Multiple sequence alignment - TraesCS1B01G117700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G117700 chr1B 100.000 3095 0 0 1 3095 137612506 137615600 0.000000e+00 5716.0
1 TraesCS1B01G117700 chr1B 91.812 1722 87 29 763 2448 137182446 137180743 0.000000e+00 2350.0
2 TraesCS1B01G117700 chr1B 96.226 1378 36 10 803 2180 137450880 137449519 0.000000e+00 2242.0
3 TraesCS1B01G117700 chr1B 85.253 217 15 8 569 775 137190288 137190079 1.120000e-49 207.0
4 TraesCS1B01G117700 chr1B 93.636 110 7 0 2164 2273 137614638 137614747 6.870000e-37 165.0
5 TraesCS1B01G117700 chr1B 93.636 110 7 0 2133 2242 137614669 137614778 6.870000e-37 165.0
6 TraesCS1B01G117700 chr1B 88.750 80 6 3 2515 2592 137556426 137556504 9.140000e-16 95.3
7 TraesCS1B01G117700 chr1D 91.091 2054 113 28 411 2448 84616156 84614157 0.000000e+00 2715.0
8 TraesCS1B01G117700 chr1D 93.304 1568 76 10 677 2242 84891381 84892921 0.000000e+00 2287.0
9 TraesCS1B01G117700 chr1D 90.828 1450 90 24 762 2193 84728767 84727343 0.000000e+00 1901.0
10 TraesCS1B01G117700 chr1D 91.437 654 40 9 6 646 84889866 84890516 0.000000e+00 883.0
11 TraesCS1B01G117700 chr1D 94.386 285 16 0 2164 2448 84892812 84893096 3.660000e-119 438.0
12 TraesCS1B01G117700 chr1D 85.301 415 40 10 1 406 84775812 84775410 2.870000e-110 409.0
13 TraesCS1B01G117700 chr1D 88.889 261 28 1 2803 3062 280042506 280042766 1.380000e-83 320.0
14 TraesCS1B01G117700 chr1D 87.452 263 30 3 2803 3063 477229272 477229011 1.800000e-77 300.0
15 TraesCS1B01G117700 chr1D 87.347 245 24 4 411 654 84730155 84729917 1.090000e-69 274.0
16 TraesCS1B01G117700 chr1D 87.079 178 17 5 2273 2448 84726891 84726718 2.430000e-46 196.0
17 TraesCS1B01G117700 chr1D 95.312 64 2 1 2515 2577 84876329 84876392 1.960000e-17 100.0
18 TraesCS1B01G117700 chr1D 93.220 59 4 0 2166 2224 84727401 84727343 1.530000e-13 87.9
19 TraesCS1B01G117700 chr1D 95.833 48 2 0 2133 2180 84614379 84614332 9.200000e-11 78.7
20 TraesCS1B01G117700 chr1A 88.791 1588 118 30 662 2211 78551505 78549940 0.000000e+00 1892.0
21 TraesCS1B01G117700 chr1A 89.722 1401 74 24 548 1938 79110109 79111449 0.000000e+00 1725.0
22 TraesCS1B01G117700 chr1A 91.703 687 37 12 1508 2193 78958402 78957735 0.000000e+00 935.0
23 TraesCS1B01G117700 chr1A 90.459 566 42 7 5 561 79109099 79109661 0.000000e+00 736.0
24 TraesCS1B01G117700 chr1A 88.189 508 20 5 1943 2445 79116295 79116767 1.250000e-158 569.0
25 TraesCS1B01G117700 chr1A 88.679 371 27 1 2498 2853 79117007 79117377 3.660000e-119 438.0
26 TraesCS1B01G117700 chr1A 88.095 252 20 5 411 660 78557049 78556806 1.090000e-74 291.0
27 TraesCS1B01G117700 chr1A 86.188 181 17 3 2273 2448 78957285 78957108 4.070000e-44 189.0
28 TraesCS1B01G117700 chr1A 93.220 59 4 0 2135 2193 78549773 78549715 1.530000e-13 87.9
29 TraesCS1B01G117700 chr1A 96.429 28 1 0 2215 2242 78549967 78549940 2.600000e-01 47.3
30 TraesCS1B01G117700 chr2D 86.877 762 77 13 1412 2166 470200971 470201716 0.000000e+00 832.0
31 TraesCS1B01G117700 chr2D 83.598 567 65 15 911 1477 470200444 470200982 9.900000e-140 507.0
32 TraesCS1B01G117700 chr2A 84.596 792 91 18 911 1701 611763820 611764581 0.000000e+00 758.0
33 TraesCS1B01G117700 chr3A 87.266 267 32 2 2799 3063 174949984 174950250 1.390000e-78 303.0
34 TraesCS1B01G117700 chr3B 86.905 252 31 2 2799 3048 225994835 225994584 6.530000e-72 281.0
35 TraesCS1B01G117700 chr5B 85.768 267 33 5 2799 3063 526551246 526551509 8.450000e-71 278.0
36 TraesCS1B01G117700 chr4D 85.448 268 35 4 2799 3063 297071003 297071269 3.040000e-70 276.0
37 TraesCS1B01G117700 chr5D 85.393 267 36 3 2799 3063 384883611 384883346 1.090000e-69 274.0
38 TraesCS1B01G117700 chr5D 84.674 261 36 4 2804 3063 9126427 9126684 1.100000e-64 257.0
39 TraesCS1B01G117700 chr4B 86.047 258 33 3 2799 3054 399783146 399782890 1.090000e-69 274.0
40 TraesCS1B01G117700 chr3D 85.965 57 7 1 154 209 399377578 399377522 3.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G117700 chr1B 137612506 137615600 3094 False 2015.333333 5716 95.757333 1 3095 3 chr1B.!!$F2 3094
1 TraesCS1B01G117700 chr1B 137180743 137182446 1703 True 2350.000000 2350 91.812000 763 2448 1 chr1B.!!$R1 1685
2 TraesCS1B01G117700 chr1B 137449519 137450880 1361 True 2242.000000 2242 96.226000 803 2180 1 chr1B.!!$R3 1377
3 TraesCS1B01G117700 chr1D 84614157 84616156 1999 True 1396.850000 2715 93.462000 411 2448 2 chr1D.!!$R3 2037
4 TraesCS1B01G117700 chr1D 84889866 84893096 3230 False 1202.666667 2287 93.042333 6 2448 3 chr1D.!!$F3 2442
5 TraesCS1B01G117700 chr1D 84726718 84730155 3437 True 614.725000 1901 89.618500 411 2448 4 chr1D.!!$R4 2037
6 TraesCS1B01G117700 chr1A 79109099 79111449 2350 False 1230.500000 1725 90.090500 5 1938 2 chr1A.!!$F1 1933
7 TraesCS1B01G117700 chr1A 78549715 78551505 1790 True 675.733333 1892 92.813333 662 2242 3 chr1A.!!$R2 1580
8 TraesCS1B01G117700 chr1A 78957108 78958402 1294 True 562.000000 935 88.945500 1508 2448 2 chr1A.!!$R3 940
9 TraesCS1B01G117700 chr1A 79116295 79117377 1082 False 503.500000 569 88.434000 1943 2853 2 chr1A.!!$F2 910
10 TraesCS1B01G117700 chr2D 470200444 470201716 1272 False 669.500000 832 85.237500 911 2166 2 chr2D.!!$F1 1255
11 TraesCS1B01G117700 chr2A 611763820 611764581 761 False 758.000000 758 84.596000 911 1701 1 chr2A.!!$F1 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 1.378382 TGATCCATGTTGGTGGCCG 60.378 57.895 0.0 0.0 39.03 6.13 F
1246 3225 1.196354 CCGAGACGACGTACAAGAACT 59.804 52.381 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 3428 4.840005 CGCTTCTTCCCCCGGAGC 62.84 72.222 0.73 0.0 31.21 4.70 R
2855 5690 0.030369 CGTGTCCGCATAGTAGTCCC 59.97 60.000 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.301868 AGATCTCCAGAATATTTCACTCTCC 57.698 40.000 0.00 0.00 0.00 3.71
49 50 7.344352 AGAATATTTCACTCTCCTTGTAGCTCT 59.656 37.037 0.00 0.00 0.00 4.09
69 70 1.378382 TGATCCATGTTGGTGGCCG 60.378 57.895 0.00 0.00 39.03 6.13
117 125 1.616865 GGTTGTCTTGGTTTTAGCCCC 59.383 52.381 0.00 0.00 0.00 5.80
118 126 2.594131 GTTGTCTTGGTTTTAGCCCCT 58.406 47.619 0.00 0.00 0.00 4.79
306 317 6.147328 AGTTGTTCTAGATGGTTAAACTTCGC 59.853 38.462 0.00 0.00 0.00 4.70
