.00 0.00 3.24
4705 5778 2.932614 GCACTATGCACGTCAGAAGATT 59.067 45.455 0.00 0.00 44.26 2.40
4776 5849 6.434028 AGTGCTTTGGCTAAAATTATGTCTGA 59.566 34.615 0.00 0.00 39.59 3.27
4801 5874 1.702401 TGTCAACCATTAGAGTGGCCA 59.298 47.619 0.00 0.00 43.27 5.36
4838 5911 4.412796 TGGCATTAAGAGATGACAGGAG 57.587 45.455 0.00 0.00 40.06 3.69
4879 5952 7.041303 AGCAACAGATATCTATTCAATGCAGTG 60.041 37.037 8.08 8.08 32.76 3.66
4882 5955 6.769341 ACAGCAACAGATATCTATTCAATGCA 59.231 34.615 4.54 0.00 32.76 3.96
4892 5965 6.477053 AGTGTGATACAGCAACAGATATCT 57.523 37.500 0.00 0.00 0.00 1.98
4966 6039 9.860898 ATAACTTTCCAATATGCTGAAAACTTC 57.139 29.630 0.00 0.00 0.00 3.01
5112 6185 3.830178 TCCAGACATGTTTAGACCTCGAA 59.170 43.478 0.00 0.00 0.00 3.71
5180 6253 5.774184 TGCAGCAGATACAGATAGATTCTCT 59.226 40.000 0.00 0.00 29.93 3.10
5211 6284 2.658285 CACATATGGGCAAGGATGTGT 58.342 47.619 7.80 0.00 42.66 3.72
5661 6734 6.072618 GCTATCTCATGCATGAAATACAGCTT 60.073 38.462 28.39 10.28 36.18 3.74
6024 7104 5.718146 TCAACATGAAGAACTGTTTTGCAA 58.282 33.333 0.00 0.00 33.45 4.08
6044 7124 6.862209 GTGCAAATGGTACCATTAGATTCAA 58.138 36.000 34.78 16.60 44.86 2.69
6138 7218 5.253330 TCTGTTCCTAAATGGATGGTGTTC 58.747 41.667 0.00 0.00 45.68 3.18
6307 7388 3.403558 GGAGGGCTCTGGTGGGTC 61.404 72.222 0.00 0.00 0.00 4.46
6377 7458 0.751277 CAGGTGTGTGGTTTGAGGCA 60.751 55.000 0.00 0.00 0.00 4.75
6398 7479 5.534654 TGGTTTGATTAAACTGGGTGAAGAG 59.465 40.000 12.29 0.00 44.39 2.85
6501 7582 2.800096 GCAACATTTCACCTGCGTG 58.200 52.632 0.00 0.00 41.72 5.34
6511 7592 1.202394 TCAAGCAAGCACGCAACATTT 60.202 42.857 0.00 0.00 0.00 2.32
6549 7630 2.094803 TGCAATAACCAATGGACTTGCG 60.095 45.455 22.43 4.98 37.53 4.85
6650 7731 0.179023 TGCACAAGTCACAGCATCCA 60.179 50.000 0.00 0.00 31.05 3.41
6719 7883 5.667626 ACCTCAGGAGATTTGGATAAAGCTA 59.332 40.000 0.00 0.00 42.19 3.32
6747 7911 3.694072 GCAACCAACATAGCATAACTCCA 59.306 43.478 0.00 0.00 0.00 3.86
6922 8091 4.841443 TGATATTCATGCATCACAAGCC 57.159 40.909 0.00 0.00 0.00 4.35
7126 8295 1.477685 GGTTCTCCGGTTGAGGTGGA 61.478 60.000 0.00 0.00 41.76 4.02
7387 8556 1.540267 CCTCGGGCGATCTATTCTCT 58.460 55.000 0.00 0.00 0.00 3.10
7559 8728 1.661112 CGCAGAATTCTCCGGAAGTTC 59.339 52.381 11.07 10.15 34.70 3.01
7731 8900 3.069016 ACGACCATATGCAGACCGATTAA 59.931 43.478 0.00 0.00 0.00 1.40
7787 9592 1.523934 CTAAACCCACGTCGTGACAAC 59.476 52.381 26.53 0.00 35.23 3.32
7835 9640 1.201921 CGCGACCTGAAAAGCATGTAC 60.202 52.381 0.00 0.00 0.00 2.90
