Multiple sequence alignment - TraesCS1B01G118700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G118700 chr1B 100.000 3249 0 0 1 3249 139480427 139477179 0.000000e+00 6000.0
1 TraesCS1B01G118700 chr1B 97.137 524 15 0 2464 2987 139372971 139372448 0.000000e+00 885.0
2 TraesCS1B01G118700 chr1B 97.196 107 2 1 3144 3249 175196746 175196640 2.580000e-41 180.0
3 TraesCS1B01G118700 chr1D 90.141 1065 72 13 1345 2400 86750429 86749389 0.000000e+00 1354.0
4 TraesCS1B01G118700 chr1D 89.926 814 45 19 25 808 86782421 86781615 0.000000e+00 1014.0
5 TraesCS1B01G118700 chr1D 91.868 455 29 5 898 1348 86781433 86780983 2.130000e-176 628.0
6 TraesCS1B01G118700 chr1D 91.216 148 13 0 3005 3152 338976506 338976359 5.500000e-48 202.0
7 TraesCS1B01G118700 chr1A 88.857 691 70 7 1089 1777 82125686 82125001 0.000000e+00 843.0
8 TraesCS1B01G118700 chr1A 84.043 94 13 2 2043 2136 82123923 82123832 4.460000e-14 89.8
9 TraesCS1B01G118700 chr5B 91.007 278 19 5 94 368 699384980 699385254 1.420000e-98 370.0
10 TraesCS1B01G118700 chr5B 89.286 168 15 2 898 1062 699385726 699385893 1.180000e-49 207.0
11 TraesCS1B01G118700 chr5B 97.170 106 3 0 3144 3249 208941817 208941712 2.580000e-41 180.0
12 TraesCS1B01G118700 chr5B 91.870 123 9 1 1089 1211 699385965 699386086 1.550000e-38 171.0
13 TraesCS1B01G118700 chr5A 92.763 152 11 0 2995 3146 114422995 114423146 1.520000e-53 220.0
14 TraesCS1B01G118700 chr5A 86.364 66 5 4 744 806 459094027 459094091 5.820000e-08 69.4
15 TraesCS1B01G118700 chr4A 92.105 152 12 0 2995 3146 376070561 376070712 7.060000e-52 215.0
16 TraesCS1B01G118700 chr4A 97.170 106 3 0 3144 3249 447320658 447320553 2.580000e-41 180.0
17 TraesCS1B01G118700 chr6A 97.170 106 3 0 3144 3249 556646731 556646626 2.580000e-41 180.0
18 TraesCS1B01G118700 chr4B 97.170 106 3 0 3144 3249 383588987 383588882 2.580000e-41 180.0
19 TraesCS1B01G118700 chr4B 85.526 152 17 5 1 150 658580450 658580598 1.560000e-33 154.0
20 TraesCS1B01G118700 chr3B 96.262 107 4 0 3143 3249 812605720 812605614 3.330000e-40 176.0
21 TraesCS1B01G118700 chr3A 97.115 104 3 0 3146 3249 722649033 722649136 3.330000e-40 176.0
22 TraesCS1B01G118700 chr3A 97.115 104 3 0 3146 3249 722689268 722689371 3.330000e-40 176.0
23 TraesCS1B01G118700 chr3A 97.115 104 3 0 3146 3249 722729641 722729744 3.330000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G118700 chr1B 139477179 139480427 3248 True 6000.000000 6000 100.000 1 3249 1 chr1B.!!$R2 3248
1 TraesCS1B01G118700 chr1B 139372448 139372971 523 True 885.000000 885 97.137 2464 2987 1 chr1B.!!$R1 523
2 TraesCS1B01G118700 chr1D 86749389 86750429 1040 True 1354.000000 1354 90.141 1345 2400 1 chr1D.!!$R1 1055
3 TraesCS1B01G118700 chr1D 86780983 86782421 1438 True 821.000000 1014 90.897 25 1348 2 chr1D.!!$R3 1323
4 TraesCS1B01G118700 chr1A 82123832 82125686 1854 True 466.400000 843 86.450 1089 2136 2 chr1A.!!$R1 1047
5 TraesCS1B01G118700 chr5B 699384980 699386086 1106 False 249.333333 370 90.721 94 1211 3 chr5B.!!$F1 1117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.104671 CCTTTTGCTGGGTGTTGTGG 59.895 55.0 0.00 0.0 0.00 4.17 F
278 279 0.173481 CTGAAGTTCGCGGATCTGGA 59.827 55.0 6.13 0.0 0.00 3.86 F
285 288 0.174845 TCGCGGATCTGGAAAACGAT 59.825 50.0 6.13 0.0 0.00 3.73 F
1540 1785 0.253044 CATGGCCTCGGAGAAGGAAA 59.747 55.0 6.58 0.0 34.09 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1720 2001 0.034616 CATCCCGGCCTCTGATCTTC 59.965 60.0 0.0 0.0 0.00 2.87 R
1863 2637 0.036105 CAGCACCAGTCATGCCTACA 60.036 55.0 0.0 0.0 44.53 2.74 R
1864 2638 0.745845 CCAGCACCAGTCATGCCTAC 60.746 60.0 0.0 0.0 44.53 3.18 R
2458 3589 0.035458 CTTGGTGCCTCTTCGGAGTT 59.965 55.0 0.0 0.0 40.29 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.104671 CCTTTTGCTGGGTGTTGTGG 59.895 55.000 0.00 0.00 0.00 4.17
48 49 4.222145 TGTGGAAAACTCGTAATAGAGCCT 59.778 41.667 0.00 0.00 41.77 4.58
49 50 4.567159 GTGGAAAACTCGTAATAGAGCCTG 59.433 45.833 0.00 0.00 41.77 4.85
50 51 3.556365 GGAAAACTCGTAATAGAGCCTGC 59.444 47.826 0.00 0.00 41.77 4.85
51 52 4.434520 GAAAACTCGTAATAGAGCCTGCT 58.565 43.478 0.00 0.00 41.77 4.24
60 61 7.217200 TCGTAATAGAGCCTGCTTTTGATAAT 58.783 34.615 0.00 0.00 0.00 1.28
61 62 8.364894 TCGTAATAGAGCCTGCTTTTGATAATA 58.635 33.333 0.00 0.00 0.00 0.98
92 93 1.606531 AGCCCCTGTTGAGCTGATC 59.393 57.895 0.00 0.00 34.99 2.92
102 103 3.686241 TGTTGAGCTGATCTGTTACATGC 59.314 43.478 0.00 0.00 0.00 4.06
104 105 2.166254 TGAGCTGATCTGTTACATGCGA 59.834 45.455 0.00 0.00 0.00 5.10
216 217 1.153686 GCTCATGAGACTGCGCAGA 60.154 57.895 42.03 21.72 0.00 4.26
278 279 0.173481 CTGAAGTTCGCGGATCTGGA 59.827 55.000 6.13 0.00 0.00 3.86
279 280 0.606096 TGAAGTTCGCGGATCTGGAA 59.394 50.000 6.13 2.70 0.00 3.53
285 288 0.174845 TCGCGGATCTGGAAAACGAT 59.825 50.000 6.13 0.00 0.00 3.73
304 307 1.637338 TGAGATGCTGGAGTGACTGT 58.363 50.000 0.00 0.00 0.00 3.55
309 312 0.541392 TGCTGGAGTGACTGTGTTGT 59.459 50.000 0.00 0.00 0.00 3.32
388 396 1.338674 CGTTGGGCTGTGGTTATCTCA 60.339 52.381 0.00 0.00 0.00 3.27
402 424 2.334006 ATCTCACCTGGAGTCTTGGT 57.666 50.000 0.00 2.48 44.40 3.67
460 546 4.765339 GCCTTTATGTTCTGTTACAACCCT 59.235 41.667 0.00 0.00 0.00 4.34
468 554 2.571653 TCTGTTACAACCCTGCTAGCAT 59.428 45.455 19.72 4.49 0.00 3.79
515 607 4.166539 AGAGCTGAATACCTAGATGCCAT 58.833 43.478 0.00 0.00 0.00 4.40
556 648 6.265196 TGTGCAGGTTATGATTGAAAGTCTTT 59.735 34.615 0.00 0.00 0.00 2.52
583 675 8.519526 TGTTTCTTTTTCTGATAGTGTTGTTGT 58.480 29.630 0.00 0.00 0.00 3.32
628 720 4.077300 TGTGCATTCTCAGAGAACACTT 57.923 40.909 24.16 6.78 37.00 3.16
629 721 3.811497 TGTGCATTCTCAGAGAACACTTG 59.189 43.478 24.16 16.68 37.00 3.16
638 730 3.387699 TCAGAGAACACTTGTCACCATCA 59.612 43.478 0.00 0.00 0.00 3.07
651 743 4.080413 TGTCACCATCAATCTGCCTTCATA 60.080 41.667 0.00 0.00 0.00 2.15
702 796 6.209391 CACTTTGAATCCCTTGATAAACTGGT 59.791 38.462 0.00 0.00 0.00 4.00
709 803 4.469945 TCCCTTGATAAACTGGTGAGTAGG 59.530 45.833 0.00 0.00 0.00 3.18
713 807 5.499004 TGATAAACTGGTGAGTAGGCTTT 57.501 39.130 0.00 0.00 0.00 3.51
714 808 5.876357 TGATAAACTGGTGAGTAGGCTTTT 58.124 37.500 0.00 0.00 0.00 2.27
726 820 4.145052 AGTAGGCTTTTAACTTGCTGCTT 58.855 39.130 0.00 0.00 0.00 3.91
732 826 5.119125 GGCTTTTAACTTGCTGCTTTATGTG 59.881 40.000 0.00 0.00 0.00 3.21
734 828 6.420604 GCTTTTAACTTGCTGCTTTATGTGAA 59.579 34.615 0.00 0.00 0.00 3.18
736 830 8.885494 TTTTAACTTGCTGCTTTATGTGAAAT 57.115 26.923 0.00 0.00 0.00 2.17
795 890 9.691362 GCCATATTTTTACTGAAGTCAGAAAAA 57.309 29.630 15.15 18.82 46.59 1.94
818 934 3.249799 TGTACAAGAAGCACGTTTGATGG 59.750 43.478 4.02 0.00 0.00 3.51
820 936 1.267806 CAAGAAGCACGTTTGATGGCT 59.732 47.619 0.00 0.00 38.45 4.75
821 937 2.472695 AGAAGCACGTTTGATGGCTA 57.527 45.000 0.00 0.00 35.11 3.93
822 938 2.991250 AGAAGCACGTTTGATGGCTAT 58.009 42.857 0.00 0.00 35.11 2.97
823 939 3.347216 AGAAGCACGTTTGATGGCTATT 58.653 40.909 0.00 0.00 35.11 1.73
824 940 3.375299 AGAAGCACGTTTGATGGCTATTC 59.625 43.478 0.00 0.00 35.11 1.75
826 942 1.065551 GCACGTTTGATGGCTATTCCC 59.934 52.381 0.00 0.00 0.00 3.97
827 943 2.643551 CACGTTTGATGGCTATTCCCT 58.356 47.619 0.00 0.00 0.00 4.20
