Multiple sequence alignment - TraesCS1B01G121900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G121900 chr1B 100.000 2351 0 0 1 2351 145446338 145443988 0.000000e+00 4342.0
1 TraesCS1B01G121900 chr1B 94.444 54 0 3 2300 2351 410525162 410525110 1.940000e-11 80.5
2 TraesCS1B01G121900 chr1B 100.000 42 0 0 2310 2351 75663155 75663196 6.970000e-11 78.7
3 TraesCS1B01G121900 chr7A 96.089 1713 64 2 1 1710 717769112 717767400 0.000000e+00 2789.0
4 TraesCS1B01G121900 chr7A 88.843 1685 171 13 27 1706 721643425 721641753 0.000000e+00 2054.0
5 TraesCS1B01G121900 chr5A 93.263 1707 105 8 3 1707 31278708 31280406 0.000000e+00 2507.0
6 TraesCS1B01G121900 chr5A 87.069 232 24 3 1932 2157 596485698 596485467 8.340000e-65 257.0
7 TraesCS1B01G121900 chr5A 80.597 268 36 4 1932 2185 217101442 217101177 2.380000e-45 193.0
8 TraesCS1B01G121900 chr5A 89.344 122 13 0 2194 2315 596485468 596485347 1.130000e-33 154.0
9 TraesCS1B01G121900 chr6D 91.404 1710 127 15 3 1704 367879790 367878093 0.000000e+00 2326.0
10 TraesCS1B01G121900 chr5D 91.015 1714 130 20 3 1706 564670367 564672066 0.000000e+00 2290.0
11 TraesCS1B01G121900 chr5D 93.264 386 21 2 1928 2312 459106686 459107067 4.390000e-157 564.0
12 TraesCS1B01G121900 chr5D 88.406 69 7 1 1869 1937 24188252 24188319 5.390000e-12 82.4
13 TraesCS1B01G121900 chr5D 90.476 63 5 1 1875 1937 136462646 136462585 5.390000e-12 82.4
14 TraesCS1B01G121900 chr6A 89.578 1708 155 16 3 1704 183314309 183312619 0.000000e+00 2146.0
15 TraesCS1B01G121900 chr6A 89.350 1709 165 15 3 1706 183929685 183931381 0.000000e+00 2132.0
16 TraesCS1B01G121900 chr6A 95.696 1185 40 2 521 1705 22262078 22263251 0.000000e+00 1895.0
17 TraesCS1B01G121900 chr2B 81.679 1632 256 39 90 1705 748211381 748212985 0.000000e+00 1317.0
18 TraesCS1B01G121900 chr2B 95.652 69 2 1 1869 1937 659072061 659071994 2.470000e-20 110.0
19 TraesCS1B01G121900 chr3A 96.321 299 10 1 1408 1705 621497550 621497848 7.550000e-135 490.0
20 TraesCS1B01G121900 chrUn 87.632 380 40 2 1933 2312 2241517 2241889 3.590000e-118 435.0
21 TraesCS1B01G121900 chrUn 87.206 383 42 2 1933 2315 317657978 317657603 1.670000e-116 429.0
22 TraesCS1B01G121900 chrUn 89.130 276 23 2 2040 2315 269778400 269778132 1.040000e-88 337.0
23 TraesCS1B01G121900 chrUn 89.130 276 23 2 2040 2315 269786773 269786505 1.040000e-88 337.0
24 TraesCS1B01G121900 chr1A 93.388 121 7 1 1722 1841 86642844 86642724 6.680000e-41 178.0
25 TraesCS1B01G121900 chr1A 89.855 69 6 1 1869 1937 545053169 545053236 1.160000e-13 87.9
26 TraesCS1B01G121900 chr1A 88.571 70 5 3 1869 1937 586311962 586311895 5.390000e-12 82.4
27 TraesCS1B01G121900 chr7D 95.714 70 2 1 1869 1938 186430478 186430546 6.870000e-21 111.0
28 TraesCS1B01G121900 chr2A 92.754 69 4 1 1869 1937 31883637 31883704 5.350000e-17 99.0
29 TraesCS1B01G121900 chr2D 89.855 69 6 1 1869 1937 579198267 579198334 1.160000e-13 87.9
30 TraesCS1B01G121900 chr2D 88.571 70 5 3 1869 1937 453758389 453758322 5.390000e-12 82.4
31 TraesCS1B01G121900 chr3B 100.000 42 0 0 2310 2351 130591003 130590962 6.970000e-11 78.7
32 TraesCS1B01G121900 chr3D 97.727 44 1 0 2308 2351 296502176 296502219 2.510000e-10 76.8
33 TraesCS1B01G121900 chr5B 97.674 43 1 0 2309 2351 192840829 192840787 9.010000e-10 75.0
34 TraesCS1B01G121900 chr5B 97.674 43 1 0 2309 2351 192850296 192850254 9.010000e-10 75.0
35 TraesCS1B01G121900 chr5B 97.674 43 1 0 2309 2351 223710268 223710310 9.010000e-10 75.0
36 TraesCS1B01G121900 chr4B 100.000 40 0 0 2312 2351 98785947 98785908 9.010000e-10 75.0
37 TraesCS1B01G121900 chr4B 97.674 43 1 0 2309 2351 447482387 447482345 9.010000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G121900 chr1B 145443988 145446338 2350 True 4342 4342 100.000 1 2351 1 chr1B.!!$R1 2350
1 TraesCS1B01G121900 chr7A 717767400 717769112 1712 True 2789 2789 96.089 1 1710 1 chr7A.!!$R1 1709
2 TraesCS1B01G121900 chr7A 721641753 721643425 1672 True 2054 2054 88.843 27 1706 1 chr7A.!!$R2 1679
3 TraesCS1B01G121900 chr5A 31278708 31280406 1698 False 2507 2507 93.263 3 1707 1 chr5A.!!$F1 1704
4 TraesCS1B01G121900 chr6D 367878093 367879790 1697 True 2326 2326 91.404 3 1704 1 chr6D.!!$R1 1701
5 TraesCS1B01G121900 chr5D 564670367 564672066 1699 False 2290 2290 91.015 3 1706 1 chr5D.!!$F3 1703
6 TraesCS1B01G121900 chr6A 183312619 183314309 1690 True 2146 2146 89.578 3 1704 1 chr6A.!!$R1 1701
7 TraesCS1B01G121900 chr6A 183929685 183931381 1696 False 2132 2132 89.350 3 1706 1 chr6A.!!$F2 1703
8 TraesCS1B01G121900 chr6A 22262078 22263251 1173 False 1895 1895 95.696 521 1705 1 chr6A.!!$F1 1184
9 TraesCS1B01G121900 chr2B 748211381 748212985 1604 False 1317 1317 81.679 90 1705 1 chr2B.!!$F1 1615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 547 0.754472 TCGACGGTGAAACTCCCTTT 59.246 50.0 0.0 0.0 36.74 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1453 0.035439 CCACACACCCCACCAGATAC 60.035 60.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
349 350 3.116091 CTGGAAACACAGCAAGGGT 57.884 52.632 0.00 0.00 35.60 4.34
438 439 3.537337 TGGAGACTCCCCTATTTGGAAA 58.463 45.455 19.11 0.00 35.03 3.13
483 484 1.078426 CCTGGCGGGTAGAAAGGTG 60.078 63.158 3.48 0.00 0.00 4.00
487 488 0.835276 GGCGGGTAGAAAGGTGGTAT 59.165 55.000 0.00 0.00 0.00 2.73
507 508 5.163550 GGTATTGAAATCTGGTAACTTGGCC 60.164 44.000 0.00 0.00 37.61 5.36
546 547 0.754472 TCGACGGTGAAACTCCCTTT 59.246 50.000 0.00 0.00 36.74 3.11
921 926 0.908910 TGAGGAGGCGAAATTGGCTA 59.091 50.000 0.00 0.00 45.90 3.93
961 966 4.455877 CCTTTTGTGATAACAGGGAGACAC 59.544 45.833 0.00 0.00 0.00 3.67
1072 1078 4.943093 ACATTTGGCAATATTTTTCCTGGC 59.057 37.500 0.00 0.00 35.08 4.85
1084 1090 1.414158 TTCCTGGCGCTATAGCTTCT 58.586 50.000 21.98 0.00 39.32 2.85
1152 1158 4.500396 GCAATGTGGAATTGCCGG 57.500 55.556 11.14 0.00 46.21 6.13
1185 1191 4.202111 ACGTTTGAATTCAAGAAGTTGGGG 60.202 41.667 19.64 6.49 37.15 4.96
1221 1227 5.567534 CGTGATTTATGTTGCTTGTGGTTAC 59.432 40.000 0.00 0.00 0.00 2.50
1260 1266 1.005630 GATGAGGGGCGAAGATCGG 60.006 63.158 1.64 0.00 40.84 4.18
1376 1383 0.179065 CGGATGGCAGAAGAGATGCA 60.179 55.000 0.00 0.00 45.68 3.96
1378 1385 1.134159 GGATGGCAGAAGAGATGCACT 60.134 52.381 0.00 0.00 45.68 4.40
1424 1434 2.893637 CGGTTCATCTGTCTCGGATTT 58.106 47.619 0.00 0.00 0.00 2.17
1425 1435 3.737047 GCGGTTCATCTGTCTCGGATTTA 60.737 47.826 0.00 0.00 0.00 1.40
1427 1437 4.120589 GGTTCATCTGTCTCGGATTTACC 58.879 47.826 0.00 0.00 0.00 2.85
1452 1464 0.546598 GGTTCCTGGTATCTGGTGGG 59.453 60.000 0.00 0.00 34.13 4.61
1526 1542 7.249186 TGTTTTTATGTGCGTGTAGTAGTTT 57.751 32.000 0.00 0.00 0.00 2.66
1729 1747 8.870075 AAAGAAAAGACTATCTAAAGGCATGT 57.130 30.769 0.00 0.00 0.00 3.21
1730 1748 8.499403 AAGAAAAGACTATCTAAAGGCATGTC 57.501 34.615 0.00 0.00 0.00 3.06
1731 1749 7.856415 AGAAAAGACTATCTAAAGGCATGTCT 58.144 34.615 0.00 0.00 35.20 3.41
1732 1750 8.325046 AGAAAAGACTATCTAAAGGCATGTCTT 58.675 33.333 6.77 6.77 42.65 3.01
1733 1751 8.499403 AAAAGACTATCTAAAGGCATGTCTTC 57.501 34.615 14.03 0.00 40.81 2.87
1734 1752 6.798427 AGACTATCTAAAGGCATGTCTTCA 57.202 37.500 14.03 0.00 30.33 3.02
1735 1753 7.187824 AGACTATCTAAAGGCATGTCTTCAA 57.812 36.000 14.03 3.95 30.33 2.69
1736 1754 7.271511 AGACTATCTAAAGGCATGTCTTCAAG 58.728 38.462 14.03 13.75 30.33 3.02
1737 1755 5.819901 ACTATCTAAAGGCATGTCTTCAAGC 59.180 40.000 14.03 0.00 37.52 4.01
1738 1756 4.292186 TCTAAAGGCATGTCTTCAAGCT 57.708 40.909 14.03 0.00 38.20 3.74
1739 1757 4.005650 TCTAAAGGCATGTCTTCAAGCTG 58.994 43.478 14.03 0.85 38.20 4.24
1740 1758 0.886563 AAGGCATGTCTTCAAGCTGC 59.113 50.000 6.77 0.00 38.20 5.25
1741 1759 0.037877 AGGCATGTCTTCAAGCTGCT 59.962 50.000 0.00 0.00 38.20 4.24
1742 1760 0.170561 GGCATGTCTTCAAGCTGCTG 59.829 55.000 1.35 0.00 38.20 4.41
1743 1761 0.456312 GCATGTCTTCAAGCTGCTGC 60.456 55.000 1.35 7.62 35.70 5.25
1744 1762 0.170561 CATGTCTTCAAGCTGCTGCC 59.829 55.000 12.44 0.00 40.80 4.85
1745 1763 0.964358 ATGTCTTCAAGCTGCTGCCC 60.964 55.000 12.44 0.00 40.80 5.36
1746 1764 2.034687 TCTTCAAGCTGCTGCCCC 59.965 61.111 12.44 0.00 40.80 5.80
1747 1765 2.282674 CTTCAAGCTGCTGCCCCA 60.283 61.111 12.44 0.00 40.80 4.96
1748 1766 1.681327 CTTCAAGCTGCTGCCCCAT 60.681 57.895 12.44 0.00 40.80 4.00
1749 1767 0.394762 CTTCAAGCTGCTGCCCCATA 60.395 55.000 12.44 0.00 40.80 2.74
1750 1768 0.259647 TTCAAGCTGCTGCCCCATAT 59.740 50.000 12.44 0.00 40.80 1.78
