Multiple sequence alignment - TraesCS1B01G119600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G119600 chr1B 100.000 2954 0 0 1 2954 141844006 141846959 0.000000e+00 5456
1 TraesCS1B01G119600 chr1B 98.199 1999 30 5 1 1997 142036516 142038510 0.000000e+00 3487
2 TraesCS1B01G119600 chr1B 97.300 2000 47 6 1 1997 142092775 142094770 0.000000e+00 3387
3 TraesCS1B01G119600 chr1B 95.799 1214 44 6 14 1223 142025682 142026892 0.000000e+00 1953
4 TraesCS1B01G119600 chr1B 87.803 1607 89 41 694 2246 142134785 142133232 0.000000e+00 1783
5 TraesCS1B01G119600 chr1B 94.288 1103 61 2 895 1997 142086346 142087446 0.000000e+00 1687
6 TraesCS1B01G119600 chr1B 96.026 151 6 0 2353 2503 142038971 142039121 2.270000e-61 246
7 TraesCS1B01G119600 chr1B 83.142 261 28 9 2194 2445 142102876 142103129 1.070000e-54 224
8 TraesCS1B01G119600 chr1B 90.667 75 5 2 2194 2266 142102773 142102847 6.740000e-17 99
9 TraesCS1B01G119600 chr1D 93.340 2012 97 16 1 1997 87902686 87904675 0.000000e+00 2939
10 TraesCS1B01G119600 chr1D 88.009 1768 101 47 704 2419 88282851 88281143 0.000000e+00 1988
11 TraesCS1B01G119600 chr1D 91.935 744 43 9 704 1443 88244583 88243853 0.000000e+00 1026
12 TraesCS1B01G119600 chr1D 92.174 690 39 11 1 682 88184127 88184809 0.000000e+00 961
13 TraesCS1B01G119600 chr1D 87.093 891 48 22 1558 2401 88243854 88242984 0.000000e+00 946
14 TraesCS1B01G119600 chr1D 82.026 701 94 23 1 680 88276143 88275454 4.270000e-158 568
15 TraesCS1B01G119600 chr1D 83.245 376 29 18 1 370 87896537 87896884 6.150000e-82 315
16 TraesCS1B01G119600 chr1D 86.975 238 19 6 2194 2428 88215816 88216044 1.050000e-64 257
17 TraesCS1B01G119600 chr1D 92.715 151 9 1 2353 2503 87905146 87905294 1.780000e-52 217
18 TraesCS1B01G119600 chr1D 95.455 132 5 1 1 131 87902471 87902602 2.980000e-50 209
19 TraesCS1B01G119600 chr1D 80.905 199 30 4 1 191 88181632 88181830 1.830000e-32 150
20 TraesCS1B01G119600 chr1D 81.457 151 24 4 2252 2401 271792618 271792471 1.440000e-23 121
21 TraesCS1B01G119600 chr1D 95.312 64 3 0 2194 2257 87905034 87905097 5.210000e-18 102
22 TraesCS1B01G119600 chr1A 89.263 1723 116 33 697 2401 84796957 84795286 0.000000e+00 2093
23 TraesCS1B01G119600 chr1A 88.649 1621 106 31 776 2378 85006766 85005206 0.000000e+00 1903
24 TraesCS1B01G119600 chr1A 94.545 715 39 0 1278 1992 84484045 84484759 0.000000e+00 1105
25 TraesCS1B01G119600 chr1A 94.334 706 40 0 1287 1992 84621251 84621956 0.000000e+00 1083
26 TraesCS1B01G119600 chr1A 86.275 306 32 10 210 510 85007348 85007048 1.020000e-84 324
27 TraesCS1B01G119600 chr1A 89.020 255 25 1 2194 2445 84485130 84485384 2.210000e-81 313
28 TraesCS1B01G119600 chr1A 89.020 255 25 1 2194 2445 84622328 84622582 2.210000e-81 313
29 TraesCS1B01G119600 chr1A 85.714 161 9 11 704 860 84621094 84621244 1.100000e-34 158
30 TraesCS1B01G119600 chr1A 93.421 76 3 1 704 777 84483853 84483928 8.650000e-21 111
31 TraesCS1B01G119600 chr1A 92.105 76 4 1 704 777 84055951 84056026 4.030000e-19 106
32 TraesCS1B01G119600 chr1A 89.157 83 7 1 697 777 84616123 84616205 5.210000e-18 102
33 TraesCS1B01G119600 chr4D 90.212 1553 81 25 892 2401 464798073 464796549 0.000000e+00 1960
34 TraesCS1B01G119600 chr3B 95.258 970 45 1 1028 1997 535705558 535704590 0.000000e+00 1535
35 TraesCS1B01G119600 chr3B 92.598 716 39 10 1 706 535709406 535708695 0.000000e+00 1016
36 TraesCS1B01G119600 chr3B 96.909 453 13 1 2503 2954 256260820 256261272 0.000000e+00 758
37 TraesCS1B01G119600 chr3B 92.177 294 17 3 744 1031 535708692 535708399 7.620000e-111 411
38 TraesCS1B01G119600 chr3B 93.421 152 7 2 2353 2503 535704136 535703987 3.830000e-54 222
39 TraesCS1B01G119600 chr7B 96.468 453 15 1 2503 2954 103870590 103871042 0.000000e+00 747
40 TraesCS1B01G119600 chr7B 96.247 453 16 1 2503 2954 358598946 358598494 0.000000e+00 741
41 TraesCS1B01G119600 chr5B 96.468 453 14 2 2503 2954 444587095 444587546 0.000000e+00 747
42 TraesCS1B01G119600 chr2B 96.468 453 15 1 2503 2954 71077386 71077838 0.000000e+00 747
43 TraesCS1B01G119600 chr2B 96.256 454 16 1 2502 2954 523231905 523231452 0.000000e+00 743
44 TraesCS1B01G119600 chr2B 95.861 459 17 2 2497 2954 71071911 71072368 0.000000e+00 741
45 TraesCS1B01G119600 chr6B 96.460 452 15 1 2503 2953 6822104 6821653 0.000000e+00 745
46 TraesCS1B01G119600 chr4A 96.247 453 15 2 2503 2954 676789735 676790186 0.000000e+00 741


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G119600 chr1B 141844006 141846959 2953 False 5456.000000 5456 100.000000 1 2954 1 chr1B.!!$F1 2953
1 TraesCS1B01G119600 chr1B 142092775 142094770 1995 False 3387.000000 3387 97.300000 1 1997 1 chr1B.!!$F4 1996
2 TraesCS1B01G119600 chr1B 142025682 142026892 1210 False 1953.000000 1953 95.799000 14 1223 1 chr1B.!!$F2 1209
3 TraesCS1B01G119600 chr1B 142036516 142039121 2605 False 1866.500000 3487 97.112500 1 2503 2 chr1B.!!$F5 2502
4 TraesCS1B01G119600 chr1B 142133232 142134785 1553 True 1783.000000 1783 87.803000 694 2246 1 chr1B.!!$R1 1552
5 TraesCS1B01G119600 chr1B 142086346 142087446 1100 False 1687.000000 1687 94.288000 895 1997 1 chr1B.!!$F3 1102
6 TraesCS1B01G119600 chr1D 88281143 88282851 1708 True 1988.000000 1988 88.009000 704 2419 1 chr1D.!!$R2 1715
7 TraesCS1B01G119600 chr1D 88242984 88244583 1599 True 986.000000 1026 89.514000 704 2401 2 chr1D.!!$R4 1697
8 TraesCS1B01G119600 chr1D 87902471 87905294 2823 False 866.750000 2939 94.205500 1 2503 4 chr1D.!!$F3 2502
9 TraesCS1B01G119600 chr1D 88275454 88276143 689 True 568.000000 568 82.026000 1 680 1 chr1D.!!$R1 679
10 TraesCS1B01G119600 chr1D 88181632 88184809 3177 False 555.500000 961 86.539500 1 682 2 chr1D.!!$F4 681
11 TraesCS1B01G119600 chr1A 84795286 84796957 1671 True 2093.000000 2093 89.263000 697 2401 1 chr1A.!!$R1 1704
12 TraesCS1B01G119600 chr1A 85005206 85007348 2142 True 1113.500000 1903 87.462000 210 2378 2 chr1A.!!$R2 2168
13 TraesCS1B01G119600 chr1A 84621094 84622582 1488 False 518.000000 1083 89.689333 704 2445 3 chr1A.!!$F4 1741
14 TraesCS1B01G119600 chr1A 84483853 84485384 1531 False 509.666667 1105 92.328667 704 2445 3 chr1A.!!$F3 1741
