Multiple sequence alignment - TraesCS1B01G123000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G123000 chr1B 100.000 8680 0 0 1 8680 148443351 148434672 0.000000e+00 16030.0
1 TraesCS1B01G123000 chr1D 95.130 7906 262 48 845 8680 93120229 93112377 0.000000e+00 12353.0
2 TraesCS1B01G123000 chr1D 80.952 126 22 2 627 750 254638136 254638261 1.990000e-16 99.0
3 TraesCS1B01G123000 chr1A 94.482 6071 244 38 537 6552 91051668 91057702 0.000000e+00 9271.0
4 TraesCS1B01G123000 chr1A 94.601 2167 86 13 6539 8680 91057746 91059906 0.000000e+00 3325.0
5 TraesCS1B01G123000 chr1A 84.010 419 50 12 135 543 203859399 203858988 3.800000e-103 387.0
6 TraesCS1B01G123000 chr1A 79.167 120 23 2 633 750 547826743 547826624 2.010000e-11 82.4
7 TraesCS1B01G123000 chr6B 94.953 535 23 4 1 534 112372631 112373162 0.000000e+00 835.0
8 TraesCS1B01G123000 chr6B 95.057 526 22 4 1 524 54754745 54755268 0.000000e+00 824.0
9 TraesCS1B01G123000 chr5B 95.247 526 21 4 1 524 121265513 121264990 0.000000e+00 830.0
10 TraesCS1B01G123000 chr5B 95.048 525 24 2 1 523 121272546 121272022 0.000000e+00 824.0
11 TraesCS1B01G123000 chr5B 91.863 553 33 10 1 547 677493636 677494182 0.000000e+00 761.0
12 TraesCS1B01G123000 chr4B 95.238 525 22 3 1 523 540160620 540161143 0.000000e+00 828.0
13 TraesCS1B01G123000 chr2B 95.238 525 20 5 1 523 223741198 223741719 0.000000e+00 826.0
14 TraesCS1B01G123000 chr2B 95.057 526 21 5 1 524 780001079 780001601 0.000000e+00 822.0
15 TraesCS1B01G123000 chr2B 80.686 554 68 33 4 543 709023928 709023400 2.270000e-105 394.0
16 TraesCS1B01G123000 chr4A 94.727 531 22 6 1 529 665914089 665913563 0.000000e+00 821.0
17 TraesCS1B01G123000 chr4A 81.386 505 65 21 53 549 57031769 57031286 1.370000e-102 385.0
18 TraesCS1B01G123000 chr4A 75.294 170 39 3 584 750 124811129 124811298 2.600000e-10 78.7
19 TraesCS1B01G123000 chr7D 81.031 543 62 31 16 542 418940039 418940556 2.270000e-105 394.0
20 TraesCS1B01G123000 chr7D 80.258 542 69 30 16 542 178917958 178918476 2.960000e-99 374.0
21 TraesCS1B01G123000 chr3A 83.848 421 50 13 135 543 534457123 534456709 1.370000e-102 385.0
22 TraesCS1B01G123000 chr3A 82.090 268 29 9 3038 3287 174379836 174379570 2.460000e-50 211.0
23 TraesCS1B01G123000 chr5A 82.675 456 49 21 104 542 183990561 183990119 2.290000e-100 377.0
24 TraesCS1B01G123000 chr2D 80.983 468 58 24 84 542 54032978 54032533 8.340000e-90 342.0
25 TraesCS1B01G123000 chr2D 90.361 83 8 0 1901 1983 25046736 25046818 9.210000e-20 110.0
26 TraesCS1B01G123000 chr2D 80.000 120 22 2 633 750 619938515 619938396 4.320000e-13 87.9
27 TraesCS1B01G123000 chr7A 82.171 258 31 7 3029 3272 722273930 722274186 3.180000e-49 207.0
28 TraesCS1B01G123000 chr7A 80.159 126 22 3 633 756 5855459 5855335 3.340000e-14 91.6
29 TraesCS1B01G123000 chr7A 75.429 175 39 4 579 750 596740217 596740390 2.010000e-11 82.4
30 TraesCS1B01G123000 chr7B 94.444 72 4 0 1913 1984 623567364 623567293 2.560000e-20 111.0
31 TraesCS1B01G123000 chrUn 92.208 77 5 1 1908 1984 348740503 348740578 3.310000e-19 108.0
32 TraesCS1B01G123000 chrUn 92.208 77 5 1 1908 1984 364369455 364369530 3.310000e-19 108.0
33 TraesCS1B01G123000 chrUn 92.208 77 5 1 1908 1984 374196432 374196357 3.310000e-19 108.0
34 TraesCS1B01G123000 chrUn 92.208 77 5 1 1908 1984 374198290 374198215 3.310000e-19 108.0
35 TraesCS1B01G123000 chrUn 92.208 77 5 1 1908 1984 374285593 374285518 3.310000e-19 108.0
36 TraesCS1B01G123000 chr4D 80.833 120 21 2 633 750 465952454 465952335 9.280000e-15 93.5
37 TraesCS1B01G123000 chr3B 80.833 120 21 2 633 750 3751217 3751098 9.280000e-15 93.5
38 TraesCS1B01G123000 chr5D 79.070 129 22 3 627 750 543616297 543616169 5.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G123000 chr1B 148434672 148443351 8679 True 16030 16030 100.0000 1 8680 1 chr1B.!!$R1 8679
1 TraesCS1B01G123000 chr1D 93112377 93120229 7852 True 12353 12353 95.1300 845 8680 1 chr1D.!!$R1 7835