1751 1769 1.139439 TCAAGCTGCTGCCCCATATA 58.861 50.000 12.44 0.00 40.80 0.86
1752 1770 1.706866 TCAAGCTGCTGCCCCATATAT 59.293 47.619 12.44 0.00 40.80 0.86
1753 1771 2.912295 TCAAGCTGCTGCCCCATATATA 59.088 45.455 12.44 0.00 40.80 0.86
1754 1772 3.524789 TCAAGCTGCTGCCCCATATATAT 59.475 43.478 12.44 0.00 40.80 0.86
1755 1773 3.853355 AGCTGCTGCCCCATATATATC 57.147 47.619 12.44 0.00 40.80 1.63
1756 1774 2.103771 AGCTGCTGCCCCATATATATCG 59.896 50.000 12.44 0.00 40.80 2.92
1757 1775 2.487934 CTGCTGCCCCATATATATCGC 58.512 52.381 0.00 0.00 0.00 4.58
1758 1776 1.836802 TGCTGCCCCATATATATCGCA 59.163 47.619 0.00 7.90 0.00 5.10
1759 1777 2.439135 TGCTGCCCCATATATATCGCAT 59.561 45.455 0.00 0.00 0.00 4.73
1760 1778 2.810274 GCTGCCCCATATATATCGCATG 59.190 50.000 8.41 0.00 0.00 4.06
1761 1779 3.745480 GCTGCCCCATATATATCGCATGT 60.745 47.826 8.41 0.00 0.00 3.21
1762 1780 4.503123 GCTGCCCCATATATATCGCATGTA 60.503 45.833 8.41 0.00 0.00 2.29
1763 1781 5.213891 TGCCCCATATATATCGCATGTAG 57.786 43.478 0.00 0.00 0.00 2.74
1764 1782 4.898861 TGCCCCATATATATCGCATGTAGA 59.101 41.667 0.00 0.00 0.00 2.59
1765 1783 5.221441 TGCCCCATATATATCGCATGTAGAC 60.221 44.000 0.00 0.00 0.00 2.59
1766 1784 5.011125 GCCCCATATATATCGCATGTAGACT 59.989 44.000 0.00 0.00 0.00 3.24
1767 1785 6.682746 CCCCATATATATCGCATGTAGACTC 58.317 44.000 0.00 0.00 0.00 3.36
1768 1786 6.374578 CCCATATATATCGCATGTAGACTCG 58.625 44.000 0.00 0.00 0.00 4.18
1769 1787 5.853810 CCATATATATCGCATGTAGACTCGC 59.146 44.000 0.00 0.00 0.00 5.03
1770 1788 4.965119 ATATATCGCATGTAGACTCGCA 57.035 40.909 0.00 0.00 0.00 5.10
1771 1789 3.857549 ATATCGCATGTAGACTCGCAT 57.142 42.857 0.00 0.00 0.00 4.73
1772 1790 1.775869 ATCGCATGTAGACTCGCATG 58.224 50.000 12.87 12.87 43.71 4.06
1773 1791 0.455815 TCGCATGTAGACTCGCATGT 59.544 50.000 16.46 0.00 43.04 3.21
1774 1792 0.848942 CGCATGTAGACTCGCATGTC 59.151 55.000 16.46 10.54 43.04 3.06
1775 1793 1.798813 CGCATGTAGACTCGCATGTCA 60.799 52.381 16.46 0.00 43.04 3.58
1776 1794 1.857217 GCATGTAGACTCGCATGTCAG 59.143 52.381 16.46 0.00 43.04 3.51
1777 1795 2.467838 CATGTAGACTCGCATGTCAGG 58.532 52.381 8.49 0.00 39.27 3.86
1778 1796 1.834188 TGTAGACTCGCATGTCAGGA 58.166 50.000 8.49 0.00 39.27 3.86
1779 1797 1.745653 TGTAGACTCGCATGTCAGGAG 59.254 52.381 8.49 0.00 39.27 3.69
1780 1798 1.066303 GTAGACTCGCATGTCAGGAGG 59.934 57.143 8.49 0.00 39.27 4.30
1781 1799 0.613292 AGACTCGCATGTCAGGAGGT 60.613 55.000 8.49 0.00 39.27 3.85
1782 1800 0.459237 GACTCGCATGTCAGGAGGTG 60.459 60.000 0.00 0.00 36.97 4.00
1783 1801 0.900182 ACTCGCATGTCAGGAGGTGA 60.900 55.000 0.00 0.00 32.11 4.02
1784 1802 0.463204 CTCGCATGTCAGGAGGTGAT 59.537 55.000 0.00 0.00 37.56 3.06
1785 1803 0.176449 TCGCATGTCAGGAGGTGATG 59.824 55.000 0.00 0.00 37.56 3.07
1786 1804 1.434622 CGCATGTCAGGAGGTGATGC 61.435 60.000 0.00 0.00 37.68 3.91
1787 1805 1.099879 GCATGTCAGGAGGTGATGCC 61.100 60.000 0.00 0.00 35.81 4.40
1788 1806 0.465097 CATGTCAGGAGGTGATGCCC 60.465 60.000 0.00 0.00 37.56 5.36
1789 1807 1.639635 ATGTCAGGAGGTGATGCCCC 61.640 60.000 0.00 0.00 37.56 5.80
1790 1808 3.083349 TCAGGAGGTGATGCCCCG 61.083 66.667 0.00 0.00 38.26 5.73
1791 1809 4.864334 CAGGAGGTGATGCCCCGC 62.864 72.222 0.00 0.00 38.26 6.13
1793 1811 4.424711 GGAGGTGATGCCCCGCAA 62.425 66.667 0.00 0.00 43.62 4.85
1794 1812 2.124151 GAGGTGATGCCCCGCAAT 60.124 61.111 0.00 0.00 43.62 3.56
1795 1813 2.440796 AGGTGATGCCCCGCAATG 60.441 61.111 0.00 0.00 43.62 2.82
1796 1814 2.755469 GGTGATGCCCCGCAATGT 60.755 61.111 0.00 0.00 43.62 2.71
1797 1815 2.491152 GTGATGCCCCGCAATGTG 59.509 61.111 0.00 0.00 43.62 3.21
1798 1816 2.035469 TGATGCCCCGCAATGTGT 59.965 55.556 0.00 0.00 43.62 3.72
1799 1817 2.045708 TGATGCCCCGCAATGTGTC 61.046 57.895 0.00 0.00 43.62 3.67
1800 1818 2.035469 ATGCCCCGCAATGTGTCA 59.965 55.556 0.00 0.00 43.62 3.58
1801 1819 1.996786 GATGCCCCGCAATGTGTCAG 61.997 60.000 0.00 0.00 43.62 3.51
1802 1820 2.359850 GCCCCGCAATGTGTCAGA 60.360 61.111 0.00 0.00 0.00 3.27
1803 1821 1.750399 GCCCCGCAATGTGTCAGAT 60.750 57.895 0.00 0.00 0.00 2.90
1804 1822 1.315257 GCCCCGCAATGTGTCAGATT 61.315 55.000 0.00 0.00 0.00 2.40
1805 1823 0.734889 CCCCGCAATGTGTCAGATTC 59.265 55.000 0.00 0.00 0.00 2.52
1806 1824 1.679944 CCCCGCAATGTGTCAGATTCT 60.680 52.381 0.00 0.00 0.00 2.40
1807 1825 2.086869 CCCGCAATGTGTCAGATTCTT 58.913 47.619 0.00 0.00 0.00 2.52
1808 1826 2.489329 CCCGCAATGTGTCAGATTCTTT 59.511 45.455 0.00 0.00 0.00 2.52
1809 1827 3.057315 CCCGCAATGTGTCAGATTCTTTT 60.057 43.478 0.00 0.00 0.00 2.27
1810 1828 4.549458 CCGCAATGTGTCAGATTCTTTTT 58.451 39.130 0.00 0.00 0.00 1.94
1829 1847 2.558313 GCAGGTTGCGAGTGCTTC 59.442 61.111 1.52 0.00 43.34 3.86
1830 1848 2.253758 GCAGGTTGCGAGTGCTTCA 61.254 57.895 1.52 0.00 43.34 3.02
1831 1849 1.571460 CAGGTTGCGAGTGCTTCAC 59.429 57.895 0.00 0.00 43.34 3.18
1832 1850 1.598130 AGGTTGCGAGTGCTTCACC 60.598 57.895 0.00 0.00 43.34 4.02
1833 1851 2.617274 GGTTGCGAGTGCTTCACCC 61.617 63.158 0.00 0.00 43.34 4.61
1834 1852 2.664851 TTGCGAGTGCTTCACCCG 60.665 61.111 0.00 0.00 43.34 5.28
1837 1855 2.664851 CGAGTGCTTCACCCGCAA 60.665 61.111 0.00 0.00 39.39 4.85
1838 1856 2.250939 CGAGTGCTTCACCCGCAAA 61.251 57.895 0.00 0.00 39.39 3.68
1839 1857 1.781025 CGAGTGCTTCACCCGCAAAA 61.781 55.000 0.00 0.00 39.39 2.44
1840 1858 0.383949 GAGTGCTTCACCCGCAAAAA 59.616 50.000 0.00 0.00 39.39 1.94
1841 1859 0.102300 AGTGCTTCACCCGCAAAAAC 59.898 50.000 0.00 0.00 39.39 2.43
1842 1860 0.179124 GTGCTTCACCCGCAAAAACA 60.179 50.000 0.00 0.00 39.39 2.83
1843 1861 0.749649 TGCTTCACCCGCAAAAACAT 59.250 45.000 0.00 0.00 33.87 2.71
1844 1862 1.137872 TGCTTCACCCGCAAAAACATT 59.862 42.857 0.00 0.00 33.87 2.71
1845 1863 2.362397 TGCTTCACCCGCAAAAACATTA 59.638 40.909 0.00 0.00 33.87 1.90
1846 1864 2.729360 GCTTCACCCGCAAAAACATTAC 59.271 45.455 0.00 0.00 0.00 1.89
1847 1865 3.797184 GCTTCACCCGCAAAAACATTACA 60.797 43.478 0.00 0.00 0.00 2.41
1848 1866 3.357166 TCACCCGCAAAAACATTACAC 57.643 42.857 0.00 0.00 0.00 2.90
1849 1867 2.952978 TCACCCGCAAAAACATTACACT 59.047 40.909 0.00 0.00 0.00 3.55
1850 1868 3.381908 TCACCCGCAAAAACATTACACTT 59.618 39.130 0.00 0.00 0.00 3.16
1851 1869 3.489047 CACCCGCAAAAACATTACACTTG 59.511 43.478 0.00 0.00 0.00 3.16
1852 1870 3.131400 ACCCGCAAAAACATTACACTTGT 59.869 39.130 0.00 0.00 0.00 3.16
1853 1871 4.116238 CCCGCAAAAACATTACACTTGTT 58.884 39.130 0.00 0.00 38.91 2.83
1854 1872 4.026145 CCCGCAAAAACATTACACTTGTTG 60.026 41.667 0.00 0.00 37.38 3.33
1855 1873 4.026145 CCGCAAAAACATTACACTTGTTGG 60.026 41.667 0.00 0.00 37.38 3.77
1856 1874 4.564769 CGCAAAAACATTACACTTGTTGGT 59.435 37.500 0.00 0.00 37.38 3.67
1857 1875 5.744345 CGCAAAAACATTACACTTGTTGGTA 59.256 36.000 0.00 0.00 37.38 3.25
1858 1876 6.291374 CGCAAAAACATTACACTTGTTGGTAC 60.291 38.462 0.00 0.00 37.38 3.34
1859 1877 6.754675 GCAAAAACATTACACTTGTTGGTACT 59.245 34.615 0.00 0.00 37.38 2.73
1860 1878 7.276878 GCAAAAACATTACACTTGTTGGTACTT 59.723 33.333 0.00 0.00 37.38 2.24
1861 1879 9.145865 CAAAAACATTACACTTGTTGGTACTTT 57.854 29.630 0.00 0.00 37.38 2.66
1862 1880 8.696410 AAAACATTACACTTGTTGGTACTTTG 57.304 30.769 0.00 0.00 37.38 2.77
1863 1881 7.399245 AACATTACACTTGTTGGTACTTTGT 57.601 32.000 0.00 0.00 36.02 2.83
1864 1882 6.791303 ACATTACACTTGTTGGTACTTTGTG 58.209 36.000 0.00 0.00 0.00 3.33
1865 1883 6.376018 ACATTACACTTGTTGGTACTTTGTGT 59.624 34.615 0.00 0.00 36.94 3.72
1866 1884 4.957759 ACACTTGTTGGTACTTTGTGTC 57.042 40.909 0.00 0.00 32.02 3.67
1867 1885 3.372822 ACACTTGTTGGTACTTTGTGTCG 59.627 43.478 0.00 0.00 32.02 4.35
1868 1886 3.372822 CACTTGTTGGTACTTTGTGTCGT 59.627 43.478 0.00 0.00 0.00 4.34
1869 1887 3.372822 ACTTGTTGGTACTTTGTGTCGTG 59.627 43.478 0.00 0.00 0.00 4.35
1870 1888 1.666700 TGTTGGTACTTTGTGTCGTGC 59.333 47.619 0.00 0.00 0.00 5.34
1871 1889 1.666700 GTTGGTACTTTGTGTCGTGCA 59.333 47.619 0.00 0.00 0.00 4.57
1872 1890 2.248280 TGGTACTTTGTGTCGTGCAT 57.752 45.000 0.00 0.00 0.00 3.96
1873 1891 3.388345 TGGTACTTTGTGTCGTGCATA 57.612 42.857 0.00 0.00 0.00 3.14
1874 1892 3.322369 TGGTACTTTGTGTCGTGCATAG 58.678 45.455 0.00 0.00 0.00 2.23
1875 1893 2.671396 GGTACTTTGTGTCGTGCATAGG 59.329 50.000 0.00 0.00 0.00 2.57
1876 1894 2.543777 ACTTTGTGTCGTGCATAGGT 57.456 45.000 0.00 0.00 0.00 3.08
1877 1895 2.143122 ACTTTGTGTCGTGCATAGGTG 58.857 47.619 0.00 0.00 0.00 4.00
1891 1909 3.397482 CATAGGTGCTTAGATGAGGTGC 58.603 50.000 0.00 0.00 0.00 5.01
1892 1910 1.577736 AGGTGCTTAGATGAGGTGCT 58.422 50.000 0.00 0.00 0.00 4.40