829 945 2.238646 ACGTTTGATGGCTATTCCCTGA 59.761 45.455 0.00 0.00 0.00 3.86
832 948 2.196742 TGATGGCTATTCCCTGACCT 57.803 50.000 0.00 0.00 0.00 3.85
833 949 3.344535 TGATGGCTATTCCCTGACCTA 57.655 47.619 0.00 0.00 0.00 3.08
834 950 2.972713 TGATGGCTATTCCCTGACCTAC 59.027 50.000 0.00 0.00 0.00 3.18
835 951 2.561209 TGGCTATTCCCTGACCTACA 57.439 50.000 0.00 0.00 0.00 2.74
837 953 1.068741 GGCTATTCCCTGACCTACACG 59.931 57.143 0.00 0.00 0.00 4.49
838 954 1.068741 GCTATTCCCTGACCTACACGG 59.931 57.143 0.00 0.00 39.35 4.94
839 955 1.687123 CTATTCCCTGACCTACACGGG 59.313 57.143 0.00 0.00 37.89 5.28
842 958 4.123571 CCTGACCTACACGGGGAA 57.876 61.111 0.00 0.00 36.97 3.97
846 962 1.687123 CTGACCTACACGGGGAATAGG 59.313 57.143 0.00 0.00 41.21 2.57
847 963 1.288633 TGACCTACACGGGGAATAGGA 59.711 52.381 6.83 0.00 38.20 2.94
848 964 2.090943 TGACCTACACGGGGAATAGGAT 60.091 50.000 6.83 0.00 38.20 3.24
849 965 2.561858 GACCTACACGGGGAATAGGATC 59.438 54.545 6.83 0.00 38.20 3.36
850 966 1.900486 CCTACACGGGGAATAGGATCC 59.100 57.143 2.48 2.48 38.20 3.36
853 969 2.214920 ACGGGGAATAGGATCCGCC 61.215 63.158 5.98 6.77 46.69 6.13
854 970 2.214216 CGGGGAATAGGATCCGCCA 61.214 63.158 5.98 0.00 46.69 5.69
859 991 1.834263 GGAATAGGATCCGCCATAGCT 59.166 52.381 5.98 0.00 40.02 3.32
878 1010 2.704572 CTGAAAGTAGGGAGCAACTGG 58.295 52.381 0.00 0.00 0.00 4.00
884 1016 3.517612 AGTAGGGAGCAACTGGTTAAGA 58.482 45.455 0.00 0.00 0.00 2.10
896 1028 3.746492 ACTGGTTAAGAGCGTTTGTCATC 59.254 43.478 0.00 0.00 0.00 2.92
956 1151 0.679960 GGATTTGCAAGGTAGGCCGT 60.680 55.000 0.00 0.00 40.50 5.68
957 1152 0.451783 GATTTGCAAGGTAGGCCGTG 59.548 55.000 0.00 0.00 45.27 4.94
958 1153 0.965363 ATTTGCAAGGTAGGCCGTGG 60.965 55.000 0.00 0.00 43.18 4.94
959 1154 2.346284 TTTGCAAGGTAGGCCGTGGT 62.346 55.000 0.00 0.00 43.18 4.16
975 1171 4.312443 CCGTGGTGTGTATATATGTTCCC 58.688 47.826 0.00 0.00 0.00 3.97
1064 1262 6.954684 AGGAAGACAATCACCGTATAGGATAT 59.045 38.462 0.00 0.00 45.00 1.63
1065 1263 8.114102 AGGAAGACAATCACCGTATAGGATATA 58.886 37.037 0.00 0.00 45.00 0.86
1095 1338 5.637810 CGTACAAGCTTAGGACAATCAAGAA 59.362 40.000 0.00 0.00 0.00 2.52
1290 1535 2.493973 GACGAGCAGGAGAGGCTG 59.506 66.667 0.00 0.00 42.78 4.85
1447 1692 0.749649 GATCAGGACGATGGACTGCT 59.250 55.000 0.00 0.00 33.17 4.24
1488 1733 1.285578 GCATCTTCGACTGGCTTCTC 58.714 55.000 0.00 0.00 0.00 2.87
1540 1785 0.253044 CATGGCCTCGGAGAAGGAAA 59.747 55.000 6.58 0.00 34.09 3.13
1569 1814 5.242615 CCTGGAAGAGGAAAAGAAAGAAAGG 59.757 44.000 0.00 0.00 46.33 3.11
1576 1821 4.769488 AGGAAAAGAAAGAAAGGCTCCATC 59.231 41.667 0.00 0.00 0.00 3.51
1642 1893 4.585526 CTGCCGCGGCCGAAGATA 62.586 66.667 44.42 24.94 41.09 1.98
1650 1901 2.716398 GCGGCCGAAGATACATTTTTC 58.284 47.619 33.48 0.62 0.00 2.29
1712 1993 0.324368 TCCGGGTCAGCAGTCAGTAT 60.324 55.000 0.00 0.00 0.00 2.12
1767 2049 1.241165 GGTTTACGGGAAGTGGTTGG 58.759 55.000 0.00 0.00 0.00 3.77
1793 2567 5.947228 TTTTAGTCTTTCCAGAGCACATG 57.053 39.130 0.00 0.00 0.00 3.21
1794 2568 1.818642 AGTCTTTCCAGAGCACATGC 58.181 50.000 0.00 0.00 42.49 4.06
1818 2592 9.256228 TGCTATAGGGGAAAATAGAGTATAGTG 57.744 37.037 1.04 0.00 0.00 2.74
1819 2593 8.198778 GCTATAGGGGAAAATAGAGTATAGTGC 58.801 40.741 1.04 0.00 0.00 4.40
1830 2604 4.474394 AGAGTATAGTGCACTGCTGGATA 58.526 43.478 29.57 15.26 0.00 2.59
1836 2610 2.009774 GTGCACTGCTGGATAATTCGT 58.990 47.619 10.32 0.00 0.00 3.85
1862 2636 1.153647 CGCGCCAGGAACATGTAGA 60.154 57.895 0.00 0.00 0.00 2.59
1863 2637 0.530650 CGCGCCAGGAACATGTAGAT 60.531 55.000 0.00 0.00 0.00 1.98
1864 2638 0.940126 GCGCCAGGAACATGTAGATG 59.060 55.000 0.00 0.00 35.49 2.90
1865 2639 1.743772 GCGCCAGGAACATGTAGATGT 60.744 52.381 0.00 0.00 45.24 3.06
1866 2640 2.483013 GCGCCAGGAACATGTAGATGTA 60.483 50.000 5.85 0.00 42.30 2.29
1867 2641 3.384668 CGCCAGGAACATGTAGATGTAG 58.615 50.000 5.85 0.00 42.30 2.74
1880 2654 1.134280 AGATGTAGGCATGACTGGTGC 60.134 52.381 12.69 0.00 41.78 5.01
1945 2726 4.979197 GGTCACGCTATTATCTCAGAGTTG 59.021 45.833 0.00 0.00 0.00 3.16
1970 2755 7.824289 TGATAGACAAGTTTATCTGTTTCTGGG 59.176 37.037 10.80 0.00 30.56 4.45
2008 2793 6.500684 TGATTTCTGGAGATGTGTAAAAGC 57.499 37.500 0.00 0.00 0.00 3.51
2036 2822 0.300491 GCACCATACACATGCGTACG 59.700 55.000 11.84 11.84 0.00 3.67
2091 3220 6.478673 CGCATCCTTTTACACATGTGTATCTA 59.521 38.462 33.24 19.61 44.54 1.98
2105 3234 9.142515 ACATGTGTATCTAATTTGCAACATTTG 57.857 29.630 0.00 4.31 0.00 2.32
2199 3330 7.995463 ATTACTGAGAGAAAAGATTAGACGC 57.005 36.000 0.00 0.00 0.00 5.19
2240 3371 8.043113 TGACTTTATTCATCACAGAGTAGCAAT 58.957 33.333 0.00 0.00 0.00 3.56
2242 3373 8.043113 ACTTTATTCATCACAGAGTAGCAATGA 58.957 33.333 0.00 0.00 0.00 2.57
2264 3395 4.408182 AATAAAGTCAGGGATGGAGTCG 57.592 45.455 0.00 0.00 0.00 4.18
2275 3406 1.825474 GATGGAGTCGTCCCAGAAAGA 59.175 52.381 0.00 0.00 43.15 2.52
2285 3416 2.751806 GTCCCAGAAAGATGAGGCTTTG 59.248 50.000 0.00 0.00 38.16 2.77
2288 3419 2.751806 CCAGAAAGATGAGGCTTTGGAC 59.248 50.000 0.00 0.00 38.16 4.02
2314 3445 9.620660 CGAAAAAGCCAACTTAGTTATACAATT 57.379 29.630 0.00 0.00 34.05 2.32
2328 3459 8.374184 AGTTATACAATTTGCTACCCCATTTT 57.626 30.769 0.00 0.00 0.00 1.82
2341 3472 6.017357 GCTACCCCATTTTCCTATCTAAAACG 60.017 42.308 0.00 0.00 0.00 3.60
2357 3488 8.847444 ATCTAAAACGATGATGAAATTCAAGC 57.153 30.769 0.00 0.00 0.00 4.01
2362 3493 4.201753 ACGATGATGAAATTCAAGCAGACG 60.202 41.667 18.73 18.73 31.92 4.18
2370 3501 1.593196 TTCAAGCAGACGAAACCCAG 58.407 50.000 0.00 0.00 0.00 4.45
2396 3527 6.317789 GCTAGTTGCTTGCATTCCATAATA 57.682 37.500 0.00 0.00 38.95 0.98
2400 3531 9.403110 CTAGTTGCTTGCATTCCATAATATTTC 57.597 33.333 0.00 0.00 0.00 2.17
2401 3532 7.784037 AGTTGCTTGCATTCCATAATATTTCA 58.216 30.769 0.00 0.00 0.00 2.69
2402 3533 8.426489 AGTTGCTTGCATTCCATAATATTTCAT 58.574 29.630 0.00 0.00 0.00 2.57
2403 3534 9.048446 GTTGCTTGCATTCCATAATATTTCATT 57.952 29.630 0.00 0.00 0.00 2.57
2404 3535 8.596271 TGCTTGCATTCCATAATATTTCATTG 57.404 30.769 0.00 0.00 0.00 2.82
2405 3536 8.422566 TGCTTGCATTCCATAATATTTCATTGA 58.577 29.630 0.00 0.00 0.00 2.57
2406 3537 9.431887 GCTTGCATTCCATAATATTTCATTGAT 57.568 29.630 0.00 0.00 0.00 2.57
2427 3558 9.732130 ATTGATAGAAGGGTAGAAATAGATTGC 57.268 33.333 0.00 0.00 0.00 3.56
2428 3559 8.262601 TGATAGAAGGGTAGAAATAGATTGCA 57.737 34.615 0.00 0.00 0.00 4.08
2429 3560 8.713971 TGATAGAAGGGTAGAAATAGATTGCAA 58.286 33.333 0.00 0.00 0.00 4.08
2430 3561 9.213799 GATAGAAGGGTAGAAATAGATTGCAAG 57.786 37.037 4.94 0.00 0.00 4.01
2431 3562 7.200434 AGAAGGGTAGAAATAGATTGCAAGA 57.800 36.000 4.94 0.00 0.00 3.02
2432 3563 7.810260 AGAAGGGTAGAAATAGATTGCAAGAT 58.190 34.615 4.94 0.00 0.00 2.40
2433 3564 7.936301 AGAAGGGTAGAAATAGATTGCAAGATC 59.064 37.037 4.94 0.00 0.00 2.75
2434 3565 7.385894 AGGGTAGAAATAGATTGCAAGATCT 57.614 36.000 4.94 6.54 39.59 2.75
2435 3566 7.449247 AGGGTAGAAATAGATTGCAAGATCTC 58.551 38.462 4.94 0.00 37.54 2.75
2436 3567 7.292120 AGGGTAGAAATAGATTGCAAGATCTCT 59.708 37.037 4.94 5.36 37.54 3.10
2437 3568 7.387397 GGGTAGAAATAGATTGCAAGATCTCTG 59.613 40.741 4.94 0.00 37.54 3.35
2438 3569 8.147058 GGTAGAAATAGATTGCAAGATCTCTGA 58.853 37.037 4.94 0.00 37.54 3.27