2 TraesCS1B01G123000 chr1A 91051668 91059906 8238 False 6298 9271 94.5415 537 8680 2 chr1A.!!$F1 8143
3 TraesCS1B01G123000 chr6B 112372631 112373162 531 False 835 835 94.9530 1 534 1 chr6B.!!$F2 533
4 TraesCS1B01G123000 chr6B 54754745 54755268 523 False 824 824 95.0570 1 524 1 chr6B.!!$F1 523
5 TraesCS1B01G123000 chr5B 121264990 121265513 523 True 830 830 95.2470 1 524 1 chr5B.!!$R1 523
6 TraesCS1B01G123000 chr5B 121272022 121272546 524 True 824 824 95.0480 1 523 1 chr5B.!!$R2 522
7 TraesCS1B01G123000 chr5B 677493636 677494182 546 False 761 761 91.8630 1 547 1 chr5B.!!$F1 546
8 TraesCS1B01G123000 chr4B 540160620 540161143 523 False 828 828 95.2380 1 523 1 chr4B.!!$F1 522
9 TraesCS1B01G123000 chr2B 223741198 223741719 521 False 826 826 95.2380 1 523 1 chr2B.!!$F1 522
10 TraesCS1B01G123000 chr2B 780001079 780001601 522 False 822 822 95.0570 1 524 1 chr2B.!!$F2 523
11 TraesCS1B01G123000 chr2B 709023400 709023928 528 True 394 394 80.6860 4 543 1 chr2B.!!$R1 539
12 TraesCS1B01G123000 chr4A 665913563 665914089 526 True 821 821 94.7270 1 529 1 chr4A.!!$R2 528
13 TraesCS1B01G123000 chr7D 418940039 418940556 517 False 394 394 81.0310 16 542 1 chr7D.!!$F2 526
14 TraesCS1B01G123000 chr7D 178917958 178918476 518 False 374 374 80.2580 16 542 1 chr7D.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 645 0.162082 TCGGTTTTCGTTCATTCGCG 59.838 50.000 0.00 0.00 40.32 5.87 F
1005 1038 0.038709 CATTCTCTCCCCTCGCGATC 60.039 60.000 10.36 0.00 0.00 3.69 F
1006 1039 0.178975 ATTCTCTCCCCTCGCGATCT 60.179 55.000 10.36 0.00 0.00 2.75 F
1339 1374 0.670162 AGCAAGCAAACATGAAGCGT 59.330 45.000 0.00 0.00 0.00 5.07 F
1971 2008 2.610859 GCAGGGTCCAGGGAAGGA 60.611 66.667 0.00 0.00 34.64 3.36 F
3804 3902 2.203684 CAAGGGCAGGCCTTTGGT 60.204 61.111 25.67 1.73 45.74 3.67 F
4152 4250 0.392998 GACAGGACATGTTGCCGGAT 60.393 55.000 5.05 0.00 44.17 4.18 F
4382 4480 1.950828 CCACAGGCTGAAGCAGATAG 58.049 55.000 23.66 0.00 44.36 2.08 F
6004 6115 0.612744 TTCGGAGGATGTGCATGACA 59.387 50.000 0.00 0.00 39.53 3.58 F
6857 7034 1.067142 TCGAGCAATACGAAACAGGCT 60.067 47.619 0.00 0.00 36.84 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 1952 1.605165 CACCGGGCTGCCCTTTTTA 60.605 57.895 33.39 0.00 42.67 1.52 R
2400 2448 1.740585 CTCAGATCACGAGACTCGGTT 59.259 52.381 27.39 12.35 45.59 4.44 R
2776 2824 6.651643 ACGCACGCCAAAGGAATATAATATTA 59.348 34.615 0.00 0.00 0.00 0.98 R
3069 3117 3.134442 ACAATGTTTCCCATGCAAACACT 59.866 39.130 18.38 9.16 44.46 3.55 R
3947 4045 1.364626 GCAACATCAGACTGAGCCGG 61.365 60.000 11.52 0.00 0.00 6.13 R
4828 4929 1.066605 ACCACGGAGATACATACACGC 59.933 52.381 0.00 0.00 0.00 5.34 R
5429 5533 1.944177 ACTCTGAGCTAGCCTTTCCA 58.056 50.000 12.13 1.30 0.00 3.53 R
6168 6280 6.299141 AGTTTGTAAGACATTCCACTGTGAT 58.701 36.000 9.86 0.00 0.00 3.06 R
7246 7428 0.108615 CACCCCTCGCAGTTGTCTAG 60.109 60.000 0.00 0.00 0.00 2.43 R
7702 7893 0.743097 AGAAGCACGTCGGTATACCC 59.257 55.000 16.47 2.20 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 33 2.936032 GGGCACTCCACCTCCCTT 60.936 66.667 0.00 0.00 35.87 3.95
244 269 2.228059 CTGCTGGATCATCATCAACCC 58.772 52.381 0.00 0.00 0.00 4.11
275 300 2.238144 CCTTGCTGGATCAAGAAGGAGA 59.762 50.000 17.24 0.00 44.61 3.71
285 310 4.179926 TCAAGAAGGAGAAGACGTCATG 57.820 45.455 19.50 1.16 0.00 3.07
328 354 1.300697 GAGGTGCTGTTCGTTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
525 553 2.637025 CAACGTTCCCCAACAGCG 59.363 61.111 0.00 0.00 32.14 5.18
529 557 0.179051 ACGTTCCCCAACAGCGTTTA 60.179 50.000 0.00 0.00 31.37 2.01
530 558 0.945813 CGTTCCCCAACAGCGTTTAA 59.054 50.000 0.00 0.00 32.14 1.52
531 559 1.334329 CGTTCCCCAACAGCGTTTAAC 60.334 52.381 0.00 0.00 32.14 2.01
532 560 1.677052 GTTCCCCAACAGCGTTTAACA 59.323 47.619 0.00 0.00 32.14 2.41
533 561 2.279935 TCCCCAACAGCGTTTAACAT 57.720 45.000 0.00 0.00 0.00 2.71