15 TraesCS1B01G119600 chr4D 464796549 464798073 1524 True 1960.000000 1960 90.212000 892 2401 1 chr4D.!!$R1 1509
16 TraesCS1B01G119600 chr3B 535703987 535709406 5419 True 796.000000 1535 93.363500 1 2503 4 chr3B.!!$R1 2502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 3596 1.510383 CTGTCCCTGCGACTGAGAG 59.49 63.158 0.0 0.0 41.66 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2601 8671 0.025513 GCTTGCTGTCTTGCGTATCG 59.974 55.0 0.0 0.0 35.36 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
414 3224 5.899547 AGAAAAGGGGAAAAGAAGTGTTCAT 59.100 36.000 0.00 0.00 0.00 2.57
613 3442 5.269189 AGGGAACAAAAAGGAGAGAAAACA 58.731 37.500 0.00 0.00 0.00 2.83
762 3595 2.640302 GCTGTCCCTGCGACTGAGA 61.640 63.158 3.86 0.00 41.66 3.27
763 3596 1.510383 CTGTCCCTGCGACTGAGAG 59.490 63.158 0.00 0.00 41.66 3.20
768 3601 1.527433 CCCTGCGACTGAGAGTCACA 61.527 60.000 4.69 0.00 45.30 3.58
957 3826 4.096003 CACACGAATCCCCGCCCT 62.096 66.667 0.00 0.00 0.00 5.19
1425 7139 1.069765 GACCCGCGTGATGATGGAT 59.930 57.895 4.92 0.00 0.00 3.41
2043 7810 7.816031 TGTACTGTAGTAATTAGTTGCAGGAAC 59.184 37.037 19.72 17.52 31.52 3.62
2074 7842 1.141053 GGGTTCCTCGCCATGTAATCT 59.859 52.381 0.00 0.00 0.00 2.40
2129 7938 7.765307 ACATTACATGATGGAGCTAAAGTTTG 58.235 34.615 0.00 0.00 0.00 2.93
2132 7941 6.259550 ACATGATGGAGCTAAAGTTTGAAC 57.740 37.500 0.00 0.00 0.00 3.18
2134 7943 4.385825 TGATGGAGCTAAAGTTTGAACGT 58.614 39.130 0.00 0.00 0.00 3.99
2136 7945 5.298276 TGATGGAGCTAAAGTTTGAACGTTT 59.702 36.000 0.46 0.00 32.92 3.60
2137 7946 5.164606 TGGAGCTAAAGTTTGAACGTTTC 57.835 39.130 0.46 0.00 32.92 2.78
2138 7947 4.879545 TGGAGCTAAAGTTTGAACGTTTCT 59.120 37.500 0.46 0.00 32.92 2.52
2139 7948 5.007332 TGGAGCTAAAGTTTGAACGTTTCTC 59.993 40.000 0.46 7.70 32.92 2.87
2189 8159 3.149196 CTGCTAAAGGCCAAGTTTCTGA 58.851 45.455 5.01 0.00 40.92 3.27
2190 8160 3.561143 TGCTAAAGGCCAAGTTTCTGAA 58.439 40.909 5.01 0.00 40.92 3.02
2191 8161 4.151883 TGCTAAAGGCCAAGTTTCTGAAT 58.848 39.130 5.01 0.00 40.92 2.57
2192 8162 5.321102 TGCTAAAGGCCAAGTTTCTGAATA 58.679 37.500 5.01 0.00 40.92 1.75
2204 8174 8.359642 CCAAGTTTCTGAATAAATCTGGTTGAA 58.640 33.333 0.00 0.00 0.00 2.69
2290 8346 7.019774 TGCATGAACTAAATAGATGTGAAGC 57.980 36.000 0.00 0.00 0.00 3.86
2291 8347 6.132056 GCATGAACTAAATAGATGTGAAGCG 58.868 40.000 0.00 0.00 0.00 4.68
2311 8367 3.000177 GCGCAACGAAGAAAAACAAATGT 60.000 39.130 0.30 0.00 0.00 2.71
2313 8369 5.275974 GCGCAACGAAGAAAAACAAATGTTA 60.276 36.000 0.30 0.00 37.25 2.41
2314 8370 6.687655 CGCAACGAAGAAAAACAAATGTTAA 58.312 32.000 0.00 0.00 37.25 2.01
2315 8371 7.167481 CGCAACGAAGAAAAACAAATGTTAAA 58.833 30.769 0.00 0.00 37.25 1.52
2316 8372 7.843686 CGCAACGAAGAAAAACAAATGTTAAAT 59.156 29.630 0.00 0.00 37.25 1.40
2317 8373 8.932963 GCAACGAAGAAAAACAAATGTTAAATG 58.067 29.630 0.00 0.00 37.25 2.32
2318 8374 9.965748 CAACGAAGAAAAACAAATGTTAAATGT 57.034 25.926 0.00 0.00 37.25 2.71
2320 8376 9.581099 ACGAAGAAAAACAAATGTTAAATGTCT 57.419 25.926 0.00 0.00 37.25 3.41
2503 8573 9.868277 CTATAGATAATTCTTGGAAGCCTACTG 57.132 37.037 0.00 0.00 33.17 2.74
2504 8574 6.567602 AGATAATTCTTGGAAGCCTACTGT 57.432 37.500 0.00 0.00 0.00 3.55
2505 8575 6.963322 AGATAATTCTTGGAAGCCTACTGTT 58.037 36.000 0.00 0.00 0.00 3.16
2506 8576 6.825721 AGATAATTCTTGGAAGCCTACTGTTG 59.174 38.462 0.00 0.00 0.00 3.33
2507 8577 4.640771 ATTCTTGGAAGCCTACTGTTGA 57.359 40.909 0.00 0.00 0.00 3.18
2508 8578 3.402628 TCTTGGAAGCCTACTGTTGAC 57.597 47.619 0.00 0.00 0.00 3.18
2509 8579 2.069273 CTTGGAAGCCTACTGTTGACG 58.931 52.381 0.00 0.00 0.00 4.35
2510 8580 0.320421 TGGAAGCCTACTGTTGACGC 60.320 55.000 0.00 0.00 0.00 5.19
2511 8581 0.037232 GGAAGCCTACTGTTGACGCT 60.037 55.000 0.00 0.00 0.00 5.07
2512 8582 1.071605 GAAGCCTACTGTTGACGCTG 58.928 55.000 0.00 0.00 0.00 5.18
2513 8583 0.320771 AAGCCTACTGTTGACGCTGG 60.321 55.000 0.00 0.00 0.00 4.85
2514 8584 1.185618 AGCCTACTGTTGACGCTGGA 61.186 55.000 0.00 0.00 0.00 3.86
2515 8585 0.320421 GCCTACTGTTGACGCTGGAA 60.320 55.000 0.00 0.00 0.00 3.53
2516 8586 1.429463 CCTACTGTTGACGCTGGAAC 58.571 55.000 0.00 0.00 0.00 3.62
2517 8587 1.060713 CTACTGTTGACGCTGGAACG 58.939 55.000 0.00 0.00 39.50 3.95
2518 8588 0.942410 TACTGTTGACGCTGGAACGC 60.942 55.000 0.00 0.00 36.19 4.84
2525 8595 4.059459 CGCTGGAACGCGTCACAC 62.059 66.667 14.44 8.63 43.62 3.82
2526 8596 4.059459 GCTGGAACGCGTCACACG 62.059 66.667 14.44 9.75 45.88 4.49
2527 8597 2.354188 CTGGAACGCGTCACACGA 60.354 61.111 14.44 1.16 46.05 4.35
2528 8598 1.947146 CTGGAACGCGTCACACGAA 60.947 57.895 14.44 0.00 46.05 3.85
2529 8599 2.142418 CTGGAACGCGTCACACGAAC 62.142 60.000 14.44 0.00 46.05 3.95
2530 8600 2.232296 GGAACGCGTCACACGAACA 61.232 57.895 14.44 0.00 46.05 3.18
2531 8601 1.084478 GAACGCGTCACACGAACAC 60.084 57.895 14.44 0.00 46.05 3.32
2532 8602 1.744811 GAACGCGTCACACGAACACA 61.745 55.000 14.44 0.00 46.05 3.72
2533 8603 1.149361 AACGCGTCACACGAACACAT 61.149 50.000 14.44 0.00 46.05 3.21
2534 8604 1.127817 CGCGTCACACGAACACATC 59.872 57.895 0.00 0.00 46.05 3.06
2547 8617 4.827481 ACATCGATGTGTACCCGC 57.173 55.556 29.49 0.00 40.03 6.13
2548 8618 1.226859 ACATCGATGTGTACCCGCG 60.227 57.895 29.49 0.00 40.03 6.46
2549 8619 1.949133 CATCGATGTGTACCCGCGG 60.949 63.158 21.04 21.04 0.00 6.46
2550 8620 3.785189 ATCGATGTGTACCCGCGGC 62.785 63.158 22.85 7.02 0.00 6.53
2566 8636 4.959596 GCGCCGAGGGAGATGCTC 62.960 72.222 0.00 0.00 0.00 4.26
2576 8646 4.606071 AGATGCTCCGCAACTCAC 57.394 55.556 0.00 0.00 43.62 3.51
2577 8647 1.673477 AGATGCTCCGCAACTCACA 59.327 52.632 0.00 0.00 43.62 3.58
2578 8648 0.671781 AGATGCTCCGCAACTCACAC 60.672 55.000 0.00 0.00 43.62 3.82
2579 8649 0.671781 GATGCTCCGCAACTCACACT 60.672 55.000 0.00 0.00 43.62 3.55
2580 8650 0.952497 ATGCTCCGCAACTCACACTG 60.952 55.000 0.00 0.00 43.62 3.66
2581 8651 2.959357 GCTCCGCAACTCACACTGC 61.959 63.158 0.00 0.00 35.14 4.40
2585 8655 2.280797 GCAACTCACACTGCGGGA 60.281 61.111 0.00 0.00 0.00 5.14
2586 8656 2.320587 GCAACTCACACTGCGGGAG 61.321 63.158 0.00 0.00 34.85 4.30
2587 8657 1.669115 CAACTCACACTGCGGGAGG 60.669 63.158 0.51 0.00 32.98 4.30
2588 8658 3.537206 AACTCACACTGCGGGAGGC 62.537 63.158 0.51 0.00 43.96 4.70
2589 8659 4.767255 CTCACACTGCGGGAGGCC 62.767 72.222 0.00 0.00 42.61 5.19