2439 3570 8.977505 GTAGAAATAGATTGCAAGATCTCTGAC 58.022 37.037 4.94 0.00 37.54 3.51
2440 3571 7.794041 AGAAATAGATTGCAAGATCTCTGACT 58.206 34.615 4.94 0.57 37.54 3.41
2441 3572 7.927629 AGAAATAGATTGCAAGATCTCTGACTC 59.072 37.037 4.94 1.83 37.54 3.36
2442 3573 4.044336 AGATTGCAAGATCTCTGACTCG 57.956 45.455 4.94 0.00 30.67 4.18
2443 3574 3.698539 AGATTGCAAGATCTCTGACTCGA 59.301 43.478 4.94 0.00 30.67 4.04
2444 3575 3.942130 TTGCAAGATCTCTGACTCGAA 57.058 42.857 0.00 0.00 0.00 3.71
2445 3576 3.942130 TGCAAGATCTCTGACTCGAAA 57.058 42.857 0.00 0.00 0.00 3.46
2446 3577 3.579709 TGCAAGATCTCTGACTCGAAAC 58.420 45.455 0.00 0.00 0.00 2.78
2447 3578 2.926838 GCAAGATCTCTGACTCGAAACC 59.073 50.000 0.00 0.00 0.00 3.27
2448 3579 3.615110 GCAAGATCTCTGACTCGAAACCA 60.615 47.826 0.00 0.00 0.00 3.67
2449 3580 4.560128 CAAGATCTCTGACTCGAAACCAA 58.440 43.478 0.00 0.00 0.00 3.67
2450 3581 5.174395 CAAGATCTCTGACTCGAAACCAAT 58.826 41.667 0.00 0.00 0.00 3.16
2451 3582 6.333416 CAAGATCTCTGACTCGAAACCAATA 58.667 40.000 0.00 0.00 0.00 1.90
2452 3583 6.723298 AGATCTCTGACTCGAAACCAATAT 57.277 37.500 0.00 0.00 0.00 1.28
2453 3584 7.825331 AGATCTCTGACTCGAAACCAATATA 57.175 36.000 0.00 0.00 0.00 0.86
2454 3585 8.415950 AGATCTCTGACTCGAAACCAATATAT 57.584 34.615 0.00 0.00 0.00 0.86
2455 3586 9.521841 AGATCTCTGACTCGAAACCAATATATA 57.478 33.333 0.00 0.00 0.00 0.86
2561 3692 0.038526 AGGCGACAGTGTAAACTCCG 60.039 55.000 0.00 0.00 0.00 4.63
2624 3755 0.535335 GGTTGTATGGCAGAGTCGGA 59.465 55.000 0.00 0.00 0.00 4.55
2625 3756 1.066430 GGTTGTATGGCAGAGTCGGAA 60.066 52.381 0.00 0.00 0.00 4.30
2632 3763 0.105039 GGCAGAGTCGGAACCATAGG 59.895 60.000 0.00 0.00 0.00 2.57
2735 3866 0.391130 GTGTGTATCTTGAGGCGCCA 60.391 55.000 31.54 7.75 0.00 5.69
2751 3882 2.452813 CCAACGAGGAACCATCGCG 61.453 63.158 0.00 0.00 43.91 5.87
2787 3918 1.226974 CTCGGTGATGTAGTGCCCG 60.227 63.158 0.00 0.00 39.98 6.13
2801 3932 3.566210 CCCGGTCACCCAGTGGTT 61.566 66.667 8.74 0.00 44.75 3.67
2803 3934 2.357034 CGGTCACCCAGTGGTTCG 60.357 66.667 8.74 0.67 44.75 3.95
2878 4009 2.092968 GGCATGGACCTCTATGTTGTGA 60.093 50.000 0.00 0.00 37.20 3.58
2984 4115 1.227674 CGCCTAGGCCACCAAGATC 60.228 63.158 28.09 0.00 37.98 2.75
2987 4118 0.181350 CCTAGGCCACCAAGATCCAC 59.819 60.000 5.01 0.00 0.00 4.02
2988 4119 0.181350 CTAGGCCACCAAGATCCACC 59.819 60.000 5.01 0.00 0.00 4.61
2989 4120 1.622607 TAGGCCACCAAGATCCACCG 61.623 60.000 5.01 0.00 0.00 4.94
2990 4121 2.438434 GCCACCAAGATCCACCGG 60.438 66.667 0.00 0.00 0.00 5.28
2991 4122 2.438434 CCACCAAGATCCACCGGC 60.438 66.667 0.00 0.00 0.00 6.13
2992 4123 2.438434 CACCAAGATCCACCGGCC 60.438 66.667 0.00 0.00 0.00 6.13
2993 4124 2.610859 ACCAAGATCCACCGGCCT 60.611 61.111 0.00 0.00 0.00 5.19
2994 4125 1.306654 ACCAAGATCCACCGGCCTA 60.307 57.895 0.00 0.00 0.00 3.93
2995 4126 1.338136 ACCAAGATCCACCGGCCTAG 61.338 60.000 0.00 0.00 0.00 3.02
2996 4127 1.447643 CAAGATCCACCGGCCTAGG 59.552 63.158 3.67 3.67 37.30 3.02
2997 4128 1.766461 AAGATCCACCGGCCTAGGG 60.766 63.158 11.72 0.00 35.02 3.53
2998 4129 2.122989 GATCCACCGGCCTAGGGA 60.123 66.667 11.72 4.71 35.02 4.20
2999 4130 1.536662 GATCCACCGGCCTAGGGAT 60.537 63.158 16.18 16.18 42.66 3.85
3000 4131 1.073706 ATCCACCGGCCTAGGGATT 60.074 57.895 11.72 0.00 36.79 3.01
3001 4132 0.697854 ATCCACCGGCCTAGGGATTT 60.698 55.000 11.72 0.00 36.79 2.17
3002 4133 0.917333 TCCACCGGCCTAGGGATTTT 60.917 55.000 11.72 0.00 35.02 1.82
3003 4134 0.465642 CCACCGGCCTAGGGATTTTC 60.466 60.000 11.72 0.00 35.02 2.29
3004 4135 0.546598 CACCGGCCTAGGGATTTTCT 59.453 55.000 11.72 0.00 35.02 2.52
3005 4136 1.766496 CACCGGCCTAGGGATTTTCTA 59.234 52.381 11.72 0.00 35.02 2.10
3006 4137 2.372172 CACCGGCCTAGGGATTTTCTAT 59.628 50.000 11.72 0.00 35.02 1.98
3007 4138 2.638363 ACCGGCCTAGGGATTTTCTATC 59.362 50.000 11.72 0.00 35.02 2.08
3008 4139 2.637872 CCGGCCTAGGGATTTTCTATCA 59.362 50.000 11.72 0.00 0.00 2.15
3009 4140 3.264450 CCGGCCTAGGGATTTTCTATCAT 59.736 47.826 11.72 0.00 0.00 2.45
3010 4141 4.469945 CCGGCCTAGGGATTTTCTATCATA 59.530 45.833 11.72 0.00 0.00 2.15
3011 4142 5.395768 CCGGCCTAGGGATTTTCTATCATAG 60.396 48.000 11.72 0.00 0.00 2.23
3012 4143 5.432645 GGCCTAGGGATTTTCTATCATAGC 58.567 45.833 11.72 0.00 0.00 2.97
3013 4144 5.190726 GGCCTAGGGATTTTCTATCATAGCT 59.809 44.000 11.72 0.00 0.00 3.32
3014 4145 6.296720 GGCCTAGGGATTTTCTATCATAGCTT 60.297 42.308 11.72 0.00 0.00 3.74
3015 4146 6.597280 GCCTAGGGATTTTCTATCATAGCTTG 59.403 42.308 11.72 0.00 0.00 4.01
3016 4147 6.597280 CCTAGGGATTTTCTATCATAGCTTGC 59.403 42.308 0.00 0.00 0.00 4.01
3017 4148 6.198237 AGGGATTTTCTATCATAGCTTGCT 57.802 37.500 0.00 0.00 0.00 3.91
3018 4149 6.237154 AGGGATTTTCTATCATAGCTTGCTC 58.763 40.000 0.00 0.00 0.00 4.26
3019 4150 6.044171 AGGGATTTTCTATCATAGCTTGCTCT 59.956 38.462 0.00 0.00 0.00 4.09
3020 4151 7.236432 AGGGATTTTCTATCATAGCTTGCTCTA 59.764 37.037 0.00 0.00 0.00 2.43
3021 4152 7.548780 GGGATTTTCTATCATAGCTTGCTCTAG 59.451 40.741 0.00 0.00 0.00 2.43
3022 4153 8.310382 GGATTTTCTATCATAGCTTGCTCTAGA 58.690 37.037 0.00 0.00 0.00 2.43
3023 4154 9.703892 GATTTTCTATCATAGCTTGCTCTAGAA 57.296 33.333 0.00 5.78 0.00 2.10
3028 4159 8.465999 TCTATCATAGCTTGCTCTAGAAATAGC 58.534 37.037 0.00 10.22 39.25 2.97
3029 4160 6.662865 TCATAGCTTGCTCTAGAAATAGCT 57.337 37.500 19.81 19.81 41.44 3.32
3030 4161 7.767250 TCATAGCTTGCTCTAGAAATAGCTA 57.233 36.000 21.85 21.85 43.09 3.32
3031 4162 8.359875 TCATAGCTTGCTCTAGAAATAGCTAT 57.640 34.615 23.42 23.42 46.96 2.97
3033 4164 6.662865 AGCTTGCTCTAGAAATAGCTATGA 57.337 37.500 16.36 0.00 39.53 2.15
3034 4165 6.690530 AGCTTGCTCTAGAAATAGCTATGAG 58.309 40.000 16.36 10.01 39.53 2.90
3035 4166 6.493115 AGCTTGCTCTAGAAATAGCTATGAGA 59.507 38.462 17.76 12.40 39.53 3.27
3036 4167 7.015098 AGCTTGCTCTAGAAATAGCTATGAGAA 59.985 37.037 17.76 8.02 39.53 2.87
3037 4168 7.116233 GCTTGCTCTAGAAATAGCTATGAGAAC 59.884 40.741 17.76 10.22 39.53 3.01
3038 4169 6.987386 TGCTCTAGAAATAGCTATGAGAACC 58.013 40.000 17.76 8.99 39.53 3.62
3039 4170 6.090129 GCTCTAGAAATAGCTATGAGAACCG 58.910 44.000 17.76 4.10 35.80 4.44
3040 4171 6.294286 GCTCTAGAAATAGCTATGAGAACCGT 60.294 42.308 17.76 0.00 35.80 4.83
3041 4172 7.584122 TCTAGAAATAGCTATGAGAACCGTT 57.416 36.000 7.09 0.00 0.00 4.44
3042 4173 7.426410 TCTAGAAATAGCTATGAGAACCGTTG 58.574 38.462 7.09 0.00 0.00 4.10
3043 4174 5.360591 AGAAATAGCTATGAGAACCGTTGG 58.639 41.667 7.09 0.00 0.00 3.77
3044 4175 4.755266 AATAGCTATGAGAACCGTTGGT 57.245 40.909 7.09 0.00 37.65 3.67
3045 4176 2.386661 AGCTATGAGAACCGTTGGTG 57.613 50.000 0.00 0.00 35.34 4.17
3046 4177 1.623811 AGCTATGAGAACCGTTGGTGT 59.376 47.619 0.00 0.00 35.34 4.16
3047 4178 2.038557 AGCTATGAGAACCGTTGGTGTT 59.961 45.455 0.00 0.00 35.34 3.32
3048 4179 2.159627 GCTATGAGAACCGTTGGTGTTG 59.840 50.000 0.00 0.00 35.34 3.33
3049 4180 0.951558 ATGAGAACCGTTGGTGTTGC 59.048 50.000 0.00 0.00 35.34 4.17
3050 4181 1.098712 TGAGAACCGTTGGTGTTGCC 61.099 55.000 0.00 0.00 35.34 4.52
3051 4182 0.818040 GAGAACCGTTGGTGTTGCCT 60.818 55.000 0.00 0.00 35.34 4.75
3052 4183 0.818040 AGAACCGTTGGTGTTGCCTC 60.818 55.000 0.00 0.00 35.34 4.70