534 562 2.588620 TCCCCAACAGCGTTTAACATT 58.411 42.857 0.00 0.00 0.00 2.71
535 563 3.752665 TCCCCAACAGCGTTTAACATTA 58.247 40.909 0.00 0.00 0.00 1.90
539 567 4.339429 CCAACAGCGTTTAACATTATCGG 58.661 43.478 0.00 0.00 0.00 4.18
541 569 4.852609 ACAGCGTTTAACATTATCGGAC 57.147 40.909 0.00 0.00 0.00 4.79
548 576 5.119588 CGTTTAACATTATCGGACTGTGTGT 59.880 40.000 0.00 0.00 0.00 3.72
551 579 4.537135 ACATTATCGGACTGTGTGTCTT 57.463 40.909 0.00 0.00 44.74 3.01
554 582 0.243907 ATCGGACTGTGTGTCTTCGG 59.756 55.000 0.00 0.00 44.74 4.30
560 588 1.000955 ACTGTGTGTCTTCGGTGGATC 59.999 52.381 0.00 0.00 0.00 3.36
565 593 2.069273 GTGTCTTCGGTGGATCTTGTG 58.931 52.381 0.00 0.00 0.00 3.33
571 599 3.526931 TCGGTGGATCTTGTGAGATTC 57.473 47.619 0.00 0.00 42.66 2.52
572 600 2.831526 TCGGTGGATCTTGTGAGATTCA 59.168 45.455 0.00 0.00 44.06 2.57
573 601 3.118992 TCGGTGGATCTTGTGAGATTCAG 60.119 47.826 0.00 0.00 46.27 3.02
578 606 5.471456 GTGGATCTTGTGAGATTCAGTTGTT 59.529 40.000 0.00 0.00 46.27 2.83
582 610 7.255242 GGATCTTGTGAGATTCAGTTGTTTTCA 60.255 37.037 0.00 0.00 42.66 2.69
583 611 7.019774 TCTTGTGAGATTCAGTTGTTTTCAG 57.980 36.000 0.00 0.00 0.00 3.02
587 615 5.066505 GTGAGATTCAGTTGTTTTCAGTGGT 59.933 40.000 0.00 0.00 0.00 4.16
596 624 4.527509 TGTTTTCAGTGGTTTTGCTTGA 57.472 36.364 0.00 0.00 0.00 3.02
597 625 5.083533 TGTTTTCAGTGGTTTTGCTTGAT 57.916 34.783 0.00 0.00 0.00 2.57
606 634 4.026062 GTGGTTTTGCTTGATTCGGTTTTC 60.026 41.667 0.00 0.00 0.00 2.29
609 637 3.701532 TTGCTTGATTCGGTTTTCGTT 57.298 38.095 0.00 0.00 40.32 3.85
614 642 4.320953 GCTTGATTCGGTTTTCGTTCATTC 59.679 41.667 0.00 0.00 40.32 2.67
617 645 0.162082 TCGGTTTTCGTTCATTCGCG 59.838 50.000 0.00 0.00 40.32 5.87
623 651 0.940519 TTCGTTCATTCGCGTCCGTT 60.941 50.000 5.77 0.00 35.54 4.44
637 665 2.094906 CGTCCGTTCATCTACTGGTTGA 60.095 50.000 0.00 0.00 0.00 3.18
656 684 4.576216 TGAATCCTTCTGATCTACGCTC 57.424 45.455 0.00 0.00 31.61 5.03
661 689 3.954258 TCCTTCTGATCTACGCTCATCAA 59.046 43.478 0.00 0.00 0.00 2.57
662 690 4.047822 CCTTCTGATCTACGCTCATCAAC 58.952 47.826 0.00 0.00 0.00 3.18
664 692 4.718940 TCTGATCTACGCTCATCAACAA 57.281 40.909 0.00 0.00 0.00 2.83
682 710 6.093404 TCAACAACAACGATTGCTGTTTTTA 58.907 32.000 13.26 4.42 44.86 1.52
685 713 6.039616 ACAACAACGATTGCTGTTTTTATGT 58.960 32.000 0.00 0.00 36.64 2.29
688 716 5.685511 ACAACGATTGCTGTTTTTATGTGTC 59.314 36.000 0.00 0.00 0.00 3.67
697 725 5.085636 TGTTTTTATGTGTCGGTTCTTCG 57.914 39.130 0.00 0.00 0.00 3.79
700 728 0.533491 TATGTGTCGGTTCTTCGGGG 59.467 55.000 0.00 0.00 0.00 5.73
708 736 0.255033 GGTTCTTCGGGGCTTACCAT 59.745 55.000 0.00 0.00 42.91 3.55
717 745 2.618045 CGGGGCTTACCATGAAGACTTT 60.618 50.000 0.00 0.00 42.91 2.66
728 757 4.859798 CCATGAAGACTTTCGACTGTCTAC 59.140 45.833 16.71 0.00 42.02 2.59
734 763 6.821031 AGACTTTCGACTGTCTACTACAAT 57.179 37.500 15.34 0.00 41.19 2.71
746 775 5.013287 TGTCTACTACAATAAGGTTTGCCCA 59.987 40.000 0.00 0.00 34.29 5.36
764 793 4.397348 GCTTTCGGCTCCTTCCAA 57.603 55.556 0.00 0.00 38.06 3.53
771 800 0.962356 CGGCTCCTTCCAATGCTTGT 60.962 55.000 0.00 0.00 0.00 3.16
778 807 2.673368 CCTTCCAATGCTTGTAGTCGTC 59.327 50.000 0.00 0.00 0.00 4.20
779 808 3.325870 CTTCCAATGCTTGTAGTCGTCA 58.674 45.455 0.00 0.00 0.00 4.35
781 810 1.394917 CCAATGCTTGTAGTCGTCAGC 59.605 52.381 0.00 0.00 0.00 4.26
783 812 2.455674 ATGCTTGTAGTCGTCAGCAA 57.544 45.000 0.00 0.00 35.86 3.91
787 816 1.457303 CTTGTAGTCGTCAGCAAGTGC 59.543 52.381 0.00 0.00 42.49 4.40
802 831 4.253685 GCAAGTGCTCTATGAAGGTGTAA 58.746 43.478 0.00 0.00 38.21 2.41
834 863 9.897744 ATTGTTTATGTTCTTTGTACTGTCATG 57.102 29.630 0.00 0.00 0.00 3.07
835 864 8.669946 TGTTTATGTTCTTTGTACTGTCATGA 57.330 30.769 0.00 0.00 0.00 3.07
836 865 8.556194 TGTTTATGTTCTTTGTACTGTCATGAC 58.444 33.333 19.27 19.27 0.00 3.06
837 866 8.556194 GTTTATGTTCTTTGTACTGTCATGACA 58.444 33.333 26.33 26.33 39.32 3.58
848 877 9.447157 TTGTACTGTCATGACATTTGATGAATA 57.553 29.630 28.00 3.13 41.01 1.75
