Multiple sequence alignment - TraesCS1B01G120200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G120200 chr1B 100.000 3708 0 0 1 3708 142290195 142293902 0.000000e+00 6848.0
1 TraesCS1B01G120200 chr1B 94.553 257 10 4 640 896 668197129 668196877 9.650000e-106 394.0
2 TraesCS1B01G120200 chr1A 91.788 1437 70 21 1547 2980 85028222 85029613 0.000000e+00 1956.0
3 TraesCS1B01G120200 chr1A 93.610 579 33 2 924 1502 85027305 85027879 0.000000e+00 861.0
4 TraesCS1B01G120200 chr1A 89.599 548 54 2 18 563 306517457 306516911 0.000000e+00 693.0
5 TraesCS1B01G120200 chr1A 87.668 373 35 5 3342 3707 85030316 85030684 1.230000e-114 424.0
6 TraesCS1B01G120200 chr1A 91.630 227 17 2 3119 3344 85029842 85030067 2.780000e-81 313.0
7 TraesCS1B01G120200 chr1A 90.647 139 12 1 2979 3117 85029663 85029800 2.270000e-42 183.0
8 TraesCS1B01G120200 chr1A 90.000 90 5 1 1470 1555 85027969 85028058 3.030000e-21 113.0
9 TraesCS1B01G120200 chr1A 88.764 89 10 0 575 663 85008401 85008489 3.920000e-20 110.0
10 TraesCS1B01G120200 chr1D 93.601 1172 42 9 938 2106 89116149 89117290 0.000000e+00 1718.0
11 TraesCS1B01G120200 chr1D 87.586 435 21 13 3282 3708 89117374 89117783 1.210000e-129 473.0
12 TraesCS1B01G120200 chr1D 86.517 89 10 2 575 663 89069258 89069344 3.050000e-16 97.1
13 TraesCS1B01G120200 chr2B 87.027 555 66 5 8 559 430198316 430198867 4.070000e-174 621.0
14 TraesCS1B01G120200 chr2B 93.249 237 13 2 661 897 789542160 789541927 2.740000e-91 346.0
15 TraesCS1B01G120200 chr2B 78.141 398 71 12 1010 1393 16031724 16032119 4.790000e-59 239.0
16 TraesCS1B01G120200 chr2B 78.141 398 71 12 1013 1396 16050920 16050525 4.790000e-59 239.0
17 TraesCS1B01G120200 chr5D 86.429 560 67 7 6 561 14530158 14529604 4.100000e-169 604.0
18 TraesCS1B01G120200 chr5D 85.179 560 76 5 6 561 301631192 301630636 5.370000e-158 568.0
19 TraesCS1B01G120200 chr7D 86.096 561 70 6 6 562 422574969 422574413 6.850000e-167 597.0
20 TraesCS1B01G120200 chr4D 85.841 565 72 7 6 565 465441649 465442210 8.870000e-166 593.0
21 TraesCS1B01G120200 chr4D 92.437 238 14 4 664 900 261359154 261358920 1.650000e-88 337.0
22 TraesCS1B01G120200 chr4D 82.573 241 34 8 661 898 20530585 20530820 4.850000e-49 206.0
23 TraesCS1B01G120200 chr3B 85.816 564 75 4 5 564 477623140 477622578 8.870000e-166 593.0
24 TraesCS1B01G120200 chr6D 85.818 550 74 3 6 552 426044702 426045250 6.900000e-162 580.0
25 TraesCS1B01G120200 chr3A 85.179 560 75 5 6 561 735610110 735609555 5.370000e-158 568.0
26 TraesCS1B01G120200 chr3A 90.164 244 20 4 655 897 48446194 48446434 7.730000e-82 315.0
27 TraesCS1B01G120200 chr3A 90.826 218 17 3 681 897 48366787 48367002 4.690000e-74 289.0
28 TraesCS1B01G120200 chr7B 93.774 257 12 4 640 896 713142511 713142763 2.090000e-102 383.0
29 TraesCS1B01G120200 chr2D 93.264 193 10 3 707 898 391802128 391801938 7.840000e-72 281.0
30 TraesCS1B01G120200 chr5A 87.712 236 28 1 661 896 440975232 440974998 1.310000e-69 274.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G120200 chr1B 142290195 142293902 3707 False 6848.000000 6848 100.0000 1 3708 1 chr1B.!!$F1 3707
1 TraesCS1B01G120200 chr1A 306516911 306517457 546 True 693.000000 693 89.5990 18 563 1 chr1A.!!$R1 545
2 TraesCS1B01G120200 chr1A 85027305 85030684 3379 False 641.666667 1956 90.8905 924 3707 6 chr1A.!!$F2 2783
3 TraesCS1B01G120200 chr1D 89116149 89117783 1634 False 1095.500000 1718 90.5935 938 3708 2 chr1D.!!$F2 2770
4 TraesCS1B01G120200 chr2B 430198316 430198867 551 False 621.000000 621 87.0270 8 559 1 chr2B.!!$F2 551
5 TraesCS1B01G120200 chr5D 14529604 14530158 554 True 604.000000 604 86.4290 6 561 1 chr5D.!!$R1 555
6 TraesCS1B01G120200 chr5D 301630636 301631192 556 True 568.000000 568 85.1790 6 561 1 chr5D.!!$R2 555
7 TraesCS1B01G120200 chr7D 422574413 422574969 556 True 597.000000 597 86.0960 6 562 1 chr7D.!!$R1 556
8 TraesCS1B01G120200 chr4D 465441649 465442210 561 False 593.000000 593 85.8410 6 565 1 chr4D.!!$F2 559
9 TraesCS1B01G120200 chr3B 477622578 477623140 562 True 593.000000 593 85.8160 5 564 1 chr3B.!!$R1 559
10 TraesCS1B01G120200 chr6D 426044702 426045250 548 False 580.000000 580 85.8180 6 552 1 chr6D.!!$F1 546
11 TraesCS1B01G120200 chr3A 735609555 735610110 555 True 568.000000 568 85.1790 6 561 1 chr3A.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 765 0.034477 AATACTCCGGCCCACCTTTG 60.034 55.0 0.0 0.0 0.00 2.77 F
765 773 0.108396 GGCCCACCTTTGTGCAAAAT 59.892 50.0 0.0 0.0 41.35 1.82 F
2477 2792 0.108186 CCTGCGAGGCATGTACAAGA 60.108 55.0 0.0 0.0 38.13 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2367 0.037697 TCGTACATGAACGCTGCCTT 60.038 50.0 0.0 0.0 42.56 4.35 R
2656 2971 0.458543 CGAACACGATCACCCCTGAG 60.459 60.0 0.0 0.0 0.00 3.35 R
3490 4155 0.878416 GCGCCAACACTGTTGGATTA 59.122 50.0 35.6 0.0 42.06 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 4.917415 GGTCAAACAATAGTTGTCATGTGC 59.083 41.667 0.00 0.00 44.59 4.57
160 163 6.716628 CCATGTATGGTTAATCATAGTTGCCT 59.283 38.462 8.73 0.00 43.05 4.75
161 164 7.308770 CCATGTATGGTTAATCATAGTTGCCTG 60.309 40.741 8.73 1.59 43.05 4.85
214 218 0.953727 GCAGTTGCCATCTGTCAACA 59.046 50.000 6.84 0.00 43.55 3.33
252 256 3.628487 GTGTGTTTACCTAGTTGCCACAA 59.372 43.478 0.00 0.00 33.63 3.33
263 267 1.715862 TTGCCACAAACGCGCAACTA 61.716 50.000 5.73 0.00 37.58 2.24
289 293 2.686405 TGCCATCTATCAACGTACGAGT 59.314 45.455 24.41 6.31 0.00 4.18
341 347 2.682494 GGGCGGACTAGGTGGTGA 60.682 66.667 0.00 0.00 0.00 4.02
343 349 2.577593 GCGGACTAGGTGGTGACC 59.422 66.667 0.00 0.00 43.52 4.02
344 350 3.015312 GCGGACTAGGTGGTGACCC 62.015 68.421 0.00 0.00 44.40 4.46
369 376 1.815421 CGGGAACTGATTCGCCCAG 60.815 63.158 0.00 0.00 43.20 4.45
413 421 4.752879 CGGGTCGTGTGGGCGAAT 62.753 66.667 0.00 0.00 42.82 3.34
442 450 1.737838 CCCACACACACGATTATGCT 58.262 50.000 0.00 0.00 0.00 3.79
454 462 2.798145 CGATTATGCTCACGTGGCACTA 60.798 50.000 26.70 19.46 42.69 2.74
525 533 2.689646 TCAACGCGTGTGGATGAAATA 58.310 42.857 14.98 0.00 0.00 1.40
565 573 4.384547 GTGTGCGTTATCATTTGGGTTTTC 59.615 41.667 0.00 0.00 0.00 2.29
566 574 4.279671 TGTGCGTTATCATTTGGGTTTTCT 59.720 37.500 0.00 0.00 0.00 2.52
567 575 5.473846 TGTGCGTTATCATTTGGGTTTTCTA 59.526 36.000 0.00 0.00 0.00 2.10
568 576 6.151985 TGTGCGTTATCATTTGGGTTTTCTAT 59.848 34.615 0.00 0.00 0.00 1.98
569 577 7.033185 GTGCGTTATCATTTGGGTTTTCTATT 58.967 34.615 0.00 0.00 0.00 1.73
570 578 7.544217 GTGCGTTATCATTTGGGTTTTCTATTT 59.456 33.333 0.00 0.00 0.00 1.40
571 579 8.740906 TGCGTTATCATTTGGGTTTTCTATTTA 58.259 29.630 0.00 0.00 0.00 1.40
572 580 9.575783 GCGTTATCATTTGGGTTTTCTATTTAA 57.424 29.630 0.00 0.00 0.00 1.52
577 585 8.713708 TCATTTGGGTTTTCTATTTAAGGTGA 57.286 30.769 0.00 0.00 0.00 4.02
578 586 9.148879 TCATTTGGGTTTTCTATTTAAGGTGAA 57.851 29.630 0.00 0.00 0.00 3.18
579 587 9.771534 CATTTGGGTTTTCTATTTAAGGTGAAA 57.228 29.630 0.00 0.00 0.00 2.69
588 596 8.442605 TTCTATTTAAGGTGAAAATTTTCGCG 57.557 30.769 28.82 17.20 45.93 5.87
589 597 7.808672 TCTATTTAAGGTGAAAATTTTCGCGA 58.191 30.769 28.82 18.73 45.93 5.87
590 598 8.455682 TCTATTTAAGGTGAAAATTTTCGCGAT 58.544 29.630 28.82 23.38 45.93 4.58
591 599 7.883229 ATTTAAGGTGAAAATTTTCGCGATT 57.117 28.000 28.82 26.49 45.93 3.34
592 600 6.921332 TTAAGGTGAAAATTTTCGCGATTC 57.079 33.333 28.82 19.03 45.93 2.52
593 601 4.766404 AGGTGAAAATTTTCGCGATTCT 57.234 36.364 28.82 20.52 45.93 2.40
594 602 4.475944 AGGTGAAAATTTTCGCGATTCTG 58.524 39.130 28.82 0.00 45.93 3.02
595 603 3.059438 GGTGAAAATTTTCGCGATTCTGC 59.941 43.478 28.82 15.24 45.93 4.26
596 604 3.914364 GTGAAAATTTTCGCGATTCTGCT 59.086 39.130 24.29 0.00 40.01 4.24
597 605 5.086058 GTGAAAATTTTCGCGATTCTGCTA 58.914 37.500 24.29 2.52 40.01 3.49
598 606 5.225949 GTGAAAATTTTCGCGATTCTGCTAG 59.774 40.000 24.29 0.00 40.01 3.42