379 390 8.139350 TCCATAACTGATGTATTCGACGTATTT 58.861 33.333 0.00 0.00 33.19 1.40
437 450 4.523083 TGGATAATGTTGGCTAAGTGACC 58.477 43.478 0.00 0.00 0.00 4.02
512 526 4.116961 TCCCTAAATCTAAATCGCACACG 58.883 43.478 0.00 0.00 42.01 4.49
536 550 5.404968 GCATGAGATCTATTTGAAGAGTCCG 59.595 44.000 0.00 0.00 0.00 4.79
549 563 4.036262 TGAAGAGTCCGAAATTTGGTTGTG 59.964 41.667 0.00 0.00 0.00 3.33
556 570 7.942990 AGTCCGAAATTTGGTTGTGTAAAATA 58.057 30.769 0.00 0.00 0.00 1.40
603 1078 6.253512 GGTTGTGCAAAGTTGAGTTCTTTTAG 59.746 38.462 0.00 0.00 33.58 1.85
609 1084 6.638468 GCAAAGTTGAGTTCTTTTAGATGTGG 59.362 38.462 0.00 0.00 33.58 4.17
646 1121 3.772572 TCGGACTCCACCATATTTCTTGA 59.227 43.478 0.00 0.00 0.00 3.02
687 2566 3.117663 TCAAAAGTTAGTTGTGAGCCCCT 60.118 43.478 0.00 0.00 0.00 4.79
714 2598 3.997021 CACCGTCTATGAAAAGTGCTCTT 59.003 43.478 0.00 0.00 35.14 2.85
737 2621 2.931325 GCGTATGTACCGAAATGTTGGA 59.069 45.455 0.00 0.00 0.00 3.53
744 2628 9.316730 GTATGTACCGAAATGTTGGAGTATTAA 57.683 33.333 0.00 0.00 0.00 1.40
745 2629 8.974060 ATGTACCGAAATGTTGGAGTATTAAT 57.026 30.769 0.00 0.00 0.00 1.40
746 2630 8.795842 TGTACCGAAATGTTGGAGTATTAATT 57.204 30.769 0.00 0.00 0.00 1.40
750 2634 8.349983 ACCGAAATGTTGGAGTATTAATTATGC 58.650 33.333 0.00 0.00 0.00 3.14
751 2635 8.349245 CCGAAATGTTGGAGTATTAATTATGCA 58.651 33.333 0.00 0.00 0.00 3.96
846 2747 4.912766 CGGAGTCGATTGATTAGCTTCTAC 59.087 45.833 0.00 0.00 39.00 2.59
847 2748 5.278071 CGGAGTCGATTGATTAGCTTCTACT 60.278 44.000 0.00 0.00 39.00 2.57
848 2749 6.146898 GGAGTCGATTGATTAGCTTCTACTC 58.853 44.000 0.00 0.00 0.00 2.59
849 2750 6.079424 AGTCGATTGATTAGCTTCTACTCC 57.921 41.667 0.00 0.00 0.00 3.85
850 2751 5.830991 AGTCGATTGATTAGCTTCTACTCCT 59.169 40.000 0.00 0.00 0.00 3.69
1246 3225 1.196354 CCGAGACGACGTACAAGAACT 59.804 52.381 0.00 0.00 0.00 3.01
1446 3428 2.888863 GAGTCCGAGGAGGTGCTG 59.111 66.667 0.00 0.00 41.99 4.41
1447 3429 3.363844 GAGTCCGAGGAGGTGCTGC 62.364 68.421 0.00 0.00 41.99 5.25
1448 3430 3.386237 GTCCGAGGAGGTGCTGCT 61.386 66.667 0.00 0.00 41.99 4.24
2097 4139 5.220662 CCGCCTTGTTTGTCATAGTTGATAG 60.221 44.000 0.00 0.00 33.56 2.08
2098 4140 5.351465 CGCCTTGTTTGTCATAGTTGATAGT 59.649 40.000 0.00 0.00 33.56 2.12
2099 4141 6.533723 CGCCTTGTTTGTCATAGTTGATAGTA 59.466 38.462 0.00 0.00 33.56 1.82
2182 4294 8.942338 TGTAATGGTTGTAGTCAGTTATGATC 57.058 34.615 0.00 0.00 37.87 2.92
2193 4305 9.265901 GTAGTCAGTTATGATCAGCAATGTAAT 57.734 33.333 0.09 0.00 37.87 1.89
2194 4306 8.151141 AGTCAGTTATGATCAGCAATGTAATG 57.849 34.615 0.09 0.00 37.87 1.90
2195 4307 7.228108 AGTCAGTTATGATCAGCAATGTAATGG 59.772 37.037 0.09 0.00 37.87 3.16
2196 4308 7.012704 GTCAGTTATGATCAGCAATGTAATGGT 59.987 37.037 0.09 0.00 37.87 3.55
2197 4309 7.557358 TCAGTTATGATCAGCAATGTAATGGTT 59.443 33.333 0.09 0.00 0.00 3.67
2198 4310 7.646526 CAGTTATGATCAGCAATGTAATGGTTG 59.353 37.037 0.09 0.00 28.30 3.77
2199 4311 7.340232 AGTTATGATCAGCAATGTAATGGTTGT 59.660 33.333 0.09 0.00 29.52 3.32
2200 4312 8.620416 GTTATGATCAGCAATGTAATGGTTGTA 58.380 33.333 0.09 0.00 29.52 2.41
2201 4313 6.682423 TGATCAGCAATGTAATGGTTGTAG 57.318 37.500 0.00 0.00 29.52 2.74
2202 4314 6.179756 TGATCAGCAATGTAATGGTTGTAGT 58.820 36.000 0.00 0.00 29.52 2.73
2203 4315 6.316140 TGATCAGCAATGTAATGGTTGTAGTC 59.684 38.462 0.00 0.00 29.52 2.59
2204 4316 5.555966 TCAGCAATGTAATGGTTGTAGTCA 58.444 37.500 0.00 0.00 29.52 3.41
2205 4317 5.643348 TCAGCAATGTAATGGTTGTAGTCAG 59.357 40.000 0.00 0.00 29.52 3.51
2206 4318 5.412594 CAGCAATGTAATGGTTGTAGTCAGT 59.587 40.000 0.00 0.00 0.00 3.41
2207 4319 6.003950 AGCAATGTAATGGTTGTAGTCAGTT 58.996 36.000 0.00 0.00 0.00 3.16
2208 4320 7.119116 CAGCAATGTAATGGTTGTAGTCAGTTA 59.881 37.037 0.00 0.00 0.00 2.24
2209 4321 7.829211 AGCAATGTAATGGTTGTAGTCAGTTAT 59.171 33.333 0.00 0.00 0.00 1.89
2210 4322 7.910162 GCAATGTAATGGTTGTAGTCAGTTATG 59.090 37.037 0.00 0.00 0.00 1.90
2211 4323 9.161629 CAATGTAATGGTTGTAGTCAGTTATGA 57.838 33.333 0.00 0.00 0.00 2.15
2212 4324 9.905713 AATGTAATGGTTGTAGTCAGTTATGAT 57.094 29.630 0.00 0.00 37.87 2.45
2213 4325 8.942338 TGTAATGGTTGTAGTCAGTTATGATC 57.058 34.615 0.00 0.00 37.87 2.92
2214 4326 8.536175 TGTAATGGTTGTAGTCAGTTATGATCA 58.464 33.333 0.00 0.00 37.87 2.92
2215 4327 9.035607 GTAATGGTTGTAGTCAGTTATGATCAG 57.964 37.037 0.09 0.00 37.87 2.90
2216 4328 5.419542 TGGTTGTAGTCAGTTATGATCAGC 58.580 41.667 0.09 0.00 37.87 4.26
2217 4329 5.046663 TGGTTGTAGTCAGTTATGATCAGCA 60.047 40.000 0.09 0.00 37.87 4.41
2218 4330 5.874810 GGTTGTAGTCAGTTATGATCAGCAA 59.125 40.000 0.09 0.00 37.87 3.91
2219 4331 6.540189 GGTTGTAGTCAGTTATGATCAGCAAT 59.460 38.462 0.09 0.00 37.87 3.56
2220 4332 7.710907 GGTTGTAGTCAGTTATGATCAGCAATA 59.289 37.037 0.09 0.00 37.87 1.90
2221 4333 9.265901 GTTGTAGTCAGTTATGATCAGCAATAT 57.734 33.333 0.09 0.00 37.87 1.28
2226 4338 9.445878 AGTCAGTTATGATCAGCAATATAATGG 57.554 33.333 0.09 0.00 37.87 3.16
2227 4339 9.224267 GTCAGTTATGATCAGCAATATAATGGT 57.776 33.333 0.09 0.00 37.87 3.55
2228 4340 9.797642 TCAGTTATGATCAGCAATATAATGGTT 57.202 29.630 0.09 0.00 0.00 3.67
2229 4341 9.836076 CAGTTATGATCAGCAATATAATGGTTG 57.164 33.333 0.09 0.00 0.00 3.77
2279 4889 5.063204 GGTTGCAGTCACTTATGCCATATA 58.937 41.667 0.00 0.00 41.85 0.86
2385 4995 3.953242 GCAAGTTTTCGTGAATTTTTGCG 59.047 39.130 8.60 0.00 31.71 4.85
2419 5034 7.642586 GTGTAGATTTTGTGACAGTGTAAAACC 59.357 37.037 0.00 0.00 0.00 3.27
2430 5045 2.687935 AGTGTAAAACCAGGCACAACAG 59.312 45.455 0.00 0.00 34.59 3.16
2448 5063 3.995199 ACAGATCTTCAGCTTTCGACAA 58.005 40.909 0.00 0.00 0.00 3.18
2449 5064 3.993081 ACAGATCTTCAGCTTTCGACAAG 59.007 43.478 0.00 0.00 0.00 3.16
2450 5065 2.999355 AGATCTTCAGCTTTCGACAAGC 59.001 45.455 18.62 18.62 43.31 4.01
2451 5066 2.238942 TCTTCAGCTTTCGACAAGCA 57.761 45.000 24.35 10.04 45.30 3.91
2481 5301 8.557864 TGTCAATTGATTAAACCAAGCATTTTG 58.442 29.630 12.12 1.18 31.36 2.44
2482 5302 7.534918 GTCAATTGATTAAACCAAGCATTTTGC 59.465 33.333 12.12 0.00 45.46 3.68
2497 5317 5.894807 GCATTTTGCATAACAGTACATCCT 58.105 37.500 0.00 0.00 44.26 3.24
2499 5319 6.813152 GCATTTTGCATAACAGTACATCCTTT 59.187 34.615 0.00 0.00 44.26 3.11
2500 5320 7.331687 GCATTTTGCATAACAGTACATCCTTTT 59.668 33.333 0.00 0.00 44.26 2.27