852 881 9.404848 ACTGTCATGACATTTGATGAATAGATT 57.595 29.630 28.00 0.00 41.01 2.40
963 993 4.426313 CCCGCCCTTCCCCAACTC 62.426 72.222 0.00 0.00 0.00 3.01
965 995 3.646715 CGCCCTTCCCCAACTCCA 61.647 66.667 0.00 0.00 0.00 3.86
966 996 2.035783 GCCCTTCCCCAACTCCAC 59.964 66.667 0.00 0.00 0.00 4.02
967 997 2.539081 GCCCTTCCCCAACTCCACT 61.539 63.158 0.00 0.00 0.00 4.00
970 1002 0.326264 CCTTCCCCAACTCCACTCTG 59.674 60.000 0.00 0.00 0.00 3.35
984 1016 1.515952 CTCTGCGTCGCTCTCCTTG 60.516 63.158 19.50 0.42 0.00 3.61
995 1027 1.474855 GCTCTCCTTGCCATTCTCTCC 60.475 57.143 0.00 0.00 0.00 3.71
998 1031 0.253347 TCCTTGCCATTCTCTCCCCT 60.253 55.000 0.00 0.00 0.00 4.79
999 1032 0.182299 CCTTGCCATTCTCTCCCCTC 59.818 60.000 0.00 0.00 0.00 4.30
1000 1033 0.179062 CTTGCCATTCTCTCCCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
1001 1034 2.110006 GCCATTCTCTCCCCTCGC 59.890 66.667 0.00 0.00 0.00 5.03
1002 1035 2.419198 CCATTCTCTCCCCTCGCG 59.581 66.667 0.00 0.00 0.00 5.87
1003 1036 2.127869 CCATTCTCTCCCCTCGCGA 61.128 63.158 9.26 9.26 0.00 5.87
1004 1037 1.467678 CCATTCTCTCCCCTCGCGAT 61.468 60.000 10.36 0.00 0.00 4.58
1005 1038 0.038709 CATTCTCTCCCCTCGCGATC 60.039 60.000 10.36 0.00 0.00 3.69
1006 1039 0.178975 ATTCTCTCCCCTCGCGATCT 60.179 55.000 10.36 0.00 0.00 2.75
1007 1040 0.820074 TTCTCTCCCCTCGCGATCTC 60.820 60.000 10.36 0.00 0.00 2.75
1108 1143 2.182030 GCTCGACAACTCCTCCGG 59.818 66.667 0.00 0.00 0.00 5.14
1217 1252 0.680280 TCCAGCCGTCAGAGAGGTAC 60.680 60.000 0.00 0.00 0.00 3.34
1224 1259 1.475392 CGTCAGAGAGGTACGGGAGAT 60.475 57.143 0.00 0.00 33.13 2.75
1261 1296 1.710013 CTGCGAATCTGTAACCACGT 58.290 50.000 0.00 0.00 0.00 4.49
1336 1371 2.220133 GCACAAGCAAGCAAACATGAAG 59.780 45.455 0.00 0.00 41.58 3.02
1337 1372 2.220133 CACAAGCAAGCAAACATGAAGC 59.780 45.455 0.00 0.00 0.00 3.86
1339 1374 0.670162 AGCAAGCAAACATGAAGCGT 59.330 45.000 0.00 0.00 0.00 5.07
1466 1501 3.766051 GAGGATTGGACCAATTTGCTTCT 59.234 43.478 20.71 3.12 33.90 2.85
1510 1545 4.189188 CCTACCAGTCGGTCCGCG 62.189 72.222 6.34 0.00 44.71 6.46
1589 1624 5.044919 ACATTGGGATGGAGTAAGACATTGA 60.045 40.000 0.00 0.00 37.60 2.57
1618 1653 7.202016 TGATGAATTTACGAGAAATATGGCC 57.798 36.000 0.00 0.00 0.00 5.36
1635 1670 3.253220 TGGCCTCAACTAAGGGACTAAA 58.747 45.455 3.32 0.00 38.49 1.85
1693 1728 3.626930 AGCCTCAGTAGTCCAAGTCTAG 58.373 50.000 0.00 0.00 0.00 2.43
1971 2008 2.610859 GCAGGGTCCAGGGAAGGA 60.611 66.667 0.00 0.00 34.64 3.36
2001 2038 8.276252 ACCACTTTACATGATAAATACACCAC 57.724 34.615 0.00 0.00 0.00 4.16
2079 2117 5.622378 GCTTTTGCTCTACATGTAAGTGTC 58.378 41.667 7.06 0.00 43.35 3.67
2089 2127 6.995686 TCTACATGTAAGTGTCCATTTTGTGT 59.004 34.615 7.06 0.00 33.62 3.72
2098 2136 5.417580 AGTGTCCATTTTGTGTGTTAACTGT 59.582 36.000 7.22 0.00 0.00 3.55
2108 2146 5.968254 TGTGTGTTAACTGTGAAGTACTCA 58.032 37.500 7.22 0.00 0.00 3.41
2185 2223 6.939730 TCAATGTATAGAAGTTTTCAGTGCCA 59.060 34.615 0.00 0.00 0.00 4.92
2400 2448 3.876914 ACAGAGAACTGAATCGTTTTGCA 59.123 39.130 0.00 0.00 46.03 4.08
2668 2716 5.008019 ACATCTTGCACTTACAGTTTCTGTG 59.992 40.000 11.92 0.00 45.01 3.66
3103 3151 7.176589 TGGGAAACATTGTACTTCTGTTTTT 57.823 32.000 16.57 2.77 41.72 1.94
3591 3686 2.291209 ATTGTCAACTGATGGGCACA 57.709 45.000 0.00 0.00 0.00 4.57
3630 3725 7.707624 TGGAGCTTTGTCTAATGATTTTGAT 57.292 32.000 0.00 0.00 0.00 2.57
3777 3875 5.692204 ACGAGAGAAGACAAGTTACATGTTG 59.308 40.000 2.30 0.00 0.00 3.33
3778 3876 5.692204 CGAGAGAAGACAAGTTACATGTTGT 59.308 40.000 2.30 1.24 39.62 3.32
3804 3902 2.203684 CAAGGGCAGGCCTTTGGT 60.204 61.111 25.67 1.73 45.74 3.67
3947 4045 3.198635 TGACAGGGATGAGGAGAATGAAC 59.801 47.826 0.00 0.00 0.00 3.18
4083 4181 4.403113 TGAAATGCATGTGTATGAGGCAAT 59.597 37.500 0.00 0.00 38.08 3.56
4084 4182 4.579454 AATGCATGTGTATGAGGCAATC 57.421 40.909 0.00 0.00 38.08 2.67
4085 4183 3.002038 TGCATGTGTATGAGGCAATCA 57.998 42.857 0.00 0.00 43.70 2.57