599 607 4.946784 AAATTTTCGCGATTCTGCTAGT 57.053 36.364 10.88 0.00 0.00 2.57
600 608 6.091577 TGAAAATTTTCGCGATTCTGCTAGTA 59.908 34.615 22.51 0.36 40.01 1.82
601 609 6.604735 AAATTTTCGCGATTCTGCTAGTAT 57.395 33.333 10.88 0.00 0.00 2.12
602 610 5.830900 ATTTTCGCGATTCTGCTAGTATC 57.169 39.130 10.88 0.00 0.00 2.24
603 611 3.982576 TTCGCGATTCTGCTAGTATCA 57.017 42.857 10.88 0.00 0.00 2.15
604 612 3.982576 TCGCGATTCTGCTAGTATCAA 57.017 42.857 3.71 0.00 0.00 2.57
605 613 4.505313 TCGCGATTCTGCTAGTATCAAT 57.495 40.909 3.71 0.00 0.00 2.57
606 614 4.871513 TCGCGATTCTGCTAGTATCAATT 58.128 39.130 3.71 0.00 0.00 2.32
607 615 5.289595 TCGCGATTCTGCTAGTATCAATTT 58.710 37.500 3.71 0.00 0.00 1.82
608 616 5.402568 TCGCGATTCTGCTAGTATCAATTTC 59.597 40.000 3.71 0.00 0.00 2.17
609 617 5.603452 GCGATTCTGCTAGTATCAATTTCG 58.397 41.667 0.00 0.00 0.00 3.46
610 618 5.402568 GCGATTCTGCTAGTATCAATTTCGA 59.597 40.000 0.00 0.00 0.00 3.71
611 619 6.090088 GCGATTCTGCTAGTATCAATTTCGAT 59.910 38.462 0.00 0.00 0.00 3.59
612 620 7.661859 CGATTCTGCTAGTATCAATTTCGATC 58.338 38.462 0.00 0.00 0.00 3.69
613 621 6.993175 TTCTGCTAGTATCAATTTCGATCG 57.007 37.500 9.36 9.36 0.00 3.69
614 622 5.461526 TCTGCTAGTATCAATTTCGATCGG 58.538 41.667 16.41 0.00 0.00 4.18
615 623 5.009710 TCTGCTAGTATCAATTTCGATCGGT 59.990 40.000 16.41 0.00 0.00 4.69
616 624 6.206048 TCTGCTAGTATCAATTTCGATCGGTA 59.794 38.462 16.41 3.77 0.00 4.02
617 625 6.379386 TGCTAGTATCAATTTCGATCGGTAG 58.621 40.000 16.41 1.57 0.00 3.18
618 626 5.286558 GCTAGTATCAATTTCGATCGGTAGC 59.713 44.000 16.41 8.29 0.00 3.58
619 627 5.196341 AGTATCAATTTCGATCGGTAGCA 57.804 39.130 16.41 0.00 0.00 3.49
620 628 5.597806 AGTATCAATTTCGATCGGTAGCAA 58.402 37.500 16.41 0.00 0.00 3.91
621 629 6.046593 AGTATCAATTTCGATCGGTAGCAAA 58.953 36.000 16.41 8.32 0.00 3.68
622 630 6.706270 AGTATCAATTTCGATCGGTAGCAAAT 59.294 34.615 16.41 10.35 0.00 2.32
623 631 5.403897 TCAATTTCGATCGGTAGCAAATC 57.596 39.130 16.41 0.00 0.00 2.17
624 632 4.026062 TCAATTTCGATCGGTAGCAAATCG 60.026 41.667 16.41 16.42 42.70 3.34
625 633 2.572191 TTCGATCGGTAGCAAATCGT 57.428 45.000 16.41 0.00 42.14 3.73
626 634 3.696281 TTCGATCGGTAGCAAATCGTA 57.304 42.857 16.41 11.97 42.14 3.43
627 635 2.990941 TCGATCGGTAGCAAATCGTAC 58.009 47.619 16.41 0.00 42.14 3.67
628 636 2.355444 TCGATCGGTAGCAAATCGTACA 59.645 45.455 16.41 5.12 42.14 2.90
629 637 3.004002 TCGATCGGTAGCAAATCGTACAT 59.996 43.478 16.41 0.00 42.14 2.29
630 638 4.213906 TCGATCGGTAGCAAATCGTACATA 59.786 41.667 16.41 4.57 42.14 2.29
631 639 4.320164 CGATCGGTAGCAAATCGTACATAC 59.680 45.833 7.38 0.00 37.95 2.39
632 640 4.635833 TCGGTAGCAAATCGTACATACA 57.364 40.909 0.00 0.00 0.00 2.29
633 641 4.996344 TCGGTAGCAAATCGTACATACAA 58.004 39.130 0.00 0.00 0.00 2.41
634 642 5.409211 TCGGTAGCAAATCGTACATACAAA 58.591 37.500 0.00 0.00 0.00 2.83
635 643 5.868258 TCGGTAGCAAATCGTACATACAAAA 59.132 36.000 0.00 0.00 0.00 2.44
636 644 6.035220 TCGGTAGCAAATCGTACATACAAAAG 59.965 38.462 0.00 0.00 0.00 2.27
637 645 6.035220 CGGTAGCAAATCGTACATACAAAAGA 59.965 38.462 0.00 0.00 0.00 2.52
638 646 7.412129 CGGTAGCAAATCGTACATACAAAAGAA 60.412 37.037 0.00 0.00 0.00 2.52
639 647 8.231837 GGTAGCAAATCGTACATACAAAAGAAA 58.768 33.333 0.00 0.00 0.00 2.52
640 648 9.601971 GTAGCAAATCGTACATACAAAAGAAAA 57.398 29.630 0.00 0.00 0.00 2.29
642 650 9.691362 AGCAAATCGTACATACAAAAGAAAATT 57.309 25.926 0.00 0.00 0.00 1.82
643 651 9.937577 GCAAATCGTACATACAAAAGAAAATTC 57.062 29.630 0.00 0.00 0.00 2.17
646 654 9.755064 AATCGTACATACAAAAGAAAATTCGAG 57.245 29.630 0.00 0.00 0.00 4.04
647 655 7.231607 TCGTACATACAAAAGAAAATTCGAGC 58.768 34.615 0.00 0.00 0.00 5.03
648 656 6.190333 CGTACATACAAAAGAAAATTCGAGCG 59.810 38.462 0.00 0.00 0.00 5.03
649 657 5.997385 ACATACAAAAGAAAATTCGAGCGT 58.003 33.333 0.00 0.00 0.00 5.07
650 658 6.077838 ACATACAAAAGAAAATTCGAGCGTC 58.922 36.000 0.00 0.00 0.00 5.19
651 659 4.813296 ACAAAAGAAAATTCGAGCGTCT 57.187 36.364 0.00 0.00 0.00 4.18
652 660 4.773510 ACAAAAGAAAATTCGAGCGTCTC 58.226 39.130 0.00 0.00 0.00 3.36
653 661 4.151798 CAAAAGAAAATTCGAGCGTCTCC 58.848 43.478 2.00 0.00 0.00 3.71
654 662 3.320673 AAGAAAATTCGAGCGTCTCCT 57.679 42.857 2.00 0.00 0.00 3.69
655 663 3.320673 AGAAAATTCGAGCGTCTCCTT 57.679 42.857 2.00 0.00 0.00 3.36
656 664 2.996621 AGAAAATTCGAGCGTCTCCTTG 59.003 45.455 2.00 0.00 0.00 3.61
657 665 1.726853 AAATTCGAGCGTCTCCTTGG 58.273 50.000 2.00 0.00 0.00 3.61
658 666 0.895530 AATTCGAGCGTCTCCTTGGA 59.104 50.000 2.00 0.00 0.00 3.53
659 667 0.457851 ATTCGAGCGTCTCCTTGGAG 59.542 55.000 10.28 10.28 0.00 3.86
660 668 1.595993 TTCGAGCGTCTCCTTGGAGG 61.596 60.000 15.81 3.12 36.46 4.30
661 669 2.185608 GAGCGTCTCCTTGGAGGC 59.814 66.667 15.81 13.48 44.38 4.70
664 672 4.821589 CGTCTCCTTGGAGGCGCC 62.822 72.222 27.01 21.89 43.40 6.53
665 673 3.394836 GTCTCCTTGGAGGCGCCT 61.395 66.667 33.48 33.48 34.61 5.52
666 674 2.058595 GTCTCCTTGGAGGCGCCTA 61.059 63.158 32.97 13.11 34.61 3.93
667 675 1.075226 TCTCCTTGGAGGCGCCTAT 60.075 57.895 32.97 9.00 34.61 2.57
668 676 1.115930 TCTCCTTGGAGGCGCCTATC 61.116 60.000 32.97 24.68 34.61 2.08
669 677 1.075226 TCCTTGGAGGCGCCTATCT 60.075 57.895 32.97 7.49 34.61 1.98
670 678 0.691078 TCCTTGGAGGCGCCTATCTT 60.691 55.000 32.97 6.98 34.61 2.40
671 679 0.533755 CCTTGGAGGCGCCTATCTTG 60.534 60.000 32.97 18.09 37.63 3.02
672 680 0.465705 CTTGGAGGCGCCTATCTTGA 59.534 55.000 32.97 11.47 37.63 3.02
673 681 0.178068 TTGGAGGCGCCTATCTTGAC 59.822 55.000 32.97 15.36 37.63 3.18
674 682 1.069935 GGAGGCGCCTATCTTGACC 59.930 63.158 32.97 21.11 0.00 4.02
675 683 1.300233 GAGGCGCCTATCTTGACCG 60.300 63.158 32.97 0.00 0.00 4.79
676 684 1.735376 GAGGCGCCTATCTTGACCGA 61.735 60.000 32.97 0.00 0.00 4.69
677 685 1.300233 GGCGCCTATCTTGACCGAG 60.300 63.158 22.15 0.00 0.00 4.63
678 686 1.437986 GCGCCTATCTTGACCGAGT 59.562 57.895 0.00 0.00 0.00 4.18
679 687 0.179108 GCGCCTATCTTGACCGAGTT 60.179 55.000 0.00 0.00 0.00 3.01
680 688 1.066605 GCGCCTATCTTGACCGAGTTA 59.933 52.381 0.00 0.00 0.00 2.24
681 689 2.859032 GCGCCTATCTTGACCGAGTTAG 60.859 54.545 0.00 0.00 0.00 2.34
682 690 2.617308 CGCCTATCTTGACCGAGTTAGA 59.383 50.000 4.64 0.00 0.00 2.10
683 691 3.304123 CGCCTATCTTGACCGAGTTAGAG 60.304 52.174 4.64 0.00 0.00 2.43
684 692 3.004944 GCCTATCTTGACCGAGTTAGAGG 59.995 52.174 4.64 0.00 0.00 3.69
685 693 4.462133 CCTATCTTGACCGAGTTAGAGGA 58.538 47.826 4.64 0.00 0.00 3.71
686 694 4.517453 CCTATCTTGACCGAGTTAGAGGAG 59.483 50.000 4.64 0.00 0.00 3.69
687 695 3.715638 TCTTGACCGAGTTAGAGGAGA 57.284 47.619 0.00 0.00 0.00 3.71
688 696 4.237976 TCTTGACCGAGTTAGAGGAGAT 57.762 45.455 0.00 0.00 0.00 2.75
689 697 4.601084 TCTTGACCGAGTTAGAGGAGATT 58.399 43.478 0.00 0.00 0.00 2.40
690 698 5.752650 TCTTGACCGAGTTAGAGGAGATTA 58.247 41.667 0.00 0.00 0.00 1.75
691 699 6.185511 TCTTGACCGAGTTAGAGGAGATTAA 58.814 40.000 0.00 0.00 0.00 1.40
692 700 6.834451 TCTTGACCGAGTTAGAGGAGATTAAT 59.166 38.462 0.00 0.00 0.00 1.40
693 701 6.392625 TGACCGAGTTAGAGGAGATTAATG 57.607 41.667 0.00 0.00 0.00 1.90
694 702 5.203060 ACCGAGTTAGAGGAGATTAATGC 57.797 43.478 0.00 0.00 0.00 3.56
695 703 4.896482 ACCGAGTTAGAGGAGATTAATGCT 59.104 41.667 0.00 0.00 0.00 3.79
696 704 6.069331 ACCGAGTTAGAGGAGATTAATGCTA 58.931 40.000 0.00 0.00 0.00 3.49
697 705 6.207810 ACCGAGTTAGAGGAGATTAATGCTAG 59.792 42.308 0.00 0.00 0.00 3.42
698 706 6.207810 CCGAGTTAGAGGAGATTAATGCTAGT 59.792 42.308 0.00 0.00 0.00 2.57
699 707 7.255660 CCGAGTTAGAGGAGATTAATGCTAGTT 60.256 40.741 0.00 0.00 0.00 2.24
700 708 8.138712 CGAGTTAGAGGAGATTAATGCTAGTTT 58.861 37.037 0.00 0.00 0.00 2.66
701 709 9.825109 GAGTTAGAGGAGATTAATGCTAGTTTT 57.175 33.333 0.00 0.00 0.00 2.43
702 710 9.606631 AGTTAGAGGAGATTAATGCTAGTTTTG 57.393 33.333 0.00 0.00 0.00 2.44
703 711 6.934048 AGAGGAGATTAATGCTAGTTTTGC 57.066 37.500 0.00 0.00 0.00 3.68