7839 9644 1.514678 TTGCGCGACCTGAAAAGCAT 61.515 50.000 12.10 0.00 34.44 3.79
7853 9658 1.444895 CCAGGCATTTCTGTTGCGC 60.445 57.895 0.00 0.00 41.07 6.09
7859 9664 0.321564 TGACCGTCCAGGCATTTCTG 60.322 55.000 0.00 0.00 46.52 3.02
7875 9680 3.992427 ACGGTTTTCTATTCTTCGGTGAC 59.008 43.478 0.00 0.00 0.00 3.67
7938 9744 4.963318 TGCTAGATACATCCCTTTGAGG 57.037 45.455 0.00 0.00 34.30 3.86
7939 9745 8.153550 AGTTAATGCTAGATACATCCCTTTGAG 58.846 37.037 0.00 0.00 0.00 3.02
7940 9746 8.034313 AGTTAATGCTAGATACATCCCTTTGA 57.966 34.615 0.00 0.00 0.00 2.69
7943 9749 8.034313 TCAAGTTAATGCTAGATACATCCCTT 57.966 34.615 0.00 0.00 0.00 3.95
7944 9750 7.618019 TCAAGTTAATGCTAGATACATCCCT 57.382 36.000 0.00 0.00 0.00 4.20
7945 9751 7.148340 GCATCAAGTTAATGCTAGATACATCCC 60.148 40.741 3.54 0.00 44.83 3.85
7946 9752 7.746929 GCATCAAGTTAATGCTAGATACATCC 58.253 38.462 3.54 0.00 44.83 3.51
7962 9768 9.872721 CTCACATAGATATATCAGCATCAAGTT 57.127 33.333 15.08 0.00 0.00 2.66
7963 9769 8.476447 CCTCACATAGATATATCAGCATCAAGT 58.524 37.037 15.08 0.00 0.00 3.16
7964 9770 7.927092 CCCTCACATAGATATATCAGCATCAAG 59.073 40.741 15.08 4.28 0.00 3.02
7965 9771 7.620888 TCCCTCACATAGATATATCAGCATCAA 59.379 37.037 15.08 0.00 0.00 2.57
7966 9772 7.069208 GTCCCTCACATAGATATATCAGCATCA 59.931 40.741 15.08 0.00 0.00 3.07
7967 9773 7.069208 TGTCCCTCACATAGATATATCAGCATC 59.931 40.741 15.08 0.00 0.00 3.91
7968 9774 6.899631 TGTCCCTCACATAGATATATCAGCAT 59.100 38.462 15.08 2.60 0.00 3.79
7969 9775 6.256053 TGTCCCTCACATAGATATATCAGCA 58.744 40.000 15.08 0.27 0.00 4.41
7970 9776 6.782082 TGTCCCTCACATAGATATATCAGC 57.218 41.667 15.08 0.00 0.00 4.26
7971 9777 7.123997 AGCTTGTCCCTCACATAGATATATCAG 59.876 40.741 15.08 6.86 33.90 2.90
7972 9778 6.956435 AGCTTGTCCCTCACATAGATATATCA 59.044 38.462 15.08 1.85 33.90 2.15
7973 9779 7.416964 AGCTTGTCCCTCACATAGATATATC 57.583 40.000 4.42 4.42 33.90 1.63
7974 9780 8.901472 TTAGCTTGTCCCTCACATAGATATAT 57.099 34.615 0.00 0.00 33.90 0.86
7975 9781 8.721133 TTTAGCTTGTCCCTCACATAGATATA 57.279 34.615 0.00 0.00 33.90 0.86
7976 9782 7.618019 TTTAGCTTGTCCCTCACATAGATAT 57.382 36.000 0.00 0.00 33.90 1.63
7977 9783 7.125811 AGTTTTAGCTTGTCCCTCACATAGATA 59.874 37.037 0.00 0.00 33.90 1.98
7978 9784 5.957771 TTTAGCTTGTCCCTCACATAGAT 57.042 39.130 0.00 0.00 33.90 1.98
7979 9785 5.248477 AGTTTTAGCTTGTCCCTCACATAGA 59.752 40.000 0.00 0.00 33.90 1.98