4086 4184 2.946990 TGCATGTGTATGAGGCAATCAG 59.053 45.455 0.00 0.00 42.53 2.90
4087 4185 2.292569 GCATGTGTATGAGGCAATCAGG 59.707 50.000 0.00 0.00 42.53 3.86
4088 4186 2.042686 TGTGTATGAGGCAATCAGGC 57.957 50.000 0.00 0.00 42.53 4.85
4152 4250 0.392998 GACAGGACATGTTGCCGGAT 60.393 55.000 5.05 0.00 44.17 4.18
4291 4389 7.563888 TTGAAAGGATCTCATAGAATGCAAG 57.436 36.000 0.00 0.00 0.00 4.01
4382 4480 1.950828 CCACAGGCTGAAGCAGATAG 58.049 55.000 23.66 0.00 44.36 2.08
4830 4931 8.475331 AATATATCTACCGTATTCCTTTTGCG 57.525 34.615 0.00 0.00 0.00 4.85
4898 5002 2.837591 AGTGCCTTCCTTGGTTGTTTTT 59.162 40.909 0.00 0.00 0.00 1.94
4914 5018 7.095017 TGGTTGTTTTTGGAAACTCAAAATCAC 60.095 33.333 11.12 5.94 43.42 3.06
5059 5163 5.957771 TCTTGCCAAAGACCTACAGATAT 57.042 39.130 0.00 0.00 37.51 1.63
5215 5319 2.280628 GCTGCGCTGAAAACTATAGGT 58.719 47.619 19.32 0.00 0.00 3.08
5327 5431 2.078849 TCAGTGCCGTACATTGACAG 57.921 50.000 0.00 0.00 39.84 3.51
5418 5522 6.211384 TCTTCAGAAGTCCAACACATCAGATA 59.789 38.462 10.09 0.00 0.00 1.98
5429 5533 6.183360 CCAACACATCAGATATTTCCTTGCAT 60.183 38.462 0.00 0.00 0.00 3.96
5548 5652 7.546667 TGACGTTCTTTCTAAGTAAGTGTTGTT 59.453 33.333 0.00 0.00 0.00 2.83
5626 5737 9.739276 TTGAGTGTGATTAATATCCTGAAAAGT 57.261 29.630 0.00 0.00 0.00 2.66
6004 6115 0.612744 TTCGGAGGATGTGCATGACA 59.387 50.000 0.00 0.00 39.53 3.58
6072 6183 1.661341 CTGCTAGGAATGTGCTGGTC 58.339 55.000 0.00 0.00 0.00 4.02
6090 6201 7.550906 GTGCTGGTCTCAAATTTATTCTAGACT 59.449 37.037 0.00 0.00 34.48 3.24
6168 6280 6.041409 TCCTTTTGCAGGTTGATGTAATTGAA 59.959 34.615 0.00 0.00 44.37 2.69
6354 6466 1.497991 TTAGCGAATCCATGCTACGC 58.502 50.000 13.72 13.72 42.98 4.42
6413 6525 3.764972 GGTCCGATCCTAGAAGATAAGGG 59.235 52.174 0.00 0.00 33.40 3.95
6494 6614 4.020396 TGGTTTCATTGCATATTGGTGCTT 60.020 37.500 0.00 0.00 45.27 3.91
6512 6632 6.317140 TGGTGCTTTCTATTATCTGAAGCTTG 59.683 38.462 2.10 0.00 0.00 4.01
6644 6821 5.531287 CCTTGCCTAGTTACATGGAAATACC 59.469 44.000 0.00 0.00 33.96 2.73
6784 6961 6.924913 TCCTTCTTGGATATAGGATCAGTG 57.075 41.667 0.00 0.00 40.56 3.66
6857 7034 1.067142 TCGAGCAATACGAAACAGGCT 60.067 47.619 0.00 0.00 36.84 4.58
6933 7110 3.074412 CGGCCTTCTGTGAACAAATAGT 58.926 45.455 0.00 0.00 0.00 2.12
7032 7214 8.402472 TGTAGCATAAACTTACATACATTTGGC 58.598 33.333 0.00 0.00 0.00 4.52
7074 7256 5.296813 AGAAATCAAATTCGCTGTACACC 57.703 39.130 0.00 0.00 34.46 4.16
7098 7280 3.018149 CCTAAGGAGTAGTCGACTTGCT 58.982 50.000 25.44 21.18 39.06 3.91
7143 7325 4.089361 TGAGGCAGTTTCTGATGAGACTA 58.911 43.478 0.66 0.00 35.76 2.59
7149 7331 6.128418 GGCAGTTTCTGATGAGACTAAACTTC 60.128 42.308 0.66 0.00 35.76 3.01
7187 7369 5.433381 AGGTAAGCTCTTCCAATTAGGGATT 59.567 40.000 0.00 0.00 36.67 3.01
7188 7370 6.619852 AGGTAAGCTCTTCCAATTAGGGATTA 59.380 38.462 0.00 0.00 36.67 1.75
7194 7376 8.728098 AGCTCTTCCAATTAGGGATTAGTTAAT 58.272 33.333 0.00 0.00 36.67 1.40
7390 7572 0.823356 ACTGACAATGGCGCAAACCT 60.823 50.000 10.83 0.00 0.00 3.50
7485 7667 4.215613 GGGAAGTAAACACTTGGTGATGTC 59.784 45.833 4.62 0.00 36.96 3.06
7492 7674 3.884895 ACACTTGGTGATGTCTGTTTGA 58.115 40.909 4.62 0.00 36.96 2.69
7596 7778 2.808543 GGCCTTAGATGAAATGGTAGCG 59.191 50.000 0.00 0.00 0.00 4.26
7597 7779 3.494398 GGCCTTAGATGAAATGGTAGCGA 60.494 47.826 0.00 0.00 0.00 4.93
7677 7868 7.494625 AGGATGAATGCAACATTGAAATGAATC 59.505 33.333 9.94 0.00 39.67 2.52
7702 7893 6.985117 CCAAAGAATATGGGGATGTACAATG 58.015 40.000 0.00 0.00 34.15 2.82
7733 7927 2.628657 ACGTGCTTCTTCTACAACCTCT 59.371 45.455 0.00 0.00 0.00 3.69
7735 7929 3.330267 GTGCTTCTTCTACAACCTCTGG 58.670 50.000 0.00 0.00 0.00 3.86
7747 7941 6.897966 TCTACAACCTCTGGAATGTTCTAGAT 59.102 38.462 8.92 0.00 42.71 1.98
7774 7968 7.306399 GCTTCTATATGCATGAACATTTGTTGC 60.306 37.037 10.16 0.00 38.56 4.17
7785 7979 0.975887 ATTTGTTGCCCTGGCGATTT 59.024 45.000 0.49 0.00 45.51 2.17
