Multiple sequence alignment - TraesCS1B01G119100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G119100 chr1B 100.000 6682 0 0 1 6682 140301604 140294923 0.000000e+00 12340
1 TraesCS1B01G119100 chr1B 96.429 112 4 0 6460 6571 683469670 683469559 1.140000e-42 185
2 TraesCS1B01G119100 chr1B 93.137 102 5 2 6063 6164 426463803 426463902 1.500000e-31 148
3 TraesCS1B01G119100 chr1D 95.446 2723 86 16 3385 6081 87093910 87091200 0.000000e+00 4307
4 TraesCS1B01G119100 chr1D 92.445 1959 75 29 833 2738 87096384 87094446 0.000000e+00 2730
5 TraesCS1B01G119100 chr1D 92.623 488 25 8 2907 3384 87094429 87093943 0.000000e+00 691
6 TraesCS1B01G119100 chr1D 89.716 564 21 16 266 824 87097030 87096499 0.000000e+00 686
7 TraesCS1B01G119100 chr1D 95.033 302 14 1 6163 6464 87091201 87090901 2.180000e-129 473
8 TraesCS1B01G119100 chr1D 85.484 248 16 7 30 274 87097305 87097075 2.410000e-59 241
9 TraesCS1B01G119100 chr1D 91.453 117 10 0 6566 6682 87090904 87090788 1.930000e-35 161
10 TraesCS1B01G119100 chr1A 95.039 2721 88 18 3385 6081 82949999 82947302 0.000000e+00 4233
11 TraesCS1B01G119100 chr1A 92.453 2491 102 37 363 2818 82953080 82950641 0.000000e+00 3480
12 TraesCS1B01G119100 chr1A 92.270 608 37 7 2786 3384 82950638 82950032 0.000000e+00 854
13 TraesCS1B01G119100 chr1A 83.804 531 53 21 6163 6682 82947303 82946795 2.180000e-129 473
14 TraesCS1B01G119100 chr1A 91.351 185 13 3 30 213 82955214 82955032 4.000000e-62 250
15 TraesCS1B01G119100 chr4B 96.522 115 4 0 6457 6571 452855078 452854964 2.460000e-44 191
16 TraesCS1B01G119100 chr7D 95.041 121 5 1 6461 6580 382742535 382742655 8.850000e-44 189
17 TraesCS1B01G119100 chr7D 94.898 98 3 2 6075 6172 622185060 622185155 1.160000e-32 152
18 TraesCS1B01G119100 chr7D 93.939 99 5 1 6071 6168 540399151 540399249 1.500000e-31 148
19 TraesCS1B01G119100 chr5D 94.309 123 7 0 6457 6579 555341060 555341182 8.850000e-44 189
20 TraesCS1B01G119100 chr6D 97.273 110 3 0 6460 6569 397359925 397359816 3.180000e-43 187
21 TraesCS1B01G119100 chr6B 96.460 113 4 0 6457 6569 460495296 460495408 3.180000e-43 187
22 TraesCS1B01G119100 chr2B 95.652 115 5 0 6457 6571 43851203 43851089 1.140000e-42 185
23 TraesCS1B01G119100 chr7A 95.652 115 4 1 6455 6569 706988242 706988129 4.120000e-42 183
24 TraesCS1B01G119100 chr7A 91.429 105 6 2 6080 6181 32008471 32008575 2.510000e-29 141
25 TraesCS1B01G119100 chr4A 93.496 123 8 0 6463 6585 656483089 656482967 4.120000e-42 183
26 TraesCS1B01G119100 chr6A 95.789 95 4 0 6076 6170 152028467 152028373 3.230000e-33 154
27 TraesCS1B01G119100 chrUn 94.737 95 4 1 6076 6170 37006360 37006453 5.400000e-31 147
28 TraesCS1B01G119100 chrUn 94.737 95 4 1 6076 6170 38258581 38258674 5.400000e-31 147
29 TraesCS1B01G119100 chrUn 94.737 95 4 1 6076 6170 196709649 196709556 5.400000e-31 147
30 TraesCS1B01G119100 chr5B 88.596 114 11 2 6080 6193 661300473 661300362 3.250000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G119100 chr1B 140294923 140301604 6681 True 12340 12340 100.000000 1 6682 1 chr1B.!!$R1 6681
1 TraesCS1B01G119100 chr1D 87090788 87097305 6517 True 1327 4307 91.742857 30 6682 7 chr1D.!!$R1 6652
2 TraesCS1B01G119100 chr1A 82946795 82955214 8419 True 1858 4233 90.983400 30 6682 5 chr1A.!!$R1 6652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 2485 1.752498 AGGACAACGACAGTACACACA 59.248 47.619 0.00 0.00 0.00 3.72 F
1421 3377 1.414181 GATGATCGCCTCCTCCTTCAA 59.586 52.381 0.00 0.00 0.00 2.69 F
2437 4409 0.107165 AGCTTGCGGGAATCCCTTAC 60.107 55.000 17.45 6.34 42.67 2.34 F
3505 5564 0.239347 CTTGTTGCTGCTGTGGCTAC 59.761 55.000 0.00 0.00 39.59 3.58 F
3890 5964 0.377203 GTAACGCCATAGCCAAGTGC 59.623 55.000 0.00 0.00 41.71 4.40 F
3891 5965 0.746563 TAACGCCATAGCCAAGTGCC 60.747 55.000 0.00 0.00 42.71 5.01 F
4769 6845 1.063266 TGGTTTTCTGCCCCTTTCAGT 60.063 47.619 0.00 0.00 33.48 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 3913 0.166597 ACGCTCACACAATGCAATCG 59.833 50.000 0.00 0.00 0.00 3.34 R
3340 5364 0.317160 TCCATAACTATGAGGCGGCG 59.683 55.000 0.51 0.51 35.75 6.46 R
3889 5963 0.537371 AACTGCAGGTACACTTGGGC 60.537 55.000 19.93 0.00 0.00 5.36 R
4457 6533 1.216064 ATGCTGGCAGGTAATCTGGA 58.784 50.000 17.64 0.00 43.54 3.86 R
4919 6999 1.273267 ACAGCTAGACCATGGTCCTCA 60.273 52.381 36.09 22.48 45.59 3.86 R
4940 7020 1.767654 TACTGCAAGAGCCTGCCACA 61.768 55.000 0.00 0.00 41.90 4.17 R
6461 8649 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.880878 TCTAAAAGCAACTAATTTTGGGAAAC 57.119 30.769 0.00 0.00 30.45 2.78
160 163 9.221933 ACTACTATATCCATACGAGTTCTTCTG 57.778 37.037 0.00 0.00 0.00 3.02
191 194 9.471084 GTATGTTTGGTTTGTAAAAGCTTGTAT 57.529 29.630 0.00 0.00 0.00 2.29
244 247 5.834169 TCGTAAAACATCAAAAAGTTCCCC 58.166 37.500 0.00 0.00 0.00 4.81
258 261 4.186856 AGTTCCCCACAAAATTTATGCG 57.813 40.909 0.00 0.00 0.00 4.73
270 327 5.799681 AAATTTATGCGGGCAATTTCAAG 57.200 34.783 0.00 0.00 0.00 3.02
334 1332 3.071874 TGAAGGCTGGGTTGAGTTATG 57.928 47.619 0.00 0.00 0.00 1.90
464 2270 3.660621 GCTGAAACAAGCGCCTCT 58.339 55.556 2.29 0.00 32.56 3.69
499 2305 4.536090 AGTTCCATCACTGTTCATTCCCTA 59.464 41.667 0.00 0.00 0.00 3.53
523 2329 3.764466 CTCGCTCGCTCACCCCTT 61.764 66.667 0.00 0.00 0.00 3.95
589 2397 8.981647 GCAAACAAATAAATCTGAAACAGTGAT 58.018 29.630 0.00 0.00 32.61 3.06
656 2464 6.014156 TCTCCTCTCCCTAGAAAGAAAACAAG 60.014 42.308 0.00 0.00 0.00 3.16
671 2479 4.395959 AAACAAGAGGACAACGACAGTA 57.604 40.909 0.00 0.00 0.00 2.74
672 2480 3.366440 ACAAGAGGACAACGACAGTAC 57.634 47.619 0.00 0.00 0.00 2.73
673 2481 2.691526 ACAAGAGGACAACGACAGTACA 59.308 45.455 0.00 0.00 0.00 2.90
674 2482 3.050619 CAAGAGGACAACGACAGTACAC 58.949 50.000 0.00 0.00 0.00 2.90
675 2483 2.304092 AGAGGACAACGACAGTACACA 58.696 47.619 0.00 0.00 0.00 3.72
676 2484 2.034305 AGAGGACAACGACAGTACACAC 59.966 50.000 0.00 0.00 0.00 3.82
677 2485 1.752498 AGGACAACGACAGTACACACA 59.248 47.619 0.00 0.00 0.00 3.72
678 2486 2.166870 AGGACAACGACAGTACACACAA 59.833 45.455 0.00 0.00 0.00 3.33
679 2487 2.283351 GGACAACGACAGTACACACAAC 59.717 50.000 0.00 0.00 0.00 3.32
680 2488 2.924926 GACAACGACAGTACACACAACA 59.075 45.455 0.00 0.00 0.00 3.33
681 2489 3.327626 ACAACGACAGTACACACAACAA 58.672 40.909 0.00 0.00 0.00 2.83
682 2490 3.369756 ACAACGACAGTACACACAACAAG 59.630 43.478 0.00 0.00 0.00 3.16
683 2491 3.513680 ACGACAGTACACACAACAAGA 57.486 42.857 0.00 0.00 0.00 3.02
684 2492 3.444916 ACGACAGTACACACAACAAGAG 58.555 45.455 0.00 0.00 0.00 2.85
685 2493 2.794910 CGACAGTACACACAACAAGAGG 59.205 50.000 0.00 0.00 0.00 3.69
686 2494 3.490249 CGACAGTACACACAACAAGAGGA 60.490 47.826 0.00 0.00 0.00 3.71
687 2495 3.793559 ACAGTACACACAACAAGAGGAC 58.206 45.455 0.00 0.00 0.00 3.85
688 2496 3.196901 ACAGTACACACAACAAGAGGACA 59.803 43.478 0.00 0.00 0.00 4.02