704 712 6.657875 AGAGGAGATTAATGCTAGTTTTGCT 58.342 36.000 0.00 0.00 0.00 3.91
705 713 7.115414 AGAGGAGATTAATGCTAGTTTTGCTT 58.885 34.615 0.00 0.00 0.00 3.91
706 714 7.281999 AGAGGAGATTAATGCTAGTTTTGCTTC 59.718 37.037 0.00 0.00 0.00 3.86
707 715 7.115414 AGGAGATTAATGCTAGTTTTGCTTCT 58.885 34.615 0.00 0.00 0.00 2.85
708 716 7.613411 AGGAGATTAATGCTAGTTTTGCTTCTT 59.387 33.333 0.00 0.00 0.00 2.52
709 717 8.246871 GGAGATTAATGCTAGTTTTGCTTCTTT 58.753 33.333 0.00 0.00 0.00 2.52
710 718 9.283420 GAGATTAATGCTAGTTTTGCTTCTTTC 57.717 33.333 0.00 0.00 0.00 2.62
711 719 9.018582 AGATTAATGCTAGTTTTGCTTCTTTCT 57.981 29.630 0.00 0.00 0.00 2.52
712 720 9.283420 GATTAATGCTAGTTTTGCTTCTTTCTC 57.717 33.333 0.00 0.00 0.00 2.87
713 721 6.890979 AATGCTAGTTTTGCTTCTTTCTCT 57.109 33.333 0.00 0.00 0.00 3.10
714 722 5.679734 TGCTAGTTTTGCTTCTTTCTCTG 57.320 39.130 0.00 0.00 0.00 3.35
715 723 5.126067 TGCTAGTTTTGCTTCTTTCTCTGT 58.874 37.500 0.00 0.00 0.00 3.41
716 724 5.590259 TGCTAGTTTTGCTTCTTTCTCTGTT 59.410 36.000 0.00 0.00 0.00 3.16
717 725 6.765989 TGCTAGTTTTGCTTCTTTCTCTGTTA 59.234 34.615 0.00 0.00 0.00 2.41
718 726 7.072647 GCTAGTTTTGCTTCTTTCTCTGTTAC 58.927 38.462 0.00 0.00 0.00 2.50
719 727 6.378710 AGTTTTGCTTCTTTCTCTGTTACC 57.621 37.500 0.00 0.00 0.00 2.85
720 728 5.299531 AGTTTTGCTTCTTTCTCTGTTACCC 59.700 40.000 0.00 0.00 0.00 3.69
721 729 4.431416 TTGCTTCTTTCTCTGTTACCCA 57.569 40.909 0.00 0.00 0.00 4.51
722 730 4.640771 TGCTTCTTTCTCTGTTACCCAT 57.359 40.909 0.00 0.00 0.00 4.00
723 731 4.326826 TGCTTCTTTCTCTGTTACCCATG 58.673 43.478 0.00 0.00 0.00 3.66
724 732 4.202461 TGCTTCTTTCTCTGTTACCCATGT 60.202 41.667 0.00 0.00 0.00 3.21
725 733 4.393371 GCTTCTTTCTCTGTTACCCATGTC 59.607 45.833 0.00 0.00 0.00 3.06
726 734 5.551233 CTTCTTTCTCTGTTACCCATGTCA 58.449 41.667 0.00 0.00 0.00 3.58
727 735 5.152623 TCTTTCTCTGTTACCCATGTCAG 57.847 43.478 0.00 0.00 0.00 3.51
728 736 4.593206 TCTTTCTCTGTTACCCATGTCAGT 59.407 41.667 0.00 0.00 0.00 3.41
729 737 5.778241 TCTTTCTCTGTTACCCATGTCAGTA 59.222 40.000 0.00 0.00 0.00 2.74
730 738 5.661056 TTCTCTGTTACCCATGTCAGTAG 57.339 43.478 0.00 0.00 0.00 2.57
731 739 4.023980 TCTCTGTTACCCATGTCAGTAGG 58.976 47.826 0.00 0.00 0.00 3.18
733 741 3.104512 CTGTTACCCATGTCAGTAGGGA 58.895 50.000 13.23 0.00 45.80 4.20
734 742 3.104512 TGTTACCCATGTCAGTAGGGAG 58.895 50.000 13.23 0.00 45.80 4.30
735 743 3.245839 TGTTACCCATGTCAGTAGGGAGA 60.246 47.826 13.23 0.63 45.80 3.71
736 744 2.877154 ACCCATGTCAGTAGGGAGAT 57.123 50.000 13.23 0.00 45.80 2.75
737 745 3.136641 ACCCATGTCAGTAGGGAGATT 57.863 47.619 13.23 0.00 45.80 2.40
738 746 4.280789 ACCCATGTCAGTAGGGAGATTA 57.719 45.455 13.23 0.00 45.80 1.75
739 747 4.631234 ACCCATGTCAGTAGGGAGATTAA 58.369 43.478 13.23 0.00 45.80 1.40
740 748 5.227593 ACCCATGTCAGTAGGGAGATTAAT 58.772 41.667 13.23 0.00 45.80 1.40
741 749 6.390504 ACCCATGTCAGTAGGGAGATTAATA 58.609 40.000 13.23 0.00 45.80 0.98
742 750 6.270231 ACCCATGTCAGTAGGGAGATTAATAC 59.730 42.308 13.23 0.00 45.80 1.89
743 751 6.498651 CCCATGTCAGTAGGGAGATTAATACT 59.501 42.308 2.34 0.00 45.80 2.12
744 752 7.310113 CCCATGTCAGTAGGGAGATTAATACTC 60.310 44.444 2.34 0.00 45.80 2.59
750 758 2.764439 GGAGATTAATACTCCGGCCC 57.236 55.000 14.35 0.00 43.25 5.80
751 759 1.975680 GGAGATTAATACTCCGGCCCA 59.024 52.381 14.35 0.00 43.25 5.36
752 760 2.289506 GGAGATTAATACTCCGGCCCAC 60.290 54.545 14.35 0.00 43.25 4.61
753 761 1.697982 AGATTAATACTCCGGCCCACC 59.302 52.381 0.00 0.00 0.00 4.61
754 762 1.697982 GATTAATACTCCGGCCCACCT 59.302 52.381 0.00 0.00 0.00 4.00
755 763 1.587066 TTAATACTCCGGCCCACCTT 58.413 50.000 0.00 0.00 0.00 3.50
756 764 1.587066 TAATACTCCGGCCCACCTTT 58.413 50.000 0.00 0.00 0.00 3.11
757 765 0.034477 AATACTCCGGCCCACCTTTG 60.034 55.000 0.00 0.00 0.00 2.77
758 766 1.205460 ATACTCCGGCCCACCTTTGT 61.205 55.000 0.00 0.00 0.00 2.83
759 767 2.119484 TACTCCGGCCCACCTTTGTG 62.119 60.000 0.00 0.00 42.39 3.33
760 768 4.966787 TCCGGCCCACCTTTGTGC 62.967 66.667 0.00 0.00 41.35 4.57
762 770 3.222855 CGGCCCACCTTTGTGCAA 61.223 61.111 0.00 0.00 41.35 4.08
763 771 2.790791 CGGCCCACCTTTGTGCAAA 61.791 57.895 0.00 0.00 41.35 3.68
764 772 1.524482 GGCCCACCTTTGTGCAAAA 59.476 52.632 0.00 0.00 41.35 2.44
765 773 0.108396 GGCCCACCTTTGTGCAAAAT 59.892 50.000 0.00 0.00 41.35 1.82
766 774 1.476652 GGCCCACCTTTGTGCAAAATT 60.477 47.619 0.00 0.00 41.35 1.82
767 775 2.224402 GGCCCACCTTTGTGCAAAATTA 60.224 45.455 0.00 0.00 41.35 1.40
768 776 3.066380 GCCCACCTTTGTGCAAAATTAG 58.934 45.455 0.00 0.00 41.35 1.73
769 777 3.066380 CCCACCTTTGTGCAAAATTAGC 58.934 45.455 0.00 0.00 41.35 3.09
770 778 3.066380 CCACCTTTGTGCAAAATTAGCC 58.934 45.455 0.00 0.00 41.35 3.93
771 779 3.494048 CCACCTTTGTGCAAAATTAGCCA 60.494 43.478 0.00 0.00 41.35 4.75
772 780 3.742369 CACCTTTGTGCAAAATTAGCCAG 59.258 43.478 0.00 0.00 35.31 4.85
773 781 2.738314 CCTTTGTGCAAAATTAGCCAGC 59.262 45.455 0.00 0.00 0.00 4.85
774 782 3.391965 CTTTGTGCAAAATTAGCCAGCA 58.608 40.909 0.00 0.00 0.00 4.41
778 786 3.681593 TGCAAAATTAGCCAGCACAAT 57.318 38.095 0.00 0.00 0.00 2.71
779 787 4.797800 TGCAAAATTAGCCAGCACAATA 57.202 36.364 0.00 0.00 0.00 1.90
780 788 4.746729 TGCAAAATTAGCCAGCACAATAG 58.253 39.130 0.00 0.00 0.00 1.73
781 789 4.462132 TGCAAAATTAGCCAGCACAATAGA 59.538 37.500 0.00 0.00 0.00 1.98
782 790 5.039333 GCAAAATTAGCCAGCACAATAGAG 58.961 41.667 0.00 0.00 0.00 2.43
783 791 5.393461 GCAAAATTAGCCAGCACAATAGAGT 60.393 40.000 0.00 0.00 0.00 3.24
784 792 5.824904 AAATTAGCCAGCACAATAGAGTG 57.175 39.130 0.00 0.00 42.37 3.51
785 793 2.988010 TAGCCAGCACAATAGAGTGG 57.012 50.000 0.00 0.00 39.87 4.00
786 794 1.279496 AGCCAGCACAATAGAGTGGA 58.721 50.000 0.00 0.00 39.87 4.02
787 795 1.065854 AGCCAGCACAATAGAGTGGAC 60.066 52.381 0.00 0.00 39.87 4.02
788 796 1.645034 CCAGCACAATAGAGTGGACG 58.355 55.000 0.00 0.00 39.87 4.79
789 797 1.645034 CAGCACAATAGAGTGGACGG 58.355 55.000 0.00 0.00 39.87 4.79
790 798 1.204704 CAGCACAATAGAGTGGACGGA 59.795 52.381 0.00 0.00 39.87 4.69
791 799 1.478510 AGCACAATAGAGTGGACGGAG 59.521 52.381 0.00 0.00 39.87 4.63
792 800 1.476891 GCACAATAGAGTGGACGGAGA 59.523 52.381 0.00 0.00 39.87 3.71
793 801 2.480416 GCACAATAGAGTGGACGGAGAG 60.480 54.545 0.00 0.00 39.87 3.20
794 802 2.755655 CACAATAGAGTGGACGGAGAGT 59.244 50.000 0.00 0.00 35.88 3.24
795 803 3.193691 CACAATAGAGTGGACGGAGAGTT 59.806 47.826 0.00 0.00 35.88 3.01
796 804 3.193691 ACAATAGAGTGGACGGAGAGTTG 59.806 47.826 0.00 0.00 0.00 3.16
797 805 1.835494 TAGAGTGGACGGAGAGTTGG 58.165 55.000 0.00 0.00 0.00 3.77
798 806 1.079750 GAGTGGACGGAGAGTTGGC 60.080 63.158 0.00 0.00 0.00 4.52
799 807 1.534235 AGTGGACGGAGAGTTGGCT 60.534 57.895 0.00 0.00 0.00 4.75
800 808 1.079750 GTGGACGGAGAGTTGGCTC 60.080 63.158 0.00 0.00 41.94 4.70
801 809 2.182030 GGACGGAGAGTTGGCTCG 59.818 66.667 0.00 0.00 46.03 5.03
802 810 2.341101 GGACGGAGAGTTGGCTCGA 61.341 63.158 0.00 0.00 46.03 4.04
803 811 1.668101 GGACGGAGAGTTGGCTCGAT 61.668 60.000 0.00 0.00 46.03 3.59
804 812 0.526524 GACGGAGAGTTGGCTCGATG 60.527 60.000 0.00 0.00 46.03 3.84
805 813 1.251527 ACGGAGAGTTGGCTCGATGT 61.252 55.000 0.00 0.00 46.03 3.06
806 814 0.803768 CGGAGAGTTGGCTCGATGTG 60.804 60.000 0.00 0.00 46.03 3.21
807 815 0.532573 GGAGAGTTGGCTCGATGTGA 59.467 55.000 0.00 0.00 46.03 3.58
808 816 1.470632 GGAGAGTTGGCTCGATGTGAG 60.471 57.143 0.00 0.00 46.03 3.51
817 825 2.322355 CTCGATGTGAGCCCTGATTT 57.678 50.000 0.00 0.00 38.03 2.17
818 826 2.208431 CTCGATGTGAGCCCTGATTTC 58.792 52.381 0.00 0.00 38.03 2.17
819 827 1.134401 TCGATGTGAGCCCTGATTTCC 60.134 52.381 0.00 0.00 0.00 3.13
820 828 1.134280 CGATGTGAGCCCTGATTTCCT 60.134 52.381 0.00 0.00 0.00 3.36
821 829 2.570135 GATGTGAGCCCTGATTTCCTC 58.430 52.381 0.00 0.00 0.00 3.71
822 830 0.620556 TGTGAGCCCTGATTTCCTCC 59.379 55.000 0.00 0.00 0.00 4.30