7788 7982 1.976474 GTTGCCCTGGCGATTTGGA 60.976 57.895 0.49 0.00 45.51 3.53
7952 8146 1.154016 CGGCGATGAGTGTCTCGTT 60.154 57.895 0.00 0.00 37.23 3.85
8027 8221 0.905337 AGGCGGTAGAGTTCTGGCTT 60.905 55.000 0.00 0.00 42.97 4.35
8042 8236 3.672293 CTTGTCCACGGCAAGCAT 58.328 55.556 7.13 0.00 37.18 3.79
8260 8461 6.387465 TCAGAGCGTGTAATGTATAATAGCC 58.613 40.000 0.00 0.00 0.00 3.93
8300 8511 0.308376 GATCTACTCGGTCGACCAGC 59.692 60.000 32.80 12.52 35.14 4.85
8558 8769 2.513897 CGACGGCCTTTGGGATCC 60.514 66.667 1.92 1.92 33.58 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 269 2.679716 CAGCAAGGGGGAAGGAGG 59.320 66.667 0.00 0.00 0.00 4.30
275 300 0.109458 TACGAAGCGCATGACGTCTT 60.109 50.000 17.92 7.74 46.11 3.01
285 310 0.787787 TCAACACACATACGAAGCGC 59.212 50.000 0.00 0.00 0.00 5.92
309 335 1.006102 CCGAACGAACAGCACCTCT 60.006 57.895 0.00 0.00 0.00 3.69
320 346 1.135603 CGATGACCAAGTACCGAACGA 60.136 52.381 0.00 0.00 0.00 3.85
328 354 3.262151 TCCAAATCACCGATGACCAAGTA 59.738 43.478 0.00 0.00 37.79 2.24
358 385 3.893521 TGGTGATGATGGAGTCGTACTA 58.106 45.455 0.00 0.00 0.00 1.82
525 553 6.476243 ACACACAGTCCGATAATGTTAAAC 57.524 37.500 0.00 0.00 0.00 2.01
541 569 1.273606 AGATCCACCGAAGACACACAG 59.726 52.381 0.00 0.00 0.00 3.66
548 576 2.525368 TCTCACAAGATCCACCGAAGA 58.475 47.619 0.00 0.00 0.00 2.87
551 579 2.831526 TGAATCTCACAAGATCCACCGA 59.168 45.455 0.00 0.00 41.54 4.69
554 582 4.999950 ACAACTGAATCTCACAAGATCCAC 59.000 41.667 0.00 0.00 41.54 4.02
560 588 6.690098 CACTGAAAACAACTGAATCTCACAAG 59.310 38.462 0.00 0.00 0.00 3.16
565 593 5.757850 ACCACTGAAAACAACTGAATCTC 57.242 39.130 0.00 0.00 0.00 2.75
571 599 4.244862 AGCAAAACCACTGAAAACAACTG 58.755 39.130 0.00 0.00 0.00 3.16
572 600 4.535526 AGCAAAACCACTGAAAACAACT 57.464 36.364 0.00 0.00 0.00 3.16
573 601 4.688413 TCAAGCAAAACCACTGAAAACAAC 59.312 37.500 0.00 0.00 0.00 3.32
578 606 4.358851 CGAATCAAGCAAAACCACTGAAA 58.641 39.130 0.00 0.00 0.00 2.69
582 610 2.306847 ACCGAATCAAGCAAAACCACT 58.693 42.857 0.00 0.00 0.00 4.00
583 611 2.793278 ACCGAATCAAGCAAAACCAC 57.207 45.000 0.00 0.00 0.00 4.16
587 615 4.035278 ACGAAAACCGAATCAAGCAAAA 57.965 36.364 0.00 0.00 41.76 2.44
596 624 2.723618 CGCGAATGAACGAAAACCGAAT 60.724 45.455 0.00 0.00 41.76 3.34
597 625 1.397441 CGCGAATGAACGAAAACCGAA 60.397 47.619 0.00 0.00 41.76 4.30
606 634 1.056750 GAACGGACGCGAATGAACG 59.943 57.895 15.93 10.11 0.00 3.95
609 637 0.172578 AGATGAACGGACGCGAATGA 59.827 50.000 15.93 0.00 0.00 2.57
614 642 0.866061 CCAGTAGATGAACGGACGCG 60.866 60.000 3.53 3.53 0.00 6.01
617 645 3.587797 TCAACCAGTAGATGAACGGAC 57.412 47.619 0.00 0.00 0.00 4.79
662 690 6.019961 ACACATAAAAACAGCAATCGTTGTTG 60.020 34.615 11.08 11.08 44.73 3.33
664 692 5.587289 ACACATAAAAACAGCAATCGTTGT 58.413 33.333 0.00 0.00 38.35 3.32
682 710 1.295423 CCCCGAAGAACCGACACAT 59.705 57.895 0.00 0.00 0.00 3.21
685 713 1.186917 TAAGCCCCGAAGAACCGACA 61.187 55.000 0.00 0.00 0.00 4.35
688 716 1.449070 GGTAAGCCCCGAAGAACCG 60.449 63.158 0.00 0.00 0.00 4.44
697 725 2.808906 AAGTCTTCATGGTAAGCCCC 57.191 50.000 0.00 0.00 0.00 5.80
700 728 4.092091 CAGTCGAAAGTCTTCATGGTAAGC 59.908 45.833 0.00 0.00 0.00 3.09
708 736 5.761726 TGTAGTAGACAGTCGAAAGTCTTCA 59.238 40.000 21.59 14.37 42.12 3.02
717 745 7.310664 CAAACCTTATTGTAGTAGACAGTCGA 58.689 38.462 0.00 0.00 39.88 4.20
728 757 3.356290 AGCTGGGCAAACCTTATTGTAG 58.644 45.455 0.00 0.00 41.11 2.74
734 763 1.243902 CGAAAGCTGGGCAAACCTTA 58.756 50.000 0.00 0.00 41.11 2.69
764 793 2.289072 ACTTGCTGACGACTACAAGCAT 60.289 45.455 15.81 1.25 42.55 3.79
781 810 6.992063 AATTACACCTTCATAGAGCACTTG 57.008 37.500 0.00 0.00 0.00 3.16
783 812 6.951971 AGAAATTACACCTTCATAGAGCACT 58.048 36.000 0.00 0.00 0.00 4.40
815 844 7.750229 AATGTCATGACAGTACAAAGAACAT 57.250 32.000 30.63 9.09 45.48 2.71
929 959 3.202706 GGACGGCGGAATTCAGGC 61.203 66.667 19.88 19.88 0.00 4.85
959 989 2.049063 GCGACGCAGAGTGGAGTT 60.049 61.111 16.42 0.00 0.00 3.01