3053 4184 2.113131 GAACCGTTGGTGTTGCCTCG 62.113 60.000 0.00 0.00 35.34 4.63
3054 4185 2.590575 CCGTTGGTGTTGCCTCGT 60.591 61.111 0.00 0.00 38.35 4.18
3055 4186 2.631428 CGTTGGTGTTGCCTCGTG 59.369 61.111 0.00 0.00 38.35 4.35
3056 4187 1.885388 CGTTGGTGTTGCCTCGTGA 60.885 57.895 0.00 0.00 38.35 4.35
3057 4188 1.227999 CGTTGGTGTTGCCTCGTGAT 61.228 55.000 0.00 0.00 38.35 3.06
3058 4189 0.951558 GTTGGTGTTGCCTCGTGATT 59.048 50.000 0.00 0.00 38.35 2.57
3059 4190 1.069227 GTTGGTGTTGCCTCGTGATTC 60.069 52.381 0.00 0.00 38.35 2.52
3060 4191 0.948623 TGGTGTTGCCTCGTGATTCG 60.949 55.000 0.00 0.00 38.35 3.34
3061 4192 0.669318 GGTGTTGCCTCGTGATTCGA 60.669 55.000 0.00 0.00 46.83 3.71
3070 4201 1.698165 TCGTGATTCGAACTGAGTGC 58.302 50.000 0.00 0.00 45.98 4.40
3071 4202 1.000717 TCGTGATTCGAACTGAGTGCA 60.001 47.619 0.00 0.00 45.98 4.57
3072 4203 1.995484 CGTGATTCGAACTGAGTGCAT 59.005 47.619 0.00 0.00 42.86 3.96
3073 4204 2.222663 CGTGATTCGAACTGAGTGCATG 60.223 50.000 0.00 0.00 42.86 4.06
3074 4205 2.094894 GTGATTCGAACTGAGTGCATGG 59.905 50.000 0.00 0.00 0.00 3.66
3075 4206 2.289631 TGATTCGAACTGAGTGCATGGT 60.290 45.455 0.00 0.00 0.00 3.55
3076 4207 1.795768 TTCGAACTGAGTGCATGGTC 58.204 50.000 0.00 0.00 0.00 4.02
3077 4208 0.037326 TCGAACTGAGTGCATGGTCC 60.037 55.000 0.00 0.00 0.00 4.46
3078 4209 0.036952 CGAACTGAGTGCATGGTCCT 60.037 55.000 0.00 0.00 0.00 3.85
3079 4210 1.204704 CGAACTGAGTGCATGGTCCTA 59.795 52.381 0.00 0.00 0.00 2.94
3080 4211 2.159043 CGAACTGAGTGCATGGTCCTAT 60.159 50.000 0.00 0.00 0.00 2.57
3081 4212 3.679917 CGAACTGAGTGCATGGTCCTATT 60.680 47.826 0.00 0.00 0.00 1.73
3082 4213 3.550437 ACTGAGTGCATGGTCCTATTC 57.450 47.619 0.00 0.00 0.00 1.75
3083 4214 3.110705 ACTGAGTGCATGGTCCTATTCT 58.889 45.455 0.00 0.00 0.00 2.40
3084 4215 4.290093 ACTGAGTGCATGGTCCTATTCTA 58.710 43.478 0.00 0.00 0.00 2.10
3085 4216 4.904251 ACTGAGTGCATGGTCCTATTCTAT 59.096 41.667 0.00 0.00 0.00 1.98
3086 4217 6.077993 ACTGAGTGCATGGTCCTATTCTATA 58.922 40.000 0.00 0.00 0.00 1.31
3087 4218 6.728164 ACTGAGTGCATGGTCCTATTCTATAT 59.272 38.462 0.00 0.00 0.00 0.86
3088 4219 7.236432 ACTGAGTGCATGGTCCTATTCTATATT 59.764 37.037 0.00 0.00 0.00 1.28
3089 4220 7.977818 TGAGTGCATGGTCCTATTCTATATTT 58.022 34.615 0.00 0.00 0.00 1.40
3090 4221 8.439971 TGAGTGCATGGTCCTATTCTATATTTT 58.560 33.333 0.00 0.00 0.00 1.82
3091 4222 8.627208 AGTGCATGGTCCTATTCTATATTTTG 57.373 34.615 0.00 0.00 0.00 2.44
3092 4223 7.175641 AGTGCATGGTCCTATTCTATATTTTGC 59.824 37.037 0.00 0.00 0.00 3.68
3093 4224 6.434028 TGCATGGTCCTATTCTATATTTTGCC 59.566 38.462 0.00 0.00 0.00 4.52
3094 4225 6.127619 GCATGGTCCTATTCTATATTTTGCCC 60.128 42.308 0.00 0.00 0.00 5.36
3095 4226 6.523035 TGGTCCTATTCTATATTTTGCCCA 57.477 37.500 0.00 0.00 0.00 5.36
3096 4227 7.102518 TGGTCCTATTCTATATTTTGCCCAT 57.897 36.000 0.00 0.00 0.00 4.00
3097 4228 7.534852 TGGTCCTATTCTATATTTTGCCCATT 58.465 34.615 0.00 0.00 0.00 3.16
3098 4229 8.010105 TGGTCCTATTCTATATTTTGCCCATTT 58.990 33.333 0.00 0.00 0.00 2.32
3099 4230 8.306761 GGTCCTATTCTATATTTTGCCCATTTG 58.693 37.037 0.00 0.00 0.00 2.32
3100 4231 9.077885 GTCCTATTCTATATTTTGCCCATTTGA 57.922 33.333 0.00 0.00 0.00 2.69
3101 4232 9.827198 TCCTATTCTATATTTTGCCCATTTGAT 57.173 29.630 0.00 0.00 0.00 2.57
3102 4233 9.865321 CCTATTCTATATTTTGCCCATTTGATG 57.135 33.333 0.00 0.00 0.00 3.07
3111 4242 7.627298 TTTTGCCCATTTGATGAATTATTGG 57.373 32.000 0.00 0.00 0.00 3.16
3112 4243 6.556974 TTGCCCATTTGATGAATTATTGGA 57.443 33.333 0.00 0.00 0.00 3.53
3113 4244 6.164417 TGCCCATTTGATGAATTATTGGAG 57.836 37.500 0.00 0.00 0.00 3.86
3114 4245 5.070714 TGCCCATTTGATGAATTATTGGAGG 59.929 40.000 0.00 0.00 0.00 4.30
3115 4246 5.070847 GCCCATTTGATGAATTATTGGAGGT 59.929 40.000 0.00 0.00 0.00 3.85
3116 4247 6.518493 CCCATTTGATGAATTATTGGAGGTG 58.482 40.000 0.00 0.00 0.00 4.00
3117 4248 6.463331 CCCATTTGATGAATTATTGGAGGTGG 60.463 42.308 0.00 0.00 0.00 4.61
3118 4249 6.463331 CCATTTGATGAATTATTGGAGGTGGG 60.463 42.308 0.00 0.00 0.00 4.61
3119 4250 4.183223 TGATGAATTATTGGAGGTGGGG 57.817 45.455 0.00 0.00 0.00 4.96
3120 4251 3.531397 TGATGAATTATTGGAGGTGGGGT 59.469 43.478 0.00 0.00 0.00 4.95
3121 4252 3.380471 TGAATTATTGGAGGTGGGGTG 57.620 47.619 0.00 0.00 0.00 4.61
3122 4253 2.024464 TGAATTATTGGAGGTGGGGTGG 60.024 50.000 0.00 0.00 0.00 4.61
3123 4254 0.261696 ATTATTGGAGGTGGGGTGGC 59.738 55.000 0.00 0.00 0.00 5.01
3124 4255 1.143329 TTATTGGAGGTGGGGTGGCA 61.143 55.000 0.00 0.00 0.00 4.92
3125 4256 1.570857 TATTGGAGGTGGGGTGGCAG 61.571 60.000 0.00 0.00 0.00 4.85
3137 4268 3.899371 TGGCAGGCCAAGTACTGA 58.101 55.556 11.25 0.00 44.12 3.41
3138 4269 1.374947 TGGCAGGCCAAGTACTGAC 59.625 57.895 11.25 0.00 44.12 3.51
3139 4270 1.377333 GGCAGGCCAAGTACTGACC 60.377 63.158 5.01 0.00 36.74 4.02
3140 4271 1.741770 GCAGGCCAAGTACTGACCG 60.742 63.158 5.01 0.00 36.86 4.79
3141 4272 1.741770 CAGGCCAAGTACTGACCGC 60.742 63.158 5.01 0.00 36.86 5.68
3142 4273 1.913762 AGGCCAAGTACTGACCGCT 60.914 57.895 5.01 0.00 0.00 5.52
3143 4274 1.003718 GGCCAAGTACTGACCGCTT 60.004 57.895 0.00 0.00 0.00 4.68
3144 4275 0.605589 GGCCAAGTACTGACCGCTTT 60.606 55.000 0.00 0.00 0.00 3.51
3145 4276 1.338389 GGCCAAGTACTGACCGCTTTA 60.338 52.381 0.00 0.00 0.00 1.85
3146 4277 2.000447 GCCAAGTACTGACCGCTTTAG 59.000 52.381 0.00 0.00 0.00 1.85
3147 4278 2.353406 GCCAAGTACTGACCGCTTTAGA 60.353 50.000 0.00 0.00 0.00 2.10
3148 4279 3.251571 CCAAGTACTGACCGCTTTAGAC 58.748 50.000 0.00 0.00 0.00 2.59
3149 4280 3.251571 CAAGTACTGACCGCTTTAGACC 58.748 50.000 0.00 0.00 0.00 3.85
3150 4281 2.805194 AGTACTGACCGCTTTAGACCT 58.195 47.619 0.00 0.00 0.00 3.85
3151 4282 2.754002 AGTACTGACCGCTTTAGACCTC 59.246 50.000 0.00 0.00 0.00 3.85
3152 4283 1.926108 ACTGACCGCTTTAGACCTCT 58.074 50.000 0.00 0.00 0.00 3.69
3153 4284 2.249139 ACTGACCGCTTTAGACCTCTT 58.751 47.619 0.00 0.00 0.00 2.85
3154 4285 2.231721 ACTGACCGCTTTAGACCTCTTC 59.768 50.000 0.00 0.00 0.00 2.87
3155 4286 1.549170 TGACCGCTTTAGACCTCTTCC 59.451 52.381 0.00 0.00 0.00 3.46
3156 4287 1.549170 GACCGCTTTAGACCTCTTCCA 59.451 52.381 0.00 0.00 0.00 3.53
3157 4288 1.975680 ACCGCTTTAGACCTCTTCCAA 59.024 47.619 0.00 0.00 0.00 3.53
3158 4289 2.572104 ACCGCTTTAGACCTCTTCCAAT 59.428 45.455 0.00 0.00 0.00 3.16
3159 4290 2.939103 CCGCTTTAGACCTCTTCCAATG 59.061 50.000 0.00 0.00 0.00 2.82
3160 4291 2.352960 CGCTTTAGACCTCTTCCAATGC 59.647 50.000 0.00 0.00 0.00 3.56
3161 4292 3.347216 GCTTTAGACCTCTTCCAATGCA 58.653 45.455 0.00 0.00 0.00 3.96
3162 4293 3.950395 GCTTTAGACCTCTTCCAATGCAT 59.050 43.478 0.00 0.00 0.00 3.96
3163 4294 4.400567 GCTTTAGACCTCTTCCAATGCATT 59.599 41.667 5.99 5.99 0.00 3.56
3164 4295 5.678107 GCTTTAGACCTCTTCCAATGCATTG 60.678 44.000 28.91 28.91 37.52 2.82
3165 4296 3.726557 AGACCTCTTCCAATGCATTGA 57.273 42.857 35.47 20.78 40.14 2.57
3166 4297 4.246712 AGACCTCTTCCAATGCATTGAT 57.753 40.909 35.47 14.48 40.14 2.57
3167 4298 3.952323 AGACCTCTTCCAATGCATTGATG 59.048 43.478 35.47 24.16 40.14 3.07
3181 4312 3.460103 CATTGATGCTAAAATGGGGTGC 58.540 45.455 0.00 0.00 31.46 5.01
3182 4313 2.530460 TGATGCTAAAATGGGGTGCT 57.470 45.000 0.00 0.00 0.00 4.40