2595 8665 4.821589 CTGCGGGAGGCCGACTTC 62.822 72.222 0.00 0.00 42.61 3.01
2598 8668 4.148825 CGGGAGGCCGACTTCCAG 62.149 72.222 10.71 2.96 46.30 3.86
2599 8669 4.475135 GGGAGGCCGACTTCCAGC 62.475 72.222 10.71 0.00 45.18 4.85
2600 8670 4.821589 GGAGGCCGACTTCCAGCG 62.822 72.222 3.88 0.00 0.00 5.18
2605 8675 2.411701 CCGACTTCCAGCGCGATA 59.588 61.111 12.10 0.00 0.00 2.92
2606 8676 1.944676 CCGACTTCCAGCGCGATAC 60.945 63.158 12.10 0.00 0.00 2.24
2620 8690 0.025513 CGATACGCAAGACAGCAAGC 59.974 55.000 0.00 0.00 43.62 4.01
2621 8691 0.375106 GATACGCAAGACAGCAAGCC 59.625 55.000 0.00 0.00 43.62 4.35
2622 8692 1.361668 ATACGCAAGACAGCAAGCCG 61.362 55.000 0.00 0.00 43.62 5.52
2623 8693 4.093952 CGCAAGACAGCAAGCCGG 62.094 66.667 0.00 0.00 43.02 6.13
2624 8694 4.410743 GCAAGACAGCAAGCCGGC 62.411 66.667 21.89 21.89 0.00 6.13
2625 8695 4.093952 CAAGACAGCAAGCCGGCG 62.094 66.667 23.20 9.22 39.27 6.46
2640 8710 2.981350 GCGCTTTTGGGACCCGAA 60.981 61.111 9.39 9.39 33.84 4.30
2641 8711 2.557372 GCGCTTTTGGGACCCGAAA 61.557 57.895 22.56 22.56 35.76 3.46
2642 8712 1.284715 CGCTTTTGGGACCCGAAAC 59.715 57.895 20.57 15.82 33.73 2.78
2643 8713 1.663739 GCTTTTGGGACCCGAAACC 59.336 57.895 20.57 11.78 33.73 3.27
2644 8714 1.812686 GCTTTTGGGACCCGAAACCC 61.813 60.000 20.57 11.54 45.74 4.11
2645 8715 1.152504 TTTTGGGACCCGAAACCCC 60.153 57.895 20.57 0.00 45.01 4.95
2647 8717 3.572222 TGGGACCCGAAACCCCAC 61.572 66.667 5.91 0.00 44.67 4.61
2648 8718 3.572222 GGGACCCGAAACCCCACA 61.572 66.667 0.00 0.00 40.19 4.17
2649 8719 2.281970 GGACCCGAAACCCCACAC 60.282 66.667 0.00 0.00 0.00 3.82
2650 8720 2.667199 GACCCGAAACCCCACACG 60.667 66.667 0.00 0.00 0.00 4.49
2651 8721 4.941309 ACCCGAAACCCCACACGC 62.941 66.667 0.00 0.00 0.00 5.34
2695 8765 4.937431 GGCGGCTATGGACTGCCC 62.937 72.222 0.00 0.00 45.90 5.36
2696 8766 3.866582 GCGGCTATGGACTGCCCT 61.867 66.667 0.00 0.00 45.90 5.19
2697 8767 2.507854 GCGGCTATGGACTGCCCTA 61.508 63.158 0.00 0.00 45.90 3.53
2698 8768 1.668294 CGGCTATGGACTGCCCTAG 59.332 63.158 0.00 0.00 45.90 3.02
2699 8769 1.821061 CGGCTATGGACTGCCCTAGG 61.821 65.000 0.06 0.06 45.90 3.02
2700 8770 0.764752 GGCTATGGACTGCCCTAGGT 60.765 60.000 8.29 0.00 43.11 3.08
2701 8771 0.682292 GCTATGGACTGCCCTAGGTC 59.318 60.000 8.29 0.00 34.15 3.85
2702 8772 0.962489 CTATGGACTGCCCTAGGTCG 59.038 60.000 8.29 0.00 35.38 4.79
2703 8773 0.554305 TATGGACTGCCCTAGGTCGA 59.446 55.000 8.29 0.00 35.38 4.20
2704 8774 1.043673 ATGGACTGCCCTAGGTCGAC 61.044 60.000 7.13 7.13 35.38 4.20
2705 8775 2.424733 GGACTGCCCTAGGTCGACC 61.425 68.421 27.67 27.67 33.70 4.79
2719 8789 1.953017 CGACCTGATCGCCTCTAGG 59.047 63.158 0.00 0.00 45.52 3.02
2720 8790 1.519751 CGACCTGATCGCCTCTAGGG 61.520 65.000 0.00 0.00 45.52 3.53
2729 8799 2.604152 CCTCTAGGGCCTCGAGGT 59.396 66.667 35.00 15.52 38.26 3.85
2730 8800 1.075896 CCTCTAGGGCCTCGAGGTT 60.076 63.158 35.00 19.55 38.26 3.50
2731 8801 1.110518 CCTCTAGGGCCTCGAGGTTC 61.111 65.000 35.00 22.74 38.26 3.62
2732 8802 1.448922 CTCTAGGGCCTCGAGGTTCG 61.449 65.000 31.43 15.86 42.10 3.95
2733 8803 3.140225 CTAGGGCCTCGAGGTTCGC 62.140 68.421 31.43 22.76 40.21 4.70
2745 8815 4.481112 GTTCGCCGCCCTGCAATG 62.481 66.667 0.00 0.00 0.00 2.82
2746 8816 4.713735 TTCGCCGCCCTGCAATGA 62.714 61.111 0.00 0.00 0.00 2.57
2747 8817 4.713735 TCGCCGCCCTGCAATGAA 62.714 61.111 0.00 0.00 0.00 2.57
2748 8818 4.183686 CGCCGCCCTGCAATGAAG 62.184 66.667 0.00 0.00 0.00 3.02
2749 8819 2.751436 GCCGCCCTGCAATGAAGA 60.751 61.111 0.00 0.00 0.00 2.87
2750 8820 2.342650 GCCGCCCTGCAATGAAGAA 61.343 57.895 0.00 0.00 0.00 2.52
2751 8821 1.805254 CCGCCCTGCAATGAAGAAG 59.195 57.895 0.00 0.00 0.00 2.85
2752 8822 0.677731 CCGCCCTGCAATGAAGAAGA 60.678 55.000 0.00 0.00 0.00 2.87
2753 8823 1.167851 CGCCCTGCAATGAAGAAGAA 58.832 50.000 0.00 0.00 0.00 2.52
2754 8824 1.135575 CGCCCTGCAATGAAGAAGAAC 60.136 52.381 0.00 0.00 0.00 3.01
2755 8825 1.135575 GCCCTGCAATGAAGAAGAACG 60.136 52.381 0.00 0.00 0.00 3.95
2756 8826 2.426522 CCCTGCAATGAAGAAGAACGA 58.573 47.619 0.00 0.00 0.00 3.85
2757 8827 2.813754 CCCTGCAATGAAGAAGAACGAA 59.186 45.455 0.00 0.00 0.00 3.85
2758 8828 3.365364 CCCTGCAATGAAGAAGAACGAAC 60.365 47.826 0.00 0.00 0.00 3.95
2759 8829 3.250762 CCTGCAATGAAGAAGAACGAACA 59.749 43.478 0.00 0.00 0.00 3.18
2760 8830 4.261155 CCTGCAATGAAGAAGAACGAACAA 60.261 41.667 0.00 0.00 0.00 2.83
2761 8831 5.242069 TGCAATGAAGAAGAACGAACAAA 57.758 34.783 0.00 0.00 0.00 2.83
2762 8832 5.273170 TGCAATGAAGAAGAACGAACAAAG 58.727 37.500 0.00 0.00 0.00 2.77
2763 8833 5.065859 TGCAATGAAGAAGAACGAACAAAGA 59.934 36.000 0.00 0.00 0.00 2.52
2764 8834 5.971202 GCAATGAAGAAGAACGAACAAAGAA 59.029 36.000 0.00 0.00 0.00 2.52
2765 8835 6.075362 GCAATGAAGAAGAACGAACAAAGAAC 60.075 38.462 0.00 0.00 0.00 3.01
2766 8836 6.677781 ATGAAGAAGAACGAACAAAGAACA 57.322 33.333 0.00 0.00 0.00 3.18
2767 8837 6.489127 TGAAGAAGAACGAACAAAGAACAA 57.511 33.333 0.00 0.00 0.00 2.83
2768 8838 6.542852 TGAAGAAGAACGAACAAAGAACAAG 58.457 36.000 0.00 0.00 0.00 3.16
2769 8839 5.485662 AGAAGAACGAACAAAGAACAAGG 57.514 39.130 0.00 0.00 0.00 3.61
2770 8840 5.183228 AGAAGAACGAACAAAGAACAAGGA 58.817 37.500 0.00 0.00 0.00 3.36
2771 8841 5.646360 AGAAGAACGAACAAAGAACAAGGAA 59.354 36.000 0.00 0.00 0.00 3.36
2772 8842 5.485662 AGAACGAACAAAGAACAAGGAAG 57.514 39.130 0.00 0.00 0.00 3.46
2773 8843 5.183228 AGAACGAACAAAGAACAAGGAAGA 58.817 37.500 0.00 0.00 0.00 2.87
2774 8844 5.646360 AGAACGAACAAAGAACAAGGAAGAA 59.354 36.000 0.00 0.00 0.00 2.52
2775 8845 5.485662 ACGAACAAAGAACAAGGAAGAAG 57.514 39.130 0.00 0.00 0.00 2.85
2776 8846 5.183228 ACGAACAAAGAACAAGGAAGAAGA 58.817 37.500 0.00 0.00 0.00 2.87
2777 8847 5.646360 ACGAACAAAGAACAAGGAAGAAGAA 59.354 36.000 0.00 0.00 0.00 2.52
2778 8848 6.183360 ACGAACAAAGAACAAGGAAGAAGAAG 60.183 38.462 0.00 0.00 0.00 2.85
2779 8849 6.037172 CGAACAAAGAACAAGGAAGAAGAAGA 59.963 38.462 0.00 0.00 0.00 2.87
2780 8850 7.414098 CGAACAAAGAACAAGGAAGAAGAAGAA 60.414 37.037 0.00 0.00 0.00 2.52
2781 8851 7.089770 ACAAAGAACAAGGAAGAAGAAGAAC 57.910 36.000 0.00 0.00 0.00 3.01
2782 8852 6.887002 ACAAAGAACAAGGAAGAAGAAGAACT 59.113 34.615 0.00 0.00 0.00 3.01