2502 5322 6.509418 TTGCATAACAGTACATCCTTTTCC 57.491 37.500 0.00 0.00 0.00 3.13
2527 5347 3.906846 AGATATCCAAAGATTCGAGGCCT 59.093 43.478 3.86 3.86 33.67 5.19
2531 5351 2.012673 CCAAAGATTCGAGGCCTTCAG 58.987 52.381 6.77 1.41 0.00 3.02
2633 5453 9.547753 CCCTTATATTGATCTAAATATGGACCG 57.452 37.037 8.03 0.00 35.05 4.79
2640 5460 2.701951 TCTAAATATGGACCGTCCCACC 59.298 50.000 15.24 0.00 39.34 4.61
2687 5507 8.493607 TGAGACTTGGGTTCATCATATTCATAA 58.506 33.333 0.00 0.00 0.00 1.90
2733 5553 7.599245 AGCAACAAGATTTGTACTACTCACTAC 59.401 37.037 0.00 0.00 44.59 2.73
2737 5557 9.694137 ACAAGATTTGTACTACTCACTACTTTC 57.306 33.333 0.00 0.00 43.27 2.62
2743 5563 6.967135 TGTACTACTCACTACTTTCTGTGTG 58.033 40.000 0.00 0.00 35.82 3.82
2765 5600 6.166982 GTGTGCTAAAGTGAGAATACTTCCT 58.833 40.000 0.00 0.00 39.86 3.36
2770 5605 8.567948 TGCTAAAGTGAGAATACTTCCTTTTTG 58.432 33.333 0.00 0.00 39.86 2.44
2785 5620 6.036577 TCCTTTTTGTTTGGATTATGGAGC 57.963 37.500 0.00 0.00 0.00 4.70
2792 5627 3.492102 TTGGATTATGGAGCTAGTGGC 57.508 47.619 0.00 0.00 42.19 5.01
2801 5636 2.289565 GGAGCTAGTGGCCACATTTAC 58.710 52.381 36.39 22.71 43.05 2.01
2842 5677 1.602377 GTAAAAATCCTCCCGCATCCG 59.398 52.381 0.00 0.00 0.00 4.18
2853 5688 2.887568 GCATCCGTCCGCAGACAG 60.888 66.667 0.20 0.00 43.73 3.51
2854 5689 2.202797 CATCCGTCCGCAGACAGG 60.203 66.667 0.20 3.03 43.73 4.00
2855 5690 3.461773 ATCCGTCCGCAGACAGGG 61.462 66.667 0.20 0.00 43.73 4.45
2861 5696 2.363795 CCGCAGACAGGGGGACTA 60.364 66.667 0.00 0.00 46.16 2.59
2862 5697 2.722201 CCGCAGACAGGGGGACTAC 61.722 68.421 0.00 0.00 46.16 2.73
2863 5698 1.682684 CGCAGACAGGGGGACTACT 60.683 63.158 0.00 0.00 0.00 2.57
2864 5699 0.395311 CGCAGACAGGGGGACTACTA 60.395 60.000 0.00 0.00 0.00 1.82
2865 5700 1.754555 CGCAGACAGGGGGACTACTAT 60.755 57.143 0.00 0.00 0.00 2.12
2866 5701 1.689273 GCAGACAGGGGGACTACTATG 59.311 57.143 0.00 0.00 0.00 2.23
2867 5702 1.689273 CAGACAGGGGGACTACTATGC 59.311 57.143 0.00 0.00 0.00 3.14
2868 5703 0.674534 GACAGGGGGACTACTATGCG 59.325 60.000 0.00 0.00 0.00 4.73
2869 5704 0.759436 ACAGGGGGACTACTATGCGG 60.759 60.000 0.00 0.00 0.00 5.69
2870 5705 0.469331 CAGGGGGACTACTATGCGGA 60.469 60.000 0.00 0.00 0.00 5.54
2871 5706 0.469518 AGGGGGACTACTATGCGGAC 60.470 60.000 0.00 0.00 0.00 4.79
2872 5707 0.757935 GGGGGACTACTATGCGGACA 60.758 60.000 0.00 0.00 0.00 4.02
2873 5708 0.388294 GGGGACTACTATGCGGACAC 59.612 60.000 0.00 0.00 0.00 3.67
2874 5709 0.030369 GGGACTACTATGCGGACACG 59.970 60.000 0.00 0.00 44.63 4.49
2875 5710 0.030369 GGACTACTATGCGGACACGG 59.970 60.000 0.00 0.00 41.36 4.94
2876 5711 1.019673 GACTACTATGCGGACACGGA 58.980 55.000 0.00 0.00 46.81 4.69
2884 5719 4.873129 CGGACACGGATGCGGGAG 62.873 72.222 18.37 5.04 36.18 4.30
2885 5720 4.530857 GGACACGGATGCGGGAGG 62.531 72.222 18.37 1.75 0.00 4.30
2896 5731 4.113815 CGGGAGGCAGCCATCCAA 62.114 66.667 23.76 0.00 37.33 3.53
2897 5732 2.440980 GGGAGGCAGCCATCCAAC 60.441 66.667 23.76 9.94 37.33 3.77
2898 5733 2.825836 GGAGGCAGCCATCCAACG 60.826 66.667 15.80 0.00 35.54 4.10
2899 5734 2.045926 GAGGCAGCCATCCAACGT 60.046 61.111 15.80 0.00 0.00 3.99
2900 5735 1.220749 GAGGCAGCCATCCAACGTA 59.779 57.895 15.80 0.00 0.00 3.57
2901 5736 0.811616 GAGGCAGCCATCCAACGTAG 60.812 60.000 15.80 0.00 0.00 3.51
2903 5738 1.090052 GGCAGCCATCCAACGTAGTC 61.090 60.000 6.55 0.00 45.00 2.59
2904 5739 1.421410 GCAGCCATCCAACGTAGTCG 61.421 60.000 0.00 0.00 45.00 4.18
2905 5740 1.153628 AGCCATCCAACGTAGTCGC 60.154 57.895 0.00 0.00 45.00 5.19
2906 5741 1.447140 GCCATCCAACGTAGTCGCA 60.447 57.895 0.00 0.00 45.00 5.10
2907 5742 0.810031 GCCATCCAACGTAGTCGCAT 60.810 55.000 0.00 0.00 45.00 4.73
2908 5743 1.537348 GCCATCCAACGTAGTCGCATA 60.537 52.381 0.00 0.00 45.00 3.14
2909 5744 2.124903 CCATCCAACGTAGTCGCATAC 58.875 52.381 0.00 0.00 45.00 2.39
2910 5745 2.480587 CCATCCAACGTAGTCGCATACA 60.481 50.000 0.00 0.00 45.00 2.29
2911 5746 3.381045 CATCCAACGTAGTCGCATACAT 58.619 45.455 0.00 0.00 45.00 2.29
2912 5747 3.513680 TCCAACGTAGTCGCATACATT 57.486 42.857 0.00 0.00 45.00 2.71
2913 5748 3.852286 TCCAACGTAGTCGCATACATTT 58.148 40.909 0.00 0.00 45.00 2.32
2914 5749 4.247258 TCCAACGTAGTCGCATACATTTT 58.753 39.130 0.00 0.00 45.00 1.82
2915 5750 4.327898 TCCAACGTAGTCGCATACATTTTC 59.672 41.667 0.00 0.00 45.00 2.29
2916 5751 4.092237 CCAACGTAGTCGCATACATTTTCA 59.908 41.667 0.00 0.00 45.00 2.69
2917 5752 4.835199 ACGTAGTCGCATACATTTTCAC 57.165 40.909 0.00 0.00 29.74 3.18
2918 5753 4.239304 ACGTAGTCGCATACATTTTCACA 58.761 39.130 0.00 0.00 29.74 3.58
2919 5754 4.687018 ACGTAGTCGCATACATTTTCACAA 59.313 37.500 0.00 0.00 29.74 3.33
2920 5755 5.013236 CGTAGTCGCATACATTTTCACAAC 58.987 41.667 0.00 0.00 0.00 3.32
2921 5756 5.388994 CGTAGTCGCATACATTTTCACAACA 60.389 40.000 0.00 0.00 0.00 3.33
2922 5757 5.431420 AGTCGCATACATTTTCACAACAA 57.569 34.783 0.00 0.00 0.00 2.83
2923 5758 5.212194 AGTCGCATACATTTTCACAACAAC 58.788 37.500 0.00 0.00 0.00 3.32
2924 5759 5.008613 AGTCGCATACATTTTCACAACAACT 59.991 36.000 0.00 0.00 0.00 3.16
2925 5760 5.339611 GTCGCATACATTTTCACAACAACTC 59.660 40.000 0.00 0.00 0.00 3.01
2926 5761 4.318071 CGCATACATTTTCACAACAACTCG 59.682 41.667 0.00 0.00 0.00 4.18
2927 5762 5.448438 GCATACATTTTCACAACAACTCGA 58.552 37.500 0.00 0.00 0.00 4.04
2928 5763 5.912396 GCATACATTTTCACAACAACTCGAA 59.088 36.000 0.00 0.00 0.00 3.71
2929 5764 6.129457 GCATACATTTTCACAACAACTCGAAC 60.129 38.462 0.00 0.00 0.00 3.95
2930 5765 4.668289 ACATTTTCACAACAACTCGAACC 58.332 39.130 0.00 0.00 0.00 3.62
2931 5766 4.156922 ACATTTTCACAACAACTCGAACCA 59.843 37.500 0.00 0.00 0.00 3.67
2932 5767 4.768130 TTTTCACAACAACTCGAACCAA 57.232 36.364 0.00 0.00 0.00 3.67
2933 5768 3.750639 TTCACAACAACTCGAACCAAC 57.249 42.857 0.00 0.00 0.00 3.77
2934 5769 2.701107 TCACAACAACTCGAACCAACA 58.299 42.857 0.00 0.00 0.00 3.33
2935 5770 2.675844 TCACAACAACTCGAACCAACAG 59.324 45.455 0.00 0.00 0.00 3.16
2936 5771 2.675844 CACAACAACTCGAACCAACAGA 59.324 45.455 0.00 0.00 0.00 3.41
2937 5772 3.126171 CACAACAACTCGAACCAACAGAA 59.874 43.478 0.00 0.00 0.00 3.02
2938 5773 3.126343 ACAACAACTCGAACCAACAGAAC 59.874 43.478 0.00 0.00 0.00 3.01
2939 5774 1.931172 ACAACTCGAACCAACAGAACG 59.069 47.619 0.00 0.00 0.00 3.95