823 831 0.620556 GTGAGCCCTGATTTCCTCCA 59.379 55.000 0.00 0.00 0.00 3.86
824 832 1.213926 GTGAGCCCTGATTTCCTCCAT 59.786 52.381 0.00 0.00 0.00 3.41
825 833 1.925255 TGAGCCCTGATTTCCTCCATT 59.075 47.619 0.00 0.00 0.00 3.16
826 834 2.092212 TGAGCCCTGATTTCCTCCATTC 60.092 50.000 0.00 0.00 0.00 2.67
827 835 1.216427 AGCCCTGATTTCCTCCATTCC 59.784 52.381 0.00 0.00 0.00 3.01
828 836 1.216427 GCCCTGATTTCCTCCATTCCT 59.784 52.381 0.00 0.00 0.00 3.36
829 837 2.941480 CCCTGATTTCCTCCATTCCTG 58.059 52.381 0.00 0.00 0.00 3.86
830 838 2.305009 CCTGATTTCCTCCATTCCTGC 58.695 52.381 0.00 0.00 0.00 4.85
831 839 2.305009 CTGATTTCCTCCATTCCTGCC 58.695 52.381 0.00 0.00 0.00 4.85
832 840 1.925255 TGATTTCCTCCATTCCTGCCT 59.075 47.619 0.00 0.00 0.00 4.75
833 841 3.122480 TGATTTCCTCCATTCCTGCCTA 58.878 45.455 0.00 0.00 0.00 3.93
834 842 3.117888 TGATTTCCTCCATTCCTGCCTAC 60.118 47.826 0.00 0.00 0.00 3.18
835 843 0.830648 TTCCTCCATTCCTGCCTACG 59.169 55.000 0.00 0.00 0.00 3.51
836 844 1.048724 TCCTCCATTCCTGCCTACGG 61.049 60.000 0.00 0.00 0.00 4.02
837 845 1.048724 CCTCCATTCCTGCCTACGGA 61.049 60.000 0.00 0.00 0.00 4.69
838 846 1.051812 CTCCATTCCTGCCTACGGAT 58.948 55.000 0.00 0.00 0.00 4.18
839 847 0.758734 TCCATTCCTGCCTACGGATG 59.241 55.000 0.00 0.00 0.00 3.51
840 848 0.250467 CCATTCCTGCCTACGGATGG 60.250 60.000 0.00 0.00 0.00 3.51
841 849 0.758734 CATTCCTGCCTACGGATGGA 59.241 55.000 0.00 0.00 0.00 3.41
842 850 1.349026 CATTCCTGCCTACGGATGGAT 59.651 52.381 0.00 0.00 0.00 3.41
843 851 1.507140 TTCCTGCCTACGGATGGATT 58.493 50.000 0.00 0.00 0.00 3.01
844 852 0.758734 TCCTGCCTACGGATGGATTG 59.241 55.000 0.00 0.00 0.00 2.67
845 853 0.469917 CCTGCCTACGGATGGATTGT 59.530 55.000 0.00 0.00 0.00 2.71
846 854 1.691976 CCTGCCTACGGATGGATTGTA 59.308 52.381 0.00 0.00 0.00 2.41
847 855 2.104111 CCTGCCTACGGATGGATTGTAA 59.896 50.000 0.00 0.00 0.00 2.41
848 856 3.131396 CTGCCTACGGATGGATTGTAAC 58.869 50.000 0.00 0.00 0.00 2.50
849 857 2.502130 TGCCTACGGATGGATTGTAACA 59.498 45.455 0.00 0.00 0.00 2.41
850 858 2.870411 GCCTACGGATGGATTGTAACAC 59.130 50.000 0.00 0.00 0.00 3.32
851 859 3.463944 CCTACGGATGGATTGTAACACC 58.536 50.000 0.00 0.00 0.00 4.16
852 860 3.118555 CCTACGGATGGATTGTAACACCA 60.119 47.826 0.00 0.00 38.09 4.17
853 861 3.644966 ACGGATGGATTGTAACACCAT 57.355 42.857 0.00 0.00 45.50 3.55
854 862 3.278574 ACGGATGGATTGTAACACCATG 58.721 45.455 0.00 0.00 43.30 3.66
855 863 3.054728 ACGGATGGATTGTAACACCATGA 60.055 43.478 0.00 0.00 43.30 3.07
856 864 4.136796 CGGATGGATTGTAACACCATGAT 58.863 43.478 0.00 0.00 43.30 2.45
857 865 4.580167 CGGATGGATTGTAACACCATGATT 59.420 41.667 0.00 0.00 43.30 2.57
858 866 5.762711 CGGATGGATTGTAACACCATGATTA 59.237 40.000 0.00 0.00 43.30 1.75
859 867 6.430925 CGGATGGATTGTAACACCATGATTAT 59.569 38.462 0.00 0.00 43.30 1.28
860 868 7.361201 CGGATGGATTGTAACACCATGATTATC 60.361 40.741 0.00 0.00 43.30 1.75
861 869 7.448161 GGATGGATTGTAACACCATGATTATCA 59.552 37.037 0.00 0.00 43.30 2.15
862 870 7.806409 TGGATTGTAACACCATGATTATCAG 57.194 36.000 0.29 0.00 0.00 2.90
863 871 7.345691 TGGATTGTAACACCATGATTATCAGT 58.654 34.615 0.29 0.00 0.00 3.41
864 872 7.833682 TGGATTGTAACACCATGATTATCAGTT 59.166 33.333 0.29 2.31 0.00 3.16
865 873 9.337396 GGATTGTAACACCATGATTATCAGTTA 57.663 33.333 0.29 1.37 0.00 2.24
878 886 9.866655 ATGATTATCAGTTAATAAAAGCTCCCA 57.133 29.630 0.29 0.00 30.44 4.37
879 887 9.866655 TGATTATCAGTTAATAAAAGCTCCCAT 57.133 29.630 0.00 0.00 30.44 4.00
884 892 8.378172 TCAGTTAATAAAAGCTCCCATATTCG 57.622 34.615 0.00 0.00 0.00 3.34
885 893 8.208224 TCAGTTAATAAAAGCTCCCATATTCGA 58.792 33.333 0.00 0.00 0.00 3.71
886 894 8.283291 CAGTTAATAAAAGCTCCCATATTCGAC 58.717 37.037 0.00 0.00 0.00 4.20
887 895 5.924475 AATAAAAGCTCCCATATTCGACG 57.076 39.130 0.00 0.00 0.00 5.12
888 896 1.583054 AAAGCTCCCATATTCGACGC 58.417 50.000 0.00 0.00 0.00 5.19
889 897 0.464036 AAGCTCCCATATTCGACGCA 59.536 50.000 0.00 0.00 0.00 5.24
890 898 0.464036 AGCTCCCATATTCGACGCAA 59.536 50.000 0.00 0.00 0.00 4.85
891 899 1.134521 AGCTCCCATATTCGACGCAAA 60.135 47.619 0.00 0.00 0.00 3.68
892 900 1.668751 GCTCCCATATTCGACGCAAAA 59.331 47.619 0.00 0.00 0.00 2.44
893 901 2.096819 GCTCCCATATTCGACGCAAAAA 59.903 45.455 0.00 0.00 0.00 1.94
1262 1270 4.003788 CGTCCTGGCCGACAAGGT 62.004 66.667 10.86 0.00 43.70 3.50
1435 1443 2.435372 TTGTTTGTGCTCTGGAACCT 57.565 45.000 0.00 0.00 0.00 3.50
1464 1472 3.879892 CCTACTCCAGCCAAATCTTTAGC 59.120 47.826 0.00 0.00 0.00 3.09
1594 1900 5.606348 TCCTAACAAACAAGGCAACAATT 57.394 34.783 0.00 0.00 41.41 2.32
1669 1977 8.648698 TCAAATCATTAGAAACAATTCCCTCA 57.351 30.769 0.00 0.00 36.12 3.86
1670 1978 9.087871 TCAAATCATTAGAAACAATTCCCTCAA 57.912 29.630 0.00 0.00 36.12 3.02
1671 1979 9.709495 CAAATCATTAGAAACAATTCCCTCAAA 57.291 29.630 0.00 0.00 36.12 2.69
1764 2072 1.691434 GGCCATTGGGTGAAAGAAACA 59.309 47.619 4.53 0.00 36.17 2.83
1766 2074 3.513515 GGCCATTGGGTGAAAGAAACATA 59.486 43.478 4.53 0.00 36.17 2.29
1807 2120 8.851145 TGTTAACTTCTGCACATTTGGTATAAA 58.149 29.630 7.22 0.00 0.00 1.40
1808 2121 9.124807 GTTAACTTCTGCACATTTGGTATAAAC 57.875 33.333 0.00 0.00 0.00 2.01
1809 2122 7.524717 AACTTCTGCACATTTGGTATAAACT 57.475 32.000 0.00 0.00 0.00 2.66
1810 2123 8.630054 AACTTCTGCACATTTGGTATAAACTA 57.370 30.769 0.00 0.00 0.00 2.24
1811 2124 8.807948 ACTTCTGCACATTTGGTATAAACTAT 57.192 30.769 0.00 0.00 0.00 2.12
1812 2125 9.899661 ACTTCTGCACATTTGGTATAAACTATA 57.100 29.630 0.00 0.00 0.00 1.31
1834 2147 9.729023 CTATAAACTGAGATCATATCGATGGTC 57.271 37.037 8.54 0.00 42.72 4.02
2054 2367 2.048597 CTTGACGGCAGCCACGTA 60.049 61.111 13.30 0.00 45.68 3.57
2128 2443 1.078848 CAAGGTCCTCAAGCTCCCG 60.079 63.158 0.00 0.00 33.60 5.14
2154 2469 0.250166 CCGGACGGGGAATATGAACC 60.250 60.000 0.00 0.00 0.00 3.62
2155 2470 0.250166 CGGACGGGGAATATGAACCC 60.250 60.000 0.00 0.00 44.89 4.11
2158 2473 4.494515 GGGGAATATGAACCCGCC 57.505 61.111 0.00 0.00 46.42 6.13
2159 2474 1.228459 GGGGAATATGAACCCGCCC 60.228 63.158 0.00 0.00 46.42 6.13
2160 2475 1.228459 GGGAATATGAACCCGCCCC 60.228 63.158 0.00 0.00 36.56 5.80
2161 2476 1.534697 GGAATATGAACCCGCCCCA 59.465 57.895 0.00 0.00 0.00 4.96
2162 2477 0.537371 GGAATATGAACCCGCCCCAG 60.537 60.000 0.00 0.00 0.00 4.45
2163 2478 0.537371 GAATATGAACCCGCCCCAGG 60.537 60.000 0.00 0.00 0.00 4.45
2194 2509 2.933287 AAGATCCACCGTGGCCCA 60.933 61.111 13.19 0.00 37.47 5.36
2263 2578 2.040278 CTCCATGTTTGTCTTCCTCCCA 59.960 50.000 0.00 0.00 0.00 4.37
2356 2671 1.156736 CCACGGAAACCAAGCTAGTG 58.843 55.000 0.00 0.00 0.00 2.74
2365 2680 3.923017 ACCAAGCTAGTGCAAATCAAC 57.077 42.857 0.00 0.00 42.74 3.18
2404 2719 0.405585 CATTGGACTGGGACCTTGGT 59.594 55.000 0.00 0.00 0.00 3.67
2407 2722 0.192566 TGGACTGGGACCTTGGTAGT 59.807 55.000 0.00 0.00 0.00 2.73
2477 2792 0.108186 CCTGCGAGGCATGTACAAGA 60.108 55.000 0.00 0.00 38.13 3.02
2615 2930 1.447838 CCGGACCATGTGGAGTTCG 60.448 63.158 5.96 4.03 38.94 3.95
2620 2935 2.100631 CCATGTGGAGTTCGTCGCC 61.101 63.158 0.00 0.00 37.39 5.54
2623 2938 2.804090 GTGGAGTTCGTCGCCGAC 60.804 66.667 7.29 7.29 44.13 4.79
2656 2971 0.034476 TCATCATCATGGAGGAGCGC 59.966 55.000 0.00 0.00 0.00 5.92
2722 3037 1.025812 AGTGATCACGTCGAGATCCC 58.974 55.000 23.99 16.03 40.87 3.85
2731 3046 2.587194 CGAGATCCCAAGCGCAGG 60.587 66.667 11.47 11.53 0.00 4.85
2767 3082 3.922240 GCGTACTGAACTTAAATCGACCA 59.078 43.478 0.00 0.00 0.00 4.02
2768 3083 4.565564 GCGTACTGAACTTAAATCGACCAT 59.434 41.667 0.00 0.00 0.00 3.55
2774 3089 8.348983 ACTGAACTTAAATCGACCATATTACG 57.651 34.615 0.00 0.00 0.00 3.18
2777 3092 8.597227 TGAACTTAAATCGACCATATTACGTTG 58.403 33.333 0.00 0.00 0.00 4.10
2833 3148 0.167689 GCTCTGCTCCTTGCTTTTCG 59.832 55.000 0.00 0.00 43.37 3.46
2889 3204 2.035704 TGTTAGGCAACAACATTGCAGG 59.964 45.455 13.20 0.00 46.58 4.85
2905 3220 3.365265 GGCCCAGCAAACACCGAG 61.365 66.667 0.00 0.00 0.00 4.63