2783 8853 8.047310 ACAAAGAACAAGGAAGAAGAAGAACTA 58.953 33.333 0.00 0.00 0.00 2.24
2784 8854 8.555361 CAAAGAACAAGGAAGAAGAAGAACTAG 58.445 37.037 0.00 0.00 0.00 2.57
2785 8855 6.764379 AGAACAAGGAAGAAGAAGAACTAGG 58.236 40.000 0.00 0.00 0.00 3.02
2786 8856 5.491323 ACAAGGAAGAAGAAGAACTAGGG 57.509 43.478 0.00 0.00 0.00 3.53
2787 8857 4.908481 ACAAGGAAGAAGAAGAACTAGGGT 59.092 41.667 0.00 0.00 0.00 4.34
2788 8858 5.369993 ACAAGGAAGAAGAAGAACTAGGGTT 59.630 40.000 0.00 0.00 38.52 4.11
2789 8859 6.557633 ACAAGGAAGAAGAAGAACTAGGGTTA 59.442 38.462 0.00 0.00 35.58 2.85
2790 8860 7.072076 ACAAGGAAGAAGAAGAACTAGGGTTAA 59.928 37.037 0.00 0.00 35.58 2.01
2791 8861 7.247456 AGGAAGAAGAAGAACTAGGGTTAAG 57.753 40.000 0.00 0.00 35.58 1.85
2792 8862 6.213802 AGGAAGAAGAAGAACTAGGGTTAAGG 59.786 42.308 0.00 0.00 35.58 2.69
2793 8863 6.212993 GGAAGAAGAAGAACTAGGGTTAAGGA 59.787 42.308 0.00 0.00 35.58 3.36
2794 8864 6.860790 AGAAGAAGAACTAGGGTTAAGGAG 57.139 41.667 0.00 0.00 35.58 3.69
2795 8865 6.563163 AGAAGAAGAACTAGGGTTAAGGAGA 58.437 40.000 0.00 0.00 35.58 3.71
2796 8866 7.017531 AGAAGAAGAACTAGGGTTAAGGAGAA 58.982 38.462 0.00 0.00 35.58 2.87
2797 8867 7.513091 AGAAGAAGAACTAGGGTTAAGGAGAAA 59.487 37.037 0.00 0.00 35.58 2.52
2798 8868 7.247456 AGAAGAACTAGGGTTAAGGAGAAAG 57.753 40.000 0.00 0.00 35.58 2.62
2799 8869 7.017531 AGAAGAACTAGGGTTAAGGAGAAAGA 58.982 38.462 0.00 0.00 35.58 2.52
2800 8870 7.680739 AGAAGAACTAGGGTTAAGGAGAAAGAT 59.319 37.037 0.00 0.00 35.58 2.40
2801 8871 8.912614 AAGAACTAGGGTTAAGGAGAAAGATA 57.087 34.615 0.00 0.00 35.58 1.98
2802 8872 8.912614 AGAACTAGGGTTAAGGAGAAAGATAA 57.087 34.615 0.00 0.00 35.58 1.75
2803 8873 9.335211 AGAACTAGGGTTAAGGAGAAAGATAAA 57.665 33.333 0.00 0.00 35.58 1.40
2804 8874 9.955102 GAACTAGGGTTAAGGAGAAAGATAAAA 57.045 33.333 0.00 0.00 35.58 1.52
2805 8875 9.961264 AACTAGGGTTAAGGAGAAAGATAAAAG 57.039 33.333 0.00 0.00 33.39 2.27
2806 8876 9.335211 ACTAGGGTTAAGGAGAAAGATAAAAGA 57.665 33.333 0.00 0.00 0.00 2.52
2831 8901 9.869844 GATAAAAAGTGGTAGATTGATTGATCG 57.130 33.333 0.00 0.00 0.00 3.69
2832 8902 7.921786 AAAAAGTGGTAGATTGATTGATCGA 57.078 32.000 0.00 0.00 0.00 3.59
2833 8903 8.511604 AAAAAGTGGTAGATTGATTGATCGAT 57.488 30.769 0.00 0.00 33.64 3.59
2834 8904 8.511604 AAAAGTGGTAGATTGATTGATCGATT 57.488 30.769 0.00 0.00 31.12 3.34
2835 8905 7.488187 AAGTGGTAGATTGATTGATCGATTG 57.512 36.000 0.00 0.00 31.12 2.67
2836 8906 6.586344 AGTGGTAGATTGATTGATCGATTGT 58.414 36.000 0.00 0.00 31.12 2.71
2837 8907 6.481313 AGTGGTAGATTGATTGATCGATTGTG 59.519 38.462 0.00 0.00 31.12 3.33
2838 8908 6.258727 GTGGTAGATTGATTGATCGATTGTGT 59.741 38.462 0.00 0.00 31.12 3.72
2839 8909 6.258507 TGGTAGATTGATTGATCGATTGTGTG 59.741 38.462 0.00 0.00 31.12 3.82
2840 8910 6.258727 GGTAGATTGATTGATCGATTGTGTGT 59.741 38.462 0.00 0.00 31.12 3.72
2841 8911 6.748333 AGATTGATTGATCGATTGTGTGTT 57.252 33.333 0.00 0.00 31.12 3.32
2842 8912 6.549061 AGATTGATTGATCGATTGTGTGTTG 58.451 36.000 0.00 0.00 31.12 3.33
2843 8913 5.687770 TTGATTGATCGATTGTGTGTTGT 57.312 34.783 0.00 0.00 0.00 3.32
2844 8914 5.687770 TGATTGATCGATTGTGTGTTGTT 57.312 34.783 0.00 0.00 0.00 2.83
2845 8915 5.688823 TGATTGATCGATTGTGTGTTGTTC 58.311 37.500 0.00 0.00 0.00 3.18
2846 8916 5.238214 TGATTGATCGATTGTGTGTTGTTCA 59.762 36.000 0.00 0.00 0.00 3.18
2847 8917 5.491635 TTGATCGATTGTGTGTTGTTCAA 57.508 34.783 0.00 0.00 0.00 2.69
2848 8918 5.687770 TGATCGATTGTGTGTTGTTCAAT 57.312 34.783 0.00 0.00 35.00 2.57
2849 8919 5.688823 TGATCGATTGTGTGTTGTTCAATC 58.311 37.500 0.00 0.00 41.96 2.67
2852 8922 2.483583 TTGTGTGTTGTTCAATCGGC 57.516 45.000 0.00 0.00 0.00 5.54
2853 8923 0.665835 TGTGTGTTGTTCAATCGGCC 59.334 50.000 0.00 0.00 0.00 6.13
2854 8924 0.665835 GTGTGTTGTTCAATCGGCCA 59.334 50.000 2.24 0.00 0.00 5.36
2855 8925 1.269448 GTGTGTTGTTCAATCGGCCAT 59.731 47.619 2.24 0.00 0.00 4.40
2856 8926 1.539388 TGTGTTGTTCAATCGGCCATC 59.461 47.619 2.24 0.00 0.00 3.51
2857 8927 1.539388 GTGTTGTTCAATCGGCCATCA 59.461 47.619 2.24 0.00 0.00 3.07
2858 8928 1.539388 TGTTGTTCAATCGGCCATCAC 59.461 47.619 2.24 0.00 0.00 3.06
2859 8929 1.135402 GTTGTTCAATCGGCCATCACC 60.135 52.381 2.24 0.00 0.00 4.02
2860 8930 0.679640 TGTTCAATCGGCCATCACCC 60.680 55.000 2.24 0.00 0.00 4.61
2861 8931 1.077068 TTCAATCGGCCATCACCCC 60.077 57.895 2.24 0.00 0.00 4.95
2862 8932 1.570857 TTCAATCGGCCATCACCCCT 61.571 55.000 2.24 0.00 0.00 4.79
2863 8933 1.526917 CAATCGGCCATCACCCCTC 60.527 63.158 2.24 0.00 0.00 4.30
2864 8934 2.000701 AATCGGCCATCACCCCTCA 61.001 57.895 2.24 0.00 0.00 3.86
2865 8935 1.987807 AATCGGCCATCACCCCTCAG 61.988 60.000 2.24 0.00 0.00 3.35
2866 8936 4.181010 CGGCCATCACCCCTCAGG 62.181 72.222 2.24 0.00 43.78 3.86
2878 8948 3.870633 CCCCTCAGGTATATAAGACGC 57.129 52.381 0.00 0.00 0.00 5.19
2879 8949 2.163815 CCCCTCAGGTATATAAGACGCG 59.836 54.545 3.53 3.53 0.00 6.01
2880 8950 2.163815 CCCTCAGGTATATAAGACGCGG 59.836 54.545 12.47 0.00 0.00 6.46
2881 8951 3.079578 CCTCAGGTATATAAGACGCGGA 58.920 50.000 12.47 0.00 0.00 5.54
2882 8952 3.695060 CCTCAGGTATATAAGACGCGGAT 59.305 47.826 12.47 0.18 0.00 4.18
2883 8953 4.438880 CCTCAGGTATATAAGACGCGGATG 60.439 50.000 12.47 0.00 0.00 3.51
2884 8954 3.442625 TCAGGTATATAAGACGCGGATGG 59.557 47.826 12.47 0.00 0.00 3.51
2885 8955 3.442625 CAGGTATATAAGACGCGGATGGA 59.557 47.826 12.47 0.00 0.00 3.41
2886 8956 3.442977 AGGTATATAAGACGCGGATGGAC 59.557 47.826 12.47 0.00 0.00 4.02
2887 8957 3.442977 GGTATATAAGACGCGGATGGACT 59.557 47.826 12.47 0.00 0.00 3.85
2888 8958 4.082354 GGTATATAAGACGCGGATGGACTT 60.082 45.833 12.47 8.41 0.00 3.01
2889 8959 2.510768 ATAAGACGCGGATGGACTTC 57.489 50.000 12.47 0.00 0.00 3.01
2890 8960 0.458669 TAAGACGCGGATGGACTTCC 59.541 55.000 12.47 0.00 0.00 3.46
2891 8961 2.202892 GACGCGGATGGACTTCCC 60.203 66.667 12.47 0.00 34.29 3.97
2892 8962 4.143333 ACGCGGATGGACTTCCCG 62.143 66.667 12.47 0.00 45.51 5.14
2893 8963 4.143333 CGCGGATGGACTTCCCGT 62.143 66.667 0.00 0.00 44.63 5.28
2894 8964 2.511600 GCGGATGGACTTCCCGTG 60.512 66.667 0.00 0.00 44.63 4.94
2895 8965 2.978824 CGGATGGACTTCCCGTGT 59.021 61.111 0.00 0.00 38.55 4.49
2896 8966 1.952102 GCGGATGGACTTCCCGTGTA 61.952 60.000 0.00 0.00 44.63 2.90