1893 1911 2.752030 AGGTGCTTAGATGAGGTGCTA 58.248 47.619 0.00 0.00 0.00 3.49
1894 1912 3.107601 AGGTGCTTAGATGAGGTGCTAA 58.892 45.455 0.00 0.00 0.00 3.09
1895 1913 3.133721 AGGTGCTTAGATGAGGTGCTAAG 59.866 47.826 0.00 0.00 43.95 2.18
1913 1931 7.867445 TGCTAAGCACATTAAAAAGTTTAGC 57.133 32.000 17.77 17.77 45.21 3.09
1914 1932 7.867445 GCTAAGCACATTAAAAAGTTTAGCA 57.133 32.000 18.80 0.00 44.72 3.49
1915 1933 8.293114 GCTAAGCACATTAAAAAGTTTAGCAA 57.707 30.769 18.80 0.00 44.72 3.91
1916 1934 8.214472 GCTAAGCACATTAAAAAGTTTAGCAAC 58.786 33.333 18.80 0.00 44.72 4.17
1917 1935 9.463443 CTAAGCACATTAAAAAGTTTAGCAACT 57.537 29.630 0.00 0.00 45.89 3.16
1919 1937 9.810545 AAGCACATTAAAAAGTTTAGCAACTAA 57.189 25.926 0.00 0.00 42.89 2.24
1920 1938 9.981114 AGCACATTAAAAAGTTTAGCAACTAAT 57.019 25.926 0.00 0.00 42.89 1.73
1928 1946 9.646427 AAAAAGTTTAGCAACTAATGTTCACAA 57.354 25.926 0.00 0.00 42.89 3.33
1929 1947 9.816354 AAAAGTTTAGCAACTAATGTTCACAAT 57.184 25.926 0.00 0.00 42.89 2.71
1930 1948 8.801715 AAGTTTAGCAACTAATGTTCACAATG 57.198 30.769 0.00 0.00 42.89 2.82
1931 1949 6.863126 AGTTTAGCAACTAATGTTCACAATGC 59.137 34.615 0.00 0.00 41.81 3.56
1932 1950 4.852134 AGCAACTAATGTTCACAATGCA 57.148 36.364 0.00 0.00 33.52 3.96
1933 1951 4.549458 AGCAACTAATGTTCACAATGCAC 58.451 39.130 0.00 0.00 33.52 4.57
1934 1952 4.279169 AGCAACTAATGTTCACAATGCACT 59.721 37.500 0.00 0.00 33.52 4.40
1935 1953 5.473162 AGCAACTAATGTTCACAATGCACTA 59.527 36.000 0.00 0.00 33.52 2.74
1936 1954 5.796935 GCAACTAATGTTCACAATGCACTAG 59.203 40.000 0.00 0.00 33.52 2.57
1937 1955 6.348458 GCAACTAATGTTCACAATGCACTAGA 60.348 38.462 0.00 0.00 33.52 2.43
1938 1956 7.584108 CAACTAATGTTCACAATGCACTAGAA 58.416 34.615 0.00 0.00 33.52 2.10
1939 1957 7.133891 ACTAATGTTCACAATGCACTAGAAC 57.866 36.000 13.25 13.25 39.11 3.01
1942 1960 5.361135 TGTTCACAATGCACTAGAACATG 57.639 39.130 16.93 0.00 42.35 3.21
1943 1961 4.821260 TGTTCACAATGCACTAGAACATGT 59.179 37.500 16.93 0.00 42.35 3.21
1944 1962 5.994668 TGTTCACAATGCACTAGAACATGTA 59.005 36.000 16.93 1.31 42.35 2.29
1945 1963 6.147656 TGTTCACAATGCACTAGAACATGTAG 59.852 38.462 16.93 0.00 42.35 2.74
1946 1964 5.178061 TCACAATGCACTAGAACATGTAGG 58.822 41.667 0.00 0.00 0.00 3.18
1947 1965 3.941483 ACAATGCACTAGAACATGTAGGC 59.059 43.478 0.00 0.00 0.00 3.93
1948 1966 3.912496 ATGCACTAGAACATGTAGGCA 57.088 42.857 0.00 5.82 32.11 4.75
1949 1967 3.912496 TGCACTAGAACATGTAGGCAT 57.088 42.857 0.00 0.00 35.32 4.40
1969 1987 2.672996 GTTGCTGCACCCGTCCAT 60.673 61.111 0.00 0.00 0.00 3.41
1970 1988 2.115052 TTGCTGCACCCGTCCATT 59.885 55.556 0.00 0.00 0.00 3.16
1971 1989 1.530419 TTGCTGCACCCGTCCATTT 60.530 52.632 0.00 0.00 0.00 2.32
1972 1990 1.112315 TTGCTGCACCCGTCCATTTT 61.112 50.000 0.00 0.00 0.00 1.82
1973 1991 1.112315 TGCTGCACCCGTCCATTTTT 61.112 50.000 0.00 0.00 0.00 1.94
1974 1992 0.667184 GCTGCACCCGTCCATTTTTG 60.667 55.000 0.00 0.00 0.00 2.44
1975 1993 0.038343 CTGCACCCGTCCATTTTTGG 60.038 55.000 0.00 0.00 0.00 3.28
1976 1994 0.468214 TGCACCCGTCCATTTTTGGA 60.468 50.000 0.00 0.00 35.23 3.53
1977 1995 0.676736 GCACCCGTCCATTTTTGGAA 59.323 50.000 0.00 0.00 40.06 3.53
1978 1996 1.604438 GCACCCGTCCATTTTTGGAAC 60.604 52.381 0.00 0.00 40.06 3.62
1979 1997 1.000394 CACCCGTCCATTTTTGGAACC 60.000 52.381 0.00 0.00 40.06 3.62
1980 1998 0.242555 CCCGTCCATTTTTGGAACCG 59.757 55.000 0.00 0.00 40.06 4.44
1981 1999 1.240256 CCGTCCATTTTTGGAACCGA 58.760 50.000 6.60 0.00 40.06 4.69
1982 2000 1.609555 CCGTCCATTTTTGGAACCGAA 59.390 47.619 6.60 0.00 40.06 4.30
1983 2001 2.230266 CCGTCCATTTTTGGAACCGAAT 59.770 45.455 6.60 0.00 40.06 3.34
1984 2002 3.498082 CGTCCATTTTTGGAACCGAATC 58.502 45.455 0.00 0.00 40.06 2.52
1985 2003 3.057876 CGTCCATTTTTGGAACCGAATCA 60.058 43.478 0.00 0.00 40.06 2.57
1986 2004 4.380444 CGTCCATTTTTGGAACCGAATCAT 60.380 41.667 0.00 0.00 40.06 2.45
1987 2005 5.163703 CGTCCATTTTTGGAACCGAATCATA 60.164 40.000 0.00 0.00 40.06 2.15
1988 2006 6.459573 CGTCCATTTTTGGAACCGAATCATAT 60.460 38.462 0.00 0.00 40.06 1.78
1989 2007 7.254966 CGTCCATTTTTGGAACCGAATCATATA 60.255 37.037 0.00 0.00 40.06 0.86
1990 2008 8.410141 GTCCATTTTTGGAACCGAATCATATAA 58.590 33.333 0.00 0.00 40.06 0.98
1991 2009 9.142014 TCCATTTTTGGAACCGAATCATATAAT 57.858 29.630 0.00 0.00 34.56 1.28
1992 2010 9.762933 CCATTTTTGGAACCGAATCATATAATT 57.237 29.630 0.00 0.00 0.00 1.40
1997 2015 9.964303 TTTGGAACCGAATCATATAATTGATTG 57.036 29.630 6.34 0.00 44.35 2.67
1998 2016 8.916628 TGGAACCGAATCATATAATTGATTGA 57.083 30.769 6.34 0.00 44.35 2.57
1999 2017 9.348476 TGGAACCGAATCATATAATTGATTGAA 57.652 29.630 6.34 0.00 44.35 2.69
2016 2034 8.883954 TTGATTGAAAATTGTAGATTGTTGCA 57.116 26.923 0.00 0.00 0.00 4.08
2017 2035 8.883954 TGATTGAAAATTGTAGATTGTTGCAA 57.116 26.923 0.00 0.00 0.00 4.08
2018 2036 8.763356 TGATTGAAAATTGTAGATTGTTGCAAC 58.237 29.630 22.83 22.83 0.00 4.17
2019 2037 8.659925 ATTGAAAATTGTAGATTGTTGCAACA 57.340 26.923 27.96 27.96 37.08 3.33
2020 2038 7.462109 TGAAAATTGTAGATTGTTGCAACAC 57.538 32.000 31.17 20.51 38.92 3.32
2021 2039 7.038048 TGAAAATTGTAGATTGTTGCAACACA 58.962 30.769 31.17 21.71 38.92 3.72
2022 2040 7.710044 TGAAAATTGTAGATTGTTGCAACACAT 59.290 29.630 31.17 24.60 38.92 3.21
2023 2041 7.642071 AAATTGTAGATTGTTGCAACACATC 57.358 32.000 31.17 29.46 38.92 3.06
2024 2042 5.764487 TTGTAGATTGTTGCAACACATCA 57.236 34.783 32.47 24.29 38.92 3.07
2025 2043 5.963176 TGTAGATTGTTGCAACACATCAT 57.037 34.783 32.47 25.20 38.92 2.45
2026 2044 7.446001 TTGTAGATTGTTGCAACACATCATA 57.554 32.000 32.47 24.54 38.92 2.15
2027 2045 7.446001 TGTAGATTGTTGCAACACATCATAA 57.554 32.000 32.47 21.32 38.92 1.90
2028 2046 7.880105 TGTAGATTGTTGCAACACATCATAAA 58.120 30.769 32.47 20.79 38.92 1.40
2029 2047 8.355913 TGTAGATTGTTGCAACACATCATAAAA 58.644 29.630 32.47 20.27 38.92 1.52
2030 2048 9.357652 GTAGATTGTTGCAACACATCATAAAAT 57.642 29.630 32.47 22.88 38.92 1.82
2031 2049 8.836268 AGATTGTTGCAACACATCATAAAATT 57.164 26.923 32.47 19.81 38.92 1.82
2032 2050 8.928733 AGATTGTTGCAACACATCATAAAATTC 58.071 29.630 32.47 17.05 38.92 2.17
2033 2051 8.604640 ATTGTTGCAACACATCATAAAATTCA 57.395 26.923 31.17 12.21 38.92 2.57
2034 2052 7.405469 TGTTGCAACACATCATAAAATTCAC 57.595 32.000 27.96 0.00 33.17 3.18
2035 2053 6.982724 TGTTGCAACACATCATAAAATTCACA 59.017 30.769 27.96 0.00 33.17 3.58
2036 2054 7.656542 TGTTGCAACACATCATAAAATTCACAT 59.343 29.630 27.96 0.00 33.17 3.21
2037 2055 8.497554 GTTGCAACACATCATAAAATTCACATT 58.502 29.630 24.52 0.00 0.00 2.71
2038 2056 8.019769 TGCAACACATCATAAAATTCACATTG 57.980 30.769 0.00 0.00 0.00 2.82
2039 2057 7.656542 TGCAACACATCATAAAATTCACATTGT 59.343 29.630 0.00 0.00 0.00 2.71
2040 2058 8.497554 GCAACACATCATAAAATTCACATTGTT 58.502 29.630 0.00 0.00 0.00 2.83
2042 2060 9.761504 AACACATCATAAAATTCACATTGTTCA 57.238 25.926 0.00 0.00 0.00 3.18
2043 2061 9.932207 ACACATCATAAAATTCACATTGTTCAT 57.068 25.926 0.00 0.00 0.00 2.57
2057 2075 9.949174 TCACATTGTTCATATTACATTGTATGC 57.051 29.630 11.81 0.00 37.76 3.14
2058 2076 9.733219 CACATTGTTCATATTACATTGTATGCA 57.267 29.630 11.81 0.00 37.76 3.96
2070 2088 6.735678 ACATTGTATGCATGTAAGAAACGA 57.264 33.333 10.16 0.00 0.00 3.85
2071 2089 7.139896 ACATTGTATGCATGTAAGAAACGAA 57.860 32.000 10.16 0.00 0.00 3.85
2072 2090 7.589395 ACATTGTATGCATGTAAGAAACGAAA 58.411 30.769 10.16 0.00 0.00 3.46
2073 2091 8.079203 ACATTGTATGCATGTAAGAAACGAAAA 58.921 29.630 10.16 0.00 0.00 2.29
2074 2092 7.845617 TTGTATGCATGTAAGAAACGAAAAC 57.154 32.000 10.16 0.00 0.00 2.43
2075 2093 6.375377 TGTATGCATGTAAGAAACGAAAACC 58.625 36.000 10.16 0.00 0.00 3.27
2076 2094 4.902443 TGCATGTAAGAAACGAAAACCA 57.098 36.364 0.00 0.00 0.00 3.67
2077 2095 4.854399 TGCATGTAAGAAACGAAAACCAG 58.146 39.130 0.00 0.00 0.00 4.00
2078 2096 4.576873 TGCATGTAAGAAACGAAAACCAGA 59.423 37.500 0.00 0.00 0.00 3.86
2079 2097 4.909880 GCATGTAAGAAACGAAAACCAGAC 59.090 41.667 0.00 0.00 0.00 3.51
2080 2098 5.504994 GCATGTAAGAAACGAAAACCAGACA 60.505 40.000 0.00 0.00 0.00 3.41
2081 2099 5.473796 TGTAAGAAACGAAAACCAGACAC 57.526 39.130 0.00 0.00 0.00 3.67
2082 2100 4.936411 TGTAAGAAACGAAAACCAGACACA 59.064 37.500 0.00 0.00 0.00 3.72
2083 2101 5.411977 TGTAAGAAACGAAAACCAGACACAA 59.588 36.000 0.00 0.00 0.00 3.33
2084 2102 5.379732 AAGAAACGAAAACCAGACACAAA 57.620 34.783 0.00 0.00 0.00 2.83
2085 2103 5.379732 AGAAACGAAAACCAGACACAAAA 57.620 34.783 0.00 0.00 0.00 2.44
2086 2104 5.961272 AGAAACGAAAACCAGACACAAAAT 58.039 33.333 0.00 0.00 0.00 1.82