7980 9786 5.491982 AGTTTTAGCTTGTCCCTCACATAG 58.508 41.667 0.00 0.00 33.90 2.23
7981 9787 5.499004 AGTTTTAGCTTGTCCCTCACATA 57.501 39.130 0.00 0.00 33.90 2.29
7982 9788 4.373156 AGTTTTAGCTTGTCCCTCACAT 57.627 40.909 0.00 0.00 33.90 3.21
7983 9789 3.857157 AGTTTTAGCTTGTCCCTCACA 57.143 42.857 0.00 0.00 0.00 3.58
7984 9790 4.489679 CAAGTTTTAGCTTGTCCCTCAC 57.510 45.455 0.00 0.00 40.52 3.51
7993 9799 4.584743 CCTTTGAGGGACAAGTTTTAGCTT 59.415 41.667 0.00 0.00 39.77 3.74
7994 9800 4.145052 CCTTTGAGGGACAAGTTTTAGCT 58.855 43.478 0.00 0.00 39.77 3.32
7995 9801 4.505313 CCTTTGAGGGACAAGTTTTAGC 57.495 45.455 0.00 0.00 39.77 3.09
8008 9814 4.963318 TGCTAGATACATCCCTTTGAGG 57.037 45.455 0.00 0.00 34.30 3.86
8009 9815 8.153550 AGTTAATGCTAGATACATCCCTTTGAG 58.846 37.037 0.00 0.00 0.00 3.02
8010 9816 8.034313 AGTTAATGCTAGATACATCCCTTTGA 57.966 34.615 0.00 0.00 0.00 2.69
8011 9817 8.562892 CAAGTTAATGCTAGATACATCCCTTTG 58.437 37.037 0.00 0.00 0.00 2.77
8012 9818 8.494433 TCAAGTTAATGCTAGATACATCCCTTT 58.506 33.333 0.00 0.00 0.00 3.11
8013 9819 8.034313 TCAAGTTAATGCTAGATACATCCCTT 57.966 34.615 0.00 0.00 0.00 3.95
8014 9820 7.618019 TCAAGTTAATGCTAGATACATCCCT 57.382 36.000 0.00 0.00 0.00 4.20
8015 9821 7.148340 GCATCAAGTTAATGCTAGATACATCCC 60.148 40.741 3.54 0.00 44.83 3.85
8016 9822 7.746929 GCATCAAGTTAATGCTAGATACATCC 58.253 38.462 3.54 0.00 44.83 3.51
8032 9838 9.872721 CTCACATAGATATATCAGCATCAAGTT 57.127 33.333 15.08 0.00 0.00 2.66
8033 9839 8.476447 CCTCACATAGATATATCAGCATCAAGT 58.524 37.037 15.08 0.00 0.00 3.16
8034 9840 7.927092 CCCTCACATAGATATATCAGCATCAAG 59.073 40.741 15.08 4.28 0.00 3.02
8035 9841 7.620888 TCCCTCACATAGATATATCAGCATCAA 59.379 37.037 15.08 0.00 0.00 2.57
8036 9842 7.069208 GTCCCTCACATAGATATATCAGCATCA 59.931 40.741 15.08 0.00 0.00 3.07
8037 9843 7.069208 TGTCCCTCACATAGATATATCAGCATC 59.931 40.741 15.08 0.00 0.00 3.91
8038 9844 6.899631 TGTCCCTCACATAGATATATCAGCAT 59.100 38.462 15.08 2.60 0.00 3.79
8039 9845 6.256053 TGTCCCTCACATAGATATATCAGCA 58.744 40.000 15.08 0.27 0.00 4.41
8040 9846 6.782082 TGTCCCTCACATAGATATATCAGC 57.218 41.667 15.08 0.00 0.00 4.26
8041 9847 7.123997 AGCTTGTCCCTCACATAGATATATCAG 59.876 40.741 15.08 6.86 33.90 2.90
8042 9848 6.956435 AGCTTGTCCCTCACATAGATATATCA 59.044 38.462 15.08 1.85 33.90 2.15
8043 9849 7.416964 AGCTTGTCCCTCACATAGATATATC 57.583 40.000 4.42 4.42 33.90 1.63
8044 9850 7.805083 AAGCTTGTCCCTCACATAGATATAT 57.195 36.000 0.00 0.00 33.90 0.86