2940 5775 2.198406 CAACTCGAACCAACAGAACGA 58.802 47.619 0.00 0.00 0.00 3.85
2941 5776 2.589798 ACTCGAACCAACAGAACGAA 57.410 45.000 0.00 0.00 32.85 3.85
2942 5777 2.896168 ACTCGAACCAACAGAACGAAA 58.104 42.857 0.00 0.00 32.85 3.46
2943 5778 3.463944 ACTCGAACCAACAGAACGAAAT 58.536 40.909 0.00 0.00 32.85 2.17
2944 5779 3.875134 ACTCGAACCAACAGAACGAAATT 59.125 39.130 0.00 0.00 32.85 1.82
2945 5780 4.025145 ACTCGAACCAACAGAACGAAATTC 60.025 41.667 0.00 0.00 37.62 2.17
2946 5781 3.872182 TCGAACCAACAGAACGAAATTCA 59.128 39.130 0.00 0.00 40.09 2.57
2947 5782 4.513692 TCGAACCAACAGAACGAAATTCAT 59.486 37.500 0.00 0.00 40.09 2.57
2948 5783 5.008217 TCGAACCAACAGAACGAAATTCATT 59.992 36.000 0.00 0.00 40.09 2.57
2949 5784 5.339611 CGAACCAACAGAACGAAATTCATTC 59.660 40.000 0.00 0.00 40.09 2.67
2950 5785 5.766150 ACCAACAGAACGAAATTCATTCA 57.234 34.783 4.60 0.00 40.09 2.57
2951 5786 6.142818 ACCAACAGAACGAAATTCATTCAA 57.857 33.333 4.60 0.00 40.09 2.69
2952 5787 6.568869 ACCAACAGAACGAAATTCATTCAAA 58.431 32.000 4.60 0.00 40.09 2.69
2953 5788 6.475402 ACCAACAGAACGAAATTCATTCAAAC 59.525 34.615 4.60 0.00 40.09 2.93
2954 5789 6.475076 CCAACAGAACGAAATTCATTCAAACA 59.525 34.615 4.60 0.00 40.09 2.83
2955 5790 7.009999 CCAACAGAACGAAATTCATTCAAACAA 59.990 33.333 4.60 0.00 40.09 2.83
2956 5791 7.684062 ACAGAACGAAATTCATTCAAACAAG 57.316 32.000 4.60 0.00 40.09 3.16
2957 5792 7.257722 ACAGAACGAAATTCATTCAAACAAGT 58.742 30.769 4.60 0.00 40.09 3.16
2958 5793 7.432252 ACAGAACGAAATTCATTCAAACAAGTC 59.568 33.333 4.60 0.00 40.09 3.01
2959 5794 6.918022 AGAACGAAATTCATTCAAACAAGTCC 59.082 34.615 4.60 0.00 40.09 3.85
2960 5795 5.212194 ACGAAATTCATTCAAACAAGTCCG 58.788 37.500 0.00 0.00 37.96 4.79
2961 5796 5.008217 ACGAAATTCATTCAAACAAGTCCGA 59.992 36.000 0.00 0.00 37.96 4.55
2962 5797 5.912396 CGAAATTCATTCAAACAAGTCCGAA 59.088 36.000 0.00 0.00 37.96 4.30
2963 5798 6.416455 CGAAATTCATTCAAACAAGTCCGAAA 59.584 34.615 0.00 0.00 37.96 3.46
2964 5799 7.114811 CGAAATTCATTCAAACAAGTCCGAAAT 59.885 33.333 0.00 0.00 37.96 2.17
2965 5800 8.661352 AAATTCATTCAAACAAGTCCGAAATT 57.339 26.923 0.00 0.00 0.00 1.82
2966 5801 7.873739 ATTCATTCAAACAAGTCCGAAATTC 57.126 32.000 0.00 0.00 0.00 2.17
2967 5802 6.384258 TCATTCAAACAAGTCCGAAATTCA 57.616 33.333 0.00 0.00 0.00 2.57
2968 5803 6.980593 TCATTCAAACAAGTCCGAAATTCAT 58.019 32.000 0.00 0.00 0.00 2.57
2969 5804 8.105097 TCATTCAAACAAGTCCGAAATTCATA 57.895 30.769 0.00 0.00 0.00 2.15
2970 5805 8.739039 TCATTCAAACAAGTCCGAAATTCATAT 58.261 29.630 0.00 0.00 0.00 1.78
2974 5809 9.834628 TCAAACAAGTCCGAAATTCATATAAAC 57.165 29.630 0.00 0.00 0.00 2.01
2975 5810 9.619316 CAAACAAGTCCGAAATTCATATAAACA 57.381 29.630 0.00 0.00 0.00 2.83
2976 5811 9.620660 AAACAAGTCCGAAATTCATATAAACAC 57.379 29.630 0.00 0.00 0.00 3.32
2977 5812 7.461107 ACAAGTCCGAAATTCATATAAACACG 58.539 34.615 0.00 0.00 0.00 4.49
2978 5813 6.598753 AGTCCGAAATTCATATAAACACGG 57.401 37.500 0.00 0.00 39.30 4.94
2979 5814 5.007332 AGTCCGAAATTCATATAAACACGGC 59.993 40.000 0.00 0.00 38.11 5.68
2980 5815 4.273969 TCCGAAATTCATATAAACACGGCC 59.726 41.667 0.00 0.00 38.11 6.13
2981 5816 4.208355 CGAAATTCATATAAACACGGCCG 58.792 43.478 26.86 26.86 0.00 6.13
2982 5817 4.533222 GAAATTCATATAAACACGGCCGG 58.467 43.478 31.76 20.69 0.00 6.13
2983 5818 2.983907 TTCATATAAACACGGCCGGA 57.016 45.000 31.76 10.72 0.00 5.14
2984 5819 3.478857 TTCATATAAACACGGCCGGAT 57.521 42.857 31.76 14.64 0.00 4.18
2985 5820 3.478857 TCATATAAACACGGCCGGATT 57.521 42.857 31.76 22.14 0.00 3.01
2986 5821 4.603989 TCATATAAACACGGCCGGATTA 57.396 40.909 31.76 23.52 0.00 1.75
2987 5822 4.309099 TCATATAAACACGGCCGGATTAC 58.691 43.478 31.76 0.00 0.00 1.89
2988 5823 2.695127 ATAAACACGGCCGGATTACA 57.305 45.000 31.76 14.21 0.00 2.41
2989 5824 2.695127 TAAACACGGCCGGATTACAT 57.305 45.000 31.76 10.55 0.00 2.29
2990 5825 2.695127 AAACACGGCCGGATTACATA 57.305 45.000 31.76 0.00 0.00 2.29
2991 5826 2.922740 AACACGGCCGGATTACATAT 57.077 45.000 31.76 0.57 0.00 1.78
2992 5827 4.339872 AAACACGGCCGGATTACATATA 57.660 40.909 31.76 0.00 0.00 0.86
2993 5828 4.339872 AACACGGCCGGATTACATATAA 57.660 40.909 31.76 0.00 0.00 0.98
2994 5829 4.339872 ACACGGCCGGATTACATATAAA 57.660 40.909 31.76 0.00 0.00 1.40
2995 5830 4.060205 ACACGGCCGGATTACATATAAAC 58.940 43.478 31.76 0.00 0.00 2.01
2996 5831 4.059511 CACGGCCGGATTACATATAAACA 58.940 43.478 31.76 0.00 0.00 2.83
2997 5832 4.693566 CACGGCCGGATTACATATAAACAT 59.306 41.667 31.76 0.00 0.00 2.71
2998 5833 5.870433 CACGGCCGGATTACATATAAACATA 59.130 40.000 31.76 0.00 0.00 2.29
2999 5834 5.870978 ACGGCCGGATTACATATAAACATAC 59.129 40.000 31.76 0.00 0.00 2.39
3000 5835 5.292589 CGGCCGGATTACATATAAACATACC 59.707 44.000 20.10 0.00 0.00 2.73
3001 5836 5.292589 GGCCGGATTACATATAAACATACCG 59.707 44.000 5.05 0.00 37.02 4.02
3002 5837 5.870978 GCCGGATTACATATAAACATACCGT 59.129 40.000 5.05 0.00 35.79 4.83
3003 5838 7.035004 GCCGGATTACATATAAACATACCGTA 58.965 38.462 5.05 0.00 35.79 4.02
3004 5839 7.707893 GCCGGATTACATATAAACATACCGTAT 59.292 37.037 5.05 0.00 35.79 3.06
3005 5840 9.590451 CCGGATTACATATAAACATACCGTATT 57.410 33.333 0.00 0.00 35.79 1.89
3021 5856 9.952341 CATACCGTATTTCATATAAACATGACG 57.048 33.333 0.00 0.00 34.69 4.35
3022 5857 7.416154 ACCGTATTTCATATAAACATGACGG 57.584 36.000 0.00 5.94 43.16 4.79
3023 5858 6.425721 ACCGTATTTCATATAAACATGACGGG 59.574 38.462 15.38 1.99 42.44 5.28
3024 5859 6.425721 CCGTATTTCATATAAACATGACGGGT 59.574 38.462 0.00 0.00 38.20 5.28
3025 5860 7.041644 CCGTATTTCATATAAACATGACGGGTT 60.042 37.037 0.00 0.00 38.20 4.11
3026 5861 8.339714 CGTATTTCATATAAACATGACGGGTTT 58.660 33.333 0.00 0.00 41.11 3.27
3027 5862 9.659830 GTATTTCATATAAACATGACGGGTTTC 57.340 33.333 0.00 0.00 39.12 2.78
3028 5863 7.689446 TTTCATATAAACATGACGGGTTTCA 57.311 32.000 0.00 0.00 39.12 2.69
3029 5864 7.873719 TTCATATAAACATGACGGGTTTCAT 57.126 32.000 0.00 0.00 39.12 2.57
3030 5865 7.873719 TCATATAAACATGACGGGTTTCATT 57.126 32.000 0.00 0.00 39.12 2.57
3031 5866 8.966069 TCATATAAACATGACGGGTTTCATTA 57.034 30.769 0.00 0.00 39.12 1.90
3032 5867 8.832521 TCATATAAACATGACGGGTTTCATTAC 58.167 33.333 0.00 0.00 39.12 1.89
3033 5868 8.616942 CATATAAACATGACGGGTTTCATTACA 58.383 33.333 0.00 0.00 39.12 2.41