2087 2105 7.090953 AGAAACGAAAACCAGACACAAAATA 57.909 32.000 0.00 0.00 0.00 1.40
2088 2106 7.193595 AGAAACGAAAACCAGACACAAAATAG 58.806 34.615 0.00 0.00 0.00 1.73
2089 2107 6.445357 AACGAAAACCAGACACAAAATAGT 57.555 33.333 0.00 0.00 0.00 2.12
2090 2108 7.556733 AACGAAAACCAGACACAAAATAGTA 57.443 32.000 0.00 0.00 0.00 1.82
2091 2109 6.951643 ACGAAAACCAGACACAAAATAGTAC 58.048 36.000 0.00 0.00 0.00 2.73
2092 2110 6.539464 ACGAAAACCAGACACAAAATAGTACA 59.461 34.615 0.00 0.00 0.00 2.90
2093 2111 7.227910 ACGAAAACCAGACACAAAATAGTACAT 59.772 33.333 0.00 0.00 0.00 2.29
2094 2112 8.714179 CGAAAACCAGACACAAAATAGTACATA 58.286 33.333 0.00 0.00 0.00 2.29
2095 2113 9.821662 GAAAACCAGACACAAAATAGTACATAC 57.178 33.333 0.00 0.00 0.00 2.39
2096 2114 8.911918 AAACCAGACACAAAATAGTACATACA 57.088 30.769 0.00 0.00 0.00 2.29
2097 2115 8.911918 AACCAGACACAAAATAGTACATACAA 57.088 30.769 0.00 0.00 0.00 2.41
2098 2116 8.547967 ACCAGACACAAAATAGTACATACAAG 57.452 34.615 0.00 0.00 0.00 3.16
2099 2117 7.119262 ACCAGACACAAAATAGTACATACAAGC 59.881 37.037 0.00 0.00 0.00 4.01
2100 2118 7.119116 CCAGACACAAAATAGTACATACAAGCA 59.881 37.037 0.00 0.00 0.00 3.91
2101 2119 8.171196 CAGACACAAAATAGTACATACAAGCAG 58.829 37.037 0.00 0.00 0.00 4.24
2102 2120 8.094548 AGACACAAAATAGTACATACAAGCAGA 58.905 33.333 0.00 0.00 0.00 4.26
2103 2121 8.029642 ACACAAAATAGTACATACAAGCAGAC 57.970 34.615 0.00 0.00 0.00 3.51
2104 2122 7.659799 ACACAAAATAGTACATACAAGCAGACA 59.340 33.333 0.00 0.00 0.00 3.41
2105 2123 8.171196 CACAAAATAGTACATACAAGCAGACAG 58.829 37.037 0.00 0.00 0.00 3.51
2106 2124 6.910536 AAATAGTACATACAAGCAGACAGC 57.089 37.500 0.00 0.00 46.19 4.40
2123 2141 7.189512 GCAGACAGCTAATTAATGTAGTTTGG 58.810 38.462 3.59 0.00 41.15 3.28
2124 2142 7.065803 GCAGACAGCTAATTAATGTAGTTTGGA 59.934 37.037 3.59 0.00 41.15 3.53
2125 2143 8.391106 CAGACAGCTAATTAATGTAGTTTGGAC 58.609 37.037 3.59 0.00 0.00 4.02
2126 2144 8.100791 AGACAGCTAATTAATGTAGTTTGGACA 58.899 33.333 3.59 0.00 0.00 4.02
2127 2145 8.807948 ACAGCTAATTAATGTAGTTTGGACAT 57.192 30.769 2.00 0.00 39.22 3.06
2128 2146 9.899661 ACAGCTAATTAATGTAGTTTGGACATA 57.100 29.630 2.00 0.00 36.50 2.29
2155 2173 6.505039 AAGAATTTAACTTTTTGGAACGCG 57.495 33.333 3.53 3.53 0.00 6.01
2156 2174 5.823353 AGAATTTAACTTTTTGGAACGCGA 58.177 33.333 15.93 0.00 0.00 5.87
2157 2175 6.267070 AGAATTTAACTTTTTGGAACGCGAA 58.733 32.000 15.93 0.00 0.00 4.70
2158 2176 5.876576 ATTTAACTTTTTGGAACGCGAAC 57.123 34.783 15.93 5.85 0.00 3.95
2160 2178 1.008329 ACTTTTTGGAACGCGAACGA 58.992 45.000 15.93 0.00 43.93 3.85
2161 2179 1.397692 ACTTTTTGGAACGCGAACGAA 59.602 42.857 15.93 6.89 43.93 3.85
2162 2180 2.032426 ACTTTTTGGAACGCGAACGAAT 59.968 40.909 15.93 0.00 43.93 3.34
2163 2181 2.759538 TTTTGGAACGCGAACGAATT 57.240 40.000 15.93 0.00 43.93 2.17
2164 2182 3.874400 TTTTGGAACGCGAACGAATTA 57.126 38.095 15.93 0.00 43.93 1.40
2165 2183 2.859870 TTGGAACGCGAACGAATTAC 57.140 45.000 15.93 0.00 43.93 1.89
2166 2184 2.068837 TGGAACGCGAACGAATTACT 57.931 45.000 15.93 0.00 43.93 2.24
2167 2185 1.722464 TGGAACGCGAACGAATTACTG 59.278 47.619 15.93 0.00 43.93 2.74
2168 2186 1.526384 GGAACGCGAACGAATTACTGC 60.526 52.381 15.93 0.00 43.93 4.40
2169 2187 1.125384 GAACGCGAACGAATTACTGCA 59.875 47.619 15.93 0.00 43.93 4.41
2170 2188 1.355971 ACGCGAACGAATTACTGCAT 58.644 45.000 15.93 0.00 43.93 3.96
2171 2189 1.060553 ACGCGAACGAATTACTGCATG 59.939 47.619 15.93 0.00 43.93 4.06
2172 2190 1.592110 CGCGAACGAATTACTGCATGG 60.592 52.381 0.00 0.00 43.93 3.66
2173 2191 1.396996 GCGAACGAATTACTGCATGGT 59.603 47.619 0.00 0.00 0.00 3.55
2174 2192 2.787723 GCGAACGAATTACTGCATGGTG 60.788 50.000 0.00 0.00 0.00 4.17
2175 2193 2.785679 GAACGAATTACTGCATGGTGC 58.214 47.619 0.00 0.00 45.29 5.01
2187 2205 2.609350 GCATGGTGCACCTTGTAATTG 58.391 47.619 37.75 23.51 44.26 2.32
2188 2206 2.609350 CATGGTGCACCTTGTAATTGC 58.391 47.619 33.20 9.14 36.67 3.56
2189 2207 1.697284 TGGTGCACCTTGTAATTGCA 58.303 45.000 34.75 9.34 43.89 4.08
2193 2211 3.300852 TGCACCTTGTAATTGCACATG 57.699 42.857 0.00 0.00 41.29 3.21
2194 2212 2.889678 TGCACCTTGTAATTGCACATGA 59.110 40.909 0.00 0.00 41.29 3.07
2195 2213 3.510753 TGCACCTTGTAATTGCACATGAT 59.489 39.130 0.00 0.00 41.29 2.45
2196 2214 4.021280 TGCACCTTGTAATTGCACATGATT 60.021 37.500 0.00 0.00 41.29 2.57
2197 2215 4.327898 GCACCTTGTAATTGCACATGATTG 59.672 41.667 0.00 0.00 36.22 2.67
2198 2216 5.712004 CACCTTGTAATTGCACATGATTGA 58.288 37.500 0.00 0.00 0.00 2.57
2199 2217 6.157904 CACCTTGTAATTGCACATGATTGAA 58.842 36.000 0.00 0.00 0.00 2.69
2200 2218 6.645827 CACCTTGTAATTGCACATGATTGAAA 59.354 34.615 0.00 0.00 0.00 2.69
2201 2219 7.171167 CACCTTGTAATTGCACATGATTGAAAA 59.829 33.333 0.00 0.00 0.00 2.29
2202 2220 7.171337 ACCTTGTAATTGCACATGATTGAAAAC 59.829 33.333 0.00 0.00 0.00 2.43
2203 2221 7.360269 CCTTGTAATTGCACATGATTGAAAACC 60.360 37.037 0.00 0.00 0.00 3.27
2204 2222 6.519382 TGTAATTGCACATGATTGAAAACCA 58.481 32.000 0.00 0.00 0.00 3.67
2205 2223 6.988580 TGTAATTGCACATGATTGAAAACCAA 59.011 30.769 0.00 0.00 39.41 3.67
2206 2224 6.939132 AATTGCACATGATTGAAAACCAAA 57.061 29.167 0.00 0.00 38.43 3.28
2207 2225 6.939132 ATTGCACATGATTGAAAACCAAAA 57.061 29.167 0.00 0.00 38.43 2.44
2208 2226 5.987777 TGCACATGATTGAAAACCAAAAG 57.012 34.783 0.00 0.00 38.43 2.27
2209 2227 5.426504 TGCACATGATTGAAAACCAAAAGT 58.573 33.333 0.00 0.00 38.43 2.66
2210 2228 5.523188 TGCACATGATTGAAAACCAAAAGTC 59.477 36.000 0.00 0.00 38.43 3.01
2211 2229 5.523188 GCACATGATTGAAAACCAAAAGTCA 59.477 36.000 0.00 0.00 38.43 3.41
2212 2230 6.292488 GCACATGATTGAAAACCAAAAGTCAG 60.292 38.462 0.00 0.00 38.43 3.51
2213 2231 6.757947 CACATGATTGAAAACCAAAAGTCAGT 59.242 34.615 0.00 0.00 38.43 3.41
2214 2232 6.757947 ACATGATTGAAAACCAAAAGTCAGTG 59.242 34.615 0.00 0.00 38.43 3.66
2215 2233 6.522625 TGATTGAAAACCAAAAGTCAGTGA 57.477 33.333 0.00 0.00 38.43 3.41
2216 2234 6.563422 TGATTGAAAACCAAAAGTCAGTGAG 58.437 36.000 0.00 0.00 38.43 3.51
2217 2235 6.376864 TGATTGAAAACCAAAAGTCAGTGAGA 59.623 34.615 0.00 0.00 38.43 3.27
2218 2236 6.582677 TTGAAAACCAAAAGTCAGTGAGAA 57.417 33.333 0.00 0.00 0.00 2.87
2219 2237 6.194796 TGAAAACCAAAAGTCAGTGAGAAG 57.805 37.500 0.00 0.00 0.00 2.85
2220 2238 5.943416 TGAAAACCAAAAGTCAGTGAGAAGA 59.057 36.000 0.00 0.00 0.00 2.87
2221 2239 6.094048 TGAAAACCAAAAGTCAGTGAGAAGAG 59.906 38.462 0.00 0.00 0.00 2.85
2222 2240 4.762289 ACCAAAAGTCAGTGAGAAGAGT 57.238 40.909 0.00 0.00 0.00 3.24
2223 2241 5.104259 ACCAAAAGTCAGTGAGAAGAGTT 57.896 39.130 0.00 0.00 0.00 3.01
2224 2242 5.501156 ACCAAAAGTCAGTGAGAAGAGTTT 58.499 37.500 0.00 0.00 38.63 2.66
2225 2243 6.650120 ACCAAAAGTCAGTGAGAAGAGTTTA 58.350 36.000 0.00 0.00 36.63 2.01
2226 2244 7.283329 ACCAAAAGTCAGTGAGAAGAGTTTAT 58.717 34.615 0.00 0.00 36.63 1.40
2227 2245 7.775561 ACCAAAAGTCAGTGAGAAGAGTTTATT 59.224 33.333 0.00 0.00 36.63 1.40
2228 2246 9.273016 CCAAAAGTCAGTGAGAAGAGTTTATTA 57.727 33.333 0.00 0.00 36.63 0.98
2258 2276 8.986477 AAAACTGGTATTTTCAACAGATATGC 57.014 30.769 0.00 0.00 35.08 3.14
2259 2277 6.699575 ACTGGTATTTTCAACAGATATGCC 57.300 37.500 0.00 0.00 35.08 4.40
2260 2278 6.186957 ACTGGTATTTTCAACAGATATGCCA 58.813 36.000 0.00 0.00 35.08 4.92
2261 2279 6.663093 ACTGGTATTTTCAACAGATATGCCAA 59.337 34.615 0.00 0.00 35.08 4.52
2262 2280 7.342799 ACTGGTATTTTCAACAGATATGCCAAT 59.657 33.333 0.00 0.00 35.08 3.16
2263 2281 8.759481 TGGTATTTTCAACAGATATGCCAATA 57.241 30.769 0.00 0.00 0.00 1.90
2264 2282 9.194972 TGGTATTTTCAACAGATATGCCAATAA 57.805 29.630 0.00 0.00 0.00 1.40
2299 2317 9.569122 TTAATATAGTTAAGATCAAAGGGCCAC 57.431 33.333 6.18 0.00 0.00 5.01
2300 2318 3.087370 AGTTAAGATCAAAGGGCCACC 57.913 47.619 6.18 0.00 0.00 4.61
2301 2319 2.100197 GTTAAGATCAAAGGGCCACCC 58.900 52.381 6.18 0.00 45.90 4.61
2313 2331 2.795329 GGGCCACCCATTATCATACTG 58.205 52.381 4.39 0.00 44.65 2.74
2314 2332 2.108250 GGGCCACCCATTATCATACTGT 59.892 50.000 4.39 0.00 44.65 3.55
2315 2333 3.412386 GGCCACCCATTATCATACTGTC 58.588 50.000 0.00 0.00 0.00 3.51
2316 2334 3.067106 GCCACCCATTATCATACTGTCG 58.933 50.000 0.00 0.00 0.00 4.35
2317 2335 3.664107 CCACCCATTATCATACTGTCGG 58.336 50.000 0.00 0.00 0.00 4.79
2318 2336 3.323691 CCACCCATTATCATACTGTCGGA 59.676 47.826 0.00 0.00 0.00 4.55
2319 2337 4.020218 CCACCCATTATCATACTGTCGGAT 60.020 45.833 0.00 0.00 0.00 4.18
2320 2338 5.186992 CCACCCATTATCATACTGTCGGATA 59.813 44.000 0.00 0.00 0.00 2.59
2321 2339 6.127054 CCACCCATTATCATACTGTCGGATAT 60.127 42.308 3.20 0.00 0.00 1.63