2906 3221 3.365265 GCCCAGCAAACACCGAGG 61.365 66.667 0.00 0.00 0.00 4.63
2926 3241 3.014623 GGTGAATAGGGTTAACACAGGC 58.985 50.000 11.16 0.00 33.82 4.85
2933 3248 0.393267 GGTTAACACAGGCCGCCATA 60.393 55.000 13.15 0.00 0.00 2.74
2934 3249 0.730840 GTTAACACAGGCCGCCATAC 59.269 55.000 13.15 0.00 0.00 2.39
2983 3349 0.806492 GCCGTGGCAGTAGCTAGTTC 60.806 60.000 5.89 0.00 41.70 3.01
2991 3357 3.508762 GCAGTAGCTAGTTCGCAAGTTA 58.491 45.455 0.00 0.00 37.91 2.24
2992 3358 3.924686 GCAGTAGCTAGTTCGCAAGTTAA 59.075 43.478 0.00 0.00 37.91 2.01
3000 3366 7.078228 AGCTAGTTCGCAAGTTAAAAGAATTG 58.922 34.615 0.00 0.00 39.48 2.32
3022 3388 7.482654 TTGAACAAGATGTTAGTGACAAGAG 57.517 36.000 0.00 0.00 41.28 2.85
3026 3392 6.226787 ACAAGATGTTAGTGACAAGAGGAAG 58.773 40.000 0.00 0.00 42.62 3.46
3031 3397 4.202326 TGTTAGTGACAAGAGGAAGGGAAC 60.202 45.833 0.00 0.00 34.69 3.62
3040 3406 6.023603 ACAAGAGGAAGGGAACTATCAAGTA 58.976 40.000 0.00 0.00 42.68 2.24
3090 3456 1.648720 GCTTGTGCTGAGCGTTCAA 59.351 52.632 2.85 4.76 36.03 2.69
3094 3460 2.686558 TGTGCTGAGCGTTCAATTTC 57.313 45.000 2.85 0.00 31.69 2.17
3104 3470 3.098636 GCGTTCAATTTCTTCATACGGC 58.901 45.455 0.00 0.00 0.00 5.68
3108 3474 2.933906 TCAATTTCTTCATACGGCGTCC 59.066 45.455 19.21 0.00 0.00 4.79
3117 3483 4.859304 TCATACGGCGTCCAAATAGTAT 57.141 40.909 19.21 0.00 0.00 2.12
3121 3527 2.429610 ACGGCGTCCAAATAGTATCTGT 59.570 45.455 6.77 0.00 0.00 3.41
3131 3537 9.850628 GTCCAAATAGTATCTGTATACGCATTA 57.149 33.333 0.00 0.00 42.45 1.90
3134 3540 9.856488 CAAATAGTATCTGTATACGCATTAGGT 57.144 33.333 0.00 0.00 42.45 3.08
3167 3573 2.420568 ATGCAAATCCCTGGCAGCG 61.421 57.895 9.56 0.00 41.40 5.18
3188 3594 3.252215 CGTGTTTGGCTACAATGGAGAAA 59.748 43.478 0.00 0.00 36.29 2.52
3224 3630 7.569240 AGTTTAGAGGTGGAATTTATCAGGAG 58.431 38.462 0.00 0.00 0.00 3.69
3238 3644 2.333069 TCAGGAGATTAGGCATGGGAG 58.667 52.381 0.00 0.00 0.00 4.30
3246 3652 1.080638 TAGGCATGGGAGGTTGGTTT 58.919 50.000 0.00 0.00 0.00 3.27
3258 3664 5.361571 GGGAGGTTGGTTTTTAGTCTCAAAA 59.638 40.000 0.00 0.00 0.00 2.44
3318 3725 6.414732 TCTAACATCCCACCTGAATTAACAG 58.585 40.000 0.00 0.00 37.61 3.16
3344 3751 6.372659 GGAGAGAGCAGAGAAGAGATATGTAG 59.627 46.154 0.00 0.00 0.00 2.74
3365 4023 1.558756 CAATCAGCCTCCTCAACTCCT 59.441 52.381 0.00 0.00 0.00 3.69
3374 4032 2.166664 CTCCTCAACTCCTTAACCTCCG 59.833 54.545 0.00 0.00 0.00 4.63
3377 4035 2.826725 CTCAACTCCTTAACCTCCGACT 59.173 50.000 0.00 0.00 0.00 4.18
3383 4041 4.220163 ACTCCTTAACCTCCGACTAAACAG 59.780 45.833 0.00 0.00 0.00 3.16
3399 4064 7.545965 CGACTAAACAGTGGATTAAATGTCTCT 59.454 37.037 0.00 0.00 0.00 3.10
3480 4145 5.360144 GGTGTAGTATAAGAAGGCAGAGTCA 59.640 44.000 0.00 0.00 0.00 3.41
3486 4151 7.856415 AGTATAAGAAGGCAGAGTCAAAGATT 58.144 34.615 0.00 0.00 0.00 2.40
3488 4153 5.702349 AAGAAGGCAGAGTCAAAGATTTG 57.298 39.130 0.00 0.00 39.48 2.32
3584 4251 0.528017 GAGTGATCTGCTCGTGGTGA 59.472 55.000 0.00 0.00 0.00 4.02
3692 4364 9.027129 CAAATATGCATTTACCTTGAAGATGTG 57.973 33.333 3.54 0.00 32.96 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.427547 ACGGAAACTATGGTTTGATTAAACGA 59.572 34.615 12.36 3.81 45.60 3.85
29 30 6.938030 ACAGACGGAAACTATGGTTTGATTAA 59.062 34.615 12.36 0.00 44.58 1.40
46 47 4.202121 GGCAAGTAGATAATCACAGACGGA 60.202 45.833 0.00 0.00 0.00 4.69
99 100 0.038892 ACACGTGGCAACTAGGTACG 60.039 55.000 21.57 0.04 40.30 3.67
160 163 2.235016 GGCAACCAGATAAACACACCA 58.765 47.619 0.00 0.00 0.00 4.17
161 164 2.030274 GTGGCAACCAGATAAACACACC 60.030 50.000 0.00 0.00 32.34 4.16
214 218 5.726980 AACACACATGGCAACTATGATTT 57.273 34.783 0.00 0.00 37.61 2.17
252 256 3.086161 GCAATTGTAGTTGCGCGTT 57.914 47.368 8.43 0.00 44.20 4.84
263 267 4.270084 CGTACGTTGATAGATGGCAATTGT 59.730 41.667 7.22 0.00 0.00 2.71
289 293 1.300620 CTCTTCGCCCACACGACAA 60.301 57.895 0.00 0.00 42.78 3.18
343 349 2.484287 AATCAGTTCCCGCCCACAGG 62.484 60.000 0.00 0.00 0.00 4.00
344 350 1.002134 AATCAGTTCCCGCCCACAG 60.002 57.895 0.00 0.00 0.00 3.66
369 376 4.077188 GTTGCCAGCTGCGTCGTC 62.077 66.667 8.66 0.00 45.60 4.20
413 421 1.525077 GTGTGTGGGCGTTGGAGAA 60.525 57.895 0.00 0.00 0.00 2.87
442 450 5.057819 TGTTAGATTTTTAGTGCCACGTGA 58.942 37.500 19.30 0.00 0.00 4.35
476 484 6.305399 ACGTTAATTCTGTTTTGCATGAATCG 59.695 34.615 0.00 0.00 30.36 3.34
525 533 2.987413 CACACGTGTGGCATGTTTAT 57.013 45.000 35.65 0.55 42.10 1.40
545 553 6.767524 ATAGAAAACCCAAATGATAACGCA 57.232 33.333 0.00 0.00 0.00 5.24
565 573 8.614994 ATCGCGAAAATTTTCACCTTAAATAG 57.385 30.769 26.20 10.23 37.01 1.73
566 574 8.973835 AATCGCGAAAATTTTCACCTTAAATA 57.026 26.923 26.20 5.54 37.01 1.40
567 575 7.812669 AGAATCGCGAAAATTTTCACCTTAAAT 59.187 29.630 26.20 9.77 37.01 1.40
568 576 7.114247 CAGAATCGCGAAAATTTTCACCTTAAA 59.886 33.333 26.20 8.18 37.01 1.52
569 577 6.580791 CAGAATCGCGAAAATTTTCACCTTAA 59.419 34.615 26.20 9.07 37.01 1.85
570 578 6.083630 CAGAATCGCGAAAATTTTCACCTTA 58.916 36.000 26.20 10.25 37.01 2.69
571 579 4.917415 CAGAATCGCGAAAATTTTCACCTT 59.083 37.500 26.20 15.17 37.01 3.50
572 580 4.475944 CAGAATCGCGAAAATTTTCACCT 58.524 39.130 26.20 9.80 37.01 4.00
573 581 3.059438 GCAGAATCGCGAAAATTTTCACC 59.941 43.478 26.20 16.75 37.01 4.02
574 582 3.914364 AGCAGAATCGCGAAAATTTTCAC 59.086 39.130 26.20 17.87 37.01 3.18
575 583 4.159377 AGCAGAATCGCGAAAATTTTCA 57.841 36.364 26.20 11.02 37.01 2.69
576 584 5.324697 ACTAGCAGAATCGCGAAAATTTTC 58.675 37.500 15.24 19.08 36.85 2.29
577 585 5.296813 ACTAGCAGAATCGCGAAAATTTT 57.703 34.783 15.24 2.28 36.85 1.82
578 586 4.946784 ACTAGCAGAATCGCGAAAATTT 57.053 36.364 15.24 1.55 36.85 1.82
579 587 5.753438 TGATACTAGCAGAATCGCGAAAATT 59.247 36.000 15.24 2.02 36.85 1.82
580 588 5.289595 TGATACTAGCAGAATCGCGAAAAT 58.710 37.500 15.24 1.64 36.85 1.82
581 589 4.678622 TGATACTAGCAGAATCGCGAAAA 58.321 39.130 15.24 0.00 36.85 2.29
582 590 4.301637 TGATACTAGCAGAATCGCGAAA 57.698 40.909 15.24 0.00 36.85 3.46
583 591 3.982576 TGATACTAGCAGAATCGCGAA 57.017 42.857 15.24 0.00 36.85 4.70
584 592 3.982576 TTGATACTAGCAGAATCGCGA 57.017 42.857 13.09 13.09 36.85 5.87
585 593 5.582439 AAATTGATACTAGCAGAATCGCG 57.418 39.130 0.00 0.00 36.85 5.87
586 594 5.402568 TCGAAATTGATACTAGCAGAATCGC 59.597 40.000 0.00 0.00 0.00 4.58
587 595 6.993175 TCGAAATTGATACTAGCAGAATCG 57.007 37.500 0.00 0.00 0.00 3.34
588 596 7.201393 CCGATCGAAATTGATACTAGCAGAATC 60.201 40.741 18.66 0.00 0.00 2.52
589 597 6.587990 CCGATCGAAATTGATACTAGCAGAAT 59.412 38.462 18.66 0.00 0.00 2.40
590 598 5.920840 CCGATCGAAATTGATACTAGCAGAA 59.079 40.000 18.66 0.00 0.00 3.02
591 599 5.009710 ACCGATCGAAATTGATACTAGCAGA 59.990 40.000 18.66 0.00 0.00 4.26
592 600 5.223382 ACCGATCGAAATTGATACTAGCAG 58.777 41.667 18.66 0.00 0.00 4.24
593 601 5.196341 ACCGATCGAAATTGATACTAGCA 57.804 39.130 18.66 0.00 0.00 3.49
594 602 5.286558 GCTACCGATCGAAATTGATACTAGC 59.713 44.000 18.66 5.00 0.00 3.42
595 603 6.379386 TGCTACCGATCGAAATTGATACTAG 58.621 40.000 18.66 0.00 0.00 2.57
596 604 6.321848 TGCTACCGATCGAAATTGATACTA 57.678 37.500 18.66 0.00 0.00 1.82
597 605 5.196341 TGCTACCGATCGAAATTGATACT 57.804 39.130 18.66 0.00 0.00 2.12
598 606 5.900339 TTGCTACCGATCGAAATTGATAC 57.100 39.130 18.66 0.00 0.00 2.24
599 607 6.128929 CGATTTGCTACCGATCGAAATTGATA 60.129 38.462 18.66 0.00 43.86 2.15
600 608 5.333339 CGATTTGCTACCGATCGAAATTGAT 60.333 40.000 18.66 2.12 43.86 2.57
601 609 4.026062 CGATTTGCTACCGATCGAAATTGA 60.026 41.667 18.66 0.00 43.86 2.57
602 610 4.203828 CGATTTGCTACCGATCGAAATTG 58.796 43.478 18.66 13.40 43.86 2.32
603 611 3.869246 ACGATTTGCTACCGATCGAAATT 59.131 39.130 18.66 0.00 43.86 1.82
604 612 3.454375 ACGATTTGCTACCGATCGAAAT 58.546 40.909 18.66 13.73 43.86 2.17
605 613 2.883574 ACGATTTGCTACCGATCGAAA 58.116 42.857 18.66 9.08 43.86 3.46
606 614 2.572191 ACGATTTGCTACCGATCGAA 57.428 45.000 18.66 1.31 43.86 3.71