3034 5869 5.776173 AAACATGACGGGTTTCATTACAA 57.224 34.783 0.00 0.00 33.74 2.41
3035 5870 5.776173 AACATGACGGGTTTCATTACAAA 57.224 34.783 0.00 0.00 33.74 2.83
3036 5871 5.975693 ACATGACGGGTTTCATTACAAAT 57.024 34.783 0.00 0.00 33.74 2.32
3037 5872 7.455641 AACATGACGGGTTTCATTACAAATA 57.544 32.000 0.00 0.00 33.74 1.40
3038 5873 6.848451 ACATGACGGGTTTCATTACAAATAC 58.152 36.000 0.00 0.00 33.74 1.89
3039 5874 6.431543 ACATGACGGGTTTCATTACAAATACA 59.568 34.615 0.00 0.00 33.74 2.29
3040 5875 7.122055 ACATGACGGGTTTCATTACAAATACAT 59.878 33.333 0.00 0.00 33.74 2.29
3041 5876 7.079182 TGACGGGTTTCATTACAAATACATC 57.921 36.000 0.00 0.00 0.00 3.06
3042 5877 6.655425 TGACGGGTTTCATTACAAATACATCA 59.345 34.615 0.00 0.00 0.00 3.07
3043 5878 7.175119 TGACGGGTTTCATTACAAATACATCAA 59.825 33.333 0.00 0.00 0.00 2.57
3044 5879 7.887381 ACGGGTTTCATTACAAATACATCAAA 58.113 30.769 0.00 0.00 0.00 2.69
3045 5880 8.026607 ACGGGTTTCATTACAAATACATCAAAG 58.973 33.333 0.00 0.00 0.00 2.77
3046 5881 7.009174 CGGGTTTCATTACAAATACATCAAAGC 59.991 37.037 0.00 0.00 0.00 3.51
3047 5882 7.009174 GGGTTTCATTACAAATACATCAAAGCG 59.991 37.037 0.00 0.00 0.00 4.68
3048 5883 7.009174 GGTTTCATTACAAATACATCAAAGCGG 59.991 37.037 0.00 0.00 0.00 5.52
3049 5884 6.751514 TCATTACAAATACATCAAAGCGGT 57.248 33.333 0.00 0.00 0.00 5.68
3050 5885 6.781138 TCATTACAAATACATCAAAGCGGTC 58.219 36.000 0.00 0.00 0.00 4.79
3051 5886 5.554822 TTACAAATACATCAAAGCGGTCC 57.445 39.130 0.00 0.00 0.00 4.46
3052 5887 3.686016 ACAAATACATCAAAGCGGTCCT 58.314 40.909 0.00 0.00 0.00 3.85
3053 5888 4.839121 ACAAATACATCAAAGCGGTCCTA 58.161 39.130 0.00 0.00 0.00 2.94
3054 5889 5.250200 ACAAATACATCAAAGCGGTCCTAA 58.750 37.500 0.00 0.00 0.00 2.69
3055 5890 5.354234 ACAAATACATCAAAGCGGTCCTAAG 59.646 40.000 0.00 0.00 0.00 2.18
3056 5891 1.739067 ACATCAAAGCGGTCCTAAGC 58.261 50.000 0.00 0.00 0.00 3.09
3058 5893 0.462047 ATCAAAGCGGTCCTAAGCGG 60.462 55.000 0.00 0.00 46.20 5.52
3059 5894 2.106683 CAAAGCGGTCCTAAGCGGG 61.107 63.158 0.00 0.00 46.20 6.13
3060 5895 3.971109 AAAGCGGTCCTAAGCGGGC 62.971 63.158 0.00 0.00 46.20 6.13
3062 5897 4.893601 GCGGTCCTAAGCGGGCTC 62.894 72.222 0.00 0.00 46.20 4.70
3063 5898 4.570663 CGGTCCTAAGCGGGCTCG 62.571 72.222 0.00 0.00 42.53 5.03
3064 5899 4.222847 GGTCCTAAGCGGGCTCGG 62.223 72.222 8.71 0.00 37.61 4.63
3065 5900 4.893601 GTCCTAAGCGGGCTCGGC 62.894 72.222 8.71 0.00 33.40 5.54
3081 5916 4.176851 GCGTCCGGTCCTCGTCTC 62.177 72.222 0.00 0.00 37.11 3.36
3082 5917 3.507009 CGTCCGGTCCTCGTCTCC 61.507 72.222 0.00 0.00 37.11 3.71
3083 5918 3.507009 GTCCGGTCCTCGTCTCCG 61.507 72.222 0.00 0.00 43.30 4.63
3084 5919 3.709633 TCCGGTCCTCGTCTCCGA 61.710 66.667 0.00 0.00 46.05 4.55
3085 5920 2.516460 CCGGTCCTCGTCTCCGAT 60.516 66.667 4.38 0.00 46.05 4.18
3086 5921 2.544698 CCGGTCCTCGTCTCCGATC 61.545 68.421 4.38 0.00 46.05 3.69
3087 5922 1.818363 CGGTCCTCGTCTCCGATCA 60.818 63.158 0.00 0.00 46.05 2.92
3088 5923 1.167155 CGGTCCTCGTCTCCGATCAT 61.167 60.000 0.00 0.00 46.05 2.45
3089 5924 0.594110 GGTCCTCGTCTCCGATCATC 59.406 60.000 0.00 0.00 43.27 2.92
3090 5925 1.309950 GTCCTCGTCTCCGATCATCA 58.690 55.000 0.00 0.00 43.27 3.07
3091 5926 1.265635 GTCCTCGTCTCCGATCATCAG 59.734 57.143 0.00 0.00 43.27 2.90
3092 5927 0.039617 CCTCGTCTCCGATCATCAGC 60.040 60.000 0.00 0.00 43.27 4.26
3093 5928 0.039617 CTCGTCTCCGATCATCAGCC 60.040 60.000 0.00 0.00 43.27 4.85
3094 5929 1.006805 CGTCTCCGATCATCAGCCC 60.007 63.158 0.00 0.00 35.63 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.065976 TGGAGATCTTCTATTTCTTGCCAA 57.934 37.500 1.86 0.00 0.00 4.52
1 2 5.426509 TCTGGAGATCTTCTATTTCTTGCCA 59.573 40.000 1.86 0.00 0.00 4.92
2 3 5.923204 TCTGGAGATCTTCTATTTCTTGCC 58.077 41.667 1.86 0.00 0.00 4.52
3 4 9.723601 ATATTCTGGAGATCTTCTATTTCTTGC 57.276 33.333 1.86 0.00 0.00 4.01
39 40 4.134379 ACATGGATCACAGAGCTACAAG 57.866 45.455 0.00 0.00 0.00 3.16
49 50 0.611618 GGCCACCAACATGGATCACA 60.612 55.000 0.00 0.00 43.02 3.58
94 102 2.296190 GGCTAAAACCAAGACAACCCAG 59.704 50.000 0.00 0.00 0.00 4.45
152 163 9.558396 AAAAGACTTGCCATTTCATTGATTAAA 57.442 25.926 0.00 0.00 0.00 1.52
241 252 1.477685 ATCCGGTTCCAACACGACCT 61.478 55.000 0.00 0.00 0.00 3.85
306 317 7.306953 CAATTAATTTGCTGGGTTTTGATTGG 58.693 34.615 0.00 0.00 0.00 3.16
437 450 3.495983 GGGGAATTTTGGTTTGGGAACAG 60.496 47.826 0.00 0.00 44.54 3.16
483 497 7.065923 GTGCGATTTAGATTTAGGGAGTTTTCT 59.934 37.037 0.00 0.00 0.00 2.52
484 498 7.148306 TGTGCGATTTAGATTTAGGGAGTTTTC 60.148 37.037 0.00 0.00 0.00 2.29
512 526 5.404968 CGGACTCTTCAAATAGATCTCATGC 59.595 44.000 0.00 0.00 0.00 4.06
603 1078 5.107065 CCGAACAAGAAACTAGTTCCACATC 60.107 44.000 8.95 2.24 38.67 3.06
609 1084 4.685165 GGAGTCCGAACAAGAAACTAGTTC 59.315 45.833 8.95 2.91 38.54 3.01
646 1121 6.916360 TTTGATCTTTCTAACCTTGGCATT 57.084 33.333 0.00 0.00 0.00 3.56
659 1134 6.858478 GGCTCACAACTAACTTTTGATCTTTC 59.142 38.462 0.00 0.00 0.00 2.62
687 2566 4.062293 CACTTTTCATAGACGGTGGAACA 58.938 43.478 0.00 0.00 39.98 3.18
714 2598 2.565210 ACATTTCGGTACATACGCGA 57.435 45.000 15.93 0.00 0.00 5.87
846 2747 1.490574 AGGCAGGCTGTTACTAGGAG 58.509 55.000 17.16 0.00 0.00 3.69
847 2748 2.024273 ACTAGGCAGGCTGTTACTAGGA 60.024 50.000 29.07 10.33 36.37 2.94
848 2749 2.389715 ACTAGGCAGGCTGTTACTAGG 58.610 52.381 29.07 18.96 36.37 3.02
849 2750 4.208746 ACTACTAGGCAGGCTGTTACTAG 58.791 47.826 26.57 26.57 37.67 2.57
850 2751 4.246712 ACTACTAGGCAGGCTGTTACTA 57.753 45.455 17.16 14.41 0.00 1.82
1446 3428 4.840005 CGCTTCTTCCCCCGGAGC 62.840 72.222 0.73 0.00 31.21 4.70
1447 3429 4.840005 GCGCTTCTTCCCCCGGAG 62.840 72.222 0.73 0.00 31.21 4.63
2097 4139 4.639310 TGTAGGCTTGTAGCAGACTAGTAC 59.361 45.833 0.00 0.00 44.75 2.73
2098 4140 4.851843 TGTAGGCTTGTAGCAGACTAGTA 58.148 43.478 0.00 0.00 44.75 1.82
2099 4141 3.698289 TGTAGGCTTGTAGCAGACTAGT 58.302 45.455 0.00 0.00 44.75 2.57
2130 4177 5.521735 GCTGATCATAAGTGACTACAACCTG 59.478 44.000 0.00 0.00 37.14 4.00
2182 4294 5.412594 ACTGACTACAACCATTACATTGCTG 59.587 40.000 0.00 0.00 0.00 4.41
2193 4305 5.046663 TGCTGATCATAACTGACTACAACCA 60.047 40.000 0.00 0.00 33.22 3.67
2194 4306 5.419542 TGCTGATCATAACTGACTACAACC 58.580 41.667 0.00 0.00 33.22 3.77