2322 2340 6.980978 CACCCATTATCATACTGTCGGATATC 59.019 42.308 0.00 0.00 0.00 1.63
2323 2341 6.183360 ACCCATTATCATACTGTCGGATATCG 60.183 42.308 0.00 0.00 40.90 2.92
2324 2342 6.209361 CCATTATCATACTGTCGGATATCGG 58.791 44.000 3.94 3.94 39.77 4.18
2325 2343 5.830000 TTATCATACTGTCGGATATCGGG 57.170 43.478 10.11 0.00 39.77 5.14
2326 2344 3.150458 TCATACTGTCGGATATCGGGT 57.850 47.619 10.11 3.74 39.77 5.28
2327 2345 3.493334 TCATACTGTCGGATATCGGGTT 58.507 45.455 10.11 0.00 39.77 4.11
2328 2346 3.504906 TCATACTGTCGGATATCGGGTTC 59.495 47.826 10.11 3.21 39.77 3.62
2329 2347 1.038280 ACTGTCGGATATCGGGTTCC 58.962 55.000 10.11 0.00 39.77 3.62
2330 2348 1.037493 CTGTCGGATATCGGGTTCCA 58.963 55.000 10.11 2.72 39.77 3.53
2331 2349 1.000163 CTGTCGGATATCGGGTTCCAG 60.000 57.143 10.11 7.71 39.77 3.86
2332 2350 0.319641 GTCGGATATCGGGTTCCAGC 60.320 60.000 10.11 0.00 39.77 4.85
2333 2351 0.757561 TCGGATATCGGGTTCCAGCA 60.758 55.000 10.11 0.00 39.77 4.41
2334 2352 0.105964 CGGATATCGGGTTCCAGCAA 59.894 55.000 2.40 0.00 34.75 3.91
2335 2353 1.474320 CGGATATCGGGTTCCAGCAAA 60.474 52.381 2.40 0.00 34.75 3.68
2336 2354 2.650322 GGATATCGGGTTCCAGCAAAA 58.350 47.619 0.00 0.00 31.99 2.44
2337 2355 2.357952 GGATATCGGGTTCCAGCAAAAC 59.642 50.000 0.00 0.00 31.99 2.43
2338 2356 1.828979 TATCGGGTTCCAGCAAAACC 58.171 50.000 6.41 6.41 44.52 3.27
2344 2362 3.660501 GGTTCCAGCAAAACCCTTAAG 57.339 47.619 0.00 0.00 40.29 1.85
2345 2363 2.299013 GGTTCCAGCAAAACCCTTAAGG 59.701 50.000 15.14 15.14 40.29 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.202441 CATTCCCTATCCAGGTTTCACAG 58.798 47.826 0.00 0.00 40.79 3.66
349 350 1.434555 CGGATAACGTCTTGCCACAA 58.565 50.000 0.00 0.00 37.93 3.33
483 484 5.163550 GGCCAAGTTACCAGATTTCAATACC 60.164 44.000 0.00 0.00 0.00 2.73
487 488 3.838565 TGGCCAAGTTACCAGATTTCAA 58.161 40.909 0.61 0.00 0.00 2.69
507 508 4.053983 CGATACAATCATCCCACACTCTG 58.946 47.826 0.00 0.00 0.00 3.35
546 547 3.126001 AGCTCAGGAAATTTGACACGA 57.874 42.857 0.00 0.00 0.00 4.35
961 966 3.423539 TGTGAAGAAGAGATGTTGGGG 57.576 47.619 0.00 0.00 0.00 4.96
1072 1078 5.769538 TCCCTCTGGAAAGAAGCTATAGCG 61.770 50.000 18.82 1.80 41.53 4.26
1084 1090 7.846823 AGTATAGAATTTCTCTCCCTCTGGAAA 59.153 37.037 1.27 0.00 41.17 3.13
1101 1107 6.625873 GCAGCTAAGCCAAAAGTATAGAAT 57.374 37.500 0.00 0.00 0.00 2.40
1137 1143 1.545582 CTGTTCCGGCAATTCCACATT 59.454 47.619 0.00 0.00 34.01 2.71
1152 1158 4.915704 TGAATTCAAACGTGGTTCTGTTC 58.084 39.130 5.45 0.00 0.00 3.18
1185 1191 6.505044 ACATAAATCACGTTAAAAGGGGAC 57.495 37.500 0.00 0.00 0.00 4.46
1221 1227 2.882761 CAGACCTGCCCAATATGTGATG 59.117 50.000 0.00 0.00 0.00 3.07
1260 1266 1.372087 CTCCACGCTCCATTGCTTCC 61.372 60.000 0.00 0.00 0.00 3.46
1373 1380 0.036164 AAACGGGATGTAGCAGTGCA 59.964 50.000 19.20 0.00 0.00 4.57
1376 1383 1.207329 GAGGAAACGGGATGTAGCAGT 59.793 52.381 0.00 0.00 0.00 4.40
1378 1385 0.539986 GGAGGAAACGGGATGTAGCA 59.460 55.000 0.00 0.00 0.00 3.49
1427 1437 3.245264 ACCAGATACCAGGAACCCAAAAG 60.245 47.826 0.00 0.00 0.00 2.27
1439 1451 0.474854 ACACACCCCACCAGATACCA 60.475 55.000 0.00 0.00 0.00 3.25
1441 1453 0.035439 CCACACACCCCACCAGATAC 60.035 60.000 0.00 0.00 0.00 2.24
1442 1454 0.474854 ACCACACACCCCACCAGATA 60.475 55.000 0.00 0.00 0.00 1.98
1443 1455 0.474854 TACCACACACCCCACCAGAT 60.475 55.000 0.00 0.00 0.00 2.90
1452 1464 1.279271 AGGAGCTGAATACCACACACC 59.721 52.381 0.00 0.00 0.00 4.16
1526 1542 2.223803 AAACCCAGTGACACCAACAA 57.776 45.000 0.84 0.00 0.00 2.83
1707 1725 8.499403 AAGACATGCCTTTAGATAGTCTTTTC 57.501 34.615 0.00 0.00 40.71 2.29
1710 1728 7.187824 TGAAGACATGCCTTTAGATAGTCTT 57.812 36.000 0.00 0.00 44.67 3.01
1711 1729 6.798427 TGAAGACATGCCTTTAGATAGTCT 57.202 37.500 0.00 0.00 36.51 3.24
1712 1730 6.018343 GCTTGAAGACATGCCTTTAGATAGTC 60.018 42.308 0.00 0.00 40.00 2.59
1713 1731 5.819901 GCTTGAAGACATGCCTTTAGATAGT 59.180 40.000 0.00 0.00 40.00 2.12
1714 1732 6.018098 CAGCTTGAAGACATGCCTTTAGATAG 60.018 42.308 0.00 0.00 44.66 2.08
1715 1733 5.819379 CAGCTTGAAGACATGCCTTTAGATA 59.181 40.000 0.00 0.00 44.66 1.98
1716 1734 4.639310 CAGCTTGAAGACATGCCTTTAGAT 59.361 41.667 0.00 0.00 44.66 1.98
1717 1735 4.005650 CAGCTTGAAGACATGCCTTTAGA 58.994 43.478 0.00 0.00 44.66 2.10
1718 1736 3.427233 GCAGCTTGAAGACATGCCTTTAG 60.427 47.826 0.00 0.00 44.66 1.85
1719 1737 2.489329 GCAGCTTGAAGACATGCCTTTA 59.511 45.455 0.00 0.00 44.66 1.85
1720 1738 1.271656 GCAGCTTGAAGACATGCCTTT 59.728 47.619 0.00 0.00 44.66 3.11
1721 1739 0.886563 GCAGCTTGAAGACATGCCTT 59.113 50.000 0.00 0.00 44.66 4.35
1722 1740 0.037877 AGCAGCTTGAAGACATGCCT 59.962 50.000 11.98 0.00 44.66 4.75
1723 1741 0.170561 CAGCAGCTTGAAGACATGCC 59.829 55.000 11.98 0.00 44.66 4.40
1724 1742 0.456312 GCAGCAGCTTGAAGACATGC 60.456 55.000 0.00 2.80 44.16 4.06
1725 1743 0.170561 GGCAGCAGCTTGAAGACATG 59.829 55.000 0.00 0.00 41.70 3.21
1726 1744 0.964358 GGGCAGCAGCTTGAAGACAT 60.964 55.000 0.00 0.00 41.70 3.06
1727 1745 1.601759 GGGCAGCAGCTTGAAGACA 60.602 57.895 0.00 0.00 41.70 3.41
1728 1746 2.338785 GGGGCAGCAGCTTGAAGAC 61.339 63.158 0.00 0.00 41.70 3.01
1729 1747 2.034687 GGGGCAGCAGCTTGAAGA 59.965 61.111 0.00 0.00 41.70 2.87
1730 1748 0.394762 TATGGGGCAGCAGCTTGAAG 60.395 55.000 0.00 0.00 41.70 3.02
1731 1749 0.259647 ATATGGGGCAGCAGCTTGAA 59.740 50.000 0.00 0.00 41.70 2.69
1732 1750 1.139439 TATATGGGGCAGCAGCTTGA 58.861 50.000 0.00 0.00 41.70 3.02
1733 1751 2.211250 ATATATGGGGCAGCAGCTTG 57.789 50.000 0.00 0.00 41.70 4.01
1734 1752 3.432749 CGATATATATGGGGCAGCAGCTT 60.433 47.826 0.00 0.00 41.70 3.74
1735 1753 2.103771 CGATATATATGGGGCAGCAGCT 59.896 50.000 0.00 0.00 41.70 4.24
1736 1754 2.487934 CGATATATATGGGGCAGCAGC 58.512 52.381 0.00 0.00 41.10 5.25
1737 1755 2.158914 TGCGATATATATGGGGCAGCAG 60.159 50.000 0.00 0.00 0.00 4.24
1738 1756 1.836802 TGCGATATATATGGGGCAGCA 59.163 47.619 0.00 0.16 0.00 4.41
1739 1757 2.620251 TGCGATATATATGGGGCAGC 57.380 50.000 0.00 0.00 0.00 5.25
1740 1758 4.077300 ACATGCGATATATATGGGGCAG 57.923 45.455 14.43 10.54 33.48 4.85
1741 1759 4.898861 TCTACATGCGATATATATGGGGCA 59.101 41.667 12.49 12.49 34.60 5.36
1742 1760 5.011125 AGTCTACATGCGATATATATGGGGC 59.989 44.000 0.00 1.90 0.00 5.80
1743 1761 6.568653 CGAGTCTACATGCGATATATATGGGG 60.569 46.154 0.00 0.00 0.00 4.96
1744 1762 6.374578 CGAGTCTACATGCGATATATATGGG 58.625 44.000 0.00 0.00 0.00 4.00
1745 1763 5.853810 GCGAGTCTACATGCGATATATATGG 59.146 44.000 0.00 0.00 0.00 2.74
1746 1764 6.430451 TGCGAGTCTACATGCGATATATATG 58.570 40.000 0.00 0.00 0.00 1.78
1747 1765 6.619801 TGCGAGTCTACATGCGATATATAT 57.380 37.500 0.00 0.00 0.00 0.86
1748 1766 6.038271 ACATGCGAGTCTACATGCGATATATA 59.962 38.462 18.05 0.00 46.08 0.86
1749 1767 4.965119 TGCGAGTCTACATGCGATATAT 57.035 40.909 0.00 0.00 0.00 0.86
1750 1768 4.156008 ACATGCGAGTCTACATGCGATATA 59.844 41.667 18.05 0.00 46.08 0.86
1751 1769 3.057245 ACATGCGAGTCTACATGCGATAT 60.057 43.478 18.05 1.75 46.08 1.63
1752 1770 2.293399 ACATGCGAGTCTACATGCGATA 59.707 45.455 18.05 0.00 46.08 2.92
1753 1771 1.067669 ACATGCGAGTCTACATGCGAT 59.932 47.619 18.05 2.31 46.08 4.58
1754 1772 0.455815 ACATGCGAGTCTACATGCGA 59.544 50.000 18.05 0.00 46.08 5.10
1755 1773 0.848942 GACATGCGAGTCTACATGCG 59.151 55.000 18.05 0.00 46.08 4.73
1756 1774 1.857217 CTGACATGCGAGTCTACATGC 59.143 52.381 18.05 13.03 46.08 4.06
1758 1776 2.360483 CTCCTGACATGCGAGTCTACAT 59.640 50.000 9.38 0.00 39.27 2.29
1759 1777 1.745653 CTCCTGACATGCGAGTCTACA 59.254 52.381 9.38 0.00 39.27 2.74
1760 1778 1.066303 CCTCCTGACATGCGAGTCTAC 59.934 57.143 9.38 0.00 39.27 2.59
1761 1779 1.341089 ACCTCCTGACATGCGAGTCTA 60.341 52.381 9.38 0.00 39.27 2.59
1762 1780 0.613292 ACCTCCTGACATGCGAGTCT 60.613 55.000 9.38 0.00 39.27 3.24
1763 1781 0.459237 CACCTCCTGACATGCGAGTC 60.459 60.000 0.00 1.70 38.99 3.36
1764 1782 0.900182 TCACCTCCTGACATGCGAGT 60.900 55.000 0.00 0.00 0.00 4.18
1765 1783 0.463204 ATCACCTCCTGACATGCGAG 59.537 55.000 0.00 0.00 0.00 5.03
1766 1784 0.176449 CATCACCTCCTGACATGCGA 59.824 55.000 0.00 0.00 0.00 5.10
1767 1785 1.434622 GCATCACCTCCTGACATGCG 61.435 60.000 0.00 0.00 27.78 4.73
1768 1786 1.099879 GGCATCACCTCCTGACATGC 61.100 60.000 0.00 0.00 35.08 4.06
1769 1787 0.465097 GGGCATCACCTCCTGACATG 60.465 60.000 0.00 0.00 39.10 3.21
1770 1788 1.639635 GGGGCATCACCTCCTGACAT 61.640 60.000 0.00 0.00 39.10 3.06
1771 1789 2.300967 GGGGCATCACCTCCTGACA 61.301 63.158 0.00 0.00 39.10 3.58