689 2497 4.188462 CAGTACACACAACAAGAGGACAA 58.812 43.478 0.00 0.00 0.00 3.18
690 2498 4.034048 CAGTACACACAACAAGAGGACAAC 59.966 45.833 0.00 0.00 0.00 3.32
691 2499 2.006888 ACACACAACAAGAGGACAACG 58.993 47.619 0.00 0.00 0.00 4.10
692 2500 2.276201 CACACAACAAGAGGACAACGA 58.724 47.619 0.00 0.00 0.00 3.85
693 2501 2.030457 CACACAACAAGAGGACAACGAC 59.970 50.000 0.00 0.00 0.00 4.34
694 2502 2.276201 CACAACAAGAGGACAACGACA 58.724 47.619 0.00 0.00 0.00 4.35
695 2503 2.285220 CACAACAAGAGGACAACGACAG 59.715 50.000 0.00 0.00 0.00 3.51
696 2504 2.093658 ACAACAAGAGGACAACGACAGT 60.094 45.455 0.00 0.00 0.00 3.55
707 2515 2.124903 CAACGACAGTACACACTCACC 58.875 52.381 0.00 0.00 30.46 4.02
821 2633 2.450243 GTGAGGGTGAGGGGAGGA 59.550 66.667 0.00 0.00 0.00 3.71
1386 3342 3.112075 AAGCGCATGGTCGTCACG 61.112 61.111 11.47 0.00 0.00 4.35
1421 3377 1.414181 GATGATCGCCTCCTCCTTCAA 59.586 52.381 0.00 0.00 0.00 2.69
1572 3528 2.227626 GTGCTTCTTTGCTTCCTTCTCC 59.772 50.000 0.00 0.00 0.00 3.71
1574 3530 3.327757 TGCTTCTTTGCTTCCTTCTCCTA 59.672 43.478 0.00 0.00 0.00 2.94
1622 3578 3.004315 TGAGCTTTCGGTTTTTGTGATCC 59.996 43.478 0.00 0.00 0.00 3.36
1639 3595 5.163248 TGTGATCCAACTAGTTCTTGGTTCA 60.163 40.000 16.72 16.72 41.84 3.18
1682 3648 6.578023 TCCTCAAAATGGTTCAACGATTTTT 58.422 32.000 17.76 4.65 41.54 1.94
1723 3689 3.174573 GTGCGCGCTTCATTTGGC 61.175 61.111 33.29 7.01 0.00 4.52
1725 3691 2.877582 GCGCGCTTCATTTGGCAG 60.878 61.111 26.67 0.00 0.00 4.85
1733 3699 3.062042 GCTTCATTTGGCAGTTCTTTGG 58.938 45.455 0.00 0.00 0.00 3.28
1843 3809 8.769891 GTTATTTCTCTCCTAATAAGCTCAAGC 58.230 37.037 0.00 0.00 42.49 4.01
1872 3838 2.059541 GTGCTAGTCAAACGAGTGTCC 58.940 52.381 0.00 0.00 0.00 4.02
1903 3869 3.004024 AGCTTTGAACTGTGATTTGCG 57.996 42.857 0.00 0.00 0.00 4.85
1945 3913 1.067354 CAGAAGCTTTGGCCCATGTTC 60.067 52.381 0.00 0.00 39.73 3.18
1963 3931 0.443478 TCGATTGCATTGTGTGAGCG 59.557 50.000 0.00 0.00 0.00 5.03
1976 3944 0.524392 GTGAGCGTGATCTCTCGTGG 60.524 60.000 0.00 0.00 35.55 4.94
2050 4018 4.463891 TGGATGCATCCCTTTTTCTCTTTC 59.536 41.667 36.97 12.20 46.59 2.62
2162 4130 1.880340 GCACCGGATCTCGCTTGAG 60.880 63.158 9.46 0.00 41.33 3.02
2215 4183 0.814457 GTGTGTTTGTGGACTTGCCA 59.186 50.000 0.00 0.00 46.96 4.92
2295 4263 4.340617 TGGATTCCCATTACTGTGGTTTC 58.659 43.478 0.00 0.00 37.58 2.78
2298 4266 2.354328 TCCCATTACTGTGGTTTCCCT 58.646 47.619 0.00 0.00 37.57 4.20
2299 4267 2.719705 TCCCATTACTGTGGTTTCCCTT 59.280 45.455 0.00 0.00 37.57 3.95
2342 4310 4.414846 AGGGAGAATGTGATATTTGCTCCT 59.585 41.667 0.00 0.00 40.14 3.69
2375 4343 5.567037 TGCCTGCATATAATGGACTAGTT 57.433 39.130 0.00 0.00 0.00 2.24
2437 4409 0.107165 AGCTTGCGGGAATCCCTTAC 60.107 55.000 17.45 6.34 42.67 2.34
2499 4475 5.319043 AGGAACTTGAAGGATTTGGTACA 57.681 39.130 0.00 0.00 27.25 2.90
2500 4476 5.892348 AGGAACTTGAAGGATTTGGTACAT 58.108 37.500 0.00 0.00 31.46 2.29
2501 4477 7.027874 AGGAACTTGAAGGATTTGGTACATA 57.972 36.000 0.00 0.00 31.46 2.29
2502 4478 6.884836 AGGAACTTGAAGGATTTGGTACATAC 59.115 38.462 0.00 0.00 31.46 2.39
2508 4484 7.315247 TGAAGGATTTGGTACATACGAATTG 57.685 36.000 0.00 0.00 39.30 2.32
2540 4516 7.792374 AATCCATAGTACTTAATGTGCACAG 57.208 36.000 25.84 13.81 33.54 3.66
2565 4541 6.668323 CCAGTACTGTTTCGATTGTTTTGAT 58.332 36.000 21.18 0.00 0.00 2.57
2587 4563 8.383318 TGATTGATAGGAAAGTATTAAGCTGC 57.617 34.615 0.00 0.00 0.00 5.25
2659 4638 5.011023 TGTGCAAACATAGAAGAGAGTCTGA 59.989 40.000 0.00 0.00 0.00 3.27
2660 4639 5.928839 GTGCAAACATAGAAGAGAGTCTGAA 59.071 40.000 0.00 0.00 0.00 3.02
2661 4640 5.928839 TGCAAACATAGAAGAGAGTCTGAAC 59.071 40.000 0.00 0.00 0.00 3.18
2662 4641 6.162777 GCAAACATAGAAGAGAGTCTGAACT 58.837 40.000 0.00 0.00 38.88 3.01
2697 4677 8.562892 ACTGAATGTGCATTGTTATATTCTAGC 58.437 33.333 1.77 0.00 0.00 3.42
2701 4681 5.764686 TGTGCATTGTTATATTCTAGCCCAG 59.235 40.000 0.00 0.00 0.00 4.45
2712 4692 9.669024 TTATATTCTAGCCCAGTGCCATATATA 57.331 33.333 0.00 0.00 42.71 0.86
2713 4693 6.891306 ATTCTAGCCCAGTGCCATATATAA 57.109 37.500 0.00 0.00 42.71 0.98
2806 4786 3.661944 TCGTCGAGAAAGAGAGTACAGT 58.338 45.455 0.00 0.00 0.00 3.55
2875 4890 4.023707 GTGTTCTGTTGATTCTTGGACCTG 60.024 45.833 0.00 0.00 0.00 4.00
2924 4939 7.036220 TCTCATGTCTTCGTCCTAGAAAATTC 58.964 38.462 0.00 0.00 0.00 2.17
2932 4947 5.877031 TCGTCCTAGAAAATTCTGACTACG 58.123 41.667 5.93 9.79 38.19 3.51
2945 4960 4.576879 TCTGACTACGTAGATGTGAGTGT 58.423 43.478 28.74 3.70 0.00 3.55
2950 4965 0.984829 CGTAGATGTGAGTGTGCACG 59.015 55.000 13.13 0.00 41.63 5.34
2967 4982 3.443329 TGCACGCTTTGTATCATTTGGAT 59.557 39.130 0.00 0.00 40.14 3.41
2972 4987 5.184864 ACGCTTTGTATCATTTGGATTGGAA 59.815 36.000 0.00 0.00 37.44 3.53
3005 5020 8.165239 AGTAATGCAATGTAGTTTGTCAGAAA 57.835 30.769 0.00 0.00 0.00 2.52
3086 5101 9.958180 TGATGAAGTCCTCAATATCTTGTTTTA 57.042 29.630 0.00 0.00 37.67 1.52
3126 5141 6.966534 AACATAATTGAATCTAAGCTGGGG 57.033 37.500 0.00 0.00 0.00 4.96
3146 5161 8.138074 GCTGGGGAGTTCATATTATTTTTCTTC 58.862 37.037 0.00 0.00 0.00 2.87
3215 5234 5.047731 GGGCCAGCTTTAGATCCAATTTATC 60.048 44.000 4.39 0.00 0.00 1.75
3220 5239 6.017605 CAGCTTTAGATCCAATTTATCGCAGT 60.018 38.462 0.00 0.00 0.00 4.40
3306 5326 3.960102 TGTCAGCCAAGAAAAACCTGATT 59.040 39.130 0.00 0.00 35.30 2.57
3307 5327 5.136828 TGTCAGCCAAGAAAAACCTGATTA 58.863 37.500 0.00 0.00 35.30 1.75
3308 5328 5.009610 TGTCAGCCAAGAAAAACCTGATTAC 59.990 40.000 0.00 0.00 35.30 1.89
3309 5329 4.522789 TCAGCCAAGAAAAACCTGATTACC 59.477 41.667 0.00 0.00 0.00 2.85
3325 5349 9.125026 ACCTGATTACCTTATTTTGCATCTAAG 57.875 33.333 0.00 0.00 0.00 2.18
3340 5364 5.163301 TGCATCTAAGATAAGTTCCTGGACC 60.163 44.000 0.00 0.00 0.00 4.46
3352 5376 3.506059 CTGGACCGCCGCCTCATAG 62.506 68.421 0.00 0.00 36.79 2.23
3354 5378 2.499685 GACCGCCGCCTCATAGTT 59.500 61.111 0.00 0.00 0.00 2.24
3368 5392 6.016192 CGCCTCATAGTTATGGAGACTTTAGA 60.016 42.308 0.00 0.00 34.50 2.10
3373 5397 8.642432 TCATAGTTATGGAGACTTTAGATGTGG 58.358 37.037 0.00 0.00 34.50 4.17
3443 5499 7.826690 TCTATTGTTACCTTTTTCATTGCTCC 58.173 34.615 0.00 0.00 0.00 4.70
3477 5533 2.595386 GGTTTGCTTGTGCTTTATCCG 58.405 47.619 0.00 0.00 40.48 4.18
3478 5534 1.985684 GTTTGCTTGTGCTTTATCCGC 59.014 47.619 0.00 0.00 40.48 5.54
3505 5564 0.239347 CTTGTTGCTGCTGTGGCTAC 59.761 55.000 0.00 0.00 39.59 3.58
3603 5662 4.388773 GCAAAGGCAAAGCAAACCTTATAC 59.611 41.667 0.00 0.00 42.99 1.47
3613 5672 3.682858 GCAAACCTTATACGCTGAAGACA 59.317 43.478 0.00 0.00 0.00 3.41
3621 5680 7.064728 ACCTTATACGCTGAAGACAGATTTTTC 59.935 37.037 0.00 0.00 46.03 2.29
3628 5687 6.032717 GCTGAAGACAGATTTTTCCTAATGC 58.967 40.000 0.00 0.00 46.03 3.56
3682 5749 9.095065 ACGTAAATCATATAACTTGTTCCAGAC 57.905 33.333 0.00 0.00 0.00 3.51