2195 4307 6.968131 TTGCTGATCATAACTGACTACAAC 57.032 37.500 0.00 0.00 33.22 3.32
2200 4312 9.445878 CCATTATATTGCTGATCATAACTGACT 57.554 33.333 0.00 0.00 33.22 3.41
2201 4313 9.224267 ACCATTATATTGCTGATCATAACTGAC 57.776 33.333 0.00 0.00 33.22 3.51
2202 4314 9.797642 AACCATTATATTGCTGATCATAACTGA 57.202 29.630 0.00 0.00 35.41 3.41
2203 4315 9.836076 CAACCATTATATTGCTGATCATAACTG 57.164 33.333 0.00 0.00 0.00 3.16
2204 4316 8.517878 GCAACCATTATATTGCTGATCATAACT 58.482 33.333 0.00 0.00 46.21 2.24
2205 4317 8.679288 GCAACCATTATATTGCTGATCATAAC 57.321 34.615 0.00 0.00 46.21 1.89
2216 4328 8.839343 TCATAAGTGACTGCAACCATTATATTG 58.161 33.333 0.00 0.00 0.00 1.90
2217 4329 8.978874 TCATAAGTGACTGCAACCATTATATT 57.021 30.769 0.00 0.00 0.00 1.28
2218 4330 9.578576 AATCATAAGTGACTGCAACCATTATAT 57.421 29.630 0.00 0.00 37.14 0.86
2219 4331 8.978874 AATCATAAGTGACTGCAACCATTATA 57.021 30.769 0.00 0.00 37.14 0.98
2220 4332 7.886629 AATCATAAGTGACTGCAACCATTAT 57.113 32.000 0.00 0.00 37.14 1.28
2221 4333 7.282224 GGTAATCATAAGTGACTGCAACCATTA 59.718 37.037 0.00 0.00 37.14 1.90
2222 4334 6.095440 GGTAATCATAAGTGACTGCAACCATT 59.905 38.462 0.00 0.00 37.14 3.16
2223 4335 5.590259 GGTAATCATAAGTGACTGCAACCAT 59.410 40.000 0.00 0.00 37.14 3.55
2224 4336 4.941263 GGTAATCATAAGTGACTGCAACCA 59.059 41.667 0.00 0.00 37.14 3.67
2225 4337 4.941263 TGGTAATCATAAGTGACTGCAACC 59.059 41.667 0.00 0.00 37.14 3.77
2226 4338 6.494893 TTGGTAATCATAAGTGACTGCAAC 57.505 37.500 0.00 0.00 37.14 4.17
2227 4339 6.658816 ACATTGGTAATCATAAGTGACTGCAA 59.341 34.615 0.00 0.00 37.14 4.08
2228 4340 6.179756 ACATTGGTAATCATAAGTGACTGCA 58.820 36.000 0.00 0.00 37.14 4.41
2229 4341 6.683974 ACATTGGTAATCATAAGTGACTGC 57.316 37.500 0.00 0.00 37.14 4.40
2231 4343 9.342308 CCATTACATTGGTAATCATAAGTGACT 57.658 33.333 0.00 0.00 44.88 3.41
2261 4373 7.157347 AGTGTCATATATGGCATAAGTGACTG 58.843 38.462 32.45 18.02 45.07 3.51
2279 4889 7.928307 ATAGTGTATTGCTTTTGAGTGTCAT 57.072 32.000 0.00 0.00 0.00 3.06
2385 4995 5.693104 TGTCACAAAATCTACACGTAGAACC 59.307 40.000 10.78 0.00 44.44 3.62
2419 5034 1.467734 GCTGAAGATCTGTTGTGCCTG 59.532 52.381 0.00 0.00 0.00 4.85
2430 5045 2.738846 TGCTTGTCGAAAGCTGAAGATC 59.261 45.455 23.39 0.00 43.38 2.75
2448 5063 6.815089 TGGTTTAATCAATTGACAAACTGCT 58.185 32.000 28.83 7.50 34.91 4.24
2449 5064 7.475771 TTGGTTTAATCAATTGACAAACTGC 57.524 32.000 28.83 20.56 34.91 4.40
2450 5065 7.224362 TGCTTGGTTTAATCAATTGACAAACTG 59.776 33.333 28.83 23.01 34.91 3.16
2451 5066 7.271511 TGCTTGGTTTAATCAATTGACAAACT 58.728 30.769 28.83 9.26 34.91 2.66
2466 5286 6.520272 ACTGTTATGCAAAATGCTTGGTTTA 58.480 32.000 3.78 0.00 45.31 2.01
2481 5301 5.880332 TCAGGAAAAGGATGTACTGTTATGC 59.120 40.000 0.00 0.00 0.00 3.14
2482 5302 7.331026 TCTCAGGAAAAGGATGTACTGTTATG 58.669 38.462 0.00 0.00 0.00 1.90
2483 5303 7.496346 TCTCAGGAAAAGGATGTACTGTTAT 57.504 36.000 0.00 0.00 0.00 1.89
2485 5305 5.825593 TCTCAGGAAAAGGATGTACTGTT 57.174 39.130 0.00 0.00 0.00 3.16
2486 5306 7.202047 GGATATCTCAGGAAAAGGATGTACTGT 60.202 40.741 2.05 0.00 0.00 3.55
2487 5307 7.158021 GGATATCTCAGGAAAAGGATGTACTG 58.842 42.308 2.05 0.00 0.00 2.74
2490 5310 7.690454 TTGGATATCTCAGGAAAAGGATGTA 57.310 36.000 2.05 0.00 0.00 2.29
2491 5311 6.581388 TTGGATATCTCAGGAAAAGGATGT 57.419 37.500 2.05 0.00 0.00 3.06
2492 5312 7.285566 TCTTTGGATATCTCAGGAAAAGGATG 58.714 38.462 2.05 0.00 0.00 3.51
2493 5313 7.457380 TCTTTGGATATCTCAGGAAAAGGAT 57.543 36.000 2.05 0.00 0.00 3.24
2494 5314 6.891306 TCTTTGGATATCTCAGGAAAAGGA 57.109 37.500 2.05 0.00 0.00 3.36
2495 5315 7.041508 CGAATCTTTGGATATCTCAGGAAAAGG 60.042 40.741 2.05 0.00 0.00 3.11
2496 5316 7.712639 TCGAATCTTTGGATATCTCAGGAAAAG 59.287 37.037 2.05 4.52 0.00 2.27
2497 5317 7.564793 TCGAATCTTTGGATATCTCAGGAAAA 58.435 34.615 2.05 0.00 0.00 2.29
2499 5319 6.239430 CCTCGAATCTTTGGATATCTCAGGAA 60.239 42.308 2.05 0.00 0.00 3.36
2500 5320 5.244851 CCTCGAATCTTTGGATATCTCAGGA 59.755 44.000 2.05 0.00 0.00 3.86
2502 5322 4.928615 GCCTCGAATCTTTGGATATCTCAG 59.071 45.833 2.05 0.00 0.00 3.35
2615 5435 4.656575 TGGGACGGTCCATATTTAGATCAA 59.343 41.667 27.32 0.00 38.64 2.57
2633 5453 4.040339 ACATTGGAATTTTTCTGGTGGGAC 59.960 41.667 0.00 0.00 0.00 4.46
2640 5460 9.185192 GTCTCACTAAACATTGGAATTTTTCTG 57.815 33.333 0.00 0.00 0.00 3.02
2687 5507 7.871973 TGTTGCTATTTATCACAAAAATGCACT 59.128 29.630 0.00 0.00 33.85 4.40
2733 5553 4.811024 TCTCACTTTAGCACACACAGAAAG 59.189 41.667 0.00 0.00 34.11 2.62
2737 5557 5.928839 AGTATTCTCACTTTAGCACACACAG 59.071 40.000 0.00 0.00 0.00 3.66
2743 5563 7.674471 AAAGGAAGTATTCTCACTTTAGCAC 57.326 36.000 0.00 0.00 46.56 4.40
2765 5600 7.309744 CCACTAGCTCCATAATCCAAACAAAAA 60.310 37.037 0.00 0.00 0.00 1.94
2770 5605 3.565902 GCCACTAGCTCCATAATCCAAAC 59.434 47.826 0.00 0.00 38.99 2.93
2772 5607 2.106511 GGCCACTAGCTCCATAATCCAA 59.893 50.000 0.00 0.00 43.05 3.53
2785 5620 1.014352 GCCGTAAATGTGGCCACTAG 58.986 55.000 34.75 18.65 45.73 2.57
2792 5627 2.036958 TGGAGATGCCGTAAATGTGG 57.963 50.000 0.00 0.00 40.66 4.17
2801 5636 2.745884 TTGCCGTTGGAGATGCCG 60.746 61.111 0.00 0.00 40.66 5.69
2823 5658 1.210967 ACGGATGCGGGAGGATTTTTA 59.789 47.619 12.44 0.00 42.67 1.52
2842 5677 4.083862 GTCCCCCTGTCTGCGGAC 62.084 72.222 19.20 19.20 42.42 4.79
2846 5681 1.689273 CATAGTAGTCCCCCTGTCTGC 59.311 57.143 0.00 0.00 0.00 4.26
2853 5688 0.757935 TGTCCGCATAGTAGTCCCCC 60.758 60.000 0.00 0.00 0.00 5.40
2854 5689 0.388294 GTGTCCGCATAGTAGTCCCC 59.612 60.000 0.00 0.00 0.00 4.81
2855 5690 0.030369 CGTGTCCGCATAGTAGTCCC 59.970 60.000 0.00 0.00 0.00 4.46
2856 5691 0.030369 CCGTGTCCGCATAGTAGTCC 59.970 60.000 0.00 0.00 0.00 3.85
2857 5692 1.019673 TCCGTGTCCGCATAGTAGTC 58.980 55.000 0.00 0.00 0.00 2.59
2858 5693 1.337071 CATCCGTGTCCGCATAGTAGT 59.663 52.381 0.00 0.00 0.00 2.73
2859 5694 1.930817 GCATCCGTGTCCGCATAGTAG 60.931 57.143 0.00 0.00 0.00 2.57
2860 5695 0.031585 GCATCCGTGTCCGCATAGTA 59.968 55.000 0.00 0.00 0.00 1.82
2861 5696 1.227263 GCATCCGTGTCCGCATAGT 60.227 57.895 0.00 0.00 0.00 2.12
2862 5697 2.302952 CGCATCCGTGTCCGCATAG 61.303 63.158 0.00 0.00 0.00 2.23
2863 5698 2.279186 CGCATCCGTGTCCGCATA 60.279 61.111 0.00 0.00 0.00 3.14
2867 5702 4.873129 CTCCCGCATCCGTGTCCG 62.873 72.222 0.00 0.00 0.00 4.79