2897 8967 0.533491 CGGATGGACTTCCCGTGTAA 59.467 55.000 0.00 0.00 38.55 2.41
2898 8968 1.470979 CGGATGGACTTCCCGTGTAAG 60.471 57.143 0.00 0.00 38.55 2.34
2899 8969 1.134491 GGATGGACTTCCCGTGTAAGG 60.134 57.143 0.00 0.00 37.93 2.69
2900 8970 1.829222 GATGGACTTCCCGTGTAAGGA 59.171 52.381 0.00 0.00 37.93 3.36
2901 8971 1.719529 TGGACTTCCCGTGTAAGGAA 58.280 50.000 0.00 0.00 41.14 3.36
2902 8972 2.048601 TGGACTTCCCGTGTAAGGAAA 58.951 47.619 0.00 0.00 42.75 3.13
2903 8973 2.438763 TGGACTTCCCGTGTAAGGAAAA 59.561 45.455 0.00 0.00 42.75 2.29
2904 8974 3.072211 GGACTTCCCGTGTAAGGAAAAG 58.928 50.000 0.00 0.00 42.75 2.27
2905 8975 3.072211 GACTTCCCGTGTAAGGAAAAGG 58.928 50.000 0.00 0.00 42.75 3.11
2906 8976 1.810755 CTTCCCGTGTAAGGAAAAGGC 59.189 52.381 0.00 0.00 42.75 4.35
2907 8977 1.061546 TCCCGTGTAAGGAAAAGGCT 58.938 50.000 0.00 0.00 0.00 4.58
2908 8978 1.422402 TCCCGTGTAAGGAAAAGGCTT 59.578 47.619 0.00 0.00 0.00 4.35
2909 8979 1.539827 CCCGTGTAAGGAAAAGGCTTG 59.460 52.381 0.00 0.00 0.00 4.01
2910 8980 1.539827 CCGTGTAAGGAAAAGGCTTGG 59.460 52.381 0.00 0.00 0.00 3.61
2911 8981 2.500229 CGTGTAAGGAAAAGGCTTGGA 58.500 47.619 0.00 0.00 0.00 3.53
2912 8982 3.081804 CGTGTAAGGAAAAGGCTTGGAT 58.918 45.455 0.00 0.00 0.00 3.41
2913 8983 3.506067 CGTGTAAGGAAAAGGCTTGGATT 59.494 43.478 0.00 0.00 0.00 3.01
2914 8984 4.379499 CGTGTAAGGAAAAGGCTTGGATTC 60.379 45.833 0.00 0.53 0.00 2.52
2915 8985 4.522789 GTGTAAGGAAAAGGCTTGGATTCA 59.477 41.667 0.00 0.00 0.00 2.57
2916 8986 4.522789 TGTAAGGAAAAGGCTTGGATTCAC 59.477 41.667 0.00 0.00 0.00 3.18
2917 8987 2.162681 AGGAAAAGGCTTGGATTCACG 58.837 47.619 0.00 0.00 0.00 4.35
2918 8988 1.886542 GGAAAAGGCTTGGATTCACGT 59.113 47.619 0.00 0.00 0.00 4.49
2919 8989 2.095212 GGAAAAGGCTTGGATTCACGTC 60.095 50.000 0.00 0.00 0.00 4.34
2920 8990 1.534729 AAAGGCTTGGATTCACGTCC 58.465 50.000 0.00 0.00 38.81 4.79
2921 8991 0.400213 AAGGCTTGGATTCACGTCCA 59.600 50.000 0.00 0.00 46.28 4.02
2927 8997 1.611519 TGGATTCACGTCCAAAACCC 58.388 50.000 0.00 0.00 45.03 4.11
2928 8998 1.144093 TGGATTCACGTCCAAAACCCT 59.856 47.619 0.00 0.00 45.03 4.34
2929 8999 2.372504 TGGATTCACGTCCAAAACCCTA 59.627 45.455 0.00 0.00 45.03 3.53
2930 9000 3.007635 GGATTCACGTCCAAAACCCTAG 58.992 50.000 0.00 0.00 38.20 3.02
2931 9001 3.558533 GGATTCACGTCCAAAACCCTAGT 60.559 47.826 0.00 0.00 38.20 2.57
2932 9002 2.825861 TCACGTCCAAAACCCTAGTC 57.174 50.000 0.00 0.00 0.00 2.59
2933 9003 2.040939 TCACGTCCAAAACCCTAGTCA 58.959 47.619 0.00 0.00 0.00 3.41
2934 9004 2.435069 TCACGTCCAAAACCCTAGTCAA 59.565 45.455 0.00 0.00 0.00 3.18
2935 9005 3.118334 TCACGTCCAAAACCCTAGTCAAA 60.118 43.478 0.00 0.00 0.00 2.69
2936 9006 3.818773 CACGTCCAAAACCCTAGTCAAAT 59.181 43.478 0.00 0.00 0.00 2.32
2937 9007 4.277423 CACGTCCAAAACCCTAGTCAAATT 59.723 41.667 0.00 0.00 0.00 1.82
2938 9008 4.517832 ACGTCCAAAACCCTAGTCAAATTC 59.482 41.667 0.00 0.00 0.00 2.17
2939 9009 4.378046 CGTCCAAAACCCTAGTCAAATTCG 60.378 45.833 0.00 0.00 0.00 3.34
2940 9010 4.076394 TCCAAAACCCTAGTCAAATTCGG 58.924 43.478 0.00 0.00 0.00 4.30
2941 9011 4.076394 CCAAAACCCTAGTCAAATTCGGA 58.924 43.478 0.00 0.00 0.00 4.55
2942 9012 4.705023 CCAAAACCCTAGTCAAATTCGGAT 59.295 41.667 0.00 0.00 0.00 4.18
2943 9013 5.185056 CCAAAACCCTAGTCAAATTCGGATT 59.815 40.000 0.00 0.00 0.00 3.01
2944 9014 5.897377 AAACCCTAGTCAAATTCGGATTG 57.103 39.130 0.00 0.00 0.00 2.67
2945 9015 3.886123 ACCCTAGTCAAATTCGGATTGG 58.114 45.455 0.00 0.00 0.00 3.16
2946 9016 3.265995 ACCCTAGTCAAATTCGGATTGGT 59.734 43.478 0.00 0.00 0.00 3.67
2947 9017 4.263771 ACCCTAGTCAAATTCGGATTGGTT 60.264 41.667 0.00 0.00 0.00 3.67
2948 9018 4.705023 CCCTAGTCAAATTCGGATTGGTTT 59.295 41.667 0.00 0.00 0.00 3.27
2949 9019 5.185056 CCCTAGTCAAATTCGGATTGGTTTT 59.815 40.000 0.00 0.00 0.00 2.43
2950 9020 6.376018 CCCTAGTCAAATTCGGATTGGTTTTA 59.624 38.462 0.00 0.00 0.00 1.52
2951 9021 7.068226 CCCTAGTCAAATTCGGATTGGTTTTAT 59.932 37.037 0.00 0.00 0.00 1.40
2952 9022 8.129211 CCTAGTCAAATTCGGATTGGTTTTATC 58.871 37.037 0.00 0.00 0.00 1.75
2953 9023 6.863275 AGTCAAATTCGGATTGGTTTTATCC 58.137 36.000 0.00 0.00 38.55 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
414 3224 9.270640 CCATCAAATCAAGGTTTTTCAAATGTA 57.729 29.630 0.00 0.00 0.00 2.29
484 3300 2.622064 AACTGTGTGGACACTTCCTC 57.378 50.000 11.09 0.00 46.55 3.71
957 3826 0.829333 GAGAGCAGATCAGGGCAGAA 59.171 55.000 0.00 0.00 0.00 3.02
1425 7139 4.166888 GCCGCATCCAGGAGCTGA 62.167 66.667 0.00 0.00 32.44 4.26
2023 7786 8.039538 ACTAAGGTTCCTGCAACTAATTACTAC 58.960 37.037 0.00 0.00 35.06 2.73
2024 7787 8.142485 ACTAAGGTTCCTGCAACTAATTACTA 57.858 34.615 0.00 0.00 35.06 1.82
2025 7788 7.017319 ACTAAGGTTCCTGCAACTAATTACT 57.983 36.000 0.00 0.00 35.06 2.24
2043 7810 3.203716 GCGAGGAACCCATAAACTAAGG 58.796 50.000 0.00 0.00 0.00 2.69
2074 7842 5.643348 CCATGCTACAGTAACTGAATCACAA 59.357 40.000 0.00 0.00 35.18 3.33
2129 7938 2.031191 TCAAACTTGGCGAGAAACGTTC 59.969 45.455 9.20 0.00 44.60 3.95
2132 7941 2.372350 GTTCAAACTTGGCGAGAAACG 58.628 47.619 9.20 0.00 45.66 3.60
2134 7943 2.281517 TCGTTCAAACTTGGCGAGAAA 58.718 42.857 9.20 0.00 34.19 2.52
2136 7945 1.595794 GTTCGTTCAAACTTGGCGAGA 59.404 47.619 9.20 0.00 37.32 4.04
2137 7946 1.329292 TGTTCGTTCAAACTTGGCGAG 59.671 47.619 0.00 0.00 37.32 5.03
2138 7947 1.370609 TGTTCGTTCAAACTTGGCGA 58.629 45.000 0.00 6.13 35.50 5.54
2139 7948 2.181426 TTGTTCGTTCAAACTTGGCG 57.819 45.000 0.00 0.00 0.00 5.69
2191 8161 9.158233 CGGTTATAGAAAGTTCAACCAGATTTA 57.842 33.333 10.62 0.00 38.86 1.40
2192 8162 7.120726 CCGGTTATAGAAAGTTCAACCAGATTT 59.879 37.037 10.62 0.00 38.86 2.17
2204 8174 6.574350 CAGATTCAGACCGGTTATAGAAAGT 58.426 40.000 9.42 0.00 0.00 2.66
2261 8317 8.833493 TCACATCTATTTAGTTCATGCATCAAG 58.167 33.333 0.00 0.00 0.00 3.02
2272 8328 5.445939 CGTTGCGCTTCACATCTATTTAGTT 60.446 40.000 9.73 0.00 0.00 2.24
2290 8346 4.753516 ACATTTGTTTTTCTTCGTTGCG 57.246 36.364 0.00 0.00 0.00 4.85
2291 8347 8.932963 CATTTAACATTTGTTTTTCTTCGTTGC 58.067 29.630 0.63 0.00 39.31 4.17
2311 8367 7.792364 TCCTTCTTAGGTCTGAGACATTTAA 57.208 36.000 15.33 8.70 42.60 1.52
2313 8369 6.882768 ATCCTTCTTAGGTCTGAGACATTT 57.117 37.500 15.33 1.98 42.60 2.32