3700 5767 1.410517 GACGGCTCAATCTCCATGAGA 59.589 52.381 7.67 0.00 45.74 3.27
3716 5783 8.539544 TCTCCATGAGACTCTAGATACTAGATG 58.460 40.741 3.68 2.76 33.35 2.90
3744 5811 8.905702 CACTAATTTACTGCAAATGTTGACTTC 58.094 33.333 0.00 0.00 36.93 3.01
3752 5819 7.319646 ACTGCAAATGTTGACTTCAAAGTTTA 58.680 30.769 0.00 0.00 39.88 2.01
3760 5827 5.734855 TGACTTCAAAGTTTACTGAGCAC 57.265 39.130 0.00 0.00 39.88 4.40
3761 5828 5.182487 TGACTTCAAAGTTTACTGAGCACA 58.818 37.500 0.00 0.00 39.88 4.57
3762 5829 5.064707 TGACTTCAAAGTTTACTGAGCACAC 59.935 40.000 0.00 0.00 39.88 3.82
3767 5841 6.090129 TCAAAGTTTACTGAGCACACAAAAC 58.910 36.000 7.91 7.91 0.00 2.43
3856 5930 8.459521 TGTTTTATTTGCTGTATCCATTTTCG 57.540 30.769 0.00 0.00 0.00 3.46
3888 5962 2.483014 TTGTAACGCCATAGCCAAGT 57.517 45.000 0.00 0.00 34.57 3.16
3889 5963 1.732941 TGTAACGCCATAGCCAAGTG 58.267 50.000 0.00 0.00 34.57 3.16
3890 5964 0.377203 GTAACGCCATAGCCAAGTGC 59.623 55.000 0.00 0.00 41.71 4.40
3891 5965 0.746563 TAACGCCATAGCCAAGTGCC 60.747 55.000 0.00 0.00 42.71 5.01
3892 5966 3.211963 CGCCATAGCCAAGTGCCC 61.212 66.667 0.00 0.00 42.71 5.36
3893 5967 2.044053 GCCATAGCCAAGTGCCCA 60.044 61.111 0.00 0.00 42.71 5.36
3894 5968 1.682005 GCCATAGCCAAGTGCCCAA 60.682 57.895 0.00 0.00 42.71 4.12
3895 5969 1.669999 GCCATAGCCAAGTGCCCAAG 61.670 60.000 0.00 0.00 42.71 3.61
3956 6030 6.458342 GCCTTAATTCTTCCACCAAATACTCG 60.458 42.308 0.00 0.00 0.00 4.18
3957 6031 4.965119 AATTCTTCCACCAAATACTCGC 57.035 40.909 0.00 0.00 0.00 5.03
3982 6056 4.580167 TGGACTTTGTTTCTCAAGTGATGG 59.420 41.667 0.00 0.00 37.35 3.51
3991 6065 5.545063 TTCTCAAGTGATGGTAGTGTTGA 57.455 39.130 0.00 0.00 0.00 3.18
4032 6106 4.765856 ACTCTTGCTCTGCTTTCATCATTT 59.234 37.500 0.00 0.00 0.00 2.32
4062 6136 2.734755 TGGTTCATGGCCTATCCTTG 57.265 50.000 3.32 0.00 40.38 3.61
4166 6242 4.072131 GTCATTGGCTCAGTTACTTTCCA 58.928 43.478 0.00 0.00 0.00 3.53
4180 6256 8.507249 CAGTTACTTTCCAGAATCCTTTACTTG 58.493 37.037 0.00 0.00 0.00 3.16
4227 6303 4.567747 GCTTAGAAGGGGAGGTCAATTTCA 60.568 45.833 0.00 0.00 0.00 2.69
4235 6311 4.506802 GGGGAGGTCAATTTCACTGTACTT 60.507 45.833 0.00 0.00 0.00 2.24
4361 6437 3.222603 AGAACTCGGAACTGGCAAATTT 58.777 40.909 0.00 0.00 0.00 1.82
4364 6440 2.296190 ACTCGGAACTGGCAAATTTTCC 59.704 45.455 0.00 0.00 35.16 3.13
4397 6473 5.475909 TCATTCAGATCTCTTTGCAAAGCTT 59.524 36.000 30.35 18.43 35.99 3.74
4457 6533 2.037847 GGGGCTTGGGATGCTGTT 59.962 61.111 0.00 0.00 0.00 3.16
4499 6575 2.479566 ACTGTGTATGTGAAGGCCTG 57.520 50.000 5.69 0.00 0.00 4.85
4508 6584 1.421268 TGTGAAGGCCTGACATCACTT 59.579 47.619 27.49 2.28 42.03 3.16
4538 6614 4.840005 GCTACTGTGCGAGGCCCC 62.840 72.222 0.00 0.00 0.00 5.80
4610 6686 6.258068 GGGTATGCTACTTGTGCTTTTAGTAG 59.742 42.308 0.00 0.00 42.61 2.57
4611 6687 7.039882 GGTATGCTACTTGTGCTTTTAGTAGA 58.960 38.462 11.53 0.00 42.42 2.59
4631 6707 8.554490 AGTAGATATCAACTTCAATACCCACT 57.446 34.615 5.32 0.00 0.00 4.00
4663 6739 8.224389 TGCAAATATACACTCACATTGCTTAT 57.776 30.769 8.75 0.00 41.53 1.73
4682 6758 8.406730 TGCTTATGTGAATATTGCCATGAATA 57.593 30.769 0.00 0.00 0.00 1.75
4684 6760 7.756722 GCTTATGTGAATATTGCCATGAATACC 59.243 37.037 0.00 0.00 0.00 2.73
4689 6765 7.506599 TGTGAATATTGCCATGAATACCTGATT 59.493 33.333 0.00 0.00 0.00 2.57
4691 6767 9.585369 TGAATATTGCCATGAATACCTGATTAA 57.415 29.630 0.00 0.00 0.00 1.40
4694 6770 7.844493 ATTGCCATGAATACCTGATTAATGT 57.156 32.000 0.00 0.00 35.30 2.71
4695 6771 6.882610 TGCCATGAATACCTGATTAATGTC 57.117 37.500 0.00 0.00 35.30 3.06
4698 6774 6.939163 GCCATGAATACCTGATTAATGTCTCT 59.061 38.462 0.00 0.00 35.30 3.10
4706 6782 7.913674 ACCTGATTAATGTCTCTCTTTGAAC 57.086 36.000 0.00 0.00 0.00 3.18
4707 6783 7.453393 ACCTGATTAATGTCTCTCTTTGAACA 58.547 34.615 0.00 0.00 0.00 3.18
4733 6809 3.447586 GCTAGGATCTCCGTATTGGCATA 59.552 47.826 0.00 0.00 42.08 3.14
4767 6843 2.397044 ATGGTTTTCTGCCCCTTTCA 57.603 45.000 0.00 0.00 0.00 2.69
4768 6844 1.703411 TGGTTTTCTGCCCCTTTCAG 58.297 50.000 0.00 0.00 0.00 3.02
4769 6845 1.063266 TGGTTTTCTGCCCCTTTCAGT 60.063 47.619 0.00 0.00 33.48 3.41
4772 6848 3.457234 GTTTTCTGCCCCTTTCAGTTTG 58.543 45.455 0.00 0.00 33.48 2.93
4774 6850 1.981256 TCTGCCCCTTTCAGTTTGTC 58.019 50.000 0.00 0.00 33.48 3.18
4775 6851 1.214175 TCTGCCCCTTTCAGTTTGTCA 59.786 47.619 0.00 0.00 33.48 3.58
4776 6852 2.031120 CTGCCCCTTTCAGTTTGTCAA 58.969 47.619 0.00 0.00 0.00 3.18
4777 6853 2.031120 TGCCCCTTTCAGTTTGTCAAG 58.969 47.619 0.00 0.00 0.00 3.02
4816 6896 1.064314 TGCCCCACAACAGTGTAGTTT 60.064 47.619 0.00 0.00 35.72 2.66
4817 6897 1.336755 GCCCCACAACAGTGTAGTTTG 59.663 52.381 0.00 0.00 35.72 2.93
4940 7020 1.834263 GAGGACCATGGTCTAGCTGTT 59.166 52.381 37.26 17.96 44.04 3.16
5402 7482 1.356124 AGAGCCTGAAGAAGCTGGAA 58.644 50.000 0.00 0.00 40.11 3.53
5606 7686 0.758734 CACTTCCGGATGATAGCCCA 59.241 55.000 23.15 0.00 0.00 5.36
5651 7731 0.609131 CAATTGCCGGTCCAAGGTCT 60.609 55.000 1.90 0.00 0.00 3.85
5749 7829 3.857052 TCAACACCTTCCTAGCATAACG 58.143 45.455 0.00 0.00 0.00 3.18
5793 7873 0.038166 GGCTGGTGGTTGGATGAAGA 59.962 55.000 0.00 0.00 0.00 2.87
5808 7888 6.639563 TGGATGAAGATGTCGTAAAATCTCA 58.360 36.000 0.00 0.00 31.88 3.27
6079 8161 5.356190 CAGATTATGTGTTGTTCTGGATGCT 59.644 40.000 0.00 0.00 32.14 3.79
6080 8162 6.539826 CAGATTATGTGTTGTTCTGGATGCTA 59.460 38.462 0.00 0.00 32.14 3.49
6081 8163 6.540189 AGATTATGTGTTGTTCTGGATGCTAC 59.460 38.462 0.00 0.00 0.00 3.58
6082 8164 3.769739 TGTGTTGTTCTGGATGCTACT 57.230 42.857 0.00 0.00 0.00 2.57
6083 8165 3.664107 TGTGTTGTTCTGGATGCTACTC 58.336 45.455 0.00 0.00 0.00 2.59
6084 8166 3.003480 GTGTTGTTCTGGATGCTACTCC 58.997 50.000 0.00 0.00 35.74 3.85
6085 8167 2.027192 TGTTGTTCTGGATGCTACTCCC 60.027 50.000 0.00 0.00 34.12 4.30
6086 8168 2.237392 GTTGTTCTGGATGCTACTCCCT 59.763 50.000 0.00 0.00 34.12 4.20
6087 8169 2.111384 TGTTCTGGATGCTACTCCCTC 58.889 52.381 0.00 0.00 34.12 4.30
6088 8170 2.292521 TGTTCTGGATGCTACTCCCTCT 60.293 50.000 0.00 0.00 34.12 3.69
6089 8171 2.079170 TCTGGATGCTACTCCCTCTG 57.921 55.000 0.00 0.00 34.12 3.35
6090 8172 1.289231 TCTGGATGCTACTCCCTCTGT 59.711 52.381 0.00 0.00 34.12 3.41
6091 8173 1.686052 CTGGATGCTACTCCCTCTGTC 59.314 57.143 0.00 0.00 34.12 3.51
6092 8174 1.289231 TGGATGCTACTCCCTCTGTCT 59.711 52.381 0.00 0.00 34.12 3.41
6093 8175 1.960689 GGATGCTACTCCCTCTGTCTC 59.039 57.143 0.00 0.00 0.00 3.36
6094 8176 2.660572 GATGCTACTCCCTCTGTCTCA 58.339 52.381 0.00 0.00 0.00 3.27
6095 8177 2.604912 TGCTACTCCCTCTGTCTCAA 57.395 50.000 0.00 0.00 0.00 3.02
6096 8178 2.889512 TGCTACTCCCTCTGTCTCAAA 58.110 47.619 0.00 0.00 0.00 2.69
6097 8179 3.239449 TGCTACTCCCTCTGTCTCAAAA 58.761 45.455 0.00 0.00 0.00 2.44
6098 8180 3.840666 TGCTACTCCCTCTGTCTCAAAAT 59.159 43.478 0.00 0.00 0.00 1.82