2868 5703 4.530857 CCTCCCGCATCCGTGTCC 62.531 72.222 0.00 0.00 0.00 4.02
2879 5714 4.113815 TTGGATGGCTGCCTCCCG 62.114 66.667 24.85 0.00 0.00 5.14
2880 5715 2.440980 GTTGGATGGCTGCCTCCC 60.441 66.667 24.85 21.96 0.00 4.30
2881 5716 2.252072 TACGTTGGATGGCTGCCTCC 62.252 60.000 21.03 21.98 0.00 4.30
2882 5717 0.811616 CTACGTTGGATGGCTGCCTC 60.812 60.000 21.03 14.08 0.00 4.70
2883 5718 1.221840 CTACGTTGGATGGCTGCCT 59.778 57.895 21.03 5.22 0.00 4.75
2884 5719 1.078426 ACTACGTTGGATGGCTGCC 60.078 57.895 12.87 12.87 0.00 4.85
2885 5720 1.421410 CGACTACGTTGGATGGCTGC 61.421 60.000 0.00 0.00 34.56 5.25
2886 5721 1.421410 GCGACTACGTTGGATGGCTG 61.421 60.000 0.00 0.00 41.98 4.85
2887 5722 1.153628 GCGACTACGTTGGATGGCT 60.154 57.895 0.00 0.00 41.98 4.75
2888 5723 0.810031 ATGCGACTACGTTGGATGGC 60.810 55.000 0.00 0.00 41.98 4.40
2889 5724 2.124903 GTATGCGACTACGTTGGATGG 58.875 52.381 0.00 0.00 41.98 3.51
2890 5725 2.804647 TGTATGCGACTACGTTGGATG 58.195 47.619 0.00 0.00 41.98 3.51
2891 5726 3.728076 ATGTATGCGACTACGTTGGAT 57.272 42.857 0.00 0.00 41.98 3.41
2892 5727 3.513680 AATGTATGCGACTACGTTGGA 57.486 42.857 0.00 0.00 41.98 3.53
2893 5728 4.092237 TGAAAATGTATGCGACTACGTTGG 59.908 41.667 0.00 0.00 41.98 3.77
2894 5729 5.013236 GTGAAAATGTATGCGACTACGTTG 58.987 41.667 0.00 0.00 41.98 4.10
2895 5730 4.687018 TGTGAAAATGTATGCGACTACGTT 59.313 37.500 0.00 0.00 41.98 3.99
2896 5731 4.239304 TGTGAAAATGTATGCGACTACGT 58.761 39.130 0.00 0.00 41.98 3.57
2897 5732 4.833469 TGTGAAAATGTATGCGACTACG 57.167 40.909 0.00 0.00 42.93 3.51
2898 5733 5.922546 TGTTGTGAAAATGTATGCGACTAC 58.077 37.500 0.00 0.00 0.00 2.73
2899 5734 6.203915 AGTTGTTGTGAAAATGTATGCGACTA 59.796 34.615 0.00 0.00 0.00 2.59
2900 5735 5.008613 AGTTGTTGTGAAAATGTATGCGACT 59.991 36.000 0.00 0.00 0.00 4.18
2901 5736 5.212194 AGTTGTTGTGAAAATGTATGCGAC 58.788 37.500 0.00 0.00 0.00 5.19
2902 5737 5.431420 AGTTGTTGTGAAAATGTATGCGA 57.569 34.783 0.00 0.00 0.00 5.10
2903 5738 4.318071 CGAGTTGTTGTGAAAATGTATGCG 59.682 41.667 0.00 0.00 0.00 4.73
2904 5739 5.448438 TCGAGTTGTTGTGAAAATGTATGC 58.552 37.500 0.00 0.00 0.00 3.14
2905 5740 6.359617 GGTTCGAGTTGTTGTGAAAATGTATG 59.640 38.462 0.00 0.00 0.00 2.39
2906 5741 6.038825 TGGTTCGAGTTGTTGTGAAAATGTAT 59.961 34.615 0.00 0.00 0.00 2.29
2907 5742 5.354513 TGGTTCGAGTTGTTGTGAAAATGTA 59.645 36.000 0.00 0.00 0.00 2.29
2908 5743 4.156922 TGGTTCGAGTTGTTGTGAAAATGT 59.843 37.500 0.00 0.00 0.00 2.71
2909 5744 4.667262 TGGTTCGAGTTGTTGTGAAAATG 58.333 39.130 0.00 0.00 0.00 2.32
2910 5745 4.974368 TGGTTCGAGTTGTTGTGAAAAT 57.026 36.364 0.00 0.00 0.00 1.82
2911 5746 4.023107 TGTTGGTTCGAGTTGTTGTGAAAA 60.023 37.500 0.00 0.00 0.00 2.29
2912 5747 3.502595 TGTTGGTTCGAGTTGTTGTGAAA 59.497 39.130 0.00 0.00 0.00 2.69
2913 5748 3.075148 TGTTGGTTCGAGTTGTTGTGAA 58.925 40.909 0.00 0.00 0.00 3.18
2914 5749 2.675844 CTGTTGGTTCGAGTTGTTGTGA 59.324 45.455 0.00 0.00 0.00 3.58
2915 5750 2.675844 TCTGTTGGTTCGAGTTGTTGTG 59.324 45.455 0.00 0.00 0.00 3.33
2916 5751 2.980568 TCTGTTGGTTCGAGTTGTTGT 58.019 42.857 0.00 0.00 0.00 3.32
2917 5752 3.680789 GTTCTGTTGGTTCGAGTTGTTG 58.319 45.455 0.00 0.00 0.00 3.33
2918 5753 2.350498 CGTTCTGTTGGTTCGAGTTGTT 59.650 45.455 0.00 0.00 0.00 2.83
2919 5754 1.931172 CGTTCTGTTGGTTCGAGTTGT 59.069 47.619 0.00 0.00 0.00 3.32
2920 5755 2.198406 TCGTTCTGTTGGTTCGAGTTG 58.802 47.619 0.00 0.00 0.00 3.16
2921 5756 2.589798 TCGTTCTGTTGGTTCGAGTT 57.410 45.000 0.00 0.00 0.00 3.01
2922 5757 2.589798 TTCGTTCTGTTGGTTCGAGT 57.410 45.000 0.00 0.00 32.39 4.18
2923 5758 4.025229 TGAATTTCGTTCTGTTGGTTCGAG 60.025 41.667 0.00 0.00 37.72 4.04
2924 5759 3.872182 TGAATTTCGTTCTGTTGGTTCGA 59.128 39.130 0.00 0.00 37.72 3.71
2925 5760 4.203950 TGAATTTCGTTCTGTTGGTTCG 57.796 40.909 0.00 0.00 37.72 3.95
2926 5761 6.205784 TGAATGAATTTCGTTCTGTTGGTTC 58.794 36.000 24.55 4.27 41.66 3.62
2927 5762 6.142818 TGAATGAATTTCGTTCTGTTGGTT 57.857 33.333 24.55 0.00 41.66 3.67
2928 5763 5.766150 TGAATGAATTTCGTTCTGTTGGT 57.234 34.783 24.55 0.00 41.66 3.67
2929 5764 6.475076 TGTTTGAATGAATTTCGTTCTGTTGG 59.525 34.615 24.55 0.00 41.66 3.77
2930 5765 7.448588 TGTTTGAATGAATTTCGTTCTGTTG 57.551 32.000 24.55 0.00 41.66 3.33
2931 5766 7.759433 ACTTGTTTGAATGAATTTCGTTCTGTT 59.241 29.630 24.55 6.63 41.66 3.16
2932 5767 7.257722 ACTTGTTTGAATGAATTTCGTTCTGT 58.742 30.769 24.55 14.09 41.66 3.41
2933 5768 7.096477 GGACTTGTTTGAATGAATTTCGTTCTG 60.096 37.037 24.55 13.66 41.66 3.02
2934 5769 6.918022 GGACTTGTTTGAATGAATTTCGTTCT 59.082 34.615 24.55 8.99 41.66 3.01
2935 5770 6.129457 CGGACTTGTTTGAATGAATTTCGTTC 60.129 38.462 19.90 19.90 41.52 3.95
2936 5771 5.685511 CGGACTTGTTTGAATGAATTTCGTT 59.314 36.000 3.51 3.51 37.13 3.85
2937 5772 5.008217 TCGGACTTGTTTGAATGAATTTCGT 59.992 36.000 0.00 0.00 37.13 3.85
2938 5773 5.448438 TCGGACTTGTTTGAATGAATTTCG 58.552 37.500 0.00 0.00 37.13 3.46
2939 5774 7.692908 TTTCGGACTTGTTTGAATGAATTTC 57.307 32.000 0.00 0.00 34.72 2.17
2940 5775 8.661352 AATTTCGGACTTGTTTGAATGAATTT 57.339 26.923 0.00 0.00 0.00 1.82
2941 5776 7.925483 TGAATTTCGGACTTGTTTGAATGAATT 59.075 29.630 0.00 0.00 0.00 2.17
2942 5777 7.432869 TGAATTTCGGACTTGTTTGAATGAAT 58.567 30.769 0.00 0.00 0.00 2.57
2943 5778 6.800543 TGAATTTCGGACTTGTTTGAATGAA 58.199 32.000 0.00 0.00 0.00 2.57
2944 5779 6.384258 TGAATTTCGGACTTGTTTGAATGA 57.616 33.333 0.00 0.00 0.00 2.57
2945 5780 8.915871 ATATGAATTTCGGACTTGTTTGAATG 57.084 30.769 0.00 0.00 0.00 2.67
2948 5783 9.834628 GTTTATATGAATTTCGGACTTGTTTGA 57.165 29.630 0.00 0.00 0.00 2.69
2949 5784 9.619316 TGTTTATATGAATTTCGGACTTGTTTG 57.381 29.630 0.00 0.00 0.00 2.93
2950 5785 9.620660 GTGTTTATATGAATTTCGGACTTGTTT 57.379 29.630 0.00 0.00 0.00 2.83
2951 5786 7.960738 CGTGTTTATATGAATTTCGGACTTGTT 59.039 33.333 0.00 0.00 0.00 2.83
2952 5787 7.413657 CCGTGTTTATATGAATTTCGGACTTGT 60.414 37.037 11.99 0.00 38.03 3.16
2953 5788 6.905076 CCGTGTTTATATGAATTTCGGACTTG 59.095 38.462 11.99 0.00 38.03 3.16
2954 5789 6.457799 GCCGTGTTTATATGAATTTCGGACTT 60.458 38.462 17.67 0.00 38.03 3.01
2955 5790 5.007332 GCCGTGTTTATATGAATTTCGGACT 59.993 40.000 17.67 0.00 38.03 3.85
2956 5791 5.202640 GCCGTGTTTATATGAATTTCGGAC 58.797 41.667 17.67 9.79 38.03 4.79