2314 8370 8.560124 AATATCCTTCTTAGGTCTGAGACATT 57.440 34.615 15.33 4.55 42.60 2.71
2315 8371 8.010105 AGAATATCCTTCTTAGGTCTGAGACAT 58.990 37.037 15.33 10.27 42.60 3.06
2316 8372 7.358263 AGAATATCCTTCTTAGGTCTGAGACA 58.642 38.462 15.33 0.00 42.60 3.41
2317 8373 7.833285 AGAATATCCTTCTTAGGTCTGAGAC 57.167 40.000 3.47 3.47 42.60 3.36
2318 8374 8.729047 AGTAGAATATCCTTCTTAGGTCTGAGA 58.271 37.037 0.00 0.00 42.60 3.27
2319 8375 8.934023 AGTAGAATATCCTTCTTAGGTCTGAG 57.066 38.462 0.00 0.00 42.60 3.35
2321 8377 8.736244 GCTAGTAGAATATCCTTCTTAGGTCTG 58.264 40.741 0.00 0.00 42.60 3.51
2322 8378 8.449625 TGCTAGTAGAATATCCTTCTTAGGTCT 58.550 37.037 0.00 0.00 42.60 3.85
2351 8420 6.493116 GTTGCTCTGAATCGATGAAATTCAT 58.507 36.000 8.39 8.39 41.10 2.57
2364 8433 1.812235 TCATGTGCGTTGCTCTGAAT 58.188 45.000 0.00 0.00 0.00 2.57
2404 8473 7.271223 CACTGGTTATAGAAAAACTTGATTGCG 59.729 37.037 0.00 0.00 0.00 4.85
2509 8579 4.059459 CGTGTGACGCGTTCCAGC 62.059 66.667 15.53 0.00 33.65 4.85
2510 8580 1.947146 TTCGTGTGACGCGTTCCAG 60.947 57.895 15.53 4.69 42.21 3.86
2511 8581 2.104530 TTCGTGTGACGCGTTCCA 59.895 55.556 15.53 10.77 42.21 3.53
2512 8582 2.232296 TGTTCGTGTGACGCGTTCC 61.232 57.895 15.53 7.78 42.21 3.62
2513 8583 1.084478 GTGTTCGTGTGACGCGTTC 60.084 57.895 15.53 10.96 42.21 3.95
2514 8584 1.149361 ATGTGTTCGTGTGACGCGTT 61.149 50.000 15.53 0.00 42.21 4.84
2515 8585 1.545614 GATGTGTTCGTGTGACGCGT 61.546 55.000 13.85 13.85 42.21 6.01
2516 8586 1.127817 GATGTGTTCGTGTGACGCG 59.872 57.895 12.95 12.95 42.21 6.01
2517 8587 1.127817 CGATGTGTTCGTGTGACGC 59.872 57.895 0.00 0.00 42.21 5.19
2530 8600 1.226859 CGCGGGTACACATCGATGT 60.227 57.895 25.18 25.18 42.84 3.06
2531 8601 1.949133 CCGCGGGTACACATCGATG 60.949 63.158 23.68 23.68 0.00 3.84
2532 8602 2.415843 CCGCGGGTACACATCGAT 59.584 61.111 20.10 0.00 0.00 3.59
2533 8603 4.501714 GCCGCGGGTACACATCGA 62.502 66.667 29.38 0.00 0.00 3.59
2549 8619 4.959596 GAGCATCTCCCTCGGCGC 62.960 72.222 0.00 0.00 0.00 6.53
2550 8620 4.292178 GGAGCATCTCCCTCGGCG 62.292 72.222 0.00 0.00 44.36 6.46
2564 8634 3.248029 GCAGTGTGAGTTGCGGAG 58.752 61.111 0.00 0.00 0.00 4.63
2568 8638 2.280797 TCCCGCAGTGTGAGTTGC 60.281 61.111 4.93 0.00 36.97 4.17
2569 8639 1.669115 CCTCCCGCAGTGTGAGTTG 60.669 63.158 4.93 0.00 0.00 3.16
2570 8640 2.743718 CCTCCCGCAGTGTGAGTT 59.256 61.111 4.93 0.00 0.00 3.01
2571 8641 4.008933 GCCTCCCGCAGTGTGAGT 62.009 66.667 4.93 0.00 37.47 3.41
2572 8642 4.767255 GGCCTCCCGCAGTGTGAG 62.767 72.222 4.93 2.52 40.31 3.51
2582 8652 4.475135 GCTGGAAGTCGGCCTCCC 62.475 72.222 1.35 0.00 41.83 4.30
2583 8653 4.821589 CGCTGGAAGTCGGCCTCC 62.822 72.222 0.00 0.00 44.74 4.30
2587 8657 3.768185 TATCGCGCTGGAAGTCGGC 62.768 63.158 5.56 0.00 44.14 5.54
2588 8658 1.944676 GTATCGCGCTGGAAGTCGG 60.945 63.158 5.56 0.00 34.78 4.79
2589 8659 2.286559 CGTATCGCGCTGGAAGTCG 61.287 63.158 5.56 0.00 36.73 4.18
2590 8660 3.601981 CGTATCGCGCTGGAAGTC 58.398 61.111 5.56 0.00 35.30 3.01
2601 8671 0.025513 GCTTGCTGTCTTGCGTATCG 59.974 55.000 0.00 0.00 35.36 2.92
2602 8672 0.375106 GGCTTGCTGTCTTGCGTATC 59.625 55.000 0.00 0.00 35.36 2.24
2603 8673 1.361668 CGGCTTGCTGTCTTGCGTAT 61.362 55.000 0.00 0.00 35.36 3.06
2604 8674 2.027073 CGGCTTGCTGTCTTGCGTA 61.027 57.895 0.00 0.00 35.36 4.42
2605 8675 3.349006 CGGCTTGCTGTCTTGCGT 61.349 61.111 0.00 0.00 35.36 5.24
2606 8676 4.093952 CCGGCTTGCTGTCTTGCG 62.094 66.667 0.00 0.00 35.36 4.85
2607 8677 4.410743 GCCGGCTTGCTGTCTTGC 62.411 66.667 22.15 0.00 0.00 4.01
2608 8678 4.093952 CGCCGGCTTGCTGTCTTG 62.094 66.667 26.68 0.00 0.00 3.02
2623 8693 2.557372 TTTCGGGTCCCAAAAGCGC 61.557 57.895 9.12 0.00 0.00 5.92
2624 8694 1.284715 GTTTCGGGTCCCAAAAGCG 59.715 57.895 9.12 0.00 0.00 4.68
2625 8695 1.663739 GGTTTCGGGTCCCAAAAGC 59.336 57.895 7.75 7.75 0.00 3.51
2626 8696 1.183030 GGGGTTTCGGGTCCCAAAAG 61.183 60.000 9.12 0.00 45.06 2.27
2627 8697 1.152504 GGGGTTTCGGGTCCCAAAA 60.153 57.895 9.12 0.00 45.06 2.44
2628 8698 2.392816 TGGGGTTTCGGGTCCCAAA 61.393 57.895 9.12 5.13 46.73 3.28
2629 8699 2.777400 TGGGGTTTCGGGTCCCAA 60.777 61.111 9.12 0.00 46.73 4.12
2631 8701 3.572222 TGTGGGGTTTCGGGTCCC 61.572 66.667 0.00 0.00 42.73 4.46
2632 8702 2.281970 GTGTGGGGTTTCGGGTCC 60.282 66.667 0.00 0.00 0.00 4.46
2633 8703 2.667199 CGTGTGGGGTTTCGGGTC 60.667 66.667 0.00 0.00 0.00 4.46
2634 8704 4.941309 GCGTGTGGGGTTTCGGGT 62.941 66.667 0.00 0.00 0.00 5.28
2682 8752 0.682292 GACCTAGGGCAGTCCATAGC 59.318 60.000 10.77 0.00 43.52 2.97
2683 8753 0.962489 CGACCTAGGGCAGTCCATAG 59.038 60.000 16.92 0.00 44.24 2.23
2684 8754 0.554305 TCGACCTAGGGCAGTCCATA 59.446 55.000 16.92 0.00 38.24 2.74
2685 8755 1.043673 GTCGACCTAGGGCAGTCCAT 61.044 60.000 16.92 0.00 38.24 3.41
2686 8756 1.681327 GTCGACCTAGGGCAGTCCA 60.681 63.158 16.92 0.00 38.24 4.02
2687 8757 2.424733 GGTCGACCTAGGGCAGTCC 61.425 68.421 27.64 10.91 0.00 3.85
2688 8758 1.380112 AGGTCGACCTAGGGCAGTC 60.380 63.158 35.59 4.02 46.48 3.51
2689 8759 1.682684 CAGGTCGACCTAGGGCAGT 60.683 63.158 35.80 10.03 46.65 4.40
2690 8760 0.757188 ATCAGGTCGACCTAGGGCAG 60.757 60.000 35.80 22.25 46.65 4.85
2691 8761 0.755698 GATCAGGTCGACCTAGGGCA 60.756 60.000 35.80 17.65 46.65 5.36
2692 8762 2.042800 GATCAGGTCGACCTAGGGC 58.957 63.158 35.80 20.91 46.65 5.19
2702 8772 2.346597 CCCTAGAGGCGATCAGGTC 58.653 63.158 0.00 0.00 0.00 3.85
2703 8773 4.609098 CCCTAGAGGCGATCAGGT 57.391 61.111 0.00 0.00 0.00 4.00
2713 8783 1.448922 CGAACCTCGAGGCCCTAGAG 61.449 65.000 31.56 13.50 43.74 2.43
2714 8784 1.453379 CGAACCTCGAGGCCCTAGA 60.453 63.158 31.56 0.00 43.74 2.43
2715 8785 3.121019 CGAACCTCGAGGCCCTAG 58.879 66.667 31.56 14.29 43.74 3.02
2716 8786 3.145551 GCGAACCTCGAGGCCCTA 61.146 66.667 31.56 0.00 43.74 3.53
2728 8798 4.481112 CATTGCAGGGCGGCGAAC 62.481 66.667 12.98 1.32 36.28 3.95
2729 8799 4.713735 TCATTGCAGGGCGGCGAA 62.714 61.111 12.98 0.00 36.28 4.70
2730 8800 4.713735 TTCATTGCAGGGCGGCGA 62.714 61.111 12.98 0.00 36.28 5.54
2731 8801 4.183686 CTTCATTGCAGGGCGGCG 62.184 66.667 0.51 0.51 36.28 6.46
2732 8802 2.275547 CTTCTTCATTGCAGGGCGGC 62.276 60.000 0.00 0.00 0.00 6.53
2733 8803 0.677731 TCTTCTTCATTGCAGGGCGG 60.678 55.000 0.00 0.00 0.00 6.13