6099 8181 5.023452 TGCTACTCCCTCTGTCTCAAAATA 58.977 41.667 0.00 0.00 0.00 1.40
6100 8182 5.663106 TGCTACTCCCTCTGTCTCAAAATAT 59.337 40.000 0.00 0.00 0.00 1.28
6101 8183 6.839134 TGCTACTCCCTCTGTCTCAAAATATA 59.161 38.462 0.00 0.00 0.00 0.86
6102 8184 7.344612 TGCTACTCCCTCTGTCTCAAAATATAA 59.655 37.037 0.00 0.00 0.00 0.98
6103 8185 7.870445 GCTACTCCCTCTGTCTCAAAATATAAG 59.130 40.741 0.00 0.00 0.00 1.73
6104 8186 7.979786 ACTCCCTCTGTCTCAAAATATAAGA 57.020 36.000 0.00 0.00 0.00 2.10
6105 8187 8.380742 ACTCCCTCTGTCTCAAAATATAAGAA 57.619 34.615 0.00 0.00 0.00 2.52
6106 8188 8.261522 ACTCCCTCTGTCTCAAAATATAAGAAC 58.738 37.037 0.00 0.00 0.00 3.01
6107 8189 7.265673 TCCCTCTGTCTCAAAATATAAGAACG 58.734 38.462 0.00 0.00 0.00 3.95
6108 8190 7.042335 CCCTCTGTCTCAAAATATAAGAACGT 58.958 38.462 0.00 0.00 0.00 3.99
6109 8191 7.549488 CCCTCTGTCTCAAAATATAAGAACGTT 59.451 37.037 0.00 0.00 0.00 3.99
6110 8192 8.936864 CCTCTGTCTCAAAATATAAGAACGTTT 58.063 33.333 0.46 0.00 0.00 3.60
6127 8209 9.925268 AAGAACGTTTTAAACACTACACTAATG 57.075 29.630 0.46 0.00 0.00 1.90
6128 8210 9.101655 AGAACGTTTTAAACACTACACTAATGT 57.898 29.630 0.46 0.00 43.30 2.71
6129 8211 9.361712 GAACGTTTTAAACACTACACTAATGTC 57.638 33.333 0.46 0.00 40.48 3.06
6130 8212 8.422973 ACGTTTTAAACACTACACTAATGTCA 57.577 30.769 8.61 0.00 40.48 3.58
6131 8213 8.881743 ACGTTTTAAACACTACACTAATGTCAA 58.118 29.630 8.61 0.00 40.48 3.18
6132 8214 9.705471 CGTTTTAAACACTACACTAATGTCAAA 57.295 29.630 8.61 0.00 40.48 2.69
6136 8218 9.705471 TTAAACACTACACTAATGTCAAAAACG 57.295 29.630 0.00 0.00 40.48 3.60
6137 8219 6.913873 ACACTACACTAATGTCAAAAACGT 57.086 33.333 0.00 0.00 40.48 3.99
6138 8220 7.311364 ACACTACACTAATGTCAAAAACGTT 57.689 32.000 0.00 0.00 40.48 3.99
6139 8221 7.404203 ACACTACACTAATGTCAAAAACGTTC 58.596 34.615 0.00 0.00 40.48 3.95
6140 8222 7.279313 ACACTACACTAATGTCAAAAACGTTCT 59.721 33.333 0.00 0.00 40.48 3.01
6141 8223 8.120465 CACTACACTAATGTCAAAAACGTTCTT 58.880 33.333 0.00 0.00 40.48 2.52
6142 8224 9.316730 ACTACACTAATGTCAAAAACGTTCTTA 57.683 29.630 0.00 0.00 40.48 2.10
6152 8234 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
6153 8235 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
6154 8236 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
6155 8237 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
6156 8238 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
6157 8239 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
6158 8240 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
6159 8241 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
6160 8242 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
6161 8243 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
6236 8318 1.228737 TGCCTGGCCTTGGGTTTAC 60.229 57.895 17.53 1.44 0.00 2.01
6263 8345 1.738030 GCATGGAAGCACAGATTTGCC 60.738 52.381 0.00 0.00 44.14 4.52
6277 8359 0.396060 TTTGCCCCTTGATTGCAACC 59.604 50.000 0.00 0.00 44.02 3.77
6373 8455 3.119029 TGCTTGGCTAATCAAAAGATGCC 60.119 43.478 0.00 0.00 40.62 4.40
6380 8462 5.751990 GGCTAATCAAAAGATGCCAAATGAG 59.248 40.000 0.00 0.00 40.04 2.90
6456 8538 5.969435 CAGATGTCACATGGAATTTCATTCG 59.031 40.000 0.00 0.00 40.17 3.34
6461 8649 6.313658 TGTCACATGGAATTTCATTCGTCTAG 59.686 38.462 0.00 0.00 40.17 2.43
6462 8650 6.313905 GTCACATGGAATTTCATTCGTCTAGT 59.686 38.462 0.00 0.00 40.17 2.57
6463 8651 7.491372 GTCACATGGAATTTCATTCGTCTAGTA 59.509 37.037 0.00 0.00 40.17 1.82
6464 8652 7.491372 TCACATGGAATTTCATTCGTCTAGTAC 59.509 37.037 0.00 0.00 40.17 2.73
6465 8653 7.492669 CACATGGAATTTCATTCGTCTAGTACT 59.507 37.037 0.00 0.00 40.17 2.73
6466 8654 7.707035 ACATGGAATTTCATTCGTCTAGTACTC 59.293 37.037 0.00 0.00 40.17 2.59
6467 8655 6.570692 TGGAATTTCATTCGTCTAGTACTCC 58.429 40.000 0.00 0.00 40.17 3.85
6468 8656 5.984323 GGAATTTCATTCGTCTAGTACTCCC 59.016 44.000 0.00 0.00 40.17 4.30
6469 8657 6.183360 GGAATTTCATTCGTCTAGTACTCCCT 60.183 42.308 0.00 0.00 40.17 4.20
6470 8658 5.831702 TTTCATTCGTCTAGTACTCCCTC 57.168 43.478 0.00 0.00 0.00 4.30
6471 8659 3.818180 TCATTCGTCTAGTACTCCCTCC 58.182 50.000 0.00 0.00 0.00 4.30
6472 8660 2.322355 TTCGTCTAGTACTCCCTCCG 57.678 55.000 0.00 0.00 0.00 4.63
6473 8661 1.198713 TCGTCTAGTACTCCCTCCGT 58.801 55.000 0.00 0.00 0.00 4.69
6474 8662 1.556911 TCGTCTAGTACTCCCTCCGTT 59.443 52.381 0.00 0.00 0.00 4.44
6475 8663 1.939255 CGTCTAGTACTCCCTCCGTTC 59.061 57.143 0.00 0.00 0.00 3.95
6476 8664 1.939255 GTCTAGTACTCCCTCCGTTCG 59.061 57.143 0.00 0.00 0.00 3.95
6477 8665 1.134280 TCTAGTACTCCCTCCGTTCGG 60.134 57.143 0.00 4.74 0.00 4.30
6478 8666 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
6479 8667 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
6480 8668 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
6481 8669 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
6482 8670 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6483 8671 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6484 8672 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6485 8673 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
6486 8674 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
6487 8675 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
6488 8676 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
6489 8677 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
6490 8678 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
6491 8679 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
6492 8680 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
6493 8681 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
6494 8682 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
6495 8683 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
6496 8684 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
6497 8685 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
6498 8686 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
6499 8687 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
6500 8688 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
6501 8689 7.223971 CGGAATTACTCGTCCAAGAAATGAATA 59.776 37.037 0.00 0.00 33.10 1.75
6502 8690 9.057089 GGAATTACTCGTCCAAGAAATGAATAT 57.943 33.333 0.00 0.00 33.79 1.28
6544 8732 9.691362 AGTTGTAAATACATCCATTTTTGTGAC 57.309 29.630 0.00 0.00 35.89 3.67
6545 8733 9.469807 GTTGTAAATACATCCATTTTTGTGACA 57.530 29.630 0.00 0.00 35.89 3.58
6547 8735 9.689976 TGTAAATACATCCATTTTTGTGACAAG 57.310 29.630 0.00 0.00 30.84 3.16
6548 8736 9.691362 GTAAATACATCCATTTTTGTGACAAGT 57.309 29.630 0.00 0.00 30.84 3.16
6553 8741 8.816640 ACATCCATTTTTGTGACAAGTAATTC 57.183 30.769 0.00 0.00 0.00 2.17
6554 8742 8.641541 ACATCCATTTTTGTGACAAGTAATTCT 58.358 29.630 0.00 0.00 0.00 2.40