607 615 2.355444 TGTACGATTTGCTACCGATCGA 59.645 45.455 18.66 0.00 43.86 3.59
608 616 2.723209 TGTACGATTTGCTACCGATCG 58.277 47.619 8.51 8.51 45.87 3.69
609 617 5.217393 TGTATGTACGATTTGCTACCGATC 58.783 41.667 0.00 0.00 0.00 3.69
610 618 5.190992 TGTATGTACGATTTGCTACCGAT 57.809 39.130 0.00 0.00 0.00 4.18
611 619 4.635833 TGTATGTACGATTTGCTACCGA 57.364 40.909 0.00 0.00 0.00 4.69
612 620 5.705813 TTTGTATGTACGATTTGCTACCG 57.294 39.130 0.00 0.00 0.00 4.02
613 621 7.298507 TCTTTTGTATGTACGATTTGCTACC 57.701 36.000 0.00 0.00 0.00 3.18
614 622 9.601971 TTTTCTTTTGTATGTACGATTTGCTAC 57.398 29.630 0.00 0.00 0.00 3.58
616 624 9.691362 AATTTTCTTTTGTATGTACGATTTGCT 57.309 25.926 0.00 0.00 0.00 3.91
617 625 9.937577 GAATTTTCTTTTGTATGTACGATTTGC 57.062 29.630 0.00 0.00 0.00 3.68
620 628 9.755064 CTCGAATTTTCTTTTGTATGTACGATT 57.245 29.630 0.00 0.00 0.00 3.34
621 629 7.903431 GCTCGAATTTTCTTTTGTATGTACGAT 59.097 33.333 0.00 0.00 0.00 3.73
622 630 7.231607 GCTCGAATTTTCTTTTGTATGTACGA 58.768 34.615 0.00 0.00 0.00 3.43
623 631 6.190333 CGCTCGAATTTTCTTTTGTATGTACG 59.810 38.462 0.00 0.00 0.00 3.67
624 632 7.013529 ACGCTCGAATTTTCTTTTGTATGTAC 58.986 34.615 0.00 0.00 0.00 2.90
625 633 7.117236 AGACGCTCGAATTTTCTTTTGTATGTA 59.883 33.333 0.00 0.00 0.00 2.29
626 634 5.997385 ACGCTCGAATTTTCTTTTGTATGT 58.003 33.333 0.00 0.00 0.00 2.29
627 635 6.307155 AGACGCTCGAATTTTCTTTTGTATG 58.693 36.000 0.00 0.00 0.00 2.39
628 636 6.402226 GGAGACGCTCGAATTTTCTTTTGTAT 60.402 38.462 0.00 0.00 0.00 2.29
629 637 5.107220 GGAGACGCTCGAATTTTCTTTTGTA 60.107 40.000 0.00 0.00 0.00 2.41
630 638 4.319549 GGAGACGCTCGAATTTTCTTTTGT 60.320 41.667 0.00 0.00 0.00 2.83
631 639 4.083802 AGGAGACGCTCGAATTTTCTTTTG 60.084 41.667 0.00 0.00 0.00 2.44
632 640 4.065789 AGGAGACGCTCGAATTTTCTTTT 58.934 39.130 0.00 0.00 0.00 2.27
633 641 3.665190 AGGAGACGCTCGAATTTTCTTT 58.335 40.909 0.00 0.00 0.00 2.52
634 642 3.320673 AGGAGACGCTCGAATTTTCTT 57.679 42.857 0.00 0.00 0.00 2.52
635 643 2.996621 CAAGGAGACGCTCGAATTTTCT 59.003 45.455 0.00 0.00 0.00 2.52
636 644 2.094417 CCAAGGAGACGCTCGAATTTTC 59.906 50.000 0.00 0.00 0.00 2.29
637 645 2.076863 CCAAGGAGACGCTCGAATTTT 58.923 47.619 0.00 0.00 0.00 1.82
638 646 1.275291 TCCAAGGAGACGCTCGAATTT 59.725 47.619 0.00 0.00 0.00 1.82
639 647 0.895530 TCCAAGGAGACGCTCGAATT 59.104 50.000 0.00 0.00 0.00 2.17
640 648 0.457851 CTCCAAGGAGACGCTCGAAT 59.542 55.000 10.66 0.00 44.53 3.34
641 649 1.595993 CCTCCAAGGAGACGCTCGAA 61.596 60.000 17.57 0.00 44.53 3.71
642 650 2.046864 CCTCCAAGGAGACGCTCGA 61.047 63.158 17.57 0.00 44.53 4.04
643 651 2.492090 CCTCCAAGGAGACGCTCG 59.508 66.667 17.57 0.00 44.53 5.03
644 652 2.185608 GCCTCCAAGGAGACGCTC 59.814 66.667 17.57 0.00 44.53 5.03
645 653 3.764466 CGCCTCCAAGGAGACGCT 61.764 66.667 17.57 0.00 44.53 5.07
648 656 1.403687 ATAGGCGCCTCCAAGGAGAC 61.404 60.000 36.73 4.94 44.42 3.36
649 657 1.075226 ATAGGCGCCTCCAAGGAGA 60.075 57.895 36.73 14.03 44.53 3.71
650 658 1.118356 AGATAGGCGCCTCCAAGGAG 61.118 60.000 36.73 9.20 37.67 3.69
651 659 0.691078 AAGATAGGCGCCTCCAAGGA 60.691 55.000 36.73 15.87 37.67 3.36
652 660 0.533755 CAAGATAGGCGCCTCCAAGG 60.534 60.000 36.73 17.64 38.80 3.61
653 661 0.465705 TCAAGATAGGCGCCTCCAAG 59.534 55.000 36.73 20.18 37.29 3.61
654 662 0.178068 GTCAAGATAGGCGCCTCCAA 59.822 55.000 36.73 17.74 37.29 3.53
655 663 1.686325 GGTCAAGATAGGCGCCTCCA 61.686 60.000 36.73 18.67 37.29 3.86
656 664 1.069935 GGTCAAGATAGGCGCCTCC 59.930 63.158 36.73 25.75 0.00 4.30
657 665 1.300233 CGGTCAAGATAGGCGCCTC 60.300 63.158 36.73 21.08 0.00 4.70
658 666 1.739338 CTCGGTCAAGATAGGCGCCT 61.739 60.000 34.85 34.85 0.00 5.52
659 667 1.300233 CTCGGTCAAGATAGGCGCC 60.300 63.158 21.89 21.89 0.00 6.53
660 668 0.179108 AACTCGGTCAAGATAGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
661 669 2.617308 TCTAACTCGGTCAAGATAGGCG 59.383 50.000 0.00 0.00 0.00 5.52
662 670 3.004944 CCTCTAACTCGGTCAAGATAGGC 59.995 52.174 0.00 0.00 0.00 3.93
663 671 4.462133 TCCTCTAACTCGGTCAAGATAGG 58.538 47.826 0.00 0.00 0.00 2.57
664 672 5.369833 TCTCCTCTAACTCGGTCAAGATAG 58.630 45.833 0.00 0.00 0.00 2.08
665 673 5.369409 TCTCCTCTAACTCGGTCAAGATA 57.631 43.478 0.00 0.00 0.00 1.98
666 674 4.237976 TCTCCTCTAACTCGGTCAAGAT 57.762 45.455 0.00 0.00 0.00 2.40
667 675 3.715638 TCTCCTCTAACTCGGTCAAGA 57.284 47.619 0.00 0.00 0.00 3.02
668 676 4.993029 AATCTCCTCTAACTCGGTCAAG 57.007 45.455 0.00 0.00 0.00 3.02
669 677 6.683110 GCATTAATCTCCTCTAACTCGGTCAA 60.683 42.308 0.00 0.00 0.00 3.18
670 678 5.221263 GCATTAATCTCCTCTAACTCGGTCA 60.221 44.000 0.00 0.00 0.00 4.02
671 679 5.010213 AGCATTAATCTCCTCTAACTCGGTC 59.990 44.000 0.00 0.00 0.00 4.79
672 680 4.896482 AGCATTAATCTCCTCTAACTCGGT 59.104 41.667 0.00 0.00 0.00 4.69
673 681 5.461032 AGCATTAATCTCCTCTAACTCGG 57.539 43.478 0.00 0.00 0.00 4.63
674 682 7.209471 ACTAGCATTAATCTCCTCTAACTCG 57.791 40.000 0.00 0.00 0.00 4.18
675 683 9.825109 AAAACTAGCATTAATCTCCTCTAACTC 57.175 33.333 0.00 0.00 0.00 3.01
676 684 9.606631 CAAAACTAGCATTAATCTCCTCTAACT 57.393 33.333 0.00 0.00 0.00 2.24
677 685 8.338986 GCAAAACTAGCATTAATCTCCTCTAAC 58.661 37.037 0.00 0.00 0.00 2.34
678 686 8.267894 AGCAAAACTAGCATTAATCTCCTCTAA 58.732 33.333 0.00 0.00 0.00 2.10
679 687 7.796054 AGCAAAACTAGCATTAATCTCCTCTA 58.204 34.615 0.00 0.00 0.00 2.43
680 688 6.657875 AGCAAAACTAGCATTAATCTCCTCT 58.342 36.000 0.00 0.00 0.00 3.69
681 689 6.934048 AGCAAAACTAGCATTAATCTCCTC 57.066 37.500 0.00 0.00 0.00 3.71
682 690 7.115414 AGAAGCAAAACTAGCATTAATCTCCT 58.885 34.615 0.00 0.00 0.00 3.69
683 691 7.326968 AGAAGCAAAACTAGCATTAATCTCC 57.673 36.000 0.00 0.00 0.00 3.71
684 692 9.283420 GAAAGAAGCAAAACTAGCATTAATCTC 57.717 33.333 0.00 0.00 0.00 2.75
685 693 9.018582 AGAAAGAAGCAAAACTAGCATTAATCT 57.981 29.630 0.00 0.00 0.00 2.40
686 694 9.283420 GAGAAAGAAGCAAAACTAGCATTAATC 57.717 33.333 0.00 0.00 0.00 1.75
687 695 9.018582 AGAGAAAGAAGCAAAACTAGCATTAAT 57.981 29.630 0.00 0.00 0.00 1.40
688 696 8.292448 CAGAGAAAGAAGCAAAACTAGCATTAA 58.708 33.333 0.00 0.00 0.00 1.40
689 697 7.445402 ACAGAGAAAGAAGCAAAACTAGCATTA 59.555 33.333 0.00 0.00 0.00 1.90
690 698 6.264067 ACAGAGAAAGAAGCAAAACTAGCATT 59.736 34.615 0.00 0.00 0.00 3.56
691 699 5.767168 ACAGAGAAAGAAGCAAAACTAGCAT 59.233 36.000 0.00 0.00 0.00 3.79
692 700 5.126067 ACAGAGAAAGAAGCAAAACTAGCA 58.874 37.500 0.00 0.00 0.00 3.49
693 701 5.681337 ACAGAGAAAGAAGCAAAACTAGC 57.319 39.130 0.00 0.00 0.00 3.42
694 702 7.308049 GGGTAACAGAGAAAGAAGCAAAACTAG 60.308 40.741 0.00 0.00 39.74 2.57
695 703 6.485648 GGGTAACAGAGAAAGAAGCAAAACTA 59.514 38.462 0.00 0.00 39.74 2.24
696 704 5.299531 GGGTAACAGAGAAAGAAGCAAAACT 59.700 40.000 0.00 0.00 39.74 2.66
697 705 5.067283 TGGGTAACAGAGAAAGAAGCAAAAC 59.933 40.000 0.00 0.00 39.74 2.43
698 706 5.197451 TGGGTAACAGAGAAAGAAGCAAAA 58.803 37.500 0.00 0.00 39.74 2.44
699 707 4.787551 TGGGTAACAGAGAAAGAAGCAAA 58.212 39.130 0.00 0.00 39.74 3.68
700 708 4.431416 TGGGTAACAGAGAAAGAAGCAA 57.569 40.909 0.00 0.00 39.74 3.91
701 709 4.202461 ACATGGGTAACAGAGAAAGAAGCA 60.202 41.667 0.00 0.00 39.74 3.91
702 710 4.327680 ACATGGGTAACAGAGAAAGAAGC 58.672 43.478 0.00 0.00 39.74 3.86
703 711 5.551233 TGACATGGGTAACAGAGAAAGAAG 58.449 41.667 0.00 0.00 39.74 2.85
704 712 5.071788 ACTGACATGGGTAACAGAGAAAGAA 59.928 40.000 0.00 0.00 39.74 2.52
705 713 4.593206 ACTGACATGGGTAACAGAGAAAGA 59.407 41.667 0.00 0.00 39.74 2.52
706 714 4.899502 ACTGACATGGGTAACAGAGAAAG 58.100 43.478 0.00 0.00 39.74 2.62
707 715 4.974645 ACTGACATGGGTAACAGAGAAA 57.025 40.909 0.00 0.00 39.74 2.52
708 716 4.466370 CCTACTGACATGGGTAACAGAGAA 59.534 45.833 0.00 0.00 39.74 2.87
709 717 4.023980 CCTACTGACATGGGTAACAGAGA 58.976 47.826 0.00 0.00 39.74 3.10
710 718 3.133003 CCCTACTGACATGGGTAACAGAG 59.867 52.174 0.00 0.00 36.32 3.35