960 990 2.983930 GAGCGACGCAGAGTGGAGT 61.984 63.158 23.70 0.00 0.00 3.85
961 991 2.202544 GAGCGACGCAGAGTGGAG 60.203 66.667 23.70 0.00 0.00 3.86
962 992 2.673341 AGAGCGACGCAGAGTGGA 60.673 61.111 23.70 0.00 0.00 4.02
963 993 2.202544 GAGAGCGACGCAGAGTGG 60.203 66.667 23.70 0.00 0.00 4.00
965 995 1.974343 AAGGAGAGCGACGCAGAGT 60.974 57.895 23.70 0.00 0.00 3.24
966 996 1.515952 CAAGGAGAGCGACGCAGAG 60.516 63.158 23.70 0.33 0.00 3.35
967 997 2.568612 CAAGGAGAGCGACGCAGA 59.431 61.111 23.70 0.00 0.00 4.26
970 1002 4.742201 TGGCAAGGAGAGCGACGC 62.742 66.667 13.03 13.03 0.00 5.19
984 1016 2.110006 GCGAGGGGAGAGAATGGC 59.890 66.667 0.00 0.00 0.00 4.40
1000 1033 0.032267 CTAGGGTTTCGGGAGATCGC 59.968 60.000 0.00 0.00 39.57 4.58
1001 1034 0.674534 CCTAGGGTTTCGGGAGATCG 59.325 60.000 0.00 0.00 39.57 3.69
1002 1035 1.964933 CTCCTAGGGTTTCGGGAGATC 59.035 57.143 9.46 0.00 45.79 2.75
1003 1036 1.574339 TCTCCTAGGGTTTCGGGAGAT 59.426 52.381 9.46 0.00 46.24 2.75
1004 1037 3.609798 CTCCTAGGGTTTCGGGAGA 57.390 57.895 9.46 0.00 45.79 3.71
1005 1038 1.481363 GTTCTCCTAGGGTTTCGGGAG 59.519 57.143 9.46 0.00 44.69 4.30
1006 1039 1.565067 GTTCTCCTAGGGTTTCGGGA 58.435 55.000 9.46 0.00 0.00 5.14
1007 1040 0.540454 GGTTCTCCTAGGGTTTCGGG 59.460 60.000 9.46 0.00 0.00 5.14
1224 1259 1.077357 GCAGAGGAGAGGTCTCGGA 60.077 63.158 0.90 0.00 43.76 4.55
1261 1296 1.000274 CACAGATCACAGACACCACGA 60.000 52.381 0.00 0.00 0.00 4.35
1336 1371 1.235281 GGAAACAAGTCCCCTGACGC 61.235 60.000 0.00 0.00 46.51 5.19
1337 1372 2.928416 GGAAACAAGTCCCCTGACG 58.072 57.895 0.00 0.00 46.51 4.35
1564 1599 4.487714 TGTCTTACTCCATCCCAATGTC 57.512 45.455 0.00 0.00 0.00 3.06
1654 1689 8.204836 ACTGAGGCTACATTTCTACGAAATATT 58.795 33.333 1.89 0.00 0.00 1.28
1693 1728 7.417612 TGTGAAACATTTGAAGCTCTTAAGTC 58.582 34.615 1.63 0.00 45.67 3.01
1911 1946 2.741517 CGGGCTGCCCTTTTTAAAAATG 59.258 45.455 33.39 11.06 42.67 2.32
1917 1952 1.605165 CACCGGGCTGCCCTTTTTA 60.605 57.895 33.39 0.00 42.67 1.52
1971 2008 8.208224 TGTATTTATCATGTAAAGTGGTCGGAT 58.792 33.333 0.00 0.00 0.00 4.18
2001 2038 8.511321 TCAGGTACAATTGTTAAGCAGTATTTG 58.489 33.333 17.78 3.09 0.00 2.32
2004 2042 8.630054 TTTCAGGTACAATTGTTAAGCAGTAT 57.370 30.769 17.78 0.00 0.00 2.12
2079 2117 6.329496 ACTTCACAGTTAACACACAAAATGG 58.671 36.000 8.61 0.00 0.00 3.16
2089 2127 7.231925 TCCAGTATGAGTACTTCACAGTTAACA 59.768 37.037 8.61 0.00 39.12 2.41
2098 2136 8.589701 TTCTTGTATCCAGTATGAGTACTTCA 57.410 34.615 0.00 0.00 39.12 3.02
2108 2146 7.598759 AGGTACGATTTCTTGTATCCAGTAT 57.401 36.000 0.00 0.00 0.00 2.12
2185 2223 7.385267 TGCACCAAAATGATTGCTAATACTTT 58.615 30.769 0.00 0.00 35.91 2.66
2400 2448 1.740585 CTCAGATCACGAGACTCGGTT 59.259 52.381 27.39 12.35 45.59 4.44
2776 2824 6.651643 ACGCACGCCAAAGGAATATAATATTA 59.348 34.615 0.00 0.00 0.00 0.98
3030 3078 6.428465 TGTCAGTTATATTTCTTCAAACGCCA 59.572 34.615 0.00 0.00 0.00 5.69
3069 3117 3.134442 ACAATGTTTCCCATGCAAACACT 59.866 39.130 18.38 9.16 44.46 3.55
3103 3151 3.694043 TGCAGTGAAGTAGTGGCAATA 57.306 42.857 0.00 0.00 0.00 1.90
3356 3404 3.701205 TCAGAAGCAGCAACTGGATAA 57.299 42.857 15.58 0.00 33.19 1.75
3426 3474 6.092122 TGTGCTCCTATAGTTGAAATTTCACG 59.908 38.462 20.35 5.36 36.83 4.35
3591 3686 2.631545 AGCTCCAAGCAAGCAAATTCTT 59.368 40.909 1.29 0.00 45.56 2.52
3630 3725 9.015367 GCTATAGACTGTTGGACATAGAGATAA 57.985 37.037 3.21 0.00 0.00 1.75
3640 3735 4.737855 TTCCTGCTATAGACTGTTGGAC 57.262 45.455 3.21 0.00 0.00 4.02
3777 3875 4.470602 AGGCCTGCCCTTGTAAATATTAC 58.529 43.478 3.11 0.00 43.06 1.89
3778 3876 4.806952 AGGCCTGCCCTTGTAAATATTA 57.193 40.909 3.11 0.00 43.06 0.98
3804 3902 1.774254 TCAAGCTCCTCTGGGTTTTGA 59.226 47.619 0.00 0.00 0.00 2.69
3947 4045 1.364626 GCAACATCAGACTGAGCCGG 61.365 60.000 11.52 0.00 0.00 6.13
4083 4181 3.756082 AGGGGAACATTTATTGCCTGA 57.244 42.857 0.00 0.00 39.87 3.86
4084 4182 3.319122 GCTAGGGGAACATTTATTGCCTG 59.681 47.826 0.00 0.00 39.87 4.85