6555 8743 8.918658 CATCCATTTTTGTGACAAGTAATTCTG 58.081 33.333 0.00 0.00 0.00 3.02
6556 8744 8.231692 TCCATTTTTGTGACAAGTAATTCTGA 57.768 30.769 0.00 0.00 0.00 3.27
6557 8745 8.690884 TCCATTTTTGTGACAAGTAATTCTGAA 58.309 29.630 0.00 0.00 0.00 3.02
6558 8746 8.755018 CCATTTTTGTGACAAGTAATTCTGAAC 58.245 33.333 0.00 0.00 0.00 3.18
6559 8747 7.962934 TTTTTGTGACAAGTAATTCTGAACG 57.037 32.000 0.00 0.00 0.00 3.95
6560 8748 5.666969 TTGTGACAAGTAATTCTGAACGG 57.333 39.130 0.00 0.00 0.00 4.44
6561 8749 4.951254 TGTGACAAGTAATTCTGAACGGA 58.049 39.130 0.00 0.00 0.00 4.69
6562 8750 4.988540 TGTGACAAGTAATTCTGAACGGAG 59.011 41.667 0.00 0.00 0.00 4.63
6563 8751 4.389077 GTGACAAGTAATTCTGAACGGAGG 59.611 45.833 0.00 0.00 0.00 4.30
6564 8752 3.933332 GACAAGTAATTCTGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
6565 8753 3.581332 ACAAGTAATTCTGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
6588 8776 8.529476 GGGAGTAGTTTGTAAGAGAAACATCTA 58.471 37.037 0.00 0.00 36.03 1.98
6595 8783 9.262358 GTTTGTAAGAGAAACATCTACAGTTCT 57.738 33.333 0.00 0.00 34.13 3.01
6598 8786 8.300286 TGTAAGAGAAACATCTACAGTTCTCAG 58.700 37.037 13.15 0.00 31.52 3.35
6603 8791 7.379750 AGAAACATCTACAGTTCTCAGTTACC 58.620 38.462 0.00 0.00 0.00 2.85
6606 8794 5.186021 ACATCTACAGTTCTCAGTTACCTGG 59.814 44.000 0.00 0.00 39.31 4.45
6625 8813 1.334419 GGGATTGATTGCGATTGAGCG 60.334 52.381 0.00 0.00 40.67 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.423349 CCATGGATGTTGTATTTAACCATTCAT 58.577 33.333 5.56 0.00 34.96 2.57
10 11 7.398618 ACCATGGATGTTGTATTTAACCATTCA 59.601 33.333 21.47 0.00 34.96 2.57
11 12 7.781056 ACCATGGATGTTGTATTTAACCATTC 58.219 34.615 21.47 0.00 34.96 2.67
12 13 7.732222 ACCATGGATGTTGTATTTAACCATT 57.268 32.000 21.47 0.00 34.96 3.16
13 14 8.830915 TTACCATGGATGTTGTATTTAACCAT 57.169 30.769 21.47 0.00 37.16 3.55
14 15 8.651589 TTTACCATGGATGTTGTATTTAACCA 57.348 30.769 21.47 0.00 0.00 3.67
23 24 8.811017 TGTTTCATAATTTACCATGGATGTTGT 58.189 29.630 21.47 3.20 0.00 3.32
24 25 9.820725 ATGTTTCATAATTTACCATGGATGTTG 57.179 29.630 21.47 6.59 0.00 3.33
27 28 9.611284 CGTATGTTTCATAATTTACCATGGATG 57.389 33.333 21.47 10.70 0.00 3.51
28 29 9.567776 TCGTATGTTTCATAATTTACCATGGAT 57.432 29.630 21.47 5.32 0.00 3.41
58 59 8.478877 TGTTTCCCAAAATTAGTTGCTTTTAGA 58.521 29.630 0.00 0.00 0.00 2.10
83 84 3.266510 TGGTAGCTGCCAGAACTATTG 57.733 47.619 20.78 0.00 33.97 1.90
138 141 6.914259 TGCAGAAGAACTCGTATGGATATAG 58.086 40.000 0.00 0.00 0.00 1.31
149 152 3.589988 ACATACCTTGCAGAAGAACTCG 58.410 45.455 0.00 0.00 0.00 4.18
153 156 4.469657 ACCAAACATACCTTGCAGAAGAA 58.530 39.130 0.00 0.00 0.00 2.52
160 163 6.292649 GCTTTTACAAACCAAACATACCTTGC 60.293 38.462 0.00 0.00 0.00 4.01
217 220 7.490079 GGGAACTTTTTGATGTTTTACGAGTTT 59.510 33.333 0.00 0.00 0.00 2.66
218 221 6.976349 GGGAACTTTTTGATGTTTTACGAGTT 59.024 34.615 0.00 0.00 0.00 3.01
220 223 5.918576 GGGGAACTTTTTGATGTTTTACGAG 59.081 40.000 0.00 0.00 0.00 4.18
221 224 5.360144 TGGGGAACTTTTTGATGTTTTACGA 59.640 36.000 0.00 0.00 0.00 3.43
222 225 5.460748 GTGGGGAACTTTTTGATGTTTTACG 59.539 40.000 0.00 0.00 0.00 3.18
237 240 4.186856 CGCATAAATTTTGTGGGGAACT 57.813 40.909 13.04 0.00 32.38 3.01
244 247 4.943142 AATTGCCCGCATAAATTTTGTG 57.057 36.364 0.00 1.83 0.00 3.33
258 261 1.067635 ACATGTCGCTTGAAATTGCCC 60.068 47.619 0.00 0.00 0.00 5.36
270 327 1.258982 GATCGTTGGATCACATGTCGC 59.741 52.381 0.00 0.00 46.81 5.19
334 1332 2.774439 AGTTGAACGATTTGTGCACC 57.226 45.000 15.69 0.00 35.17 5.01
464 2270 5.467738 AGTGATGGAACTGATGGTAGGATA 58.532 41.667 0.00 0.00 0.00 2.59
499 2305 2.028778 GAGCGAGCGAGCATGGAT 59.971 61.111 9.01 0.00 40.15 3.41
559 2367 8.351495 TGTTTCAGATTTATTTGTTTGCAGAC 57.649 30.769 0.00 0.00 0.00 3.51
563 2371 8.351495 TCACTGTTTCAGATTTATTTGTTTGC 57.649 30.769 3.70 0.00 35.18 3.68
630 2438 5.844516 TGTTTTCTTTCTAGGGAGAGGAGAA 59.155 40.000 0.00 0.00 35.54 2.87
640 2448 6.292919 CGTTGTCCTCTTGTTTTCTTTCTAGG 60.293 42.308 0.00 0.00 0.00 3.02
656 2464 2.223641 TGTGTGTACTGTCGTTGTCCTC 60.224 50.000 0.00 0.00 0.00 3.71
671 2479 2.006888 CGTTGTCCTCTTGTTGTGTGT 58.993 47.619 0.00 0.00 0.00 3.72
672 2480 2.030457 GTCGTTGTCCTCTTGTTGTGTG 59.970 50.000 0.00 0.00 0.00 3.82
673 2481 2.277084 GTCGTTGTCCTCTTGTTGTGT 58.723 47.619 0.00 0.00 0.00 3.72
674 2482 2.276201 TGTCGTTGTCCTCTTGTTGTG 58.724 47.619 0.00 0.00 0.00 3.33
675 2483 2.093658 ACTGTCGTTGTCCTCTTGTTGT 60.094 45.455 0.00 0.00 0.00 3.32
676 2484 2.550978 ACTGTCGTTGTCCTCTTGTTG 58.449 47.619 0.00 0.00 0.00 3.33
677 2485 2.981859 ACTGTCGTTGTCCTCTTGTT 57.018 45.000 0.00 0.00 0.00 2.83
678 2486 2.691526 TGTACTGTCGTTGTCCTCTTGT 59.308 45.455 0.00 0.00 0.00 3.16
679 2487 3.050619 GTGTACTGTCGTTGTCCTCTTG 58.949 50.000 0.00 0.00 0.00 3.02
680 2488 2.691526 TGTGTACTGTCGTTGTCCTCTT 59.308 45.455 0.00 0.00 0.00 2.85
681 2489 2.034305 GTGTGTACTGTCGTTGTCCTCT 59.966 50.000 0.00 0.00 0.00 3.69
682 2490 2.034305 AGTGTGTACTGTCGTTGTCCTC 59.966 50.000 0.00 0.00 35.34 3.71
683 2491 2.029623 AGTGTGTACTGTCGTTGTCCT 58.970 47.619 0.00 0.00 35.34 3.85
684 2492 2.223641 TGAGTGTGTACTGTCGTTGTCC 60.224 50.000 0.00 0.00 37.25 4.02
685 2493 2.787680 GTGAGTGTGTACTGTCGTTGTC 59.212 50.000 0.00 0.00 37.25 3.18
686 2494 2.480759 GGTGAGTGTGTACTGTCGTTGT 60.481 50.000 0.00 0.00 37.25 3.32
687 2495 2.124903 GGTGAGTGTGTACTGTCGTTG 58.875 52.381 0.00 0.00 37.25 4.10
688 2496 1.068127 GGGTGAGTGTGTACTGTCGTT 59.932 52.381 0.00 0.00 37.25 3.85
689 2497 0.672342 GGGTGAGTGTGTACTGTCGT 59.328 55.000 0.00 0.00 37.25 4.34
690 2498 0.038526 GGGGTGAGTGTGTACTGTCG 60.039 60.000 0.00 0.00 37.25 4.35
691 2499 1.272769 GAGGGGTGAGTGTGTACTGTC 59.727 57.143 0.00 0.00 37.25 3.51
692 2500 1.133136 AGAGGGGTGAGTGTGTACTGT 60.133 52.381 0.00 0.00 37.25 3.55
693 2501 1.546476 GAGAGGGGTGAGTGTGTACTG 59.454 57.143 0.00 0.00 37.25 2.74
694 2502 1.429687 AGAGAGGGGTGAGTGTGTACT 59.570 52.381 0.00 0.00 40.66 2.73
695 2503 1.819903 GAGAGAGGGGTGAGTGTGTAC 59.180 57.143 0.00 0.00 0.00 2.90
696 2504 1.711375 AGAGAGAGGGGTGAGTGTGTA 59.289 52.381 0.00 0.00 0.00 2.90
707 2515 2.806945 AGACAGTGAGAGAGAGAGGG 57.193 55.000 0.00 0.00 0.00 4.30
782 2594 4.785376 ACCTCTCTTTCTCTCTCTCTCTCT 59.215 45.833 0.00 0.00 0.00 3.10
783 2595 4.878397 CACCTCTCTTTCTCTCTCTCTCTC 59.122 50.000 0.00 0.00 0.00 3.20
784 2596 4.536090 TCACCTCTCTTTCTCTCTCTCTCT 59.464 45.833 0.00 0.00 0.00 3.10
821 2633 3.371166 CCCGGTCTTCTCTCTACTTCTCT 60.371 52.174 0.00 0.00 0.00 3.10
1047 3003 3.329889 TCCGGGAGCAAGTGCCAT 61.330 61.111 0.00 0.00 43.38 4.40
1386 3342 1.142748 CATCTCCAGGCACTCGTCC 59.857 63.158 0.00 0.00 34.60 4.79
1421 3377 1.674057 CGCAGGACCTGGAAGTTCT 59.326 57.895 23.09 0.00 31.21 3.01
1488 3444 1.073897 GCCTCACCTGCAACCTTCT 59.926 57.895 0.00 0.00 0.00 2.85