1772 1790 2.592308 GGGGCATCACCTCCTGAC 59.408 66.667 0.00 0.00 39.10 3.51
1773 1791 3.083349 CGGGGCATCACCTCCTGA 61.083 66.667 0.00 0.00 34.02 3.86
1774 1792 4.864334 GCGGGGCATCACCTCCTG 62.864 72.222 0.00 0.00 34.02 3.86
1776 1794 3.721370 ATTGCGGGGCATCACCTCC 62.721 63.158 0.00 0.00 38.76 4.30
1777 1795 2.124151 ATTGCGGGGCATCACCTC 60.124 61.111 0.00 0.00 38.76 3.85
1778 1796 2.440796 CATTGCGGGGCATCACCT 60.441 61.111 0.00 0.00 38.76 4.00
1779 1797 2.755469 ACATTGCGGGGCATCACC 60.755 61.111 0.00 0.00 38.76 4.02
1780 1798 2.270297 GACACATTGCGGGGCATCAC 62.270 60.000 0.00 0.00 38.76 3.06
1781 1799 2.035469 ACACATTGCGGGGCATCA 59.965 55.556 0.00 0.00 38.76 3.07
1782 1800 1.996786 CTGACACATTGCGGGGCATC 61.997 60.000 0.00 0.00 38.76 3.91
1783 1801 2.035469 TGACACATTGCGGGGCAT 59.965 55.556 0.00 0.00 38.76 4.40
1784 1802 2.482796 ATCTGACACATTGCGGGGCA 62.483 55.000 0.00 0.00 36.47 5.36
1785 1803 1.315257 AATCTGACACATTGCGGGGC 61.315 55.000 0.00 0.00 0.00 5.80
1786 1804 0.734889 GAATCTGACACATTGCGGGG 59.265 55.000 0.00 0.00 0.00 5.73
1787 1805 1.742761 AGAATCTGACACATTGCGGG 58.257 50.000 0.00 0.00 0.00 6.13
1788 1806 3.837213 AAAGAATCTGACACATTGCGG 57.163 42.857 0.00 0.00 0.00 5.69
1807 1825 0.527385 GCACTCGCAACCTGCAAAAA 60.527 50.000 0.00 0.00 45.36 1.94
1808 1826 1.065600 GCACTCGCAACCTGCAAAA 59.934 52.632 0.00 0.00 45.36 2.44
1809 1827 1.383456 AAGCACTCGCAACCTGCAAA 61.383 50.000 0.00 0.00 45.36 3.68
1810 1828 1.785041 GAAGCACTCGCAACCTGCAA 61.785 55.000 0.00 0.00 45.36 4.08
1811 1829 2.203195 AAGCACTCGCAACCTGCA 60.203 55.556 0.00 0.00 45.36 4.41
1812 1830 2.253758 TGAAGCACTCGCAACCTGC 61.254 57.895 0.00 0.00 42.27 4.85
1813 1831 1.571460 GTGAAGCACTCGCAACCTG 59.429 57.895 0.00 0.00 42.27 4.00
1814 1832 1.598130 GGTGAAGCACTCGCAACCT 60.598 57.895 0.00 0.00 42.27 3.50
1815 1833 2.617274 GGGTGAAGCACTCGCAACC 61.617 63.158 0.00 0.00 42.27 3.77
1816 1834 2.946762 GGGTGAAGCACTCGCAAC 59.053 61.111 0.00 0.00 42.27 4.17
1821 1839 0.383949 TTTTTGCGGGTGAAGCACTC 59.616 50.000 0.00 0.00 45.10 3.51
1822 1840 0.102300 GTTTTTGCGGGTGAAGCACT 59.898 50.000 0.00 0.00 45.10 4.40
1823 1841 0.179124 TGTTTTTGCGGGTGAAGCAC 60.179 50.000 0.00 0.00 45.10 4.40
1824 1842 0.749649 ATGTTTTTGCGGGTGAAGCA 59.250 45.000 0.00 0.00 43.59 3.91
1825 1843 1.864565 AATGTTTTTGCGGGTGAAGC 58.135 45.000 0.00 0.00 0.00 3.86
1826 1844 3.733727 GTGTAATGTTTTTGCGGGTGAAG 59.266 43.478 0.00 0.00 0.00 3.02
1827 1845 3.381908 AGTGTAATGTTTTTGCGGGTGAA 59.618 39.130 0.00 0.00 0.00 3.18
1828 1846 2.952978 AGTGTAATGTTTTTGCGGGTGA 59.047 40.909 0.00 0.00 0.00 4.02
1829 1847 3.363341 AGTGTAATGTTTTTGCGGGTG 57.637 42.857 0.00 0.00 0.00 4.61
1830 1848 3.131400 ACAAGTGTAATGTTTTTGCGGGT 59.869 39.130 0.00 0.00 0.00 5.28
1831 1849 3.712187 ACAAGTGTAATGTTTTTGCGGG 58.288 40.909 0.00 0.00 0.00 6.13
1832 1850 4.026145 CCAACAAGTGTAATGTTTTTGCGG 60.026 41.667 0.00 0.00 38.90 5.69
1833 1851 4.564769 ACCAACAAGTGTAATGTTTTTGCG 59.435 37.500 0.00 0.00 38.90 4.85
1834 1852 6.754675 AGTACCAACAAGTGTAATGTTTTTGC 59.245 34.615 0.00 0.00 38.90 3.68
1835 1853 8.696410 AAGTACCAACAAGTGTAATGTTTTTG 57.304 30.769 0.00 0.00 38.90 2.44
1836 1854 9.145865 CAAAGTACCAACAAGTGTAATGTTTTT 57.854 29.630 0.00 0.00 38.90 1.94
1837 1855 8.308207 ACAAAGTACCAACAAGTGTAATGTTTT 58.692 29.630 0.00 0.00 38.90 2.43
1838 1856 7.757624 CACAAAGTACCAACAAGTGTAATGTTT 59.242 33.333 0.00 0.00 38.90 2.83
1839 1857 7.094118 ACACAAAGTACCAACAAGTGTAATGTT 60.094 33.333 0.00 0.00 41.50 2.71
1840 1858 6.376018 ACACAAAGTACCAACAAGTGTAATGT 59.624 34.615 0.00 0.00 36.21 2.71
1841 1859 6.791303 ACACAAAGTACCAACAAGTGTAATG 58.209 36.000 0.00 0.00 36.21 1.90
1842 1860 6.238266 CGACACAAAGTACCAACAAGTGTAAT 60.238 38.462 0.00 0.00 37.30 1.89
1843 1861 5.063691 CGACACAAAGTACCAACAAGTGTAA 59.936 40.000 0.00 0.00 37.30 2.41
1844 1862 4.567558 CGACACAAAGTACCAACAAGTGTA 59.432 41.667 0.00 0.00 37.30 2.90
1845 1863 3.372822 CGACACAAAGTACCAACAAGTGT 59.627 43.478 0.00 0.00 38.77 3.55
1846 1864 3.372822 ACGACACAAAGTACCAACAAGTG 59.627 43.478 0.00 0.00 33.09 3.16
1847 1865 3.372822 CACGACACAAAGTACCAACAAGT 59.627 43.478 0.00 0.00 0.00 3.16
1848 1866 3.787476 GCACGACACAAAGTACCAACAAG 60.787 47.826 0.00 0.00 0.00 3.16
1849 1867 2.096174 GCACGACACAAAGTACCAACAA 59.904 45.455 0.00 0.00 0.00 2.83
1850 1868 1.666700 GCACGACACAAAGTACCAACA 59.333 47.619 0.00 0.00 0.00 3.33
1851 1869 1.666700 TGCACGACACAAAGTACCAAC 59.333 47.619 0.00 0.00 0.00 3.77
1852 1870 2.025589 TGCACGACACAAAGTACCAA 57.974 45.000 0.00 0.00 0.00 3.67
1853 1871 2.248280 ATGCACGACACAAAGTACCA 57.752 45.000 0.00 0.00 0.00 3.25
1854 1872 2.671396 CCTATGCACGACACAAAGTACC 59.329 50.000 0.00 0.00 0.00 3.34
1855 1873 3.122948 CACCTATGCACGACACAAAGTAC 59.877 47.826 0.00 0.00 0.00 2.73
1856 1874 3.322369 CACCTATGCACGACACAAAGTA 58.678 45.455 0.00 0.00 0.00 2.24
1857 1875 2.143122 CACCTATGCACGACACAAAGT 58.857 47.619 0.00 0.00 0.00 2.66
1858 1876 2.880822 CACCTATGCACGACACAAAG 57.119 50.000 0.00 0.00 0.00 2.77
1870 1888 3.070734 AGCACCTCATCTAAGCACCTATG 59.929 47.826 0.00 0.00 0.00 2.23
1871 1889 3.312890 AGCACCTCATCTAAGCACCTAT 58.687 45.455 0.00 0.00 0.00 2.57
1872 1890 2.752030 AGCACCTCATCTAAGCACCTA 58.248 47.619 0.00 0.00 0.00 3.08
1873 1891 1.577736 AGCACCTCATCTAAGCACCT 58.422 50.000 0.00 0.00 0.00 4.00
1874 1892 3.462021 CTTAGCACCTCATCTAAGCACC 58.538 50.000 0.00 0.00 36.48 5.01
1889 1907 7.429633 TGCTAAACTTTTTAATGTGCTTAGCA 58.570 30.769 1.39 1.39 44.53 3.49
1890 1908 7.867445 TGCTAAACTTTTTAATGTGCTTAGC 57.133 32.000 0.00 0.00 40.11 3.09
1891 1909 9.463443 AGTTGCTAAACTTTTTAATGTGCTTAG 57.537 29.630 0.00 0.00 44.47 2.18
1893 1911 9.810545 TTAGTTGCTAAACTTTTTAATGTGCTT 57.189 25.926 0.00 0.00 44.47 3.91
1894 1912 9.981114 ATTAGTTGCTAAACTTTTTAATGTGCT 57.019 25.926 0.00 0.00 44.47 4.40
1902 1920 9.646427 TTGTGAACATTAGTTGCTAAACTTTTT 57.354 25.926 0.00 0.00 44.47 1.94
1903 1921 9.816354 ATTGTGAACATTAGTTGCTAAACTTTT 57.184 25.926 0.00 0.00 44.47 2.27
1904 1922 9.248291 CATTGTGAACATTAGTTGCTAAACTTT 57.752 29.630 0.00 0.00 44.47 2.66
1905 1923 7.382218 GCATTGTGAACATTAGTTGCTAAACTT 59.618 33.333 0.00 0.00 44.47 2.66
1907 1925 6.640499 TGCATTGTGAACATTAGTTGCTAAAC 59.360 34.615 0.00 0.00 38.30 2.01
1908 1926 6.640499 GTGCATTGTGAACATTAGTTGCTAAA 59.360 34.615 0.00 0.00 38.30 1.85
1909 1927 6.016360 AGTGCATTGTGAACATTAGTTGCTAA 60.016 34.615 0.00 0.00 38.30 3.09
1910 1928 5.473162 AGTGCATTGTGAACATTAGTTGCTA 59.527 36.000 0.00 0.00 38.30 3.49
1911 1929 4.279169 AGTGCATTGTGAACATTAGTTGCT 59.721 37.500 0.00 0.00 38.30 3.91
1912 1930 4.549458 AGTGCATTGTGAACATTAGTTGC 58.451 39.130 0.00 0.00 38.30 4.17
1913 1931 7.132694 TCTAGTGCATTGTGAACATTAGTTG 57.867 36.000 0.00 0.00 38.30 3.16
1914 1932 7.228507 TGTTCTAGTGCATTGTGAACATTAGTT 59.771 33.333 20.25 0.00 41.02 2.24
1915 1933 6.710295 TGTTCTAGTGCATTGTGAACATTAGT 59.290 34.615 20.25 0.00 41.02 2.24
1916 1934 7.132694 TGTTCTAGTGCATTGTGAACATTAG 57.867 36.000 20.25 0.00 41.02 1.73
1920 1938 4.821260 ACATGTTCTAGTGCATTGTGAACA 59.179 37.500 23.65 23.65 46.82 3.18
1921 1939 5.362556 ACATGTTCTAGTGCATTGTGAAC 57.637 39.130 16.95 16.95 37.92 3.18
1922 1940 5.643348 CCTACATGTTCTAGTGCATTGTGAA 59.357 40.000 2.30 0.00 0.00 3.18
1923 1941 5.178061 CCTACATGTTCTAGTGCATTGTGA 58.822 41.667 2.30 0.00 0.00 3.58
1924 1942 4.201851 GCCTACATGTTCTAGTGCATTGTG 60.202 45.833 2.30 0.00 0.00 3.33
1925 1943 3.941483 GCCTACATGTTCTAGTGCATTGT 59.059 43.478 2.30 1.06 0.00 2.71
1926 1944 3.940852 TGCCTACATGTTCTAGTGCATTG 59.059 43.478 2.30 0.00 0.00 2.82
1927 1945 4.220693 TGCCTACATGTTCTAGTGCATT 57.779 40.909 2.30 0.00 0.00 3.56
1928 1946 3.912496 TGCCTACATGTTCTAGTGCAT 57.088 42.857 2.30 0.00 0.00 3.96
1929 1947 3.912496 ATGCCTACATGTTCTAGTGCA 57.088 42.857 2.30 8.05 34.35 4.57
1947 1965 4.764336 CGGGTGCAGCAACGCATG 62.764 66.667 19.06 0.00 45.26 4.06
1952 1970 1.805428 AAATGGACGGGTGCAGCAAC 61.805 55.000 19.06 0.03 33.50 4.17
1953 1971 1.112315 AAAATGGACGGGTGCAGCAA 61.112 50.000 19.06 0.00 33.50 3.91
1954 1972 1.112315 AAAAATGGACGGGTGCAGCA 61.112 50.000 19.06 0.00 33.50 4.41
1955 1973 0.667184 CAAAAATGGACGGGTGCAGC 60.667 55.000 7.55 7.55 33.50 5.25
1956 1974 0.038343 CCAAAAATGGACGGGTGCAG 60.038 55.000 0.00 0.00 33.50 4.41
1957 1975 0.468214 TCCAAAAATGGACGGGTGCA 60.468 50.000 0.00 0.00 32.09 4.57
1958 1976 0.676736 TTCCAAAAATGGACGGGTGC 59.323 50.000 0.00 0.00 37.76 5.01