3183 4314 3.660970 TGATGCTAAAATGGGGTGCTA 57.339 42.857 0.00 0.00 0.00 3.49
3184 4315 3.974719 TGATGCTAAAATGGGGTGCTAA 58.025 40.909 0.00 0.00 0.00 3.09
3185 4316 3.953612 TGATGCTAAAATGGGGTGCTAAG 59.046 43.478 0.00 0.00 0.00 2.18
3186 4317 3.449746 TGCTAAAATGGGGTGCTAAGT 57.550 42.857 0.00 0.00 0.00 2.24
3187 4318 3.088532 TGCTAAAATGGGGTGCTAAGTG 58.911 45.455 0.00 0.00 0.00 3.16
3188 4319 2.159240 GCTAAAATGGGGTGCTAAGTGC 60.159 50.000 0.00 0.00 43.25 4.40
3214 4345 9.023967 CATTAAAATGCTTAGCAACTAATGTCC 57.976 33.333 23.40 0.00 43.62 4.02
3215 4346 5.582689 AAATGCTTAGCAACTAATGTCCC 57.417 39.130 12.08 0.00 43.62 4.46
3216 4347 2.999331 TGCTTAGCAACTAATGTCCCC 58.001 47.619 3.67 0.00 34.76 4.81
3217 4348 2.307392 TGCTTAGCAACTAATGTCCCCA 59.693 45.455 3.67 0.00 34.76 4.96
3218 4349 3.245087 TGCTTAGCAACTAATGTCCCCAA 60.245 43.478 3.67 0.00 34.76 4.12
3219 4350 3.954258 GCTTAGCAACTAATGTCCCCAAT 59.046 43.478 0.00 0.00 0.00 3.16
3220 4351 4.202050 GCTTAGCAACTAATGTCCCCAATG 60.202 45.833 0.00 0.00 0.00 2.82
3221 4352 2.102578 AGCAACTAATGTCCCCAATGC 58.897 47.619 0.00 0.00 0.00 3.56
3222 4353 1.824230 GCAACTAATGTCCCCAATGCA 59.176 47.619 0.00 0.00 33.00 3.96
3223 4354 2.431782 GCAACTAATGTCCCCAATGCAT 59.568 45.455 0.00 0.00 33.00 3.96
3224 4355 3.118665 GCAACTAATGTCCCCAATGCATT 60.119 43.478 5.99 5.99 36.83 3.56
3225 4356 4.435425 CAACTAATGTCCCCAATGCATTG 58.565 43.478 28.91 28.91 34.97 2.82
3243 4374 4.485163 CATTGGTGCTTAGGTTTTGTAGC 58.515 43.478 0.00 0.00 0.00 3.58
3244 4375 3.502123 TGGTGCTTAGGTTTTGTAGCT 57.498 42.857 0.00 0.00 38.39 3.32
3245 4376 4.627284 TGGTGCTTAGGTTTTGTAGCTA 57.373 40.909 0.00 0.00 35.80 3.32
3246 4377 4.975631 TGGTGCTTAGGTTTTGTAGCTAA 58.024 39.130 0.00 0.00 42.83 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.530431 CACAACACCCAGCAAAAGGC 60.530 55.000 0.00 0.00 45.30 4.35
10 11 0.104671 CCACAACACCCAGCAAAAGG 59.895 55.000 0.00 0.00 0.00 3.11
11 12 1.110442 TCCACAACACCCAGCAAAAG 58.890 50.000 0.00 0.00 0.00 2.27
12 13 1.561643 TTCCACAACACCCAGCAAAA 58.438 45.000 0.00 0.00 0.00 2.44
13 14 1.561643 TTTCCACAACACCCAGCAAA 58.438 45.000 0.00 0.00 0.00 3.68
14 15 1.205893 GTTTTCCACAACACCCAGCAA 59.794 47.619 0.00 0.00 0.00 3.91
15 16 0.820871 GTTTTCCACAACACCCAGCA 59.179 50.000 0.00 0.00 0.00 4.41
16 17 1.067060 GAGTTTTCCACAACACCCAGC 59.933 52.381 0.00 0.00 0.00 4.85
17 18 1.333619 CGAGTTTTCCACAACACCCAG 59.666 52.381 0.00 0.00 0.00 4.45
18 19 1.340211 ACGAGTTTTCCACAACACCCA 60.340 47.619 0.00 0.00 0.00 4.51
19 20 1.385528 ACGAGTTTTCCACAACACCC 58.614 50.000 0.00 0.00 0.00 4.61
20 21 4.823790 ATTACGAGTTTTCCACAACACC 57.176 40.909 0.00 0.00 0.00 4.16
21 22 6.617953 GCTCTATTACGAGTTTTCCACAACAC 60.618 42.308 0.00 0.00 33.55 3.32
22 23 5.407387 GCTCTATTACGAGTTTTCCACAACA 59.593 40.000 0.00 0.00 33.55 3.33
23 24 5.163884 GGCTCTATTACGAGTTTTCCACAAC 60.164 44.000 0.00 0.00 33.55 3.32
29 30 4.434520 AGCAGGCTCTATTACGAGTTTTC 58.565 43.478 0.00 0.00 33.55 2.29
60 61 6.328934 TCAACAGGGGCTGATATCAACTTATA 59.671 38.462 6.90 0.00 35.18 0.98
61 62 5.132648 TCAACAGGGGCTGATATCAACTTAT 59.867 40.000 6.90 0.00 35.18 1.73
92 93 4.259970 CGAAGGAAAGATCGCATGTAACAG 60.260 45.833 0.00 0.00 31.71 3.16
102 103 3.064207 TCCAAACACGAAGGAAAGATCG 58.936 45.455 0.00 0.00 44.33 3.69
104 105 3.815401 CTGTCCAAACACGAAGGAAAGAT 59.185 43.478 0.00 0.00 38.78 2.40
207 208 3.043419 AGAAGTCGTCTGCGCAGT 58.957 55.556 34.70 16.58 34.29 4.40
216 217 1.672356 GGCCATGCACAGAAGTCGT 60.672 57.895 0.00 0.00 0.00 4.34
278 279 3.005554 CACTCCAGCATCTCATCGTTTT 58.994 45.455 0.00 0.00 0.00 2.43
279 280 2.234661 TCACTCCAGCATCTCATCGTTT 59.765 45.455 0.00 0.00 0.00 3.60
285 288 1.274447 CACAGTCACTCCAGCATCTCA 59.726 52.381 0.00 0.00 0.00 3.27
379 387 3.118592 CCAAGACTCCAGGTGAGATAACC 60.119 52.174 0.00 0.00 44.42 2.85
388 396 2.050269 CGACACCAAGACTCCAGGT 58.950 57.895 0.00 0.00 35.65 4.00
402 424 5.940192 AAATGACTAAGAAACATGCGACA 57.060 34.783 0.00 0.00 0.00 4.35
460 546 1.472201 CGCCTCTCAGAAATGCTAGCA 60.472 52.381 21.85 21.85 0.00 3.49
468 554 1.860641 TCCCATACGCCTCTCAGAAA 58.139 50.000 0.00 0.00 0.00 2.52
494 586 4.550076 ATGGCATCTAGGTATTCAGCTC 57.450 45.455 0.00 0.00 33.61 4.09
496 588 3.190118 GCAATGGCATCTAGGTATTCAGC 59.810 47.826 0.00 0.00 40.72 4.26
515 607 2.429971 TGCACACCTCAAAGATTTGCAA 59.570 40.909 0.00 0.00 35.65 4.08
556 648 9.352784 CAACAACACTATCAGAAAAAGAAACAA 57.647 29.630 0.00 0.00 0.00 2.83
583 675 3.433306 CCAGATTGGTACCAGGTGAAA 57.567 47.619 15.65 0.00 31.35 2.69
612 704 4.101585 TGGTGACAAGTGTTCTCTGAGAAT 59.898 41.667 21.86 6.05 35.04 2.40
613 705 3.450817 TGGTGACAAGTGTTCTCTGAGAA 59.549 43.478 15.82 15.82 37.44 2.87
629 721 2.715046 TGAAGGCAGATTGATGGTGAC 58.285 47.619 0.00 0.00 0.00 3.67
651 743 8.325046 GGAATCAGTCCCTTTCATAGCTATATT 58.675 37.037 5.77 0.00 41.10 1.28
702 796 3.502211 GCAGCAAGTTAAAAGCCTACTCA 59.498 43.478 0.00 0.00 0.00 3.41
709 803 5.920273 TCACATAAAGCAGCAAGTTAAAAGC 59.080 36.000 0.00 0.00 0.00 3.51
713 807 8.792633 ACTATTTCACATAAAGCAGCAAGTTAA 58.207 29.630 0.00 0.00 0.00 2.01
714 808 8.335532 ACTATTTCACATAAAGCAGCAAGTTA 57.664 30.769 0.00 0.00 0.00 2.24
781 876 7.589221 GCTTCTTGTACATTTTTCTGACTTCAG 59.411 37.037 0.00 0.00 45.08 3.02
795 890 4.083324 CCATCAAACGTGCTTCTTGTACAT 60.083 41.667 0.00 0.00 0.00 2.29
818 934 2.510768 CGTGTAGGTCAGGGAATAGC 57.489 55.000 0.00 0.00 0.00 2.97
826 942 1.687123 CCTATTCCCCGTGTAGGTCAG 59.313 57.143 0.00 0.00 38.74 3.51
827 943 1.288633 TCCTATTCCCCGTGTAGGTCA 59.711 52.381 0.00 0.00 37.01 4.02
829 945 2.606378 GATCCTATTCCCCGTGTAGGT 58.394 52.381 0.00 0.00 37.01 3.08
832 948 1.624336 CGGATCCTATTCCCCGTGTA 58.376 55.000 10.75 0.00 37.40 2.90
833 949 1.755393 GCGGATCCTATTCCCCGTGT 61.755 60.000 10.75 0.00 43.51 4.49
834 950 1.004918 GCGGATCCTATTCCCCGTG 60.005 63.158 10.75 0.00 43.51 4.94
835 951 2.214920 GGCGGATCCTATTCCCCGT 61.215 63.158 10.75 0.00 43.51 5.28
837 953 1.486726 CTATGGCGGATCCTATTCCCC 59.513 57.143 10.75 1.21 35.26 4.81
838 954 1.134371 GCTATGGCGGATCCTATTCCC 60.134 57.143 10.75 2.98 35.26 3.97
839 955 1.834263 AGCTATGGCGGATCCTATTCC 59.166 52.381 10.75 6.25 44.37 3.01
840 956 2.497675 TCAGCTATGGCGGATCCTATTC 59.502 50.000 10.75 0.00 44.37 1.75
842 958 2.238084 TCAGCTATGGCGGATCCTAT 57.762 50.000 10.75 4.32 44.37 2.57
846 962 2.246719 ACTTTCAGCTATGGCGGATC 57.753 50.000 4.51 0.00 41.76 3.36
847 963 2.037772 CCTACTTTCAGCTATGGCGGAT 59.962 50.000 4.51 0.00 41.76 4.18
848 964 1.412710 CCTACTTTCAGCTATGGCGGA 59.587 52.381 0.00 0.00 44.37 5.54
849 965 1.541233 CCCTACTTTCAGCTATGGCGG 60.541 57.143 0.00 0.00 44.37 6.13
850 966 1.412710 TCCCTACTTTCAGCTATGGCG 59.587 52.381 0.00 0.00 44.37 5.69
853 969 3.827008 TGCTCCCTACTTTCAGCTATG 57.173 47.619 0.00 0.00 32.76 2.23
854 970 3.777522 AGTTGCTCCCTACTTTCAGCTAT 59.222 43.478 0.00 0.00 32.76 2.97
859 991 2.054799 ACCAGTTGCTCCCTACTTTCA 58.945 47.619 0.00 0.00 0.00 2.69
878 1010 3.746492 ACCAGATGACAAACGCTCTTAAC 59.254 43.478 0.00 0.00 0.00 2.01
884 1016 1.238439 CCAACCAGATGACAAACGCT 58.762 50.000 0.00 0.00 0.00 5.07
896 1028 0.316204 ACTACGACGTTCCCAACCAG 59.684 55.000 5.50 0.00 0.00 4.00