711 719 3.104512 CCCTACTGACATGGGTAACAGA 58.895 50.000 0.00 0.00 36.32 3.41
712 720 3.104512 TCCCTACTGACATGGGTAACAG 58.895 50.000 0.00 0.00 41.58 3.16
713 721 3.104512 CTCCCTACTGACATGGGTAACA 58.895 50.000 0.00 0.00 41.58 2.41
714 722 3.371965 TCTCCCTACTGACATGGGTAAC 58.628 50.000 0.00 0.00 41.58 2.50
715 723 3.769189 TCTCCCTACTGACATGGGTAA 57.231 47.619 0.00 0.00 41.58 2.85
716 724 3.993658 ATCTCCCTACTGACATGGGTA 57.006 47.619 0.00 0.00 41.58 3.69
717 725 2.877154 ATCTCCCTACTGACATGGGT 57.123 50.000 0.00 0.00 41.58 4.51
718 726 5.832539 ATTAATCTCCCTACTGACATGGG 57.167 43.478 0.00 0.00 42.20 4.00
719 727 7.310113 GGAGTATTAATCTCCCTACTGACATGG 60.310 44.444 16.91 0.00 43.90 3.66
720 728 7.575909 CGGAGTATTAATCTCCCTACTGACATG 60.576 44.444 19.71 0.00 46.09 3.21
721 729 6.434652 CGGAGTATTAATCTCCCTACTGACAT 59.565 42.308 19.71 0.00 46.09 3.06
722 730 5.768662 CGGAGTATTAATCTCCCTACTGACA 59.231 44.000 19.71 0.00 46.09 3.58
723 731 5.183522 CCGGAGTATTAATCTCCCTACTGAC 59.816 48.000 19.71 0.71 46.09 3.51
724 732 5.322754 CCGGAGTATTAATCTCCCTACTGA 58.677 45.833 19.71 0.00 46.09 3.41
725 733 4.082136 GCCGGAGTATTAATCTCCCTACTG 60.082 50.000 5.05 10.76 46.09 2.74
726 734 4.087907 GCCGGAGTATTAATCTCCCTACT 58.912 47.826 5.05 7.05 46.09 2.57
727 735 3.195182 GGCCGGAGTATTAATCTCCCTAC 59.805 52.174 5.05 12.97 46.09 3.18
728 736 3.438183 GGCCGGAGTATTAATCTCCCTA 58.562 50.000 5.05 0.00 46.09 3.53
729 737 2.258109 GGCCGGAGTATTAATCTCCCT 58.742 52.381 5.05 3.54 46.09 4.20
730 738 1.278413 GGGCCGGAGTATTAATCTCCC 59.722 57.143 5.05 0.00 46.09 4.30
731 739 1.975680 TGGGCCGGAGTATTAATCTCC 59.024 52.381 5.05 17.42 45.56 3.71
732 740 2.289506 GGTGGGCCGGAGTATTAATCTC 60.290 54.545 5.05 0.00 0.00 2.75
733 741 1.697982 GGTGGGCCGGAGTATTAATCT 59.302 52.381 5.05 0.00 0.00 2.40
734 742 1.697982 AGGTGGGCCGGAGTATTAATC 59.302 52.381 5.05 0.00 40.50 1.75
735 743 1.815757 AGGTGGGCCGGAGTATTAAT 58.184 50.000 5.05 0.00 40.50 1.40
736 744 1.587066 AAGGTGGGCCGGAGTATTAA 58.413 50.000 5.05 0.00 40.50 1.40
737 745 1.210967 CAAAGGTGGGCCGGAGTATTA 59.789 52.381 5.05 0.00 40.50 0.98
738 746 0.034477 CAAAGGTGGGCCGGAGTATT 60.034 55.000 5.05 0.00 40.50 1.89
739 747 1.205460 ACAAAGGTGGGCCGGAGTAT 61.205 55.000 5.05 0.00 40.50 2.12
740 748 1.844289 ACAAAGGTGGGCCGGAGTA 60.844 57.895 5.05 0.00 40.50 2.59
741 749 3.175710 ACAAAGGTGGGCCGGAGT 61.176 61.111 5.05 0.00 40.50 3.85
742 750 2.672996 CACAAAGGTGGGCCGGAG 60.673 66.667 5.05 0.00 41.45 4.63
748 756 3.066380 GCTAATTTTGCACAAAGGTGGG 58.934 45.455 0.00 0.00 45.38 4.61
749 757 3.066380 GGCTAATTTTGCACAAAGGTGG 58.934 45.455 5.25 0.00 45.38 4.61
751 759 3.803368 GCTGGCTAATTTTGCACAAAGGT 60.803 43.478 5.25 0.00 0.00 3.50
752 760 2.738314 GCTGGCTAATTTTGCACAAAGG 59.262 45.455 5.25 0.00 0.00 3.11
753 761 3.391965 TGCTGGCTAATTTTGCACAAAG 58.608 40.909 5.25 0.00 0.00 2.77
754 762 3.465742 TGCTGGCTAATTTTGCACAAA 57.534 38.095 5.25 0.00 0.00 2.83
758 766 3.681593 ATTGTGCTGGCTAATTTTGCA 57.318 38.095 5.25 0.00 0.00 4.08
759 767 4.997565 TCTATTGTGCTGGCTAATTTTGC 58.002 39.130 0.00 0.00 0.00 3.68
760 768 6.032094 CACTCTATTGTGCTGGCTAATTTTG 58.968 40.000 0.00 0.00 0.00 2.44
761 769 5.126061 CCACTCTATTGTGCTGGCTAATTTT 59.874 40.000 0.00 0.00 36.68 1.82
762 770 4.641989 CCACTCTATTGTGCTGGCTAATTT 59.358 41.667 0.00 0.00 36.68 1.82
763 771 4.080356 TCCACTCTATTGTGCTGGCTAATT 60.080 41.667 0.00 0.00 36.68 1.40
764 772 3.455910 TCCACTCTATTGTGCTGGCTAAT 59.544 43.478 0.00 0.00 36.68 1.73
765 773 2.837591 TCCACTCTATTGTGCTGGCTAA 59.162 45.455 0.00 0.00 36.68 3.09
766 774 2.168521 GTCCACTCTATTGTGCTGGCTA 59.831 50.000 0.00 0.00 36.68 3.93
767 775 1.065854 GTCCACTCTATTGTGCTGGCT 60.066 52.381 0.00 0.00 36.68 4.75
768 776 1.373570 GTCCACTCTATTGTGCTGGC 58.626 55.000 0.00 0.00 36.68 4.85
769 777 1.645034 CGTCCACTCTATTGTGCTGG 58.355 55.000 0.00 0.00 36.68 4.85
770 778 1.204704 TCCGTCCACTCTATTGTGCTG 59.795 52.381 0.00 0.00 36.68 4.41
771 779 1.478510 CTCCGTCCACTCTATTGTGCT 59.521 52.381 0.00 0.00 36.68 4.40
772 780 1.476891 TCTCCGTCCACTCTATTGTGC 59.523 52.381 0.00 0.00 36.68 4.57
773 781 2.755655 ACTCTCCGTCCACTCTATTGTG 59.244 50.000 0.00 0.00 37.66 3.33
774 782 3.088789 ACTCTCCGTCCACTCTATTGT 57.911 47.619 0.00 0.00 0.00 2.71
775 783 3.429547 CCAACTCTCCGTCCACTCTATTG 60.430 52.174 0.00 0.00 0.00 1.90
776 784 2.761208 CCAACTCTCCGTCCACTCTATT 59.239 50.000 0.00 0.00 0.00 1.73
777 785 2.379972 CCAACTCTCCGTCCACTCTAT 58.620 52.381 0.00 0.00 0.00 1.98
778 786 1.835494 CCAACTCTCCGTCCACTCTA 58.165 55.000 0.00 0.00 0.00 2.43
779 787 1.536943 GCCAACTCTCCGTCCACTCT 61.537 60.000 0.00 0.00 0.00 3.24
780 788 1.079750 GCCAACTCTCCGTCCACTC 60.080 63.158 0.00 0.00 0.00 3.51
781 789 1.534235 AGCCAACTCTCCGTCCACT 60.534 57.895 0.00 0.00 0.00 4.00
782 790 1.079750 GAGCCAACTCTCCGTCCAC 60.080 63.158 0.00 0.00 40.03 4.02
783 791 2.636412 CGAGCCAACTCTCCGTCCA 61.636 63.158 0.00 0.00 41.09 4.02
784 792 1.668101 ATCGAGCCAACTCTCCGTCC 61.668 60.000 0.00 0.00 41.09 4.79
785 793 0.526524 CATCGAGCCAACTCTCCGTC 60.527 60.000 0.00 0.00 41.09 4.79
786 794 1.251527 ACATCGAGCCAACTCTCCGT 61.252 55.000 0.00 0.00 41.09 4.69
787 795 0.803768 CACATCGAGCCAACTCTCCG 60.804 60.000 0.00 0.00 41.09 4.63
788 796 0.532573 TCACATCGAGCCAACTCTCC 59.467 55.000 0.00 0.00 41.09 3.71
789 797 1.919918 CTCACATCGAGCCAACTCTC 58.080 55.000 0.00 0.00 41.09 3.20
798 806 2.208431 GAAATCAGGGCTCACATCGAG 58.792 52.381 0.00 0.00 45.37 4.04
799 807 1.134401 GGAAATCAGGGCTCACATCGA 60.134 52.381 0.00 0.00 0.00 3.59
800 808 1.134280 AGGAAATCAGGGCTCACATCG 60.134 52.381 0.00 0.00 0.00 3.84
801 809 2.570135 GAGGAAATCAGGGCTCACATC 58.430 52.381 0.00 0.00 0.00 3.06
802 810 1.213926 GGAGGAAATCAGGGCTCACAT 59.786 52.381 0.00 0.00 0.00 3.21
803 811 0.620556 GGAGGAAATCAGGGCTCACA 59.379 55.000 0.00 0.00 0.00 3.58
804 812 0.620556 TGGAGGAAATCAGGGCTCAC 59.379 55.000 0.00 0.00 0.00 3.51
805 813 1.600058 ATGGAGGAAATCAGGGCTCA 58.400 50.000 0.00 0.00 0.00 4.26
806 814 2.580962 GAATGGAGGAAATCAGGGCTC 58.419 52.381 0.00 0.00 0.00 4.70
807 815 1.216427 GGAATGGAGGAAATCAGGGCT 59.784 52.381 0.00 0.00 0.00 5.19
808 816 1.216427 AGGAATGGAGGAAATCAGGGC 59.784 52.381 0.00 0.00 0.00 5.19
809 817 2.941480 CAGGAATGGAGGAAATCAGGG 58.059 52.381 0.00 0.00 0.00 4.45
810 818 2.305009 GCAGGAATGGAGGAAATCAGG 58.695 52.381 0.00 0.00 0.00 3.86
811 819 2.091994 AGGCAGGAATGGAGGAAATCAG 60.092 50.000 0.00 0.00 0.00 2.90
812 820 1.925255 AGGCAGGAATGGAGGAAATCA 59.075 47.619 0.00 0.00 0.00 2.57
813 821 2.744352 AGGCAGGAATGGAGGAAATC 57.256 50.000 0.00 0.00 0.00 2.17
814 822 2.158755 CGTAGGCAGGAATGGAGGAAAT 60.159 50.000 0.00 0.00 0.00 2.17
815 823 1.209504 CGTAGGCAGGAATGGAGGAAA 59.790 52.381 0.00 0.00 0.00 3.13
816 824 0.830648 CGTAGGCAGGAATGGAGGAA 59.169 55.000 0.00 0.00 0.00 3.36
817 825 1.048724 CCGTAGGCAGGAATGGAGGA 61.049 60.000 0.00 0.00 46.14 3.71
818 826 1.447643 CCGTAGGCAGGAATGGAGG 59.552 63.158 0.00 0.00 46.14 4.30
829 837 7.941101 ATGGTGTTACAATCCATCCGTAGGC 62.941 48.000 2.14 0.00 39.49 3.93
830 838 4.444306 ATGGTGTTACAATCCATCCGTAGG 60.444 45.833 2.14 0.00 40.47 3.18
831 839 4.131649 TGGTGTTACAATCCATCCGTAG 57.868 45.455 0.00 0.00 0.00 3.51
832 840 4.162509 TCATGGTGTTACAATCCATCCGTA 59.837 41.667 4.74 0.00 39.57 4.02
833 841 3.054728 TCATGGTGTTACAATCCATCCGT 60.055 43.478 4.74 0.00 39.57 4.69
834 842 3.540617 TCATGGTGTTACAATCCATCCG 58.459 45.455 4.74 0.00 39.57 4.18
835 843 7.448161 TGATAATCATGGTGTTACAATCCATCC 59.552 37.037 4.74 0.00 39.57 3.51
836 844 8.394971 TGATAATCATGGTGTTACAATCCATC 57.605 34.615 4.74 0.00 39.57 3.51
837 845 8.000709 ACTGATAATCATGGTGTTACAATCCAT 58.999 33.333 2.14 2.14 41.88 3.41
838 846 7.345691 ACTGATAATCATGGTGTTACAATCCA 58.654 34.615 0.00 0.00 35.64 3.41
839 847 7.807977 ACTGATAATCATGGTGTTACAATCC 57.192 36.000 0.00 0.00 0.00 3.01