1959 1977 1.000394 GGTTCCAAAAATGGACGGGTG 60.000 52.381 0.00 0.00 37.76 4.61
1960 1978 1.334160 GGTTCCAAAAATGGACGGGT 58.666 50.000 0.00 0.00 37.76 5.28
1961 1979 0.242555 CGGTTCCAAAAATGGACGGG 59.757 55.000 0.00 0.00 37.76 5.28
1962 1980 1.240256 TCGGTTCCAAAAATGGACGG 58.760 50.000 0.00 0.00 37.76 4.79
1963 1981 3.057876 TGATTCGGTTCCAAAAATGGACG 60.058 43.478 0.00 0.00 37.76 4.79
1964 1982 4.513198 TGATTCGGTTCCAAAAATGGAC 57.487 40.909 0.00 0.00 37.76 4.02
1965 1983 8.526667 TTATATGATTCGGTTCCAAAAATGGA 57.473 30.769 0.00 0.00 35.93 3.41
1966 1984 9.762933 AATTATATGATTCGGTTCCAAAAATGG 57.237 29.630 0.00 0.00 0.00 3.16
1971 1989 9.964303 CAATCAATTATATGATTCGGTTCCAAA 57.036 29.630 0.00 0.00 45.77 3.28
1972 1990 9.348476 TCAATCAATTATATGATTCGGTTCCAA 57.652 29.630 0.00 0.00 45.77 3.53
1973 1991 8.916628 TCAATCAATTATATGATTCGGTTCCA 57.083 30.769 0.00 0.00 45.77 3.53
1990 2008 9.491675 TGCAACAATCTACAATTTTCAATCAAT 57.508 25.926 0.00 0.00 0.00 2.57
1991 2009 8.883954 TGCAACAATCTACAATTTTCAATCAA 57.116 26.923 0.00 0.00 0.00 2.57
1992 2010 8.763356 GTTGCAACAATCTACAATTTTCAATCA 58.237 29.630 24.52 0.00 0.00 2.57
1993 2011 8.763356 TGTTGCAACAATCTACAATTTTCAATC 58.237 29.630 29.36 0.00 35.67 2.67
1994 2012 8.550376 GTGTTGCAACAATCTACAATTTTCAAT 58.450 29.630 32.61 0.00 41.21 2.57
1995 2013 7.547019 TGTGTTGCAACAATCTACAATTTTCAA 59.453 29.630 32.61 1.88 41.21 2.69
1996 2014 7.038048 TGTGTTGCAACAATCTACAATTTTCA 58.962 30.769 32.61 18.31 41.21 2.69
1997 2015 7.462109 TGTGTTGCAACAATCTACAATTTTC 57.538 32.000 32.61 16.01 41.21 2.29
1998 2016 7.710044 TGATGTGTTGCAACAATCTACAATTTT 59.290 29.630 32.61 11.56 41.21 1.82
1999 2017 7.208777 TGATGTGTTGCAACAATCTACAATTT 58.791 30.769 32.61 11.90 41.21 1.82
2000 2018 6.747125 TGATGTGTTGCAACAATCTACAATT 58.253 32.000 32.61 12.57 41.21 2.32
2001 2019 6.330004 TGATGTGTTGCAACAATCTACAAT 57.670 33.333 32.61 16.78 41.21 2.71
2002 2020 5.764487 TGATGTGTTGCAACAATCTACAA 57.236 34.783 32.61 17.10 41.21 2.41
2003 2021 5.963176 ATGATGTGTTGCAACAATCTACA 57.037 34.783 32.61 24.81 41.21 2.74
2004 2022 8.741101 TTTTATGATGTGTTGCAACAATCTAC 57.259 30.769 32.61 20.18 41.21 2.59
2005 2023 9.926158 AATTTTATGATGTGTTGCAACAATCTA 57.074 25.926 32.61 22.71 41.21 1.98
2006 2024 8.836268 AATTTTATGATGTGTTGCAACAATCT 57.164 26.923 32.61 23.06 41.21 2.40
2007 2025 8.710551 TGAATTTTATGATGTGTTGCAACAATC 58.289 29.630 32.61 30.14 41.21 2.67
2008 2026 8.497554 GTGAATTTTATGATGTGTTGCAACAAT 58.502 29.630 32.61 25.25 41.21 2.71
2009 2027 7.493645 TGTGAATTTTATGATGTGTTGCAACAA 59.506 29.630 32.61 22.09 41.21 2.83
2010 2028 6.982724 TGTGAATTTTATGATGTGTTGCAACA 59.017 30.769 27.96 27.96 36.38 3.33
2011 2029 7.405469 TGTGAATTTTATGATGTGTTGCAAC 57.595 32.000 22.83 22.83 0.00 4.17
2012 2030 8.496751 CAATGTGAATTTTATGATGTGTTGCAA 58.503 29.630 0.00 0.00 0.00 4.08
2013 2031 7.656542 ACAATGTGAATTTTATGATGTGTTGCA 59.343 29.630 0.00 0.00 0.00 4.08
2014 2032 8.020861 ACAATGTGAATTTTATGATGTGTTGC 57.979 30.769 0.00 0.00 0.00 4.17
2016 2034 9.761504 TGAACAATGTGAATTTTATGATGTGTT 57.238 25.926 0.00 0.00 0.00 3.32
2017 2035 9.932207 ATGAACAATGTGAATTTTATGATGTGT 57.068 25.926 0.00 0.00 0.00 3.72
2031 2049 9.949174 GCATACAATGTAATATGAACAATGTGA 57.051 29.630 16.76 6.76 40.32 3.58
2032 2050 9.733219 TGCATACAATGTAATATGAACAATGTG 57.267 29.630 16.76 9.07 40.32 3.21
2044 2062 8.888716 TCGTTTCTTACATGCATACAATGTAAT 58.111 29.630 9.61 0.00 39.24 1.89
2045 2063 8.257830 TCGTTTCTTACATGCATACAATGTAA 57.742 30.769 0.00 4.20 38.13 2.41
2046 2064 7.835634 TCGTTTCTTACATGCATACAATGTA 57.164 32.000 0.00 0.00 0.00 2.29
2047 2065 6.735678 TCGTTTCTTACATGCATACAATGT 57.264 33.333 0.00 0.00 0.00 2.71
2048 2066 8.365210 GTTTTCGTTTCTTACATGCATACAATG 58.635 33.333 0.00 0.00 0.00 2.82
2049 2067 7.540745 GGTTTTCGTTTCTTACATGCATACAAT 59.459 33.333 0.00 0.00 0.00 2.71
2050 2068 6.858993 GGTTTTCGTTTCTTACATGCATACAA 59.141 34.615 0.00 0.00 0.00 2.41
2051 2069 6.017026 TGGTTTTCGTTTCTTACATGCATACA 60.017 34.615 0.00 0.00 0.00 2.29
2052 2070 6.375377 TGGTTTTCGTTTCTTACATGCATAC 58.625 36.000 0.00 0.00 0.00 2.39
2053 2071 6.428465 TCTGGTTTTCGTTTCTTACATGCATA 59.572 34.615 0.00 0.00 0.00 3.14
2054 2072 5.240623 TCTGGTTTTCGTTTCTTACATGCAT 59.759 36.000 0.00 0.00 0.00 3.96
2055 2073 4.576873 TCTGGTTTTCGTTTCTTACATGCA 59.423 37.500 0.00 0.00 0.00 3.96
2056 2074 4.909880 GTCTGGTTTTCGTTTCTTACATGC 59.090 41.667 0.00 0.00 0.00 4.06
2057 2075 5.907391 GTGTCTGGTTTTCGTTTCTTACATG 59.093 40.000 0.00 0.00 0.00 3.21
2058 2076 5.587043 TGTGTCTGGTTTTCGTTTCTTACAT 59.413 36.000 0.00 0.00 0.00 2.29
2059 2077 4.936411 TGTGTCTGGTTTTCGTTTCTTACA 59.064 37.500 0.00 0.00 0.00 2.41
2060 2078 5.473796 TGTGTCTGGTTTTCGTTTCTTAC 57.526 39.130 0.00 0.00 0.00 2.34
2061 2079 6.497785 TTTGTGTCTGGTTTTCGTTTCTTA 57.502 33.333 0.00 0.00 0.00 2.10
2062 2080 5.379732 TTTGTGTCTGGTTTTCGTTTCTT 57.620 34.783 0.00 0.00 0.00 2.52
2063 2081 5.379732 TTTTGTGTCTGGTTTTCGTTTCT 57.620 34.783 0.00 0.00 0.00 2.52
2064 2082 6.970613 ACTATTTTGTGTCTGGTTTTCGTTTC 59.029 34.615 0.00 0.00 0.00 2.78
2065 2083 6.859017 ACTATTTTGTGTCTGGTTTTCGTTT 58.141 32.000 0.00 0.00 0.00 3.60
2066 2084 6.445357 ACTATTTTGTGTCTGGTTTTCGTT 57.555 33.333 0.00 0.00 0.00 3.85
2067 2085 6.539464 TGTACTATTTTGTGTCTGGTTTTCGT 59.461 34.615 0.00 0.00 0.00 3.85
2068 2086 6.950545 TGTACTATTTTGTGTCTGGTTTTCG 58.049 36.000 0.00 0.00 0.00 3.46
2069 2087 9.821662 GTATGTACTATTTTGTGTCTGGTTTTC 57.178 33.333 0.00 0.00 0.00 2.29
2070 2088 9.344772 TGTATGTACTATTTTGTGTCTGGTTTT 57.655 29.630 0.00 0.00 0.00 2.43
2071 2089 8.911918 TGTATGTACTATTTTGTGTCTGGTTT 57.088 30.769 0.00 0.00 0.00 3.27
2072 2090 8.911918 TTGTATGTACTATTTTGTGTCTGGTT 57.088 30.769 0.00 0.00 0.00 3.67
2073 2091 7.119262 GCTTGTATGTACTATTTTGTGTCTGGT 59.881 37.037 0.00 0.00 0.00 4.00
2074 2092 7.119116 TGCTTGTATGTACTATTTTGTGTCTGG 59.881 37.037 0.00 0.00 0.00 3.86
2075 2093 8.028540 TGCTTGTATGTACTATTTTGTGTCTG 57.971 34.615 0.00 0.00 0.00 3.51
2076 2094 8.094548 TCTGCTTGTATGTACTATTTTGTGTCT 58.905 33.333 0.00 0.00 0.00 3.41
2077 2095 8.169268 GTCTGCTTGTATGTACTATTTTGTGTC 58.831 37.037 0.00 0.00 0.00 3.67
2078 2096 7.659799 TGTCTGCTTGTATGTACTATTTTGTGT 59.340 33.333 0.00 0.00 0.00 3.72
2079 2097 8.028540 TGTCTGCTTGTATGTACTATTTTGTG 57.971 34.615 0.00 0.00 0.00 3.33
2080 2098 7.148407 GCTGTCTGCTTGTATGTACTATTTTGT 60.148 37.037 0.00 0.00 38.95 2.83
2081 2099 7.182761 GCTGTCTGCTTGTATGTACTATTTTG 58.817 38.462 0.00 0.00 38.95 2.44
2082 2100 7.308782 GCTGTCTGCTTGTATGTACTATTTT 57.691 36.000 0.00 0.00 38.95 1.82
2083 2101 6.910536 GCTGTCTGCTTGTATGTACTATTT 57.089 37.500 0.00 0.00 38.95 1.40
2098 2116 7.065803 TCCAAACTACATTAATTAGCTGTCTGC 59.934 37.037 0.00 0.00 43.29 4.26
2099 2117 8.391106 GTCCAAACTACATTAATTAGCTGTCTG 58.609 37.037 0.00 4.74 0.00 3.51
2100 2118 8.100791 TGTCCAAACTACATTAATTAGCTGTCT 58.899 33.333 0.00 0.00 0.00 3.41
2101 2119 8.263940 TGTCCAAACTACATTAATTAGCTGTC 57.736 34.615 0.00 0.00 0.00 3.51
2102 2120 8.807948 ATGTCCAAACTACATTAATTAGCTGT 57.192 30.769 0.00 7.62 33.83 4.40
2129 2147 9.332301 CGCGTTCCAAAAAGTTAAATTCTTATA 57.668 29.630 0.00 0.00 0.00 0.98
2130 2148 8.077386 TCGCGTTCCAAAAAGTTAAATTCTTAT 58.923 29.630 5.77 0.00 0.00 1.73
2131 2149 7.416022 TCGCGTTCCAAAAAGTTAAATTCTTA 58.584 30.769 5.77 0.00 0.00 2.10
2132 2150 6.267070 TCGCGTTCCAAAAAGTTAAATTCTT 58.733 32.000 5.77 0.00 0.00 2.52
2133 2151 5.823353 TCGCGTTCCAAAAAGTTAAATTCT 58.177 33.333 5.77 0.00 0.00 2.40
2134 2152 6.341732 GTTCGCGTTCCAAAAAGTTAAATTC 58.658 36.000 5.77 0.00 0.00 2.17
2135 2153 5.052238 CGTTCGCGTTCCAAAAAGTTAAATT 60.052 36.000 5.77 0.00 35.57 1.82
2136 2154 4.438471 CGTTCGCGTTCCAAAAAGTTAAAT 59.562 37.500 5.77 0.00 35.57 1.40
2137 2155 3.784994 CGTTCGCGTTCCAAAAAGTTAAA 59.215 39.130 5.77 0.00 35.57 1.52
2138 2156 3.063180 TCGTTCGCGTTCCAAAAAGTTAA 59.937 39.130 5.77 0.00 42.11 2.01
2139 2157 2.606725 TCGTTCGCGTTCCAAAAAGTTA 59.393 40.909 5.77 0.00 42.11 2.24
2140 2158 1.397692 TCGTTCGCGTTCCAAAAAGTT 59.602 42.857 5.77 0.00 42.11 2.66
2141 2159 1.008329 TCGTTCGCGTTCCAAAAAGT 58.992 45.000 5.77 0.00 42.11 2.66
2142 2160 2.093972 TTCGTTCGCGTTCCAAAAAG 57.906 45.000 5.77 0.00 42.11 2.27
2143 2161 2.759538 ATTCGTTCGCGTTCCAAAAA 57.240 40.000 5.77 0.00 42.11 1.94
2144 2162 2.759538 AATTCGTTCGCGTTCCAAAA 57.240 40.000 5.77 0.00 42.11 2.44
2145 2163 2.801679 AGTAATTCGTTCGCGTTCCAAA 59.198 40.909 5.77 0.00 42.11 3.28
2146 2164 2.156117 CAGTAATTCGTTCGCGTTCCAA 59.844 45.455 5.77 0.00 42.11 3.53