1540 3496 3.160269 CAAAGAAGCACCCAAATCTCCT 58.840 45.455 0.00 0.00 0.00 3.69
1572 3528 4.452455 ACCGAACAAAGCTCAAATCTGTAG 59.548 41.667 0.00 0.00 0.00 2.74
1574 3530 3.214328 ACCGAACAAAGCTCAAATCTGT 58.786 40.909 0.00 0.00 0.00 3.41
1622 3578 6.861065 TTTAGCTGAACCAAGAACTAGTTG 57.139 37.500 14.14 0.54 0.00 3.16
1682 3648 7.754069 CAACAAAATCAGTTGTTTAGCTCAA 57.246 32.000 0.00 0.00 46.97 3.02
1709 3675 1.067199 GAACTGCCAAATGAAGCGCG 61.067 55.000 0.00 0.00 0.00 6.86
1723 3689 6.506500 ACTTGCATCTATTCCAAAGAACTG 57.493 37.500 0.00 0.00 33.97 3.16
1725 3691 7.370383 TGAAACTTGCATCTATTCCAAAGAAC 58.630 34.615 0.00 0.00 33.97 3.01
1843 3809 3.601586 CGTTTGACTAGCACAAGAACACG 60.602 47.826 9.23 9.23 0.00 4.49
1903 3869 4.081420 TGGAGAACAGATGAAGGCTAGTTC 60.081 45.833 0.00 0.00 36.52 3.01
1945 3913 0.166597 ACGCTCACACAATGCAATCG 59.833 50.000 0.00 0.00 0.00 3.34
1963 3931 1.002251 GATCCGTCCACGAGAGATCAC 60.002 57.143 0.00 0.00 43.02 3.06
1976 3944 0.815615 GCCAATCCCACAGATCCGTC 60.816 60.000 0.00 0.00 32.47 4.79
2050 4018 6.881570 AGAAATAATTCCATCCTTTTGGCAG 58.118 36.000 0.00 0.00 36.45 4.85
2162 4130 6.573434 ACTGAAAAATGGAAAGGAGAACAAC 58.427 36.000 0.00 0.00 0.00 3.32
2215 4183 7.377696 AGAATCTAGAAGCTCAAATCAGGAT 57.622 36.000 0.00 0.00 0.00 3.24
2342 4310 2.061509 ATGCAGGCATTATGAGCACA 57.938 45.000 0.00 0.00 38.12 4.57
2375 4343 5.010617 GGAAGGGATCAAAGTTGCTTGTTTA 59.989 40.000 0.00 0.00 0.00 2.01
2464 4436 9.257428 TCCTTCAAGTTCCTTTTTAAAAGGTAA 57.743 29.630 28.90 20.52 38.55 2.85
2540 4516 4.483476 AAACAATCGAAACAGTACTGGC 57.517 40.909 26.12 13.93 34.19 4.85
2565 4541 6.578944 TCGCAGCTTAATACTTTCCTATCAA 58.421 36.000 0.00 0.00 0.00 2.57
2587 4563 2.403252 ACACCATTAGCCTTTCCTCG 57.597 50.000 0.00 0.00 0.00 4.63
2659 4638 5.368145 TGCACATTCAGTTACTTCAGAGTT 58.632 37.500 0.00 0.00 37.33 3.01
2660 4639 4.960938 TGCACATTCAGTTACTTCAGAGT 58.039 39.130 0.00 0.00 39.97 3.24
2661 4640 6.072838 ACAATGCACATTCAGTTACTTCAGAG 60.073 38.462 0.00 0.00 0.00 3.35
2662 4641 5.764686 ACAATGCACATTCAGTTACTTCAGA 59.235 36.000 0.00 0.00 0.00 3.27
2663 4642 6.005583 ACAATGCACATTCAGTTACTTCAG 57.994 37.500 0.00 0.00 0.00 3.02
2664 4643 6.389830 AACAATGCACATTCAGTTACTTCA 57.610 33.333 0.00 0.00 0.00 3.02
2697 4677 3.758554 GCACCTTTATATATGGCACTGGG 59.241 47.826 0.00 0.00 0.00 4.45
2701 4681 7.447374 TGTTATGCACCTTTATATATGGCAC 57.553 36.000 0.00 0.00 32.04 5.01
2712 4692 8.246180 CAGTCTAATGATTTGTTATGCACCTTT 58.754 33.333 0.00 0.00 0.00 3.11
2713 4693 7.611467 TCAGTCTAATGATTTGTTATGCACCTT 59.389 33.333 0.00 0.00 0.00 3.50
2822 4837 5.741982 AGTGAATGTAGCGTTTGTTTTTCAC 59.258 36.000 0.00 0.00 41.07 3.18
2861 4876 4.774124 CTGAATAGCAGGTCCAAGAATCA 58.226 43.478 0.00 0.00 41.07 2.57
2875 4890 3.604582 AGCTCAAGGACAACTGAATAGC 58.395 45.455 0.00 0.00 0.00 2.97
2904 4919 6.015350 AGTCAGAATTTTCTAGGACGAAGACA 60.015 38.462 0.00 0.00 36.13 3.41
2924 4939 4.653004 CACACTCACATCTACGTAGTCAG 58.347 47.826 21.53 14.49 43.93 3.51
2932 4947 0.716108 GCGTGCACACTCACATCTAC 59.284 55.000 18.64 0.00 36.80 2.59
2945 4960 2.816672 TCCAAATGATACAAAGCGTGCA 59.183 40.909 0.00 0.00 0.00 4.57
2950 4965 7.765360 TCATTTCCAATCCAAATGATACAAAGC 59.235 33.333 4.15 0.00 42.64 3.51
2967 4982 8.065473 ACATTGCATTACTATGTCATTTCCAA 57.935 30.769 0.00 0.00 40.11 3.53
2980 4995 7.744087 TTCTGACAAACTACATTGCATTACT 57.256 32.000 0.00 0.00 33.52 2.24
3005 5020 6.339587 TCAAAACAAGAACAAGGAAAGTGT 57.660 33.333 0.00 0.00 0.00 3.55
3100 5115 9.082313 CCCCAGCTTAGATTCAATTATGTTAAT 57.918 33.333 0.00 0.00 0.00 1.40
3156 5171 3.283751 CCAACTACTTCCAAACCACACA 58.716 45.455 0.00 0.00 0.00 3.72
3157 5172 2.621526 CCCAACTACTTCCAAACCACAC 59.378 50.000 0.00 0.00 0.00 3.82
3193 5212 5.693814 CGATAAATTGGATCTAAAGCTGGC 58.306 41.667 0.00 0.00 0.00 4.85
3200 5219 6.868864 GCTAGACTGCGATAAATTGGATCTAA 59.131 38.462 0.00 0.00 0.00 2.10
3215 5234 2.811431 AGTATGAGCTAGCTAGACTGCG 59.189 50.000 25.15 0.00 38.13 5.18
3220 5239 9.567776 GGATATGATTAGTATGAGCTAGCTAGA 57.432 37.037 25.15 7.90 0.00 2.43
3325 5349 0.529992 CGGCGGTCCAGGAACTTATC 60.530 60.000 2.07 0.00 34.60 1.75
3340 5364 0.317160 TCCATAACTATGAGGCGGCG 59.683 55.000 0.51 0.51 35.75 6.46
3348 5372 7.875041 CCCACATCTAAAGTCTCCATAACTATG 59.125 40.741 0.00 0.00 0.00 2.23
3352 5376 4.816925 GCCCACATCTAAAGTCTCCATAAC 59.183 45.833 0.00 0.00 0.00 1.89
3354 5378 4.101585 CAGCCCACATCTAAAGTCTCCATA 59.898 45.833 0.00 0.00 0.00 2.74
3368 5392 2.638480 ATGCGTATAACAGCCCACAT 57.362 45.000 0.00 0.00 0.00 3.21
3373 5397 4.342772 CTCACAAAATGCGTATAACAGCC 58.657 43.478 0.00 0.00 0.00 4.85
3443 5499 3.966154 AGCAAACCGATACAGATAGACG 58.034 45.455 0.00 0.00 0.00 4.18
3477 5533 3.190118 ACAGCAGCAACAAGAGAATTAGC 59.810 43.478 0.00 0.00 0.00 3.09
3478 5534 4.379186 CCACAGCAGCAACAAGAGAATTAG 60.379 45.833 0.00 0.00 0.00 1.73
3505 5564 9.553064 AAGCATACTAGATCAACAGATTTAAGG 57.447 33.333 0.00 0.00 0.00 2.69
3603 5662 5.862924 TTAGGAAAAATCTGTCTTCAGCG 57.137 39.130 0.00 0.00 41.10 5.18
3613 5672 7.177392 AGTGTAAAGCAGCATTAGGAAAAATCT 59.823 33.333 0.00 0.00 0.00 2.40
3621 5680 4.637534 ACATCAGTGTAAAGCAGCATTAGG 59.362 41.667 0.00 0.00 36.63 2.69
3628 5687 4.067896 ACAGGAACATCAGTGTAAAGCAG 58.932 43.478 0.00 0.00 37.67 4.24
3682 5749 1.411977 AGTCTCATGGAGATTGAGCCG 59.588 52.381 0.00 0.00 40.98 5.52
3716 5783 8.076178 AGTCAACATTTGCAGTAAATTAGTGTC 58.924 33.333 9.32 3.31 36.87 3.67
3744 5811 5.861251 TGTTTTGTGTGCTCAGTAAACTTTG 59.139 36.000 18.62 0.00 33.27 2.77
3752 5819 2.710377 TCAGTGTTTTGTGTGCTCAGT 58.290 42.857 0.00 0.00 0.00 3.41
3760 5827 7.672983 ACTCCAGTTATATCAGTGTTTTGTG 57.327 36.000 0.00 0.00 0.00 3.33
3761 5828 9.436957 CTTACTCCAGTTATATCAGTGTTTTGT 57.563 33.333 0.00 0.00 0.00 2.83
3762 5829 9.653287 TCTTACTCCAGTTATATCAGTGTTTTG 57.347 33.333 0.00 0.00 0.00 2.44
3767 5841 9.254133 CATGTTCTTACTCCAGTTATATCAGTG 57.746 37.037 0.00 0.00 0.00 3.66
3856 5930 6.358118 TGGCGTTACAAAGATCATGATAAC 57.642 37.500 8.54 7.39 0.00 1.89
3875 5949 3.211963 GGGCACTTGGCTATGGCG 61.212 66.667 2.47 0.00 44.01 5.69
3888 5962 1.073025 CTGCAGGTACACTTGGGCA 59.927 57.895 5.57 0.00 0.00 5.36
3889 5963 0.537371 AACTGCAGGTACACTTGGGC 60.537 55.000 19.93 0.00 0.00 5.36
3890 5964 2.851263 TAACTGCAGGTACACTTGGG 57.149 50.000 19.93 0.00 0.00 4.12
3891 5965 4.518970 ACAAATAACTGCAGGTACACTTGG 59.481 41.667 23.66 13.15 0.00 3.61
3892 5966 5.689383 ACAAATAACTGCAGGTACACTTG 57.311 39.130 15.13 18.69 0.00 3.16
3893 5967 7.996098 ATAACAAATAACTGCAGGTACACTT 57.004 32.000 15.13 5.20 0.00 3.16
3894 5968 7.996098 AATAACAAATAACTGCAGGTACACT 57.004 32.000 15.13 0.00 0.00 3.55
3895 5969 9.124807 GAAAATAACAAATAACTGCAGGTACAC 57.875 33.333 15.13 0.00 0.00 2.90
3936 6010 4.331968 TGCGAGTATTTGGTGGAAGAATT 58.668 39.130 0.00 0.00 0.00 2.17