956 1151 4.406326 ACGTGGGAACATATATACACACCA 59.594 41.667 11.09 3.58 46.14 4.17
957 1152 4.748102 CACGTGGGAACATATATACACACC 59.252 45.833 7.95 0.00 46.14 4.16
958 1153 5.353938 ACACGTGGGAACATATATACACAC 58.646 41.667 21.57 8.25 46.14 3.82
959 1154 5.601583 ACACGTGGGAACATATATACACA 57.398 39.130 21.57 0.00 46.14 3.72
975 1171 1.935873 CATAGAGGATGCCAACACGTG 59.064 52.381 15.48 15.48 0.00 4.49
1064 1262 7.864108 TTGTCCTAAGCTTGTACGTATACTA 57.136 36.000 9.86 0.00 32.00 1.82
1065 1263 6.764308 TTGTCCTAAGCTTGTACGTATACT 57.236 37.500 9.86 0.00 32.00 2.12
1077 1275 5.048434 GCTTTGTTCTTGATTGTCCTAAGCT 60.048 40.000 0.00 0.00 33.42 3.74
1202 1447 4.150454 CCCTCCTCCTCCCGCTCT 62.150 72.222 0.00 0.00 0.00 4.09
1290 1535 0.603569 TTTCGTCCTGCTCTCTGTCC 59.396 55.000 0.00 0.00 0.00 4.02
1447 1692 1.536073 CGCTGGTGGAAGGAGTGAGA 61.536 60.000 0.00 0.00 0.00 3.27
1488 1733 2.525248 CGGGCATCGTCGGTCAATG 61.525 63.158 0.00 0.00 0.00 2.82
1606 1857 0.259938 GATCCCTGGCCATGGAGTTT 59.740 55.000 30.29 17.13 33.27 2.66
1642 1893 7.066887 GGAGTTGGTTCCAAAAATGAAAAATGT 59.933 33.333 5.81 0.00 37.20 2.71
1650 1901 3.897505 AGGAGGAGTTGGTTCCAAAAATG 59.102 43.478 5.81 0.00 39.84 2.32
1712 1993 1.667154 CCTCTGATCTTCCGCCGTCA 61.667 60.000 0.00 0.00 0.00 4.35
1720 2001 0.034616 CATCCCGGCCTCTGATCTTC 59.965 60.000 0.00 0.00 0.00 2.87
1787 2561 5.560724 TCTATTTTCCCCTATAGCATGTGC 58.439 41.667 0.00 0.00 42.49 4.57
1788 2562 6.773638 ACTCTATTTTCCCCTATAGCATGTG 58.226 40.000 0.00 0.00 0.00 3.21
1789 2563 8.686739 ATACTCTATTTTCCCCTATAGCATGT 57.313 34.615 0.00 0.00 0.00 3.21
1792 2566 9.256228 CACTATACTCTATTTTCCCCTATAGCA 57.744 37.037 0.00 0.00 0.00 3.49
1793 2567 8.198778 GCACTATACTCTATTTTCCCCTATAGC 58.801 40.741 0.00 0.00 0.00 2.97
1794 2568 9.256228 TGCACTATACTCTATTTTCCCCTATAG 57.744 37.037 0.00 0.00 0.00 1.31
1795 2569 9.032624 GTGCACTATACTCTATTTTCCCCTATA 57.967 37.037 10.32 0.00 0.00 1.31
1817 2591 2.009051 CACGAATTATCCAGCAGTGCA 58.991 47.619 19.20 0.00 0.00 4.57
1818 2592 1.268234 GCACGAATTATCCAGCAGTGC 60.268 52.381 7.13 7.13 44.85 4.40
1819 2593 2.283298 AGCACGAATTATCCAGCAGTG 58.717 47.619 0.00 0.00 0.00 3.66
1830 2604 4.101790 CGCGGCCAAGCACGAATT 62.102 61.111 2.24 0.00 36.85 2.17
1862 2636 0.914644 AGCACCAGTCATGCCTACAT 59.085 50.000 0.00 0.00 44.53 2.29
1863 2637 0.036105 CAGCACCAGTCATGCCTACA 60.036 55.000 0.00 0.00 44.53 2.74
1864 2638 0.745845 CCAGCACCAGTCATGCCTAC 60.746 60.000 0.00 0.00 44.53 3.18
1865 2639 1.200760 ACCAGCACCAGTCATGCCTA 61.201 55.000 0.00 0.00 44.53 3.93
1866 2640 2.353958 CCAGCACCAGTCATGCCT 59.646 61.111 0.00 0.00 44.53 4.75
1867 2641 2.034687 ACCAGCACCAGTCATGCC 59.965 61.111 0.00 0.00 44.53 4.40
1880 2654 0.937304 CGAACCACACTGTTCACCAG 59.063 55.000 4.96 0.00 43.84 4.00
1899 2673 2.116125 AAACAGGCTGCCTCCACC 59.884 61.111 20.49 0.00 0.00 4.61
1945 2726 7.281100 CCCCAGAAACAGATAAACTTGTCTATC 59.719 40.741 0.00 0.00 0.00 2.08
1966 2751 1.684983 CATGCAGAAAATAGGCCCCAG 59.315 52.381 0.00 0.00 0.00 4.45
1970 2755 5.287226 CAGAAATCATGCAGAAAATAGGCC 58.713 41.667 0.00 0.00 0.00 5.19
2008 2793 5.217393 GCATGTGTATGGTGCATATTTCAG 58.783 41.667 0.00 0.00 38.68 3.02
2036 2822 4.858692 CGGTTTGGTTCAAATCATCATGTC 59.141 41.667 4.79 0.00 34.48 3.06
2116 3245 6.316390 GGTCGGTTGATTTCTAAACATCATCT 59.684 38.462 0.00 0.00 29.45 2.90
2118 3247 6.094048 CAGGTCGGTTGATTTCTAAACATCAT 59.906 38.462 0.00 0.00 29.45 2.45
2136 3265 3.989104 AGTGAACAACTCAGGTCGG 57.011 52.632 0.00 0.00 31.64 4.79
2178 3307 5.652994 AGCGTCTAATCTTTTCTCTCAGT 57.347 39.130 0.00 0.00 0.00 3.41
2179 3308 6.959671 AAAGCGTCTAATCTTTTCTCTCAG 57.040 37.500 0.00 0.00 0.00 3.35
2240 3371 5.626809 CGACTCCATCCCTGACTTTATTTCA 60.627 44.000 0.00 0.00 0.00 2.69
2242 3373 4.225267 ACGACTCCATCCCTGACTTTATTT 59.775 41.667 0.00 0.00 0.00 1.40
2264 3395 2.751806 CAAAGCCTCATCTTTCTGGGAC 59.248 50.000 0.00 0.00 34.31 4.46
2275 3406 3.923017 CTTTTTCGTCCAAAGCCTCAT 57.077 42.857 0.00 0.00 0.00 2.90
2285 3416 4.563337 AACTAAGTTGGCTTTTTCGTCC 57.437 40.909 0.00 0.00 36.22 4.79
2288 3419 9.620660 AATTGTATAACTAAGTTGGCTTTTTCG 57.379 29.630 0.00 0.00 36.22 3.46
2314 3445 6.584471 TTAGATAGGAAAATGGGGTAGCAA 57.416 37.500 0.00 0.00 0.00 3.91
2328 3459 9.830975 TGAATTTCATCATCGTTTTAGATAGGA 57.169 29.630 0.00 0.00 0.00 2.94
2341 3472 5.475273 TCGTCTGCTTGAATTTCATCATC 57.525 39.130 0.00 0.00 0.00 2.92
2357 3488 2.028930 ACTAGCTTCTGGGTTTCGTCTG 60.029 50.000 0.00 0.00 0.00 3.51
2401 3532 9.732130 GCAATCTATTTCTACCCTTCTATCAAT 57.268 33.333 0.00 0.00 0.00 2.57
2402 3533 8.713971 TGCAATCTATTTCTACCCTTCTATCAA 58.286 33.333 0.00 0.00 0.00 2.57
2403 3534 8.262601 TGCAATCTATTTCTACCCTTCTATCA 57.737 34.615 0.00 0.00 0.00 2.15
2404 3535 9.213799 CTTGCAATCTATTTCTACCCTTCTATC 57.786 37.037 0.00 0.00 0.00 2.08
2405 3536 8.938883 TCTTGCAATCTATTTCTACCCTTCTAT 58.061 33.333 0.00 0.00 0.00 1.98
2406 3537 8.319057 TCTTGCAATCTATTTCTACCCTTCTA 57.681 34.615 0.00 0.00 0.00 2.10
2407 3538 7.200434 TCTTGCAATCTATTTCTACCCTTCT 57.800 36.000 0.00 0.00 0.00 2.85
2408 3539 7.936301 AGATCTTGCAATCTATTTCTACCCTTC 59.064 37.037 0.00 0.00 34.21 3.46
2409 3540 7.810260 AGATCTTGCAATCTATTTCTACCCTT 58.190 34.615 0.00 0.00 34.21 3.95
2410 3541 7.292120 AGAGATCTTGCAATCTATTTCTACCCT 59.708 37.037 0.00 0.00 36.13 4.34
2411 3542 7.387397 CAGAGATCTTGCAATCTATTTCTACCC 59.613 40.741 0.00 0.00 36.13 3.69
2412 3543 8.147058 TCAGAGATCTTGCAATCTATTTCTACC 58.853 37.037 0.00 0.00 36.13 3.18
2413 3544 8.977505 GTCAGAGATCTTGCAATCTATTTCTAC 58.022 37.037 0.00 1.86 36.13 2.59
2414 3545 8.922237 AGTCAGAGATCTTGCAATCTATTTCTA 58.078 33.333 0.00 0.00 36.13 2.10
2415 3546 7.794041 AGTCAGAGATCTTGCAATCTATTTCT 58.206 34.615 0.00 1.96 36.13 2.52
2416 3547 7.096106 CGAGTCAGAGATCTTGCAATCTATTTC 60.096 40.741 0.00 0.00 36.13 2.17
2417 3548 6.700960 CGAGTCAGAGATCTTGCAATCTATTT 59.299 38.462 0.00 0.00 36.13 1.40
2418 3549 6.040278 TCGAGTCAGAGATCTTGCAATCTATT 59.960 38.462 0.00 0.00 36.13 1.73
2419 3550 5.534278 TCGAGTCAGAGATCTTGCAATCTAT 59.466 40.000 0.00 0.00 36.13 1.98
2420 3551 4.884164 TCGAGTCAGAGATCTTGCAATCTA 59.116 41.667 0.00 0.00 36.13 1.98
2421 3552 3.698539 TCGAGTCAGAGATCTTGCAATCT 59.301 43.478 0.00 0.00 38.72 2.40
2422 3553 4.039151 TCGAGTCAGAGATCTTGCAATC 57.961 45.455 0.00 0.00 0.00 2.67
2423 3554 4.462508 TTCGAGTCAGAGATCTTGCAAT 57.537 40.909 0.00 0.00 0.00 3.56
2424 3555 3.942130 TTCGAGTCAGAGATCTTGCAA 57.058 42.857 0.00 0.00 0.00 4.08
2425 3556 3.579709 GTTTCGAGTCAGAGATCTTGCA 58.420 45.455 0.00 0.00 0.00 4.08
2426 3557 2.926838 GGTTTCGAGTCAGAGATCTTGC 59.073 50.000 0.00 0.00 0.00 4.01
2427 3558 4.179926 TGGTTTCGAGTCAGAGATCTTG 57.820 45.455 0.00 0.00 0.00 3.02
2428 3559 4.873746 TTGGTTTCGAGTCAGAGATCTT 57.126 40.909 0.00 0.00 0.00 2.40
2429 3560 6.723298 ATATTGGTTTCGAGTCAGAGATCT 57.277 37.500 0.00 0.00 0.00 2.75
2438 3569 9.635520 CGGAGTTTATATATATTGGTTTCGAGT 57.364 33.333 0.00 0.00 0.00 4.18
2439 3570 9.850628 TCGGAGTTTATATATATTGGTTTCGAG 57.149 33.333 0.00 0.00 0.00 4.04
2445 3576 8.258708 GCCTCTTCGGAGTTTATATATATTGGT 58.741 37.037 0.00 0.00 40.29 3.67
2446 3577 8.258007 TGCCTCTTCGGAGTTTATATATATTGG 58.742 37.037 0.00 0.00 40.29 3.16