2147 2165 1.722464 CAGTAATTCGTTCGCGTTCCA 59.278 47.619 5.77 0.00 42.11 3.53
2148 2166 1.526384 GCAGTAATTCGTTCGCGTTCC 60.526 52.381 5.77 0.00 42.11 3.62
2149 2167 1.125384 TGCAGTAATTCGTTCGCGTTC 59.875 47.619 5.77 0.00 42.11 3.95
2150 2168 1.141645 TGCAGTAATTCGTTCGCGTT 58.858 45.000 5.77 0.00 42.11 4.84
2151 2169 1.060553 CATGCAGTAATTCGTTCGCGT 59.939 47.619 5.77 0.00 42.11 6.01
2152 2170 1.592110 CCATGCAGTAATTCGTTCGCG 60.592 52.381 0.00 0.00 42.98 5.87
2153 2171 1.396996 ACCATGCAGTAATTCGTTCGC 59.603 47.619 0.00 0.00 0.00 4.70
2154 2172 2.787723 GCACCATGCAGTAATTCGTTCG 60.788 50.000 0.00 0.00 44.26 3.95
2155 2173 2.785679 GCACCATGCAGTAATTCGTTC 58.214 47.619 0.00 0.00 44.26 3.95
2156 2174 2.919666 GCACCATGCAGTAATTCGTT 57.080 45.000 0.00 0.00 44.26 3.85
2167 2185 2.609350 CAATTACAAGGTGCACCATGC 58.391 47.619 34.77 11.67 45.29 4.06
2168 2186 2.029200 TGCAATTACAAGGTGCACCATG 60.029 45.455 36.39 34.91 43.09 3.66
2169 2187 2.246469 TGCAATTACAAGGTGCACCAT 58.754 42.857 36.39 24.14 43.09 3.55
2170 2188 1.697284 TGCAATTACAAGGTGCACCA 58.303 45.000 36.39 17.14 43.09 4.17
2173 2191 2.889678 TCATGTGCAATTACAAGGTGCA 59.110 40.909 0.00 0.00 45.62 4.57
2174 2192 3.574284 TCATGTGCAATTACAAGGTGC 57.426 42.857 0.00 0.00 38.78 5.01
2175 2193 5.712004 TCAATCATGTGCAATTACAAGGTG 58.288 37.500 0.00 0.00 33.69 4.00
2176 2194 5.981088 TCAATCATGTGCAATTACAAGGT 57.019 34.783 0.00 0.00 33.69 3.50
2177 2195 7.360269 GGTTTTCAATCATGTGCAATTACAAGG 60.360 37.037 0.00 0.00 33.69 3.61
2178 2196 7.171167 TGGTTTTCAATCATGTGCAATTACAAG 59.829 33.333 0.00 0.00 33.69 3.16
2179 2197 6.988580 TGGTTTTCAATCATGTGCAATTACAA 59.011 30.769 0.00 0.00 33.69 2.41
2180 2198 6.519382 TGGTTTTCAATCATGTGCAATTACA 58.481 32.000 0.00 0.00 34.63 2.41
2181 2199 7.418840 TTGGTTTTCAATCATGTGCAATTAC 57.581 32.000 0.00 0.00 0.00 1.89
2182 2200 8.442632 TTTTGGTTTTCAATCATGTGCAATTA 57.557 26.923 0.00 0.00 34.98 1.40
2183 2201 6.939132 TTTGGTTTTCAATCATGTGCAATT 57.061 29.167 0.00 0.00 34.98 2.32
2184 2202 6.543100 ACTTTTGGTTTTCAATCATGTGCAAT 59.457 30.769 0.00 0.00 34.98 3.56
2185 2203 5.879223 ACTTTTGGTTTTCAATCATGTGCAA 59.121 32.000 0.00 0.00 34.98 4.08
2186 2204 5.426504 ACTTTTGGTTTTCAATCATGTGCA 58.573 33.333 0.00 0.00 34.98 4.57
2187 2205 5.523188 TGACTTTTGGTTTTCAATCATGTGC 59.477 36.000 0.00 0.00 34.98 4.57
2188 2206 6.757947 ACTGACTTTTGGTTTTCAATCATGTG 59.242 34.615 0.00 0.00 34.98 3.21
2189 2207 6.757947 CACTGACTTTTGGTTTTCAATCATGT 59.242 34.615 0.00 0.00 34.98 3.21
2190 2208 6.979817 TCACTGACTTTTGGTTTTCAATCATG 59.020 34.615 0.00 0.00 34.98 3.07
2191 2209 7.068593 TCTCACTGACTTTTGGTTTTCAATCAT 59.931 33.333 0.00 0.00 34.98 2.45
2192 2210 6.376864 TCTCACTGACTTTTGGTTTTCAATCA 59.623 34.615 0.00 0.00 34.98 2.57
2193 2211 6.795399 TCTCACTGACTTTTGGTTTTCAATC 58.205 36.000 0.00 0.00 34.98 2.67
2194 2212 6.773976 TCTCACTGACTTTTGGTTTTCAAT 57.226 33.333 0.00 0.00 34.98 2.57
2195 2213 6.432783 TCTTCTCACTGACTTTTGGTTTTCAA 59.567 34.615 0.00 0.00 0.00 2.69
2196 2214 5.943416 TCTTCTCACTGACTTTTGGTTTTCA 59.057 36.000 0.00 0.00 0.00 2.69
2197 2215 6.094186 ACTCTTCTCACTGACTTTTGGTTTTC 59.906 38.462 0.00 0.00 0.00 2.29
2198 2216 5.946377 ACTCTTCTCACTGACTTTTGGTTTT 59.054 36.000 0.00 0.00 0.00 2.43
2199 2217 5.501156 ACTCTTCTCACTGACTTTTGGTTT 58.499 37.500 0.00 0.00 0.00 3.27
2200 2218 5.104259 ACTCTTCTCACTGACTTTTGGTT 57.896 39.130 0.00 0.00 0.00 3.67
2201 2219 4.762289 ACTCTTCTCACTGACTTTTGGT 57.238 40.909 0.00 0.00 0.00 3.67
2202 2220 7.736447 ATAAACTCTTCTCACTGACTTTTGG 57.264 36.000 0.00 0.00 0.00 3.28
2232 2250 9.423061 GCATATCTGTTGAAAATACCAGTTTTT 57.577 29.630 0.00 0.00 31.80 1.94
2233 2251 8.034804 GGCATATCTGTTGAAAATACCAGTTTT 58.965 33.333 0.00 0.00 34.19 2.43
2234 2252 7.178274 TGGCATATCTGTTGAAAATACCAGTTT 59.822 33.333 0.00 0.00 0.00 2.66
2235 2253 6.663093 TGGCATATCTGTTGAAAATACCAGTT 59.337 34.615 0.00 0.00 0.00 3.16
2236 2254 6.186957 TGGCATATCTGTTGAAAATACCAGT 58.813 36.000 0.00 0.00 0.00 4.00
2237 2255 6.698008 TGGCATATCTGTTGAAAATACCAG 57.302 37.500 0.00 0.00 0.00 4.00
2238 2256 7.658525 ATTGGCATATCTGTTGAAAATACCA 57.341 32.000 0.00 0.00 0.00 3.25
2242 2260 9.550406 CCAATTATTGGCATATCTGTTGAAAAT 57.450 29.630 11.33 0.00 45.17 1.82
2243 2261 8.945481 CCAATTATTGGCATATCTGTTGAAAA 57.055 30.769 11.33 0.00 45.17 2.29
2273 2291 9.569122 GTGGCCCTTTGATCTTAACTATATTAA 57.431 33.333 0.00 0.00 0.00 1.40
2274 2292 8.161425 GGTGGCCCTTTGATCTTAACTATATTA 58.839 37.037 0.00 0.00 0.00 0.98
2275 2293 7.004691 GGTGGCCCTTTGATCTTAACTATATT 58.995 38.462 0.00 0.00 0.00 1.28
2276 2294 6.467339 GGGTGGCCCTTTGATCTTAACTATAT 60.467 42.308 0.00 0.00 41.34 0.86
2277 2295 5.163131 GGGTGGCCCTTTGATCTTAACTATA 60.163 44.000 0.00 0.00 41.34 1.31
2278 2296 4.386424 GGGTGGCCCTTTGATCTTAACTAT 60.386 45.833 0.00 0.00 41.34 2.12
2279 2297 3.053917 GGGTGGCCCTTTGATCTTAACTA 60.054 47.826 0.00 0.00 41.34 2.24
2280 2298 2.291605 GGGTGGCCCTTTGATCTTAACT 60.292 50.000 0.00 0.00 41.34 2.24
2281 2299 2.100197 GGGTGGCCCTTTGATCTTAAC 58.900 52.381 0.00 0.00 41.34 2.01
2282 2300 1.713647 TGGGTGGCCCTTTGATCTTAA 59.286 47.619 0.00 0.00 45.70 1.85
2283 2301 1.377690 TGGGTGGCCCTTTGATCTTA 58.622 50.000 0.00 0.00 45.70 2.10
2284 2302 0.712380 ATGGGTGGCCCTTTGATCTT 59.288 50.000 0.00 0.00 45.70 2.40
2285 2303 0.712380 AATGGGTGGCCCTTTGATCT 59.288 50.000 0.00 0.00 45.70 2.75
2286 2304 2.452600 TAATGGGTGGCCCTTTGATC 57.547 50.000 13.56 0.00 45.70 2.92
2287 2305 2.247111 TGATAATGGGTGGCCCTTTGAT 59.753 45.455 13.56 5.52 45.70 2.57
2288 2306 1.643286 TGATAATGGGTGGCCCTTTGA 59.357 47.619 13.56 1.81 45.70 2.69
2289 2307 2.157640 TGATAATGGGTGGCCCTTTG 57.842 50.000 13.56 0.00 45.70 2.77
2290 2308 3.467103 AGTATGATAATGGGTGGCCCTTT 59.533 43.478 0.00 8.00 45.70 3.11
2291 2309 3.063650 AGTATGATAATGGGTGGCCCTT 58.936 45.455 0.00 0.00 45.70 3.95
2292 2310 2.376518 CAGTATGATAATGGGTGGCCCT 59.623 50.000 0.00 0.00 41.74 5.19
2293 2311 2.108250 ACAGTATGATAATGGGTGGCCC 59.892 50.000 0.00 0.00 41.60 5.80
2294 2312 3.412386 GACAGTATGATAATGGGTGGCC 58.588 50.000 4.85 0.00 39.69 5.36
2295 2313 3.067106 CGACAGTATGATAATGGGTGGC 58.933 50.000 4.85 0.00 39.69 5.01
2296 2314 3.323691 TCCGACAGTATGATAATGGGTGG 59.676 47.826 4.85 3.43 39.69 4.61
2297 2315 4.600692 TCCGACAGTATGATAATGGGTG 57.399 45.455 4.85 0.00 39.69 4.61
2298 2316 6.183360 CGATATCCGACAGTATGATAATGGGT 60.183 42.308 4.85 0.00 41.26 4.51
2299 2317 6.209361 CGATATCCGACAGTATGATAATGGG 58.791 44.000 4.85 0.00 41.26 4.00
2300 2318 6.209361 CCGATATCCGACAGTATGATAATGG 58.791 44.000 4.85 0.00 38.65 3.16
2301 2319 6.183360 ACCCGATATCCGACAGTATGATAATG 60.183 42.308 0.00 0.00 38.65 1.90
2302 2320 5.892119 ACCCGATATCCGACAGTATGATAAT 59.108 40.000 0.00 0.00 38.65 1.28
2303 2321 5.258841 ACCCGATATCCGACAGTATGATAA 58.741 41.667 0.00 0.00 38.65 1.75
2304 2322 4.851843 ACCCGATATCCGACAGTATGATA 58.148 43.478 0.00 0.00 38.65 2.15
2305 2323 3.698289 ACCCGATATCCGACAGTATGAT 58.302 45.455 0.00 0.00 38.65 2.45
2306 2324 3.150458 ACCCGATATCCGACAGTATGA 57.850 47.619 0.00 0.00 38.65 2.15
2307 2325 3.367087 GGAACCCGATATCCGACAGTATG 60.367 52.174 0.00 0.00 41.76 2.39
2308 2326 2.824341 GGAACCCGATATCCGACAGTAT 59.176 50.000 0.00 0.00 41.76 2.12
2309 2327 2.233271 GGAACCCGATATCCGACAGTA 58.767 52.381 0.00 0.00 41.76 2.74
2310 2328 1.038280 GGAACCCGATATCCGACAGT 58.962 55.000 0.00 0.00 41.76 3.55
2311 2329 1.000163 CTGGAACCCGATATCCGACAG 60.000 57.143 0.00 0.00 41.76 3.51
2312 2330 1.037493 CTGGAACCCGATATCCGACA 58.963 55.000 0.00 0.00 41.76 4.35
2313 2331 0.319641 GCTGGAACCCGATATCCGAC 60.320 60.000 0.00 0.00 41.76 4.79
2314 2332 0.757561 TGCTGGAACCCGATATCCGA 60.758 55.000 0.00 0.00 41.76 4.55
2315 2333 0.105964 TTGCTGGAACCCGATATCCG 59.894 55.000 0.00 0.00 38.63 4.18
2316 2334 2.341846 TTTGCTGGAACCCGATATCC 57.658 50.000 0.00 0.00 36.21 2.59
2317 2335 2.357952 GGTTTTGCTGGAACCCGATATC 59.642 50.000 5.48 0.00 40.52 1.63
2318 2336 2.375146 GGTTTTGCTGGAACCCGATAT 58.625 47.619 5.48 0.00 40.52 1.63
2319 2337 1.828979 GGTTTTGCTGGAACCCGATA 58.171 50.000 5.48 0.00 40.52 2.92
2320 2338 2.653557 GGTTTTGCTGGAACCCGAT 58.346 52.632 5.48 0.00 40.52 4.18
2321 2339 4.167597 GGTTTTGCTGGAACCCGA 57.832 55.556 5.48 0.00 40.52 5.14
2324 2342 2.299013 CCTTAAGGGTTTTGCTGGAACC 59.701 50.000 14.25 7.62 44.62 3.62
2325 2343 3.660501 CCTTAAGGGTTTTGCTGGAAC 57.339 47.619 14.25 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.