2734 8804 1.135575 GTTCTTCTTCATTGCAGGGCG 60.136 52.381 0.00 0.00 0.00 6.13
2735 8805 1.135575 CGTTCTTCTTCATTGCAGGGC 60.136 52.381 0.00 0.00 0.00 5.19
2736 8806 2.426522 TCGTTCTTCTTCATTGCAGGG 58.573 47.619 0.00 0.00 0.00 4.45
2737 8807 3.250762 TGTTCGTTCTTCTTCATTGCAGG 59.749 43.478 0.00 0.00 0.00 4.85
2738 8808 4.472691 TGTTCGTTCTTCTTCATTGCAG 57.527 40.909 0.00 0.00 0.00 4.41
2739 8809 4.891627 TTGTTCGTTCTTCTTCATTGCA 57.108 36.364 0.00 0.00 0.00 4.08
2740 8810 5.510671 TCTTTGTTCGTTCTTCTTCATTGC 58.489 37.500 0.00 0.00 0.00 3.56
2741 8811 6.966632 TGTTCTTTGTTCGTTCTTCTTCATTG 59.033 34.615 0.00 0.00 0.00 2.82
2742 8812 7.083875 TGTTCTTTGTTCGTTCTTCTTCATT 57.916 32.000 0.00 0.00 0.00 2.57
2743 8813 6.677781 TGTTCTTTGTTCGTTCTTCTTCAT 57.322 33.333 0.00 0.00 0.00 2.57
2744 8814 6.403200 CCTTGTTCTTTGTTCGTTCTTCTTCA 60.403 38.462 0.00 0.00 0.00 3.02
2745 8815 5.965918 CCTTGTTCTTTGTTCGTTCTTCTTC 59.034 40.000 0.00 0.00 0.00 2.87
2746 8816 5.646360 TCCTTGTTCTTTGTTCGTTCTTCTT 59.354 36.000 0.00 0.00 0.00 2.52
2747 8817 5.183228 TCCTTGTTCTTTGTTCGTTCTTCT 58.817 37.500 0.00 0.00 0.00 2.85
2748 8818 5.479716 TCCTTGTTCTTTGTTCGTTCTTC 57.520 39.130 0.00 0.00 0.00 2.87
2749 8819 5.646360 TCTTCCTTGTTCTTTGTTCGTTCTT 59.354 36.000 0.00 0.00 0.00 2.52
2750 8820 5.183228 TCTTCCTTGTTCTTTGTTCGTTCT 58.817 37.500 0.00 0.00 0.00 3.01
2751 8821 5.479716 TCTTCCTTGTTCTTTGTTCGTTC 57.520 39.130 0.00 0.00 0.00 3.95
2752 8822 5.646360 TCTTCTTCCTTGTTCTTTGTTCGTT 59.354 36.000 0.00 0.00 0.00 3.85
2753 8823 5.183228 TCTTCTTCCTTGTTCTTTGTTCGT 58.817 37.500 0.00 0.00 0.00 3.85
2754 8824 5.734855 TCTTCTTCCTTGTTCTTTGTTCG 57.265 39.130 0.00 0.00 0.00 3.95
2755 8825 7.321745 TCTTCTTCTTCCTTGTTCTTTGTTC 57.678 36.000 0.00 0.00 0.00 3.18
2756 8826 7.394641 AGTTCTTCTTCTTCCTTGTTCTTTGTT 59.605 33.333 0.00 0.00 0.00 2.83
2757 8827 6.887002 AGTTCTTCTTCTTCCTTGTTCTTTGT 59.113 34.615 0.00 0.00 0.00 2.83
2758 8828 7.326968 AGTTCTTCTTCTTCCTTGTTCTTTG 57.673 36.000 0.00 0.00 0.00 2.77
2759 8829 7.717436 CCTAGTTCTTCTTCTTCCTTGTTCTTT 59.283 37.037 0.00 0.00 0.00 2.52
2760 8830 7.220740 CCTAGTTCTTCTTCTTCCTTGTTCTT 58.779 38.462 0.00 0.00 0.00 2.52
2761 8831 6.239743 CCCTAGTTCTTCTTCTTCCTTGTTCT 60.240 42.308 0.00 0.00 0.00 3.01
2762 8832 5.935206 CCCTAGTTCTTCTTCTTCCTTGTTC 59.065 44.000 0.00 0.00 0.00 3.18
2763 8833 5.369993 ACCCTAGTTCTTCTTCTTCCTTGTT 59.630 40.000 0.00 0.00 0.00 2.83
2764 8834 4.908481 ACCCTAGTTCTTCTTCTTCCTTGT 59.092 41.667 0.00 0.00 0.00 3.16
2765 8835 5.491323 ACCCTAGTTCTTCTTCTTCCTTG 57.509 43.478 0.00 0.00 0.00 3.61
2766 8836 7.256727 CCTTAACCCTAGTTCTTCTTCTTCCTT 60.257 40.741 0.00 0.00 37.42 3.36
2767 8837 6.213802 CCTTAACCCTAGTTCTTCTTCTTCCT 59.786 42.308 0.00 0.00 37.42 3.36
2768 8838 6.212993 TCCTTAACCCTAGTTCTTCTTCTTCC 59.787 42.308 0.00 0.00 37.42 3.46
2769 8839 7.178805 TCTCCTTAACCCTAGTTCTTCTTCTTC 59.821 40.741 0.00 0.00 37.42 2.87
2770 8840 7.017531 TCTCCTTAACCCTAGTTCTTCTTCTT 58.982 38.462 0.00 0.00 37.42 2.52
2771 8841 6.563163 TCTCCTTAACCCTAGTTCTTCTTCT 58.437 40.000 0.00 0.00 37.42 2.85
2772 8842 6.854091 TCTCCTTAACCCTAGTTCTTCTTC 57.146 41.667 0.00 0.00 37.42 2.87
2773 8843 7.513091 TCTTTCTCCTTAACCCTAGTTCTTCTT 59.487 37.037 0.00 0.00 37.42 2.52
2774 8844 7.017531 TCTTTCTCCTTAACCCTAGTTCTTCT 58.982 38.462 0.00 0.00 37.42 2.85
2775 8845 7.242322 TCTTTCTCCTTAACCCTAGTTCTTC 57.758 40.000 0.00 0.00 37.42 2.87
2776 8846 7.816300 ATCTTTCTCCTTAACCCTAGTTCTT 57.184 36.000 0.00 0.00 37.42 2.52
2777 8847 8.912614 TTATCTTTCTCCTTAACCCTAGTTCT 57.087 34.615 0.00 0.00 37.42 3.01
2778 8848 9.955102 TTTTATCTTTCTCCTTAACCCTAGTTC 57.045 33.333 0.00 0.00 37.42 3.01
2779 8849 9.961264 CTTTTATCTTTCTCCTTAACCCTAGTT 57.039 33.333 0.00 0.00 40.15 2.24
2780 8850 9.335211 TCTTTTATCTTTCTCCTTAACCCTAGT 57.665 33.333 0.00 0.00 0.00 2.57
2805 8875 9.869844 CGATCAATCAATCTACCACTTTTTATC 57.130 33.333 0.00 0.00 0.00 1.75
2806 8876 9.613428 TCGATCAATCAATCTACCACTTTTTAT 57.387 29.630 0.00 0.00 0.00 1.40
2807 8877 9.613428 ATCGATCAATCAATCTACCACTTTTTA 57.387 29.630 0.00 0.00 0.00 1.52
2808 8878 7.921786 TCGATCAATCAATCTACCACTTTTT 57.078 32.000 0.00 0.00 0.00 1.94
2809 8879 8.400947 CAATCGATCAATCAATCTACCACTTTT 58.599 33.333 0.00 0.00 0.00 2.27
2810 8880 7.554118 ACAATCGATCAATCAATCTACCACTTT 59.446 33.333 0.00 0.00 0.00 2.66
2811 8881 7.011763 CACAATCGATCAATCAATCTACCACTT 59.988 37.037 0.00 0.00 0.00 3.16
2812 8882 6.481313 CACAATCGATCAATCAATCTACCACT 59.519 38.462 0.00 0.00 0.00 4.00
2813 8883 6.258727 ACACAATCGATCAATCAATCTACCAC 59.741 38.462 0.00 0.00 0.00 4.16
2814 8884 6.258507 CACACAATCGATCAATCAATCTACCA 59.741 38.462 0.00 0.00 0.00 3.25
2815 8885 6.258727 ACACACAATCGATCAATCAATCTACC 59.741 38.462 0.00 0.00 0.00 3.18
2816 8886 7.239166 ACACACAATCGATCAATCAATCTAC 57.761 36.000 0.00 0.00 0.00 2.59
2817 8887 7.334171 ACAACACACAATCGATCAATCAATCTA 59.666 33.333 0.00 0.00 0.00 1.98
2818 8888 6.149973 ACAACACACAATCGATCAATCAATCT 59.850 34.615 0.00 0.00 0.00 2.40
2819 8889 6.317088 ACAACACACAATCGATCAATCAATC 58.683 36.000 0.00 0.00 0.00 2.67
2820 8890 6.258230 ACAACACACAATCGATCAATCAAT 57.742 33.333 0.00 0.00 0.00 2.57
2821 8891 5.687770 ACAACACACAATCGATCAATCAA 57.312 34.783 0.00 0.00 0.00 2.57
2822 8892 5.238214 TGAACAACACACAATCGATCAATCA 59.762 36.000 0.00 0.00 0.00 2.57
2823 8893 5.688823 TGAACAACACACAATCGATCAATC 58.311 37.500 0.00 0.00 0.00 2.67
2824 8894 5.687770 TGAACAACACACAATCGATCAAT 57.312 34.783 0.00 0.00 0.00 2.57
2825 8895 5.491635 TTGAACAACACACAATCGATCAA 57.508 34.783 0.00 0.00 0.00 2.57
2826 8896 5.687770 ATTGAACAACACACAATCGATCA 57.312 34.783 0.00 0.00 29.89 2.92
2831 8901 2.979813 GCCGATTGAACAACACACAATC 59.020 45.455 0.00 0.00 43.33 2.67
2832 8902 2.288152 GGCCGATTGAACAACACACAAT 60.288 45.455 0.00 0.00 37.03 2.71
2833 8903 1.066303 GGCCGATTGAACAACACACAA 59.934 47.619 0.00 0.00 0.00 3.33
2834 8904 0.665835 GGCCGATTGAACAACACACA 59.334 50.000 0.00 0.00 0.00 3.72
2835 8905 0.665835 TGGCCGATTGAACAACACAC 59.334 50.000 0.00 0.00 0.00 3.82
2836 8906 1.539388 GATGGCCGATTGAACAACACA 59.461 47.619 0.00 0.00 0.00 3.72
2837 8907 1.539388 TGATGGCCGATTGAACAACAC 59.461 47.619 0.00 0.00 0.00 3.32