3956 6030 4.036734 TCACTTGAGAAACAAAGTCCATGC 59.963 41.667 0.00 0.00 38.08 4.06
3957 6031 5.756195 TCACTTGAGAAACAAAGTCCATG 57.244 39.130 0.00 0.00 38.08 3.66
3982 6056 6.204882 GCCCATTAGTCCATTATCAACACTAC 59.795 42.308 0.00 0.00 0.00 2.73
3991 6065 5.653255 AGAGTTGCCCATTAGTCCATTAT 57.347 39.130 0.00 0.00 0.00 1.28
4032 6106 5.271598 AGGCCATGAACCATATCTGAAAAA 58.728 37.500 5.01 0.00 0.00 1.94
4051 6125 6.596621 AGAAATTAGAACTCAAGGATAGGCC 58.403 40.000 0.00 0.00 0.00 5.19
4062 6136 8.608317 GCATGGAGTAGAAAGAAATTAGAACTC 58.392 37.037 0.00 0.00 33.10 3.01
4166 6242 6.842676 AGTTTCCAGACAAGTAAAGGATTCT 58.157 36.000 0.00 0.00 0.00 2.40
4180 6256 6.433766 CATGAAAAGTTCAGAGTTTCCAGAC 58.566 40.000 0.00 0.00 43.98 3.51
4227 6303 1.202582 CACTAGCCGCTCAAGTACAGT 59.797 52.381 0.00 0.00 0.00 3.55
4361 6437 4.586421 AGATCTGAATGATACTCAGCGGAA 59.414 41.667 0.00 0.00 40.18 4.30
4364 6440 5.375417 AGAGATCTGAATGATACTCAGCG 57.625 43.478 0.00 0.00 40.18 5.18
4397 6473 1.462731 AACCTGCAAATGCCGCTTCA 61.463 50.000 2.46 0.00 41.18 3.02
4457 6533 1.216064 ATGCTGGCAGGTAATCTGGA 58.784 50.000 17.64 0.00 43.54 3.86
4499 6575 8.973378 GTAGCATAACTCAGATTAAGTGATGTC 58.027 37.037 3.26 0.00 37.74 3.06
4508 6584 5.067283 TCGCACAGTAGCATAACTCAGATTA 59.933 40.000 0.00 0.00 0.00 1.75
4625 6701 7.834181 AGTGTATATTTGCAAAATAGAGTGGGT 59.166 33.333 17.19 0.00 0.00 4.51
4663 6739 6.363882 TCAGGTATTCATGGCAATATTCACA 58.636 36.000 0.00 0.00 0.00 3.58
4682 6758 7.453393 TGTTCAAAGAGAGACATTAATCAGGT 58.547 34.615 0.00 0.00 0.00 4.00
4689 6765 9.809096 CTAGCTTATGTTCAAAGAGAGACATTA 57.191 33.333 0.00 0.00 33.28 1.90
4691 6767 7.124901 TCCTAGCTTATGTTCAAAGAGAGACAT 59.875 37.037 0.00 0.00 34.56 3.06
4692 6768 6.437477 TCCTAGCTTATGTTCAAAGAGAGACA 59.563 38.462 0.00 0.00 0.00 3.41
4693 6769 6.868622 TCCTAGCTTATGTTCAAAGAGAGAC 58.131 40.000 0.00 0.00 0.00 3.36
4694 6770 7.563188 AGATCCTAGCTTATGTTCAAAGAGAGA 59.437 37.037 0.00 0.00 0.00 3.10
4695 6771 7.725251 AGATCCTAGCTTATGTTCAAAGAGAG 58.275 38.462 0.00 0.00 0.00 3.20
4698 6774 6.461648 CGGAGATCCTAGCTTATGTTCAAAGA 60.462 42.308 0.00 0.00 0.00 2.52
4706 6782 5.655488 CCAATACGGAGATCCTAGCTTATG 58.345 45.833 0.00 0.00 36.56 1.90
4707 6783 4.160626 GCCAATACGGAGATCCTAGCTTAT 59.839 45.833 0.00 0.00 36.56 1.73
4733 6809 7.277760 GCAGAAAACCATAGTTGTTTCTGTTTT 59.722 33.333 20.19 0.00 44.97 2.43
4767 6843 7.986085 AATATCTTGTAGTGCTTGACAAACT 57.014 32.000 0.00 0.00 35.24 2.66
4768 6844 9.543018 GTAAATATCTTGTAGTGCTTGACAAAC 57.457 33.333 0.00 0.00 35.24 2.93
4769 6845 9.502091 AGTAAATATCTTGTAGTGCTTGACAAA 57.498 29.630 0.00 0.00 35.24 2.83
4772 6848 7.905493 GCAAGTAAATATCTTGTAGTGCTTGAC 59.095 37.037 0.00 0.00 42.67 3.18
4774 6850 7.189512 GGCAAGTAAATATCTTGTAGTGCTTG 58.810 38.462 7.35 0.00 42.67 4.01
4775 6851 6.318900 GGGCAAGTAAATATCTTGTAGTGCTT 59.681 38.462 7.35 0.00 42.67 3.91
4776 6852 5.823045 GGGCAAGTAAATATCTTGTAGTGCT 59.177 40.000 7.35 0.00 42.67 4.40
4777 6853 5.008712 GGGGCAAGTAAATATCTTGTAGTGC 59.991 44.000 7.35 0.00 42.67 4.40
4882 6962 6.468000 CACCTGAAAAACACGTCTTAAACTTC 59.532 38.462 0.00 0.00 0.00 3.01
4892 6972 2.616842 GTCCATCACCTGAAAAACACGT 59.383 45.455 0.00 0.00 0.00 4.49
4893 6973 2.031157 GGTCCATCACCTGAAAAACACG 60.031 50.000 0.00 0.00 42.84 4.49
4919 6999 1.273267 ACAGCTAGACCATGGTCCTCA 60.273 52.381 36.09 22.48 45.59 3.86
4940 7020 1.767654 TACTGCAAGAGCCTGCCACA 61.768 55.000 0.00 0.00 41.90 4.17
5193 7273 2.008329 GAAGCCAGCATCAAGAGACTG 58.992 52.381 0.00 0.00 0.00 3.51
5606 7686 4.438336 CGGTACACATACAATGTCTCGACT 60.438 45.833 0.00 0.00 42.70 4.18
5651 7731 1.964933 TGGACGTAATCTGGTGTGTCA 59.035 47.619 0.00 0.00 0.00 3.58
5793 7873 3.617263 GCCGAGTTGAGATTTTACGACAT 59.383 43.478 0.00 0.00 0.00 3.06
5808 7888 1.899814 TCATCCTACACTTGCCGAGTT 59.100 47.619 0.00 0.00 36.10 3.01
6049 8131 6.430925 CCAGAACAACACATAATCTGAAAGGA 59.569 38.462 2.82 0.00 39.85 3.36
6079 8161 9.488762 TTCTTATATTTTGAGACAGAGGGAGTA 57.511 33.333 0.00 0.00 0.00 2.59
6080 8162 7.979786 TCTTATATTTTGAGACAGAGGGAGT 57.020 36.000 0.00 0.00 0.00 3.85
6081 8163 7.436673 CGTTCTTATATTTTGAGACAGAGGGAG 59.563 40.741 0.00 0.00 0.00 4.30
6082 8164 7.093465 ACGTTCTTATATTTTGAGACAGAGGGA 60.093 37.037 0.00 0.00 0.00 4.20
6083 8165 7.042335 ACGTTCTTATATTTTGAGACAGAGGG 58.958 38.462 0.00 0.00 0.00 4.30
6084 8166 8.480643 AACGTTCTTATATTTTGAGACAGAGG 57.519 34.615 0.00 0.00 0.00 3.69
6101 8183 9.925268 CATTAGTGTAGTGTTTAAAACGTTCTT 57.075 29.630 0.00 1.04 0.00 2.52
6102 8184 9.101655 ACATTAGTGTAGTGTTTAAAACGTTCT 57.898 29.630 0.00 0.00 36.63 3.01
6103 8185 9.361712 GACATTAGTGTAGTGTTTAAAACGTTC 57.638 33.333 0.00 0.00 39.09 3.95
6104 8186 8.881743 TGACATTAGTGTAGTGTTTAAAACGTT 58.118 29.630 0.00 0.00 39.09 3.99
6105 8187 8.422973 TGACATTAGTGTAGTGTTTAAAACGT 57.577 30.769 0.00 0.00 39.09 3.99
6106 8188 9.705471 TTTGACATTAGTGTAGTGTTTAAAACG 57.295 29.630 0.00 0.00 39.09 3.60
6110 8192 9.705471 CGTTTTTGACATTAGTGTAGTGTTTAA 57.295 29.630 0.00 0.00 39.09 1.52
6111 8193 8.881743 ACGTTTTTGACATTAGTGTAGTGTTTA 58.118 29.630 0.00 0.00 39.09 2.01
6112 8194 7.754625 ACGTTTTTGACATTAGTGTAGTGTTT 58.245 30.769 0.00 0.00 39.09 2.83
6113 8195 7.311364 ACGTTTTTGACATTAGTGTAGTGTT 57.689 32.000 0.00 0.00 39.09 3.32
6114 8196 6.913873 ACGTTTTTGACATTAGTGTAGTGT 57.086 33.333 0.00 0.00 39.09 3.55
6115 8197 7.627340 AGAACGTTTTTGACATTAGTGTAGTG 58.373 34.615 0.46 0.00 39.09 2.74
6116 8198 7.781548 AGAACGTTTTTGACATTAGTGTAGT 57.218 32.000 0.46 0.00 39.09 2.73
6126 8208 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
6127 8209 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
6128 8210 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
6129 8211 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
6130 8212 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
6131 8213 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
6132 8214 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
6133 8215 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
6134 8216 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
6135 8217 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
6136 8218 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
6137 8219 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
6138 8220 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6139 8221 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6140 8222 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6141 8223 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6142 8224 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6143 8225 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
6144 8226 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
6145 8227 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