8045 9851 7.618019 AAAGCTTGTCCCTCACATAGATATA 57.382 36.000 0.00 0.00 33.90 0.86
8046 9852 6.506538 AAAGCTTGTCCCTCACATAGATAT 57.493 37.500 0.00 0.00 33.90 1.63
8047 9853 5.957771 AAAGCTTGTCCCTCACATAGATA 57.042 39.130 0.00 0.00 33.90 1.98
8048 9854 4.851639 AAAGCTTGTCCCTCACATAGAT 57.148 40.909 0.00 0.00 33.90 1.98
8049 9855 4.287067 AGAAAAGCTTGTCCCTCACATAGA 59.713 41.667 13.25 0.00 33.90 1.98
8050 9856 4.394300 CAGAAAAGCTTGTCCCTCACATAG 59.606 45.833 13.25 0.00 33.90 2.23
8051 9857 4.326826 CAGAAAAGCTTGTCCCTCACATA 58.673 43.478 13.25 0.00 33.90 2.29
8052 9858 3.152341 CAGAAAAGCTTGTCCCTCACAT 58.848 45.455 13.25 0.00 33.90 3.21
8053 9859 2.575532 CAGAAAAGCTTGTCCCTCACA 58.424 47.619 13.25 0.00 0.00 3.58
8054 9860 1.882623 CCAGAAAAGCTTGTCCCTCAC 59.117 52.381 13.25 0.00 0.00 3.51
8055 9861 1.774254 TCCAGAAAAGCTTGTCCCTCA 59.226 47.619 13.25 0.00 0.00 3.86
8056 9862 2.155279 GTCCAGAAAAGCTTGTCCCTC 58.845 52.381 13.25 0.00 0.00 4.30
8057 9863 1.494721 TGTCCAGAAAAGCTTGTCCCT 59.505 47.619 13.25 0.00 0.00 4.20
8058 9864 1.882623 CTGTCCAGAAAAGCTTGTCCC 59.117 52.381 13.25 0.14 0.00 4.46
8059 9865 2.851195 TCTGTCCAGAAAAGCTTGTCC 58.149 47.619 13.25 0.00 33.91 4.02
8060 9866 3.251972 CCTTCTGTCCAGAAAAGCTTGTC 59.748 47.826 8.73 8.73 45.75 3.18
8061 9867 3.117888 TCCTTCTGTCCAGAAAAGCTTGT 60.118 43.478 10.68 0.00 45.75 3.16
8062 9868 3.480470 TCCTTCTGTCCAGAAAAGCTTG 58.520 45.455 10.68 0.00 45.75 4.01
8063 9869 3.137360 ACTCCTTCTGTCCAGAAAAGCTT 59.863 43.478 10.68 0.00 45.75 3.74
8064 9870 2.708325 ACTCCTTCTGTCCAGAAAAGCT 59.292 45.455 10.68 0.00 45.75 3.74
8065 9871 3.133141 ACTCCTTCTGTCCAGAAAAGC 57.867 47.619 10.68 0.00 45.75 3.51
8066 9872 5.730296 TCTACTCCTTCTGTCCAGAAAAG 57.270 43.478 10.68 12.33 45.75 2.27
8067 9873 6.099845 ACTTTCTACTCCTTCTGTCCAGAAAA 59.900 38.462 10.68 2.33 45.75 2.29
8068 9874 5.602978 ACTTTCTACTCCTTCTGTCCAGAAA 59.397 40.000 10.68 0.00 45.75 2.52
8069 9875 5.148502 ACTTTCTACTCCTTCTGTCCAGAA 58.851 41.667 9.25 9.25 44.47 3.02
8070 9876 4.742012 ACTTTCTACTCCTTCTGTCCAGA 58.258 43.478 0.00 0.00 35.27 3.86
8071 9877 6.391537 GTTACTTTCTACTCCTTCTGTCCAG 58.608 44.000 0.00 0.00 0.00 3.86
8072 9878 5.245526 GGTTACTTTCTACTCCTTCTGTCCA 59.754 44.000 0.00 0.00 0.00 4.02
8073 9879 5.337410 GGGTTACTTTCTACTCCTTCTGTCC 60.337 48.000 0.00 0.00 0.00 4.02
8074 9880 5.621781 CGGGTTACTTTCTACTCCTTCTGTC 60.622 48.000 0.00 0.00 0.00 3.51
8075 9881 4.220163 CGGGTTACTTTCTACTCCTTCTGT 59.780 45.833 0.00 0.00 0.00 3.41