2838 8908 1.539388 GTGATGGCCGATTGAACAACA 59.461 47.619 0.00 0.00 0.00 3.33
2839 8909 1.135402 GGTGATGGCCGATTGAACAAC 60.135 52.381 0.00 0.00 0.00 3.32
2840 8910 1.173043 GGTGATGGCCGATTGAACAA 58.827 50.000 0.00 0.00 0.00 2.83
2841 8911 0.679640 GGGTGATGGCCGATTGAACA 60.680 55.000 0.00 0.00 0.00 3.18
2842 8912 1.384222 GGGGTGATGGCCGATTGAAC 61.384 60.000 0.00 0.00 0.00 3.18
2843 8913 1.077068 GGGGTGATGGCCGATTGAA 60.077 57.895 0.00 0.00 0.00 2.69
2844 8914 1.983119 GAGGGGTGATGGCCGATTGA 61.983 60.000 0.00 0.00 0.00 2.57
2845 8915 1.526917 GAGGGGTGATGGCCGATTG 60.527 63.158 0.00 0.00 0.00 2.67
2846 8916 1.987807 CTGAGGGGTGATGGCCGATT 61.988 60.000 0.00 0.00 0.00 3.34
2847 8917 2.366837 TGAGGGGTGATGGCCGAT 60.367 61.111 0.00 0.00 0.00 4.18
2848 8918 3.083349 CTGAGGGGTGATGGCCGA 61.083 66.667 0.00 0.00 0.00 5.54
2849 8919 4.181010 CCTGAGGGGTGATGGCCG 62.181 72.222 0.00 0.00 0.00 6.13
2858 8928 2.163815 CGCGTCTTATATACCTGAGGGG 59.836 54.545 2.38 0.00 41.89 4.79
2859 8929 2.163815 CCGCGTCTTATATACCTGAGGG 59.836 54.545 4.92 0.00 38.88 4.30
2860 8930 3.079578 TCCGCGTCTTATATACCTGAGG 58.920 50.000 4.92 0.00 0.00 3.86
2861 8931 4.438880 CCATCCGCGTCTTATATACCTGAG 60.439 50.000 4.92 0.00 0.00 3.35
2862 8932 3.442625 CCATCCGCGTCTTATATACCTGA 59.557 47.826 4.92 0.00 0.00 3.86
2863 8933 3.442625 TCCATCCGCGTCTTATATACCTG 59.557 47.826 4.92 0.00 0.00 4.00
2864 8934 3.442977 GTCCATCCGCGTCTTATATACCT 59.557 47.826 4.92 0.00 0.00 3.08
2865 8935 3.442977 AGTCCATCCGCGTCTTATATACC 59.557 47.826 4.92 0.00 0.00 2.73
2866 8936 4.698583 AGTCCATCCGCGTCTTATATAC 57.301 45.455 4.92 0.00 0.00 1.47
2867 8937 4.157289 GGAAGTCCATCCGCGTCTTATATA 59.843 45.833 4.92 0.00 35.64 0.86
2868 8938 3.056749 GGAAGTCCATCCGCGTCTTATAT 60.057 47.826 4.92 0.00 35.64 0.86
2869 8939 2.295349 GGAAGTCCATCCGCGTCTTATA 59.705 50.000 4.92 0.00 35.64 0.98
2870 8940 1.068741 GGAAGTCCATCCGCGTCTTAT 59.931 52.381 4.92 0.00 35.64 1.73
2871 8941 0.458669 GGAAGTCCATCCGCGTCTTA 59.541 55.000 4.92 0.00 35.64 2.10
2872 8942 1.218316 GGAAGTCCATCCGCGTCTT 59.782 57.895 4.92 0.00 35.64 3.01
2873 8943 2.722201 GGGAAGTCCATCCGCGTCT 61.722 63.158 4.92 0.00 40.62 4.18
2874 8944 2.202892 GGGAAGTCCATCCGCGTC 60.203 66.667 4.92 0.00 40.62 5.19
2875 8945 4.143333 CGGGAAGTCCATCCGCGT 62.143 66.667 4.92 0.00 40.62 6.01
2876 8946 4.143333 ACGGGAAGTCCATCCGCG 62.143 66.667 0.00 0.00 46.87 6.46
2877 8947 1.952102 TACACGGGAAGTCCATCCGC 61.952 60.000 0.00 0.00 46.87 5.54
2879 8949 1.134491 CCTTACACGGGAAGTCCATCC 60.134 57.143 0.00 0.00 38.86 3.51
2880 8950 1.829222 TCCTTACACGGGAAGTCCATC 59.171 52.381 0.00 0.00 37.91 3.51
2881 8951 1.946984 TCCTTACACGGGAAGTCCAT 58.053 50.000 0.00 0.00 37.91 3.41
2882 8952 1.719529 TTCCTTACACGGGAAGTCCA 58.280 50.000 0.00 0.00 37.86 4.02
2883 8953 2.845363 TTTCCTTACACGGGAAGTCC 57.155 50.000 0.00 0.00 42.79 3.85
2884 8954 3.072211 CCTTTTCCTTACACGGGAAGTC 58.928 50.000 0.00 0.00 42.79 3.01
2885 8955 2.812983 GCCTTTTCCTTACACGGGAAGT 60.813 50.000 0.00 0.00 42.79 3.01
2886 8956 1.810755 GCCTTTTCCTTACACGGGAAG 59.189 52.381 0.00 0.00 42.79 3.46
2887 8957 1.422402 AGCCTTTTCCTTACACGGGAA 59.578 47.619 0.00 0.00 40.61 3.97
2888 8958 1.061546 AGCCTTTTCCTTACACGGGA 58.938 50.000 0.00 0.00 0.00 5.14
2889 8959 1.539827 CAAGCCTTTTCCTTACACGGG 59.460 52.381 0.00 0.00 0.00 5.28
2890 8960 1.539827 CCAAGCCTTTTCCTTACACGG 59.460 52.381 0.00 0.00 0.00 4.94
2891 8961 2.500229 TCCAAGCCTTTTCCTTACACG 58.500 47.619 0.00 0.00 0.00 4.49
2892 8962 4.522789 TGAATCCAAGCCTTTTCCTTACAC 59.477 41.667 0.00 0.00 0.00 2.90
2893 8963 4.522789 GTGAATCCAAGCCTTTTCCTTACA 59.477 41.667 0.00 0.00 0.00 2.41
2894 8964 4.379499 CGTGAATCCAAGCCTTTTCCTTAC 60.379 45.833 0.00 0.00 0.00 2.34
2895 8965 3.756434 CGTGAATCCAAGCCTTTTCCTTA 59.244 43.478 0.00 0.00 0.00 2.69
2896 8966 2.558359 CGTGAATCCAAGCCTTTTCCTT 59.442 45.455 0.00 0.00 0.00 3.36
2897 8967 2.162681 CGTGAATCCAAGCCTTTTCCT 58.837 47.619 0.00 0.00 0.00 3.36
2898 8968 1.886542 ACGTGAATCCAAGCCTTTTCC 59.113 47.619 0.00 0.00 0.00 3.13
2899 8969 2.095212 GGACGTGAATCCAAGCCTTTTC 60.095 50.000 0.00 0.00 38.77 2.29
2900 8970 1.886542 GGACGTGAATCCAAGCCTTTT 59.113 47.619 0.00 0.00 38.77 2.27
2901 8971 1.202879 TGGACGTGAATCCAAGCCTTT 60.203 47.619 0.00 0.00 46.08 3.11
2902 8972 0.400213 TGGACGTGAATCCAAGCCTT 59.600 50.000 0.00 0.00 46.08 4.35
2903 8973 2.066340 TGGACGTGAATCCAAGCCT 58.934 52.632 0.00 0.00 46.08 4.58
2904 8974 4.713946 TGGACGTGAATCCAAGCC 57.286 55.556 0.00 0.00 46.08 4.35
2909 8979 1.905637 AGGGTTTTGGACGTGAATCC 58.094 50.000 0.00 0.00 39.45 3.01
2910 8980 3.671716 ACTAGGGTTTTGGACGTGAATC 58.328 45.455 0.00 0.00 0.00 2.52
2911 8981 3.071892 TGACTAGGGTTTTGGACGTGAAT 59.928 43.478 0.00 0.00 0.00 2.57
2912 8982 2.435069 TGACTAGGGTTTTGGACGTGAA 59.565 45.455 0.00 0.00 0.00 3.18
2913 8983 2.040939 TGACTAGGGTTTTGGACGTGA 58.959 47.619 0.00 0.00 0.00 4.35
2914 8984 2.536761 TGACTAGGGTTTTGGACGTG 57.463 50.000 0.00 0.00 0.00 4.49
2915 8985 3.564053 TTTGACTAGGGTTTTGGACGT 57.436 42.857 0.00 0.00 0.00 4.34
2916 8986 4.378046 CGAATTTGACTAGGGTTTTGGACG 60.378 45.833 0.00 0.00 0.00 4.79
2917 8987 4.082949 CCGAATTTGACTAGGGTTTTGGAC 60.083 45.833 0.00 0.00 0.00 4.02
2918 8988 4.076394 CCGAATTTGACTAGGGTTTTGGA 58.924 43.478 0.00 0.00 0.00 3.53
2919 8989 4.076394 TCCGAATTTGACTAGGGTTTTGG 58.924 43.478 0.00 0.00 0.00 3.28
2920 8990 5.897377 ATCCGAATTTGACTAGGGTTTTG 57.103 39.130 0.00 0.00 0.00 2.44
2921 8991 5.185056 CCAATCCGAATTTGACTAGGGTTTT 59.815 40.000 0.00 0.00 0.00 2.43
2922 8992 4.705023 CCAATCCGAATTTGACTAGGGTTT 59.295 41.667 0.00 0.00 0.00 3.27
2923 8993 4.263771 ACCAATCCGAATTTGACTAGGGTT 60.264 41.667 0.00 0.00 0.00 4.11
2924 8994 3.265995 ACCAATCCGAATTTGACTAGGGT 59.734 43.478 0.00 0.00 0.00 4.34
2925 8995 3.886123 ACCAATCCGAATTTGACTAGGG 58.114 45.455 0.00 0.00 0.00 3.53
2926 8996 5.897377 AAACCAATCCGAATTTGACTAGG 57.103 39.130 0.00 0.00 0.00 3.02
2927 8997 8.129211 GGATAAAACCAATCCGAATTTGACTAG 58.871 37.037 0.00 0.00 33.95 2.57
2928 8998 7.992008 GGATAAAACCAATCCGAATTTGACTA 58.008 34.615 0.00 0.00 33.95 2.59
2929 8999 6.863275 GGATAAAACCAATCCGAATTTGACT 58.137 36.000 0.00 0.00 33.95 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.