6146 8228 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
6147 8229 2.191981 ATTTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
6148 8230 2.852714 TATTTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
6149 8231 4.701651 AATTATTTACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
6150 8232 6.171213 CCATAATTATTTACTCCCTCCGTCC 58.829 44.000 0.00 0.00 0.00 4.79
6151 8233 6.766429 ACCATAATTATTTACTCCCTCCGTC 58.234 40.000 0.00 0.00 0.00 4.79
6152 8234 6.328148 TGACCATAATTATTTACTCCCTCCGT 59.672 38.462 0.00 0.00 0.00 4.69
6153 8235 6.765403 TGACCATAATTATTTACTCCCTCCG 58.235 40.000 0.00 0.00 0.00 4.63
6154 8236 8.606830 AGATGACCATAATTATTTACTCCCTCC 58.393 37.037 0.00 0.00 0.00 4.30
6155 8237 9.442047 CAGATGACCATAATTATTTACTCCCTC 57.558 37.037 0.00 0.00 0.00 4.30
6156 8238 8.386264 CCAGATGACCATAATTATTTACTCCCT 58.614 37.037 0.00 0.00 0.00 4.20
6157 8239 8.164070 ACCAGATGACCATAATTATTTACTCCC 58.836 37.037 0.00 0.00 0.00 4.30
6158 8240 9.003658 CACCAGATGACCATAATTATTTACTCC 57.996 37.037 0.00 0.00 0.00 3.85
6159 8241 9.561069 ACACCAGATGACCATAATTATTTACTC 57.439 33.333 0.00 0.00 0.00 2.59
6160 8242 9.920946 AACACCAGATGACCATAATTATTTACT 57.079 29.630 0.00 0.00 0.00 2.24
6236 8318 1.307355 TGTGCTTCCATGCATGACCG 61.307 55.000 28.31 15.17 45.23 4.79
6256 8338 2.766345 TTGCAATCAAGGGGCAAATC 57.234 45.000 0.00 0.00 43.82 2.17
6263 8345 2.089980 CTCAGAGGTTGCAATCAAGGG 58.910 52.381 13.22 0.00 31.93 3.95
6277 8359 1.755959 ACTATCAGCCAGCACTCAGAG 59.244 52.381 0.00 0.00 0.00 3.35
6315 8397 7.270832 AGTCCTCTGACATATAGCTCTATCT 57.729 40.000 0.00 0.00 44.33 1.98
6325 8407 9.965902 AATCAAAAGTTAAGTCCTCTGACATAT 57.034 29.630 0.00 0.00 44.33 1.78
6373 8455 2.730550 GGTCAAACCCAGCTCATTTG 57.269 50.000 7.30 7.30 35.15 2.32
6456 8538 1.939255 CGAACGGAGGGAGTACTAGAC 59.061 57.143 0.00 0.00 0.00 2.59
6461 8649 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
6462 8650 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
6463 8651 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
6464 8652 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6465 8653 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
6466 8654 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
6467 8655 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
6468 8656 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
6469 8657 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
6470 8658 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
6471 8659 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
6472 8660 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
6473 8661 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
6474 8662 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
6475 8663 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
6476 8664 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
6518 8706 9.691362 GTCACAAAAATGGATGTATTTACAACT 57.309 29.630 0.00 0.00 39.99 3.16
6519 8707 9.469807 TGTCACAAAAATGGATGTATTTACAAC 57.530 29.630 0.00 0.00 39.99 3.32
6521 8709 9.689976 CTTGTCACAAAAATGGATGTATTTACA 57.310 29.630 0.00 0.00 40.98 2.41
6522 8710 9.691362 ACTTGTCACAAAAATGGATGTATTTAC 57.309 29.630 0.00 0.00 30.47 2.01
6527 8715 9.906660 GAATTACTTGTCACAAAAATGGATGTA 57.093 29.630 0.00 0.00 0.00 2.29
6528 8716 8.641541 AGAATTACTTGTCACAAAAATGGATGT 58.358 29.630 0.00 0.00 0.00 3.06
6529 8717 8.918658 CAGAATTACTTGTCACAAAAATGGATG 58.081 33.333 0.00 0.00 0.00 3.51
6530 8718 8.859090 TCAGAATTACTTGTCACAAAAATGGAT 58.141 29.630 0.00 0.00 0.00 3.41
6531 8719 8.231692 TCAGAATTACTTGTCACAAAAATGGA 57.768 30.769 0.00 0.00 0.00 3.41
6532 8720 8.755018 GTTCAGAATTACTTGTCACAAAAATGG 58.245 33.333 0.00 0.00 0.00 3.16
6533 8721 8.471457 CGTTCAGAATTACTTGTCACAAAAATG 58.529 33.333 0.00 0.00 0.00 2.32
6534 8722 7.647715 CCGTTCAGAATTACTTGTCACAAAAAT 59.352 33.333 0.00 0.00 0.00 1.82
6535 8723 6.970043 CCGTTCAGAATTACTTGTCACAAAAA 59.030 34.615 0.00 0.00 0.00 1.94
6536 8724 6.316640 TCCGTTCAGAATTACTTGTCACAAAA 59.683 34.615 0.00 0.00 0.00 2.44
6537 8725 5.818336 TCCGTTCAGAATTACTTGTCACAAA 59.182 36.000 0.00 0.00 0.00 2.83
6538 8726 5.361427 TCCGTTCAGAATTACTTGTCACAA 58.639 37.500 0.00 0.00 0.00 3.33
6539 8727 4.951254 TCCGTTCAGAATTACTTGTCACA 58.049 39.130 0.00 0.00 0.00 3.58
6540 8728 4.389077 CCTCCGTTCAGAATTACTTGTCAC 59.611 45.833 0.00 0.00 0.00 3.67
6541 8729 4.562757 CCCTCCGTTCAGAATTACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
6542 8730 3.933332 CCCTCCGTTCAGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
6543 8731 3.581332 TCCCTCCGTTCAGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
6544 8732 4.184629 CTCCCTCCGTTCAGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
6545 8733 3.838903 ACTCCCTCCGTTCAGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
6546 8734 3.442076 ACTCCCTCCGTTCAGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
6547 8735 3.889520 ACTCCCTCCGTTCAGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
6548 8736 4.607239 ACTACTCCCTCCGTTCAGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
6549 8737 3.442076 ACTACTCCCTCCGTTCAGAATT 58.558 45.455 0.00 0.00 0.00 2.17
6550 8738 3.103080 ACTACTCCCTCCGTTCAGAAT 57.897 47.619 0.00 0.00 0.00 2.40
6551 8739 2.599408 ACTACTCCCTCCGTTCAGAA 57.401 50.000 0.00 0.00 0.00 3.02
6552 8740 2.561419 CAAACTACTCCCTCCGTTCAGA 59.439 50.000 0.00 0.00 0.00 3.27
6553 8741 2.299297 ACAAACTACTCCCTCCGTTCAG 59.701 50.000 0.00 0.00 0.00 3.02
6554 8742 2.322658 ACAAACTACTCCCTCCGTTCA 58.677 47.619 0.00 0.00 0.00 3.18
6555 8743 4.219288 TCTTACAAACTACTCCCTCCGTTC 59.781 45.833 0.00 0.00 0.00 3.95
6556 8744 4.154942 TCTTACAAACTACTCCCTCCGTT 58.845 43.478 0.00 0.00 0.00 4.44
6557 8745 3.762823 CTCTTACAAACTACTCCCTCCGT 59.237 47.826 0.00 0.00 0.00 4.69
6558 8746 4.015084 TCTCTTACAAACTACTCCCTCCG 58.985 47.826 0.00 0.00 0.00 4.63
6559 8747 5.997384 TTCTCTTACAAACTACTCCCTCC 57.003 43.478 0.00 0.00 0.00 4.30
6560 8748 6.756221 TGTTTCTCTTACAAACTACTCCCTC 58.244 40.000 0.00 0.00 35.19 4.30
6561 8749 6.742559 TGTTTCTCTTACAAACTACTCCCT 57.257 37.500 0.00 0.00 35.19 4.20
6562 8750 7.387643 AGATGTTTCTCTTACAAACTACTCCC 58.612 38.462 0.00 0.00 35.19 4.30
6563 8751 9.356433 GTAGATGTTTCTCTTACAAACTACTCC 57.644 37.037 0.00 0.00 37.00 3.85
6564 8752 9.909644 TGTAGATGTTTCTCTTACAAACTACTC 57.090 33.333 16.48 0.00 38.59 2.59
6565 8753 9.915629 CTGTAGATGTTTCTCTTACAAACTACT 57.084 33.333 16.48 0.00 38.59 2.57
6598 8786 2.639065 TCGCAATCAATCCCAGGTAAC 58.361 47.619 0.00 0.00 0.00 2.50
6603 8791 2.287427 GCTCAATCGCAATCAATCCCAG 60.287 50.000 0.00 0.00 0.00 4.45
6606 8794 1.599071 TCGCTCAATCGCAATCAATCC 59.401 47.619 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.