852 860 9.866655 TGGGAGCTTTTATTAACTGATAATCAT 57.133 29.630 0.00 0.00 35.77 2.45
853 861 9.866655 ATGGGAGCTTTTATTAACTGATAATCA 57.133 29.630 0.00 0.00 35.77 2.57
858 866 9.003658 CGAATATGGGAGCTTTTATTAACTGAT 57.996 33.333 0.00 0.00 0.00 2.90
859 867 8.208224 TCGAATATGGGAGCTTTTATTAACTGA 58.792 33.333 0.00 0.00 0.00 3.41
860 868 8.283291 GTCGAATATGGGAGCTTTTATTAACTG 58.717 37.037 0.00 0.00 0.00 3.16
861 869 7.170998 CGTCGAATATGGGAGCTTTTATTAACT 59.829 37.037 0.00 0.00 0.00 2.24
862 870 7.288672 CGTCGAATATGGGAGCTTTTATTAAC 58.711 38.462 0.00 0.00 0.00 2.01
863 871 6.073440 GCGTCGAATATGGGAGCTTTTATTAA 60.073 38.462 0.00 0.00 0.00 1.40
864 872 5.407387 GCGTCGAATATGGGAGCTTTTATTA 59.593 40.000 0.00 0.00 0.00 0.98
865 873 4.213482 GCGTCGAATATGGGAGCTTTTATT 59.787 41.667 0.00 0.00 0.00 1.40
866 874 3.746492 GCGTCGAATATGGGAGCTTTTAT 59.254 43.478 0.00 0.00 0.00 1.40
867 875 3.128349 GCGTCGAATATGGGAGCTTTTA 58.872 45.455 0.00 0.00 0.00 1.52
868 876 1.940613 GCGTCGAATATGGGAGCTTTT 59.059 47.619 0.00 0.00 0.00 2.27
869 877 1.134521 TGCGTCGAATATGGGAGCTTT 60.135 47.619 0.00 0.00 0.00 3.51
870 878 0.464036 TGCGTCGAATATGGGAGCTT 59.536 50.000 0.00 0.00 0.00 3.74
871 879 0.464036 TTGCGTCGAATATGGGAGCT 59.536 50.000 0.00 0.00 0.00 4.09
872 880 1.295792 TTTGCGTCGAATATGGGAGC 58.704 50.000 0.00 0.00 0.00 4.70
953 961 5.039333 GCAAAGTGGACGAACTATACGTAT 58.961 41.667 13.54 13.54 43.97 3.06
960 968 0.947180 GGCGCAAAGTGGACGAACTA 60.947 55.000 10.83 0.00 0.00 2.24
1182 1190 4.807039 GGCGCGCCGAGGAAGTTA 62.807 66.667 37.24 0.00 0.00 2.24
1326 1334 0.035458 CCTTGAACGCCTCCTTGAGT 59.965 55.000 0.00 0.00 0.00 3.41
1435 1443 2.634639 TGGCTGGAGTAGGAGGTTAA 57.365 50.000 0.00 0.00 0.00 2.01
1561 1867 7.209475 CCTTGTTTGTTAGGATTTGTCATGTT 58.791 34.615 0.00 0.00 33.13 2.71
1807 2120 9.249053 ACCATCGATATGATCTCAGTTTATAGT 57.751 33.333 0.00 0.00 34.13 2.12
1808 2121 9.729023 GACCATCGATATGATCTCAGTTTATAG 57.271 37.037 0.00 0.00 34.13 1.31
1809 2122 9.243105 TGACCATCGATATGATCTCAGTTTATA 57.757 33.333 0.00 0.00 34.13 0.98
1810 2123 8.127150 TGACCATCGATATGATCTCAGTTTAT 57.873 34.615 0.00 0.00 34.13 1.40
1811 2124 7.524717 TGACCATCGATATGATCTCAGTTTA 57.475 36.000 0.00 0.00 34.13 2.01
1812 2125 6.410942 TGACCATCGATATGATCTCAGTTT 57.589 37.500 0.00 0.00 34.13 2.66
1813 2126 6.602410 ATGACCATCGATATGATCTCAGTT 57.398 37.500 0.00 0.00 34.13 3.16
1819 2132 8.484641 AACATACAATGACCATCGATATGATC 57.515 34.615 0.00 0.00 34.13 2.92
1834 2147 1.942657 CCTCCGGCTGAACATACAATG 59.057 52.381 0.00 0.00 0.00 2.82
1865 2178 1.671054 CACCCAGCGGTTGATCGTT 60.671 57.895 0.00 0.00 42.04 3.85
2025 2338 2.027625 CGTCAAGCCGGTGGAACTC 61.028 63.158 1.90 0.00 36.74 3.01
2054 2367 0.037697 TCGTACATGAACGCTGCCTT 60.038 50.000 0.00 0.00 42.56 4.35
2206 2521 2.125912 CCCAGAGGCGTCTTGACG 60.126 66.667 17.53 17.53 0.00 4.35
2230 2545 1.379916 CATGGAGAACTGGGTGGCA 59.620 57.895 0.00 0.00 0.00 4.92
2356 2671 1.632589 ACTTGGGGAGGTTGATTTGC 58.367 50.000 0.00 0.00 0.00 3.68
2404 2719 2.044555 CAGCCGACGGAGGTCACTA 61.045 63.158 20.50 0.00 43.61 2.74
2425 2740 2.659610 GAGAAGGGCAGCGTGAGT 59.340 61.111 0.00 0.00 0.00 3.41
2490 2805 2.804828 CTTGGTCAGGAAGGTCGGCC 62.805 65.000 0.00 0.00 0.00 6.13
2615 2930 2.884207 GAACGGATGGTCGGCGAC 60.884 66.667 30.72 30.72 0.00 5.19
2620 2935 0.665068 TGAACGTGAACGGATGGTCG 60.665 55.000 7.86 0.00 44.95 4.79
2623 2938 1.720805 TGATGAACGTGAACGGATGG 58.279 50.000 7.86 0.00 44.95 3.51
2656 2971 0.458543 CGAACACGATCACCCCTGAG 60.459 60.000 0.00 0.00 0.00 3.35
2691 3006 1.279271 GTGATCACTTGCAGGTAGGGT 59.721 52.381 18.83 0.00 0.00 4.34
2722 3037 2.927553 AAAGAAATAGCCTGCGCTTG 57.072 45.000 9.73 0.00 45.55 4.01
2744 3059 3.922240 GGTCGATTTAAGTTCAGTACGCA 59.078 43.478 0.00 0.00 0.00 5.24
2745 3060 3.922240 TGGTCGATTTAAGTTCAGTACGC 59.078 43.478 0.00 0.00 0.00 4.42
2746 3061 7.925703 ATATGGTCGATTTAAGTTCAGTACG 57.074 36.000 0.00 0.00 0.00 3.67
2748 3063 9.454585 CGTAATATGGTCGATTTAAGTTCAGTA 57.545 33.333 0.00 0.00 0.00 2.74
2749 3064 7.977853 ACGTAATATGGTCGATTTAAGTTCAGT 59.022 33.333 0.00 0.00 0.00 3.41
2750 3065 8.348983 ACGTAATATGGTCGATTTAAGTTCAG 57.651 34.615 0.00 0.00 0.00 3.02
2751 3066 8.597227 CAACGTAATATGGTCGATTTAAGTTCA 58.403 33.333 0.00 0.00 28.40 3.18
2752 3067 8.598075 ACAACGTAATATGGTCGATTTAAGTTC 58.402 33.333 0.00 0.00 28.40 3.01
2774 3089 7.869429 ACCATCAATTCAGATTTCAGAAACAAC 59.131 33.333 0.00 0.00 0.00 3.32
2777 3092 7.596494 TCACCATCAATTCAGATTTCAGAAAC 58.404 34.615 0.00 0.00 0.00 2.78
2833 3148 7.288672 CAGTTACTGGTATCAACGAAGAAAAC 58.711 38.462 4.14 0.00 0.00 2.43
2885 3200 3.994853 GGTGTTTGCTGGGCCTGC 61.995 66.667 26.63 26.63 0.00 4.85
2889 3204 3.365265 CCTCGGTGTTTGCTGGGC 61.365 66.667 0.00 0.00 0.00 5.36
2905 3220 3.014623 GCCTGTGTTAACCCTATTCACC 58.985 50.000 2.48 0.00 0.00 4.02
2906 3221 3.014623 GGCCTGTGTTAACCCTATTCAC 58.985 50.000 2.48 0.00 0.00 3.18
2912 3227 2.033602 GCGGCCTGTGTTAACCCT 59.966 61.111 0.00 0.00 0.00 4.34
2917 3232 1.153529 CGTATGGCGGCCTGTGTTA 60.154 57.895 21.46 0.00 36.85 2.41
2926 3241 1.885850 GCAAGGGTACGTATGGCGG 60.886 63.158 0.00 0.00 46.52 6.13
2933 3248 1.274447 GGTAGTGAAGCAAGGGTACGT 59.726 52.381 0.00 0.00 0.00 3.57
2934 3249 1.549170 AGGTAGTGAAGCAAGGGTACG 59.451 52.381 0.00 0.00 0.00 3.67
2983 3349 7.678194 TCTTGTTCAATTCTTTTAACTTGCG 57.322 32.000 0.00 0.00 0.00 4.85
2991 3357 9.736023 GTCACTAACATCTTGTTCAATTCTTTT 57.264 29.630 0.00 0.00 40.22 2.27
2992 3358 8.902806 TGTCACTAACATCTTGTTCAATTCTTT 58.097 29.630 0.00 0.00 40.22 2.52
3000 3366 6.223852 TCCTCTTGTCACTAACATCTTGTTC 58.776 40.000 0.00 0.00 40.22 3.18
3022 3388 5.678955 ACAGTACTTGATAGTTCCCTTCC 57.321 43.478 0.00 0.00 35.78 3.46
3081 3447 4.578601 CCGTATGAAGAAATTGAACGCTC 58.421 43.478 0.00 0.00 0.00 5.03
3090 3456 2.684001 TGGACGCCGTATGAAGAAAT 57.316 45.000 0.00 0.00 0.00 2.17
3094 3460 3.454375 ACTATTTGGACGCCGTATGAAG 58.546 45.455 0.00 0.00 0.00 3.02
3104 3470 6.376177 TGCGTATACAGATACTATTTGGACG 58.624 40.000 3.32 0.00 36.53 4.79
3108 3474 9.856488 ACCTAATGCGTATACAGATACTATTTG 57.144 33.333 3.32 0.00 36.53 2.32
3117 3483 4.146564 TGCCTACCTAATGCGTATACAGA 58.853 43.478 3.32 0.00 0.00 3.41
3121 3527 4.342951 AGTGTTGCCTACCTAATGCGTATA 59.657 41.667 0.00 0.00 0.00 1.47
3148 3554 1.143183 GCTGCCAGGGATTTGCATG 59.857 57.895 0.00 0.00 33.97 4.06
3149 3555 2.420568 CGCTGCCAGGGATTTGCAT 61.421 57.895 1.94 0.00 33.97 3.96
3157 3563 3.673484 CCAAACACGCTGCCAGGG 61.673 66.667 7.29 7.29 0.00 4.45
3161 3567 1.791103 TTGTAGCCAAACACGCTGCC 61.791 55.000 0.00 0.00 38.08 4.85
3167 3573 4.846779 TTTCTCCATTGTAGCCAAACAC 57.153 40.909 0.00 0.00 33.44 3.32
3188 3594 4.263949 CCACCTCTAAACTTCCATTCCCTT 60.264 45.833 0.00 0.00 0.00 3.95
3224 3630 1.215423 ACCAACCTCCCATGCCTAATC 59.785 52.381 0.00 0.00 0.00 1.75
3270 3676 8.875168 AGATTCCTCCTACTAATTCCAACATAG 58.125 37.037 0.00 0.00 0.00 2.23
3318 3725 2.435372 TCTCTTCTCTGCTCTCTCCC 57.565 55.000 0.00 0.00 0.00 4.30
3344 3751 1.377536 GAGTTGAGGAGGCTGATTGC 58.622 55.000 0.00 0.00 41.94 3.56
3365 4023 3.896888 TCCACTGTTTAGTCGGAGGTTAA 59.103 43.478 0.00 0.00 34.07 2.01
3374 4032 8.779354 AGAGACATTTAATCCACTGTTTAGTC 57.221 34.615 0.00 0.00 34.07 2.59
3377 4035 9.444600 GGTAAGAGACATTTAATCCACTGTTTA 57.555 33.333 0.00 0.00 0.00 2.01
3383 4041 6.002653 AGGGGTAAGAGACATTTAATCCAC 57.997 41.667 0.00 0.00 0.00 4.02
3399 4064 6.518200 GCACAAAATGAGAATTTGAGGGGTAA 60.518 38.462 6.05 0.00 39.56 2.85
3480 4145 8.090214 CCAACACTGTTGGATTATCAAATCTTT 58.910 33.333 30.16 0.00 42.06 2.52
3486 4151 3.190327 CGCCAACACTGTTGGATTATCAA 59.810 43.478 35.60 0.00 42.06 2.57
3488 4153 2.477863 GCGCCAACACTGTTGGATTATC 60.478 50.000 35.60 20.43 42.06 1.75
3490 4155 0.878416 GCGCCAACACTGTTGGATTA 59.122 50.000 35.60 0.00 42.06 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.