8076 9882 4.381718 CCGGGTTACTTTCTACTCCTTCTG 60.382 50.000 0.00 0.00 0.00 3.02
8077 9883 3.768215 CCGGGTTACTTTCTACTCCTTCT 59.232 47.826 0.00 0.00 0.00 2.85
8078 9884 3.678252 GCCGGGTTACTTTCTACTCCTTC 60.678 52.174 2.18 0.00 0.00 3.46
8079 9885 2.235650 GCCGGGTTACTTTCTACTCCTT 59.764 50.000 2.18 0.00 0.00 3.36
8080 9886 1.829849 GCCGGGTTACTTTCTACTCCT 59.170 52.381 2.18 0.00 0.00 3.69
8081 9887 1.551883 TGCCGGGTTACTTTCTACTCC 59.448 52.381 2.18 0.00 0.00 3.85
8082 9888 3.259902 CTTGCCGGGTTACTTTCTACTC 58.740 50.000 2.18 0.00 0.00 2.59
8083 9889 2.614734 GCTTGCCGGGTTACTTTCTACT 60.615 50.000 2.18 0.00 0.00 2.57
8084 9890 1.736126 GCTTGCCGGGTTACTTTCTAC 59.264 52.381 2.18 0.00 0.00 2.59
8085 9891 1.339342 GGCTTGCCGGGTTACTTTCTA 60.339 52.381 2.18 0.00 0.00 2.10
8086 9892 0.608308 GGCTTGCCGGGTTACTTTCT 60.608 55.000 2.18 0.00 0.00 2.52
8087 9893 0.608308 AGGCTTGCCGGGTTACTTTC 60.608 55.000 2.18 0.00 0.00 2.62
8088 9894 0.178973 AAGGCTTGCCGGGTTACTTT 60.179 50.000 2.18 0.00 0.00 2.66
8089 9895 0.178973 AAAGGCTTGCCGGGTTACTT 60.179 50.000 2.18 0.00 0.00 2.24
8090 9896 0.178973 AAAAGGCTTGCCGGGTTACT 60.179 50.000 2.18 0.00 0.00 2.24
8091 9897 0.038618 CAAAAGGCTTGCCGGGTTAC 60.039 55.000 2.18 0.00 0.00 2.50
8092 9898 0.468400 ACAAAAGGCTTGCCGGGTTA 60.468 50.000 2.18 0.00 0.00 2.85
8093 9899 1.744320 GACAAAAGGCTTGCCGGGTT 61.744 55.000 2.18 0.00 0.00 4.11
8094 9900 2.123468 ACAAAAGGCTTGCCGGGT 60.123 55.556 2.18 0.88 0.00 5.28
8095 9901 2.650778 GACAAAAGGCTTGCCGGG 59.349 61.111 2.18 0.00 0.00 5.73
8096 9902 2.650778 GGACAAAAGGCTTGCCGG 59.349 61.111 0.00 0.00 0.00 6.13
8097 9903 2.255252 CGGACAAAAGGCTTGCCG 59.745 61.111 13.90 13.90 34.65 5.69
8098 9904 1.285950 GACGGACAAAAGGCTTGCC 59.714 57.895 0.00 2.97 0.00 4.52
8117 9923 1.067516 CCTAAAATCATTGGCGGGCAG 59.932 52.381 3.91 0.00 0.00 4.85
8127 9933 5.010719 TCCTACGATCGAAGCCTAAAATCAT 59.989 40.000 24.34 0.00 0.00 2.45
8138 9944 2.214347 TCAGAGCTCCTACGATCGAAG 58.786 52.381 24.34 13.73 0.00 3.79
8139 9945 2.327200 TCAGAGCTCCTACGATCGAA 57.673 50.000 24.34 3.12 0.00 3.71
8146 9952 3.533606 TGCTTCAATCAGAGCTCCTAC 57.466 47.619 10.93 0.00 0.00 3.18
8292 10101 9.733556 ACCGTCTATTATTGCCATTGATAATTA 57.266 29.630 0.00 0.00 32.37 1.40
8293 10102 8.635765 ACCGTCTATTATTGCCATTGATAATT 57.364 30.769 0.00 0.00 32.37 1.40
8294 10103 9.162764 GTACCGTCTATTATTGCCATTGATAAT 57.837 33.333 0.00 0.00 34.02 1.28