2447 3578 9.088512 GTGCCTCTTCGGAGTTTATATATATTG 57.911 37.037 0.00 0.00 40.29 1.90
2448 3579 8.258708 GGTGCCTCTTCGGAGTTTATATATATT 58.741 37.037 0.00 0.00 40.29 1.28
2449 3580 7.399191 TGGTGCCTCTTCGGAGTTTATATATAT 59.601 37.037 0.00 0.00 40.29 0.86
2450 3581 6.722590 TGGTGCCTCTTCGGAGTTTATATATA 59.277 38.462 0.00 0.00 40.29 0.86
2451 3582 5.542635 TGGTGCCTCTTCGGAGTTTATATAT 59.457 40.000 0.00 0.00 40.29 0.86
2452 3583 4.897076 TGGTGCCTCTTCGGAGTTTATATA 59.103 41.667 0.00 0.00 40.29 0.86
2453 3584 3.709653 TGGTGCCTCTTCGGAGTTTATAT 59.290 43.478 0.00 0.00 40.29 0.86
2454 3585 3.101437 TGGTGCCTCTTCGGAGTTTATA 58.899 45.455 0.00 0.00 40.29 0.98
2455 3586 1.906574 TGGTGCCTCTTCGGAGTTTAT 59.093 47.619 0.00 0.00 40.29 1.40
2456 3587 1.344065 TGGTGCCTCTTCGGAGTTTA 58.656 50.000 0.00 0.00 40.29 2.01
2457 3588 0.472471 TTGGTGCCTCTTCGGAGTTT 59.528 50.000 0.00 0.00 40.29 2.66
2458 3589 0.035458 CTTGGTGCCTCTTCGGAGTT 59.965 55.000 0.00 0.00 40.29 3.01
2459 3590 1.674057 CTTGGTGCCTCTTCGGAGT 59.326 57.895 0.00 0.00 40.29 3.85
2460 3591 1.078848 CCTTGGTGCCTCTTCGGAG 60.079 63.158 0.00 0.00 41.50 4.63
2461 3592 1.415672 AACCTTGGTGCCTCTTCGGA 61.416 55.000 0.00 0.00 33.16 4.55
2462 3593 0.537371 AAACCTTGGTGCCTCTTCGG 60.537 55.000 0.00 0.00 0.00 4.30
2624 3755 4.080526 GGTTCAGTATGTGGACCTATGGTT 60.081 45.833 0.86 0.00 34.24 3.67
2625 3756 3.454812 GGTTCAGTATGTGGACCTATGGT 59.545 47.826 0.86 0.00 36.32 3.55
2632 3763 2.017049 GCCATGGTTCAGTATGTGGAC 58.983 52.381 14.67 0.00 37.40 4.02
2735 3866 0.179145 CTACGCGATGGTTCCTCGTT 60.179 55.000 15.93 0.00 38.37 3.85
2751 3882 0.103937 AGCTTGCGCCTCTCATCTAC 59.896 55.000 4.18 0.00 36.60 2.59
2801 3932 0.809385 GGACGATCTTGTCTGGACGA 59.191 55.000 0.00 0.00 38.91 4.20
2803 3934 2.166459 TGATGGACGATCTTGTCTGGAC 59.834 50.000 0.00 0.00 38.91 4.02
2984 4115 0.465642 GAAAATCCCTAGGCCGGTGG 60.466 60.000 2.05 0.17 0.00 4.61
2987 4118 2.637872 TGATAGAAAATCCCTAGGCCGG 59.362 50.000 2.05 0.00 0.00 6.13
2988 4119 4.559862 ATGATAGAAAATCCCTAGGCCG 57.440 45.455 2.05 0.00 0.00 6.13
2989 4120 5.190726 AGCTATGATAGAAAATCCCTAGGCC 59.809 44.000 2.05 0.00 0.00 5.19
2990 4121 6.306643 AGCTATGATAGAAAATCCCTAGGC 57.693 41.667 2.05 0.00 0.00 3.93
2991 4122 6.597280 GCAAGCTATGATAGAAAATCCCTAGG 59.403 42.308 3.13 0.06 0.00 3.02
2992 4123 7.393216 AGCAAGCTATGATAGAAAATCCCTAG 58.607 38.462 3.13 0.00 0.00 3.02
2993 4124 7.236432 AGAGCAAGCTATGATAGAAAATCCCTA 59.764 37.037 3.13 0.00 0.00 3.53
2994 4125 6.044171 AGAGCAAGCTATGATAGAAAATCCCT 59.956 38.462 3.13 0.00 0.00 4.20
2995 4126 6.237154 AGAGCAAGCTATGATAGAAAATCCC 58.763 40.000 3.13 0.00 0.00 3.85
2996 4127 8.310382 TCTAGAGCAAGCTATGATAGAAAATCC 58.690 37.037 3.13 0.00 0.00 3.01
2997 4128 9.703892 TTCTAGAGCAAGCTATGATAGAAAATC 57.296 33.333 3.13 0.00 32.15 2.17
3002 4133 8.465999 GCTATTTCTAGAGCAAGCTATGATAGA 58.534 37.037 3.13 1.42 38.49 1.98
3003 4134 8.469200 AGCTATTTCTAGAGCAAGCTATGATAG 58.531 37.037 18.09 0.00 41.08 2.08
3004 4135 8.359875 AGCTATTTCTAGAGCAAGCTATGATA 57.640 34.615 18.09 0.00 41.08 2.15
3005 4136 7.243604 AGCTATTTCTAGAGCAAGCTATGAT 57.756 36.000 18.09 0.00 41.08 2.45
3006 4137 6.662865 AGCTATTTCTAGAGCAAGCTATGA 57.337 37.500 18.09 0.00 41.08 2.15
3009 4140 7.667635 TCTCATAGCTATTTCTAGAGCAAGCTA 59.332 37.037 23.27 23.27 44.18 3.32
3010 4141 6.493115 TCTCATAGCTATTTCTAGAGCAAGCT 59.507 38.462 21.33 21.33 41.08 3.74
3011 4142 6.686630 TCTCATAGCTATTTCTAGAGCAAGC 58.313 40.000 2.64 12.09 41.08 4.01
3012 4143 7.598493 GGTTCTCATAGCTATTTCTAGAGCAAG 59.402 40.741 2.64 0.00 41.08 4.01
3013 4144 7.437748 GGTTCTCATAGCTATTTCTAGAGCAA 58.562 38.462 2.64 2.19 41.08 3.91
3014 4145 6.294231 CGGTTCTCATAGCTATTTCTAGAGCA 60.294 42.308 2.64 0.00 41.08 4.26
3015 4146 6.090129 CGGTTCTCATAGCTATTTCTAGAGC 58.910 44.000 2.64 6.92 38.91 4.09
3016 4147 7.209471 ACGGTTCTCATAGCTATTTCTAGAG 57.791 40.000 2.64 7.53 0.00 2.43
3017 4148 7.426410 CAACGGTTCTCATAGCTATTTCTAGA 58.574 38.462 2.64 2.41 0.00 2.43
3018 4149 6.642950 CCAACGGTTCTCATAGCTATTTCTAG 59.357 42.308 2.64 0.00 0.00 2.43
3019 4150 6.097839 ACCAACGGTTCTCATAGCTATTTCTA 59.902 38.462 2.64 0.00 27.29 2.10
3020 4151 5.104900 ACCAACGGTTCTCATAGCTATTTCT 60.105 40.000 2.64 0.00 27.29 2.52
3021 4152 5.006746 CACCAACGGTTCTCATAGCTATTTC 59.993 44.000 2.64 0.00 31.02 2.17
3022 4153 4.876107 CACCAACGGTTCTCATAGCTATTT 59.124 41.667 2.64 0.00 31.02 1.40
3023 4154 4.081087 ACACCAACGGTTCTCATAGCTATT 60.081 41.667 2.64 0.00 31.02 1.73
3024 4155 3.451178 ACACCAACGGTTCTCATAGCTAT 59.549 43.478 0.00 0.00 31.02 2.97
3025 4156 2.829720 ACACCAACGGTTCTCATAGCTA 59.170 45.455 0.00 0.00 31.02 3.32
3026 4157 1.623811 ACACCAACGGTTCTCATAGCT 59.376 47.619 0.00 0.00 31.02 3.32
3027 4158 2.094762 ACACCAACGGTTCTCATAGC 57.905 50.000 0.00 0.00 31.02 2.97
3028 4159 2.159627 GCAACACCAACGGTTCTCATAG 59.840 50.000 0.00 0.00 31.02 2.23
3029 4160 2.147958 GCAACACCAACGGTTCTCATA 58.852 47.619 0.00 0.00 31.02 2.15
3030 4161 0.951558 GCAACACCAACGGTTCTCAT 59.048 50.000 0.00 0.00 31.02 2.90
3031 4162 1.098712 GGCAACACCAACGGTTCTCA 61.099 55.000 0.00 0.00 38.86 3.27
3032 4163 0.818040 AGGCAACACCAACGGTTCTC 60.818 55.000 0.00 0.00 43.14 2.87
3033 4164 0.818040 GAGGCAACACCAACGGTTCT 60.818 55.000 0.00 0.00 43.14 3.01
3034 4165 1.652563 GAGGCAACACCAACGGTTC 59.347 57.895 0.00 0.00 43.14 3.62
3035 4166 2.184167 CGAGGCAACACCAACGGTT 61.184 57.895 0.00 0.00 43.14 4.44
3036 4167 2.590575 CGAGGCAACACCAACGGT 60.591 61.111 0.00 0.00 43.14 4.83
3037 4168 2.590575 ACGAGGCAACACCAACGG 60.591 61.111 0.00 0.00 43.14 4.44
3038 4169 1.227999 ATCACGAGGCAACACCAACG 61.228 55.000 0.00 0.00 43.14 4.10
3039 4170 0.951558 AATCACGAGGCAACACCAAC 59.048 50.000 0.00 0.00 43.14 3.77
3040 4171 1.234821 GAATCACGAGGCAACACCAA 58.765 50.000 0.00 0.00 43.14 3.67
3041 4172 0.948623 CGAATCACGAGGCAACACCA 60.949 55.000 0.00 0.00 45.77 4.17
3042 4173 0.669318 TCGAATCACGAGGCAACACC 60.669 55.000 0.00 0.00 46.45 4.16
3043 4174 2.822306 TCGAATCACGAGGCAACAC 58.178 52.632 0.00 0.00 46.45 3.32
3052 4183 1.418373 TGCACTCAGTTCGAATCACG 58.582 50.000 0.00 0.00 44.09 4.35
3053 4184 2.094894 CCATGCACTCAGTTCGAATCAC 59.905 50.000 0.00 0.00 0.00 3.06
3054 4185 2.289631 ACCATGCACTCAGTTCGAATCA 60.290 45.455 0.00 0.00 0.00 2.57
3055 4186 2.349886 GACCATGCACTCAGTTCGAATC 59.650 50.000 0.00 0.00 0.00 2.52
3056 4187 2.350522 GACCATGCACTCAGTTCGAAT 58.649 47.619 0.00 0.00 0.00 3.34
3057 4188 1.608025 GGACCATGCACTCAGTTCGAA 60.608 52.381 0.00 0.00 0.00 3.71
3058 4189 0.037326 GGACCATGCACTCAGTTCGA 60.037 55.000 0.00 0.00 0.00 3.71
3059 4190 0.036952 AGGACCATGCACTCAGTTCG 60.037 55.000 0.00 0.00 0.00 3.95
3060 4191 3.550437 ATAGGACCATGCACTCAGTTC 57.450 47.619 0.00 0.00 0.00 3.01
3061 4192 3.521126 AGAATAGGACCATGCACTCAGTT 59.479 43.478 0.00 0.00 0.00 3.16
3062 4193 3.110705 AGAATAGGACCATGCACTCAGT 58.889 45.455 0.00 0.00 0.00 3.41
3063 4194 3.834489 AGAATAGGACCATGCACTCAG 57.166 47.619 0.00 0.00 0.00 3.35
3064 4195 7.559335 AATATAGAATAGGACCATGCACTCA 57.441 36.000 0.00 0.00 0.00 3.41
3065 4196 8.725148 CAAAATATAGAATAGGACCATGCACTC 58.275 37.037 0.00 0.00 0.00 3.51