4085 4183 3.205282 AGCTAGGGGAACATTTATTGCCT 59.795 43.478 0.00 0.00 39.87 4.75
4086 4184 3.566351 AGCTAGGGGAACATTTATTGCC 58.434 45.455 0.00 0.00 39.27 4.52
4087 4185 6.901081 ATTAGCTAGGGGAACATTTATTGC 57.099 37.500 0.00 0.00 0.00 3.56
4382 4480 3.075866 GCTTAAGCATGGCATCAACTC 57.924 47.619 22.59 0.00 41.59 3.01
4814 4915 1.886886 ACACGCAAAAGGAATACGGT 58.113 45.000 0.00 0.00 0.00 4.83
4826 4927 2.480587 CCACGGAGATACATACACGCAA 60.481 50.000 0.00 0.00 0.00 4.85
4828 4929 1.066605 ACCACGGAGATACATACACGC 59.933 52.381 0.00 0.00 0.00 5.34
4829 4930 3.113322 CAACCACGGAGATACATACACG 58.887 50.000 0.00 0.00 0.00 4.49
4830 4931 2.864343 GCAACCACGGAGATACATACAC 59.136 50.000 0.00 0.00 0.00 2.90
4914 5018 6.033341 TCAAGAAAACACTGGTTCAAAATCG 58.967 36.000 0.00 0.00 35.82 3.34
5327 5431 5.625311 CCTACGAAAGACAAACAAAATCAGC 59.375 40.000 0.00 0.00 0.00 4.26
5429 5533 1.944177 ACTCTGAGCTAGCCTTTCCA 58.056 50.000 12.13 1.30 0.00 3.53
5626 5737 7.715249 AGTTGAGTTTAGCAAGTCTTGATGTAA 59.285 33.333 16.99 6.46 33.89 2.41
6004 6115 7.843490 TGTAGCTTCTCGTTATTAAGCAAAT 57.157 32.000 8.78 0.00 46.35 2.32
6168 6280 6.299141 AGTTTGTAAGACATTCCACTGTGAT 58.701 36.000 9.86 0.00 0.00 3.06
6354 6466 7.912056 TCTACTCAAAAGAAGATGAACATGG 57.088 36.000 0.00 0.00 0.00 3.66
6390 6502 4.408276 CCTTATCTTCTAGGATCGGACCA 58.592 47.826 0.00 0.00 33.13 4.02
6413 6525 7.498900 TGGTATGAACACAGATCCATAATGTTC 59.501 37.037 13.87 13.87 46.02 3.18
6512 6632 8.755696 TGCAAAACCAAAACATTCATCTATAC 57.244 30.769 0.00 0.00 0.00 1.47
6521 6641 4.071423 GGGCTATGCAAAACCAAAACATT 58.929 39.130 0.00 0.00 0.00 2.71
7032 7214 6.968131 TTCTTGTTGAACTCCTGAATATCG 57.032 37.500 0.00 0.00 0.00 2.92
7074 7256 4.498345 GCAAGTCGACTACTCCTTAGGATG 60.498 50.000 20.39 9.71 37.50 3.51
7098 7280 1.722034 AAGGTGCTCTCTGACTTCCA 58.278 50.000 0.00 0.00 0.00 3.53
7143 7325 8.575649 TTACCTCAAAGAAAGAGTTGAAGTTT 57.424 30.769 0.00 0.00 33.52 2.66
7149 7331 5.994668 AGAGCTTACCTCAAAGAAAGAGTTG 59.005 40.000 0.00 0.00 43.31 3.16
7194 7376 9.725019 CAAGGGCAATACAATGTCTATAGATAA 57.275 33.333 5.57 0.00 0.00 1.75
7199 7381 8.029782 AGTACAAGGGCAATACAATGTCTATA 57.970 34.615 0.00 0.00 0.00 1.31
7206 7388 9.640952 ATGTATTAAGTACAAGGGCAATACAAT 57.359 29.630 8.52 0.00 45.87 2.71
7207 7389 9.469097 AATGTATTAAGTACAAGGGCAATACAA 57.531 29.630 8.52 0.00 45.87 2.41
7208 7390 9.469097 AAATGTATTAAGTACAAGGGCAATACA 57.531 29.630 7.25 7.25 45.87 2.29
7246 7428 0.108615 CACCCCTCGCAGTTGTCTAG 60.109 60.000 0.00 0.00 0.00 2.43
7390 7572 0.764890 CCTCCCCTTCTTGTGTGACA 59.235 55.000 0.00 0.00 0.00 3.58
7485 7667 5.741425 CACATCACAACACTAGTCAAACAG 58.259 41.667 0.00 0.00 0.00 3.16
7492 7674 2.135139 CGTGCACATCACAACACTAGT 58.865 47.619 18.64 0.00 45.92 2.57
7596 7778 2.067013 GCTGAAGTACTGAACGGGTTC 58.933 52.381 0.00 4.63 39.91 3.62
7597 7779 1.414919 TGCTGAAGTACTGAACGGGTT 59.585 47.619 0.00 0.00 0.00 4.11
7695 7886 3.374745 CACGTCGGTATACCCATTGTAC 58.625 50.000 16.47 4.59 30.62 2.90
7702 7893 0.743097 AGAAGCACGTCGGTATACCC 59.257 55.000 16.47 2.20 0.00 3.69
7733 7927 7.821359 GCATATAGAAGCATCTAGAACATTCCA 59.179 37.037 4.80 0.00 41.36 3.53
7735 7929 8.768957 TGCATATAGAAGCATCTAGAACATTC 57.231 34.615 4.80 1.36 41.36 2.67
7747 7941 7.337480 ACAAATGTTCATGCATATAGAAGCA 57.663 32.000 0.00 1.54 45.92 3.91
7774 7968 2.824041 CCGTCCAAATCGCCAGGG 60.824 66.667 0.00 0.00 0.00 4.45
7795 7989 0.815734 AACTCGTACCGATGACCCTG 59.184 55.000 0.00 0.00 34.61 4.45
7796 7990 0.815734 CAACTCGTACCGATGACCCT 59.184 55.000 0.00 0.00 34.61 4.34
8240 8434 7.795482 TTTTGGCTATTATACATTACACGCT 57.205 32.000 0.00 0.00 0.00 5.07
8278 8483 2.801679 CTGGTCGACCGAGTAGATCTAC 59.198 54.545 28.70 22.97 39.43 2.59
8296 8507 2.034879 AACGCAAGGTGATCGCTGG 61.035 57.895 6.18 0.00 46.39 4.85
8550 8761 2.366435 GAGACCCCGGGATCCCAA 60.366 66.667 30.42 0.00 35.37 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.