8295 10104 8.151596 TGTACCGTCTATTATTGCCATTGATAA 58.848 33.333 0.00 0.00 0.00 1.75
8296 10105 7.672240 TGTACCGTCTATTATTGCCATTGATA 58.328 34.615 0.00 0.00 0.00 2.15
8297 10106 6.530120 TGTACCGTCTATTATTGCCATTGAT 58.470 36.000 0.00 0.00 0.00 2.57
8298 10107 5.919755 TGTACCGTCTATTATTGCCATTGA 58.080 37.500 0.00 0.00 0.00 2.57
8299 10108 6.427150 GTTGTACCGTCTATTATTGCCATTG 58.573 40.000 0.00 0.00 0.00 2.82
8300 10109 5.529800 GGTTGTACCGTCTATTATTGCCATT 59.470 40.000 0.00 0.00 0.00 3.16
8301 10110 5.061179 GGTTGTACCGTCTATTATTGCCAT 58.939 41.667 0.00 0.00 0.00 4.40
8302 10111 4.444536 GGTTGTACCGTCTATTATTGCCA 58.555 43.478 0.00 0.00 0.00 4.92
8324 10133 4.829064 TTTTGGTCTCATTGTCTTTCCG 57.171 40.909 0.00 0.00 0.00 4.30
8369 10178 5.105756 GGAAGACCCACCAGTATGATTTTTG 60.106 44.000 0.00 0.00 33.83 2.44
8404 10213 9.891828 CAACATAGTTTTTAGACAGCAACATAA 57.108 29.630 0.00 0.00 0.00 1.90
8410 10219 6.544197 TGGTTCAACATAGTTTTTAGACAGCA 59.456 34.615 0.00 0.00 0.00 4.41
8436 10245 8.715191 TTGCACATGTTTCTTTTCTTTATTGT 57.285 26.923 0.00 0.00 0.00 2.71
8441 10250 5.637387 ACGTTTGCACATGTTTCTTTTCTTT 59.363 32.000 0.00 0.00 0.00 2.52
8463 10272 4.675565 CGAGTAGTTATTGCATACAGGACG 59.324 45.833 0.00 0.00 0.00 4.79
8468 10277 4.039703 GCGACGAGTAGTTATTGCATACA 58.960 43.478 0.00 0.00 0.00 2.29
8483 10292 3.971150 AGATCTTATTTCTGGCGACGAG 58.029 45.455 0.00 0.00 0.00 4.18
8517 10326 6.506500 TTTGTGTTGCATGGAAATGTTTTT 57.493 29.167 0.00 0.00 0.00 1.94
8529 10338 7.375106 TCTTTCAAATTGTTTTGTGTTGCAT 57.625 28.000 0.00 0.00 42.37 3.96
8530 10339 6.791887 TCTTTCAAATTGTTTTGTGTTGCA 57.208 29.167 0.00 0.00 42.37 4.08
8545 10354 3.679980 CGGCTTCGATCTCTTCTTTCAAA 59.320 43.478 0.00 0.00 35.61 2.69
8556 10365 0.320374 TGGTTTGACGGCTTCGATCT 59.680 50.000 0.00 0.00 37.63 2.75
8582 10391 4.212214 GTCAGTCGAAAGAAGCAGTTGATT 59.788 41.667 0.00 0.00 45.01 2.57
8583 10392 3.743396 GTCAGTCGAAAGAAGCAGTTGAT 59.257 43.478 0.00 0.00 45.01 2.57
8588 10397 2.219674 GTGTGTCAGTCGAAAGAAGCAG 59.780 50.000 0.00 0.00 45.01 4.24
8597 10406 2.536365 GACAGTTTGTGTGTCAGTCGA 58.464 47.619 0.00 0.00 43.30 4.20
8613 10422 5.918011 GTCGGCTCTCTTTAGATATTGACAG 59.082 44.000 0.00 0.00 0.00 3.51
8625 10434 2.222027 CCAAACTTGTCGGCTCTCTTT 58.778 47.619 0.00 0.00 0.00 2.52
8646 10455 1.272807 GCCTGTGAGGGTAGGTGTTA 58.727 55.000 0.00 0.00 35.37 2.41
8649 10458 2.670148 GGGCCTGTGAGGGTAGGTG 61.670 68.421 0.84 0.00 35.37 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.