3066 4197 7.175641 GCAAAATATAGAATAGGACCATGCACT 59.824 37.037 0.00 0.00 0.00 4.40
3067 4198 7.308435 GCAAAATATAGAATAGGACCATGCAC 58.692 38.462 0.00 0.00 0.00 4.57
3068 4199 6.434028 GGCAAAATATAGAATAGGACCATGCA 59.566 38.462 0.00 0.00 0.00 3.96
3069 4200 6.127619 GGGCAAAATATAGAATAGGACCATGC 60.128 42.308 0.00 0.00 0.00 4.06
3070 4201 6.947733 TGGGCAAAATATAGAATAGGACCATG 59.052 38.462 0.00 0.00 0.00 3.66
3071 4202 7.102518 TGGGCAAAATATAGAATAGGACCAT 57.897 36.000 0.00 0.00 0.00 3.55
3072 4203 6.523035 TGGGCAAAATATAGAATAGGACCA 57.477 37.500 0.00 0.00 0.00 4.02
3073 4204 8.306761 CAAATGGGCAAAATATAGAATAGGACC 58.693 37.037 0.00 0.00 0.00 4.46
3074 4205 9.077885 TCAAATGGGCAAAATATAGAATAGGAC 57.922 33.333 0.00 0.00 0.00 3.85
3075 4206 9.827198 ATCAAATGGGCAAAATATAGAATAGGA 57.173 29.630 0.00 0.00 0.00 2.94
3076 4207 9.865321 CATCAAATGGGCAAAATATAGAATAGG 57.135 33.333 0.00 0.00 0.00 2.57
3085 4216 9.339850 CCAATAATTCATCAAATGGGCAAAATA 57.660 29.630 0.00 0.00 0.00 1.40
3086 4217 8.053963 TCCAATAATTCATCAAATGGGCAAAAT 58.946 29.630 0.00 0.00 0.00 1.82
3087 4218 7.400439 TCCAATAATTCATCAAATGGGCAAAA 58.600 30.769 0.00 0.00 0.00 2.44
3088 4219 6.955364 TCCAATAATTCATCAAATGGGCAAA 58.045 32.000 0.00 0.00 0.00 3.68
3089 4220 6.408320 CCTCCAATAATTCATCAAATGGGCAA 60.408 38.462 0.00 0.00 0.00 4.52
3090 4221 5.070714 CCTCCAATAATTCATCAAATGGGCA 59.929 40.000 0.00 0.00 0.00 5.36
3091 4222 5.070847 ACCTCCAATAATTCATCAAATGGGC 59.929 40.000 0.00 0.00 0.00 5.36
3092 4223 6.463331 CCACCTCCAATAATTCATCAAATGGG 60.463 42.308 0.00 0.00 0.00 4.00
3093 4224 6.463331 CCCACCTCCAATAATTCATCAAATGG 60.463 42.308 0.00 0.00 0.00 3.16
3094 4225 6.463331 CCCCACCTCCAATAATTCATCAAATG 60.463 42.308 0.00 0.00 0.00 2.32
3095 4226 5.603813 CCCCACCTCCAATAATTCATCAAAT 59.396 40.000 0.00 0.00 0.00 2.32
3096 4227 4.961730 CCCCACCTCCAATAATTCATCAAA 59.038 41.667 0.00 0.00 0.00 2.69
3097 4228 4.016666 ACCCCACCTCCAATAATTCATCAA 60.017 41.667 0.00 0.00 0.00 2.57
3098 4229 3.531397 ACCCCACCTCCAATAATTCATCA 59.469 43.478 0.00 0.00 0.00 3.07
3099 4230 3.891366 CACCCCACCTCCAATAATTCATC 59.109 47.826 0.00 0.00 0.00 2.92
3100 4231 3.374098 CCACCCCACCTCCAATAATTCAT 60.374 47.826 0.00 0.00 0.00 2.57
3101 4232 2.024464 CCACCCCACCTCCAATAATTCA 60.024 50.000 0.00 0.00 0.00 2.57
3102 4233 2.666317 CCACCCCACCTCCAATAATTC 58.334 52.381 0.00 0.00 0.00 2.17
3103 4234 1.342975 GCCACCCCACCTCCAATAATT 60.343 52.381 0.00 0.00 0.00 1.40
3104 4235 0.261696 GCCACCCCACCTCCAATAAT 59.738 55.000 0.00 0.00 0.00 1.28
3105 4236 1.143329 TGCCACCCCACCTCCAATAA 61.143 55.000 0.00 0.00 0.00 1.40
3106 4237 1.542628 TGCCACCCCACCTCCAATA 60.543 57.895 0.00 0.00 0.00 1.90
3107 4238 2.863484 TGCCACCCCACCTCCAAT 60.863 61.111 0.00 0.00 0.00 3.16
3108 4239 3.579302 CTGCCACCCCACCTCCAA 61.579 66.667 0.00 0.00 0.00 3.53
3120 4251 1.374947 GTCAGTACTTGGCCTGCCA 59.625 57.895 6.80 6.80 45.63 4.92
3121 4252 4.303257 GTCAGTACTTGGCCTGCC 57.697 61.111 3.32 0.00 0.00 4.85
3126 4257 2.000447 CTAAAGCGGTCAGTACTTGGC 59.000 52.381 0.00 0.00 0.00 4.52
3127 4258 3.251571 GTCTAAAGCGGTCAGTACTTGG 58.748 50.000 0.00 0.00 0.00 3.61
3128 4259 3.056749 AGGTCTAAAGCGGTCAGTACTTG 60.057 47.826 0.00 0.00 0.00 3.16
3129 4260 3.163467 AGGTCTAAAGCGGTCAGTACTT 58.837 45.455 0.00 0.00 0.00 2.24
3130 4261 2.754002 GAGGTCTAAAGCGGTCAGTACT 59.246 50.000 0.00 0.00 0.00 2.73
3131 4262 2.754002 AGAGGTCTAAAGCGGTCAGTAC 59.246 50.000 0.00 0.00 0.00 2.73
3132 4263 3.083122 AGAGGTCTAAAGCGGTCAGTA 57.917 47.619 0.00 0.00 0.00 2.74
3133 4264 1.926108 AGAGGTCTAAAGCGGTCAGT 58.074 50.000 0.00 0.00 0.00 3.41
3134 4265 2.417515 GGAAGAGGTCTAAAGCGGTCAG 60.418 54.545 0.00 0.00 0.00 3.51
3135 4266 1.549170 GGAAGAGGTCTAAAGCGGTCA 59.451 52.381 0.00 0.00 0.00 4.02
3136 4267 1.549170 TGGAAGAGGTCTAAAGCGGTC 59.451 52.381 0.00 0.00 0.00 4.79
3137 4268 1.640917 TGGAAGAGGTCTAAAGCGGT 58.359 50.000 0.00 0.00 0.00 5.68
3138 4269 2.762535 TTGGAAGAGGTCTAAAGCGG 57.237 50.000 0.00 0.00 0.00 5.52
3139 4270 2.352960 GCATTGGAAGAGGTCTAAAGCG 59.647 50.000 0.00 0.00 32.78 4.68
3140 4271 3.347216 TGCATTGGAAGAGGTCTAAAGC 58.653 45.455 0.00 0.00 40.62 3.51
3141 4272 5.649395 TCAATGCATTGGAAGAGGTCTAAAG 59.351 40.000 33.22 7.62 38.30 1.85
3142 4273 5.569355 TCAATGCATTGGAAGAGGTCTAAA 58.431 37.500 33.22 11.34 38.30 1.85
3143 4274 5.178096 TCAATGCATTGGAAGAGGTCTAA 57.822 39.130 33.22 11.52 38.30 2.10
3144 4275 4.842531 TCAATGCATTGGAAGAGGTCTA 57.157 40.909 33.22 12.01 38.30 2.59
3145 4276 3.726557 TCAATGCATTGGAAGAGGTCT 57.273 42.857 33.22 0.00 38.30 3.85
3146 4277 4.303086 CATCAATGCATTGGAAGAGGTC 57.697 45.455 33.22 0.00 38.30 3.85
3160 4291 3.133362 AGCACCCCATTTTAGCATCAATG 59.867 43.478 0.00 0.00 0.00 2.82
3161 4292 3.377573 AGCACCCCATTTTAGCATCAAT 58.622 40.909 0.00 0.00 0.00 2.57
3162 4293 2.818921 AGCACCCCATTTTAGCATCAA 58.181 42.857 0.00 0.00 0.00 2.57
3163 4294 2.530460 AGCACCCCATTTTAGCATCA 57.470 45.000 0.00 0.00 0.00 3.07
3164 4295 3.954258 ACTTAGCACCCCATTTTAGCATC 59.046 43.478 0.00 0.00 0.00 3.91
3165 4296 3.701040 CACTTAGCACCCCATTTTAGCAT 59.299 43.478 0.00 0.00 0.00 3.79
3166 4297 3.088532 CACTTAGCACCCCATTTTAGCA 58.911 45.455 0.00 0.00 0.00 3.49
3167 4298 2.159240 GCACTTAGCACCCCATTTTAGC 60.159 50.000 0.00 0.00 44.79 3.09
3168 4299 3.782889 GCACTTAGCACCCCATTTTAG 57.217 47.619 0.00 0.00 44.79 1.85
3188 4319 9.023967 GGACATTAGTTGCTAAGCATTTTAATG 57.976 33.333 5.30 5.30 39.46 1.90
3189 4320 8.197439 GGGACATTAGTTGCTAAGCATTTTAAT 58.803 33.333 0.00 0.00 38.76 1.40
3190 4321 7.363443 GGGGACATTAGTTGCTAAGCATTTTAA 60.363 37.037 0.00 0.00 38.76 1.52
3191 4322 6.096282 GGGGACATTAGTTGCTAAGCATTTTA 59.904 38.462 0.00 0.00 38.76 1.52
3192 4323 5.105351 GGGGACATTAGTTGCTAAGCATTTT 60.105 40.000 0.00 0.00 38.76 1.82
3193 4324 4.402474 GGGGACATTAGTTGCTAAGCATTT 59.598 41.667 0.00 0.00 38.76 2.32
3194 4325 3.954258 GGGGACATTAGTTGCTAAGCATT 59.046 43.478 0.00 0.00 38.76 3.56
3195 4326 3.053693 TGGGGACATTAGTTGCTAAGCAT 60.054 43.478 0.00 0.00 34.55 3.79
3196 4327 2.307392 TGGGGACATTAGTTGCTAAGCA 59.693 45.455 0.00 0.00 32.94 3.91
3197 4328 2.999331 TGGGGACATTAGTTGCTAAGC 58.001 47.619 0.00 0.00 33.40 3.09
3198 4329 4.202050 GCATTGGGGACATTAGTTGCTAAG 60.202 45.833 0.00 0.00 42.32 2.18
3199 4330 3.699038 GCATTGGGGACATTAGTTGCTAA 59.301 43.478 0.00 0.00 42.32 3.09
3200 4331 3.287222 GCATTGGGGACATTAGTTGCTA 58.713 45.455 0.00 0.00 42.32 3.49
3201 4332 2.102578 GCATTGGGGACATTAGTTGCT 58.897 47.619 0.00 0.00 42.32 3.91
3202 4333 1.824230 TGCATTGGGGACATTAGTTGC 59.176 47.619 0.00 0.00 42.32 4.17
3203 4334 4.435425 CAATGCATTGGGGACATTAGTTG 58.565 43.478 28.34 2.10 42.32 3.16
3204 4335 4.741321 CAATGCATTGGGGACATTAGTT 57.259 40.909 28.34 0.00 42.32 2.24
3221 4352 4.218417 AGCTACAAAACCTAAGCACCAATG 59.782 41.667 0.00 0.00 37.44 2.82
3222 4353 4.407365 AGCTACAAAACCTAAGCACCAAT 58.593 39.130 0.00 0.00 37.44 3.16
3223 4354 3.827722 AGCTACAAAACCTAAGCACCAA 58.172 40.909 0.00 0.00 37.44 3.67
3224 4355 3.502123 AGCTACAAAACCTAAGCACCA 57.498 42.857 0.00 0.00 37.44 4.17
3225 4356 5.547181 CTTAGCTACAAAACCTAAGCACC 57.453 43.478 0.00 0.00 37.44 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.