2957 5792 4.273969 GGCCGTGTTTATATGAATTTCGGA 59.726 41.667 17.67 0.00 38.03 4.55
2958 5793 4.533222 GGCCGTGTTTATATGAATTTCGG 58.467 43.478 12.62 12.62 38.67 4.30
2959 5794 4.208355 CGGCCGTGTTTATATGAATTTCG 58.792 43.478 19.50 0.00 0.00 3.46
2960 5795 4.273969 TCCGGCCGTGTTTATATGAATTTC 59.726 41.667 26.12 0.00 0.00 2.17
2961 5796 4.200874 TCCGGCCGTGTTTATATGAATTT 58.799 39.130 26.12 0.00 0.00 1.82
2962 5797 3.811083 TCCGGCCGTGTTTATATGAATT 58.189 40.909 26.12 0.00 0.00 2.17
2963 5798 3.478857 TCCGGCCGTGTTTATATGAAT 57.521 42.857 26.12 0.00 0.00 2.57
2964 5799 2.983907 TCCGGCCGTGTTTATATGAA 57.016 45.000 26.12 0.00 0.00 2.57
2965 5800 3.478857 AATCCGGCCGTGTTTATATGA 57.521 42.857 26.12 11.08 0.00 2.15
2966 5801 4.059511 TGTAATCCGGCCGTGTTTATATG 58.940 43.478 26.12 5.01 0.00 1.78
2967 5802 4.339872 TGTAATCCGGCCGTGTTTATAT 57.660 40.909 26.12 3.57 0.00 0.86
2968 5803 3.815856 TGTAATCCGGCCGTGTTTATA 57.184 42.857 26.12 15.10 0.00 0.98
2969 5804 2.695127 TGTAATCCGGCCGTGTTTAT 57.305 45.000 26.12 6.38 0.00 1.40
2970 5805 2.695127 ATGTAATCCGGCCGTGTTTA 57.305 45.000 26.12 16.79 0.00 2.01
2971 5806 2.695127 TATGTAATCCGGCCGTGTTT 57.305 45.000 26.12 17.76 0.00 2.83
2972 5807 2.922740 ATATGTAATCCGGCCGTGTT 57.077 45.000 26.12 19.88 0.00 3.32
2973 5808 4.060205 GTTTATATGTAATCCGGCCGTGT 58.940 43.478 26.12 9.32 0.00 4.49
2974 5809 4.059511 TGTTTATATGTAATCCGGCCGTG 58.940 43.478 26.12 15.93 0.00 4.94
2975 5810 4.339872 TGTTTATATGTAATCCGGCCGT 57.660 40.909 26.12 8.42 0.00 5.68
2976 5811 5.292589 GGTATGTTTATATGTAATCCGGCCG 59.707 44.000 21.04 21.04 0.00 6.13
2977 5812 5.292589 CGGTATGTTTATATGTAATCCGGCC 59.707 44.000 0.00 0.00 0.00 6.13
2978 5813 5.870978 ACGGTATGTTTATATGTAATCCGGC 59.129 40.000 0.00 0.00 38.74 6.13
2979 5814 9.590451 AATACGGTATGTTTATATGTAATCCGG 57.410 33.333 0.58 0.00 38.74 5.14
2995 5830 9.952341 CGTCATGTTTATATGAAATACGGTATG 57.048 33.333 0.58 0.00 38.69 2.39
2996 5831 9.146984 CCGTCATGTTTATATGAAATACGGTAT 57.853 33.333 0.00 0.00 38.68 2.73
2997 5832 7.599621 CCCGTCATGTTTATATGAAATACGGTA 59.400 37.037 16.01 0.00 40.35 4.02
2998 5833 6.425721 CCCGTCATGTTTATATGAAATACGGT 59.574 38.462 16.01 0.00 40.35 4.83
2999 5834 6.425721 ACCCGTCATGTTTATATGAAATACGG 59.574 38.462 12.87 12.87 41.02 4.02
3000 5835 7.416154 ACCCGTCATGTTTATATGAAATACG 57.584 36.000 0.00 0.00 38.69 3.06
3001 5836 9.659830 GAAACCCGTCATGTTTATATGAAATAC 57.340 33.333 0.00 0.00 38.69 1.89
3002 5837 9.397280 TGAAACCCGTCATGTTTATATGAAATA 57.603 29.630 0.00 0.00 38.69 1.40
3003 5838 8.287439 TGAAACCCGTCATGTTTATATGAAAT 57.713 30.769 0.00 0.00 38.69 2.17
3004 5839 7.689446 TGAAACCCGTCATGTTTATATGAAA 57.311 32.000 0.00 0.00 38.69 2.69
3005 5840 7.873719 ATGAAACCCGTCATGTTTATATGAA 57.126 32.000 0.00 0.00 38.69 2.57
3006 5841 7.873719 AATGAAACCCGTCATGTTTATATGA 57.126 32.000 0.00 0.00 38.28 2.15
3007 5842 8.616942 TGTAATGAAACCCGTCATGTTTATATG 58.383 33.333 0.00 0.00 38.28 1.78
3008 5843 8.740123 TGTAATGAAACCCGTCATGTTTATAT 57.260 30.769 0.00 0.00 38.28 0.86
3009 5844 8.563123 TTGTAATGAAACCCGTCATGTTTATA 57.437 30.769 0.00 0.00 38.28 0.98
3010 5845 7.455641 TTGTAATGAAACCCGTCATGTTTAT 57.544 32.000 0.00 0.00 38.28 1.40
3011 5846 6.879276 TTGTAATGAAACCCGTCATGTTTA 57.121 33.333 0.00 0.00 38.28 2.01
3012 5847 5.776173 TTGTAATGAAACCCGTCATGTTT 57.224 34.783 0.00 0.00 38.28 2.83
3013 5848 5.776173 TTTGTAATGAAACCCGTCATGTT 57.224 34.783 0.00 0.00 38.28 2.71
3014 5849 5.975693 ATTTGTAATGAAACCCGTCATGT 57.024 34.783 0.00 0.00 38.28 3.21
3015 5850 6.847400 TGTATTTGTAATGAAACCCGTCATG 58.153 36.000 0.00 0.00 38.28 3.07
3016 5851 7.338196 TGATGTATTTGTAATGAAACCCGTCAT 59.662 33.333 0.00 0.00 40.01 3.06
3017 5852 6.655425 TGATGTATTTGTAATGAAACCCGTCA 59.345 34.615 0.00 0.00 0.00 4.35
3018 5853 7.079182 TGATGTATTTGTAATGAAACCCGTC 57.921 36.000 0.00 0.00 0.00 4.79
3019 5854 7.455641 TTGATGTATTTGTAATGAAACCCGT 57.544 32.000 0.00 0.00 0.00 5.28
3020 5855 7.009174 GCTTTGATGTATTTGTAATGAAACCCG 59.991 37.037 0.00 0.00 0.00 5.28
3021 5856 7.009174 CGCTTTGATGTATTTGTAATGAAACCC 59.991 37.037 0.00 0.00 0.00 4.11
3022 5857 7.009174 CCGCTTTGATGTATTTGTAATGAAACC 59.991 37.037 0.00 0.00 0.00 3.27
3023 5858 7.540745 ACCGCTTTGATGTATTTGTAATGAAAC 59.459 33.333 0.00 0.00 0.00 2.78
3024 5859 7.598278 ACCGCTTTGATGTATTTGTAATGAAA 58.402 30.769 0.00 0.00 0.00 2.69
3025 5860 7.151999 ACCGCTTTGATGTATTTGTAATGAA 57.848 32.000 0.00 0.00 0.00 2.57
3026 5861 6.183360 GGACCGCTTTGATGTATTTGTAATGA 60.183 38.462 0.00 0.00 0.00 2.57
3027 5862 5.971202 GGACCGCTTTGATGTATTTGTAATG 59.029 40.000 0.00 0.00 0.00 1.90
3028 5863 5.885912 AGGACCGCTTTGATGTATTTGTAAT 59.114 36.000 0.00 0.00 0.00 1.89
3029 5864 5.250200 AGGACCGCTTTGATGTATTTGTAA 58.750 37.500 0.00 0.00 0.00 2.41
3030 5865 4.839121 AGGACCGCTTTGATGTATTTGTA 58.161 39.130 0.00 0.00 0.00 2.41
3031 5866 3.686016 AGGACCGCTTTGATGTATTTGT 58.314 40.909 0.00 0.00 0.00 2.83
3032 5867 5.730568 GCTTAGGACCGCTTTGATGTATTTG 60.731 44.000 0.00 0.00 0.00 2.32
3033 5868 4.335594 GCTTAGGACCGCTTTGATGTATTT 59.664 41.667 0.00 0.00 0.00 1.40
3034 5869 3.877508 GCTTAGGACCGCTTTGATGTATT 59.122 43.478 0.00 0.00 0.00 1.89
3035 5870 3.467803 GCTTAGGACCGCTTTGATGTAT 58.532 45.455 0.00 0.00 0.00 2.29
3036 5871 2.737359 CGCTTAGGACCGCTTTGATGTA 60.737 50.000 0.00 0.00 0.00 2.29
3037 5872 1.739067 GCTTAGGACCGCTTTGATGT 58.261 50.000 0.00 0.00 0.00 3.06
3038 5873 0.652592 CGCTTAGGACCGCTTTGATG 59.347 55.000 0.00 0.00 0.00 3.07
3039 5874 0.462047 CCGCTTAGGACCGCTTTGAT 60.462 55.000 0.00 0.00 45.00 2.57
3040 5875 1.079405 CCGCTTAGGACCGCTTTGA 60.079 57.895 0.00 0.00 45.00 2.69
3041 5876 2.106683 CCCGCTTAGGACCGCTTTG 61.107 63.158 0.00 0.00 45.00 2.77
3042 5877 2.267961 CCCGCTTAGGACCGCTTT 59.732 61.111 0.00 0.00 45.00 3.51
3043 5878 4.468689 GCCCGCTTAGGACCGCTT 62.469 66.667 0.00 0.00 45.00 4.68
3045 5880 4.893601 GAGCCCGCTTAGGACCGC 62.894 72.222 0.00 0.00 45.00 5.68
3046 5881 4.570663 CGAGCCCGCTTAGGACCG 62.571 72.222 0.00 0.00 45.00 4.79
3047 5882 4.222847 CCGAGCCCGCTTAGGACC 62.223 72.222 6.36 0.00 45.00 4.46
3048 5883 4.893601 GCCGAGCCCGCTTAGGAC 62.894 72.222 14.04 4.44 45.00 3.85
3064 5899 4.176851 GAGACGAGGACCGGACGC 62.177 72.222 9.46 0.73 43.93 5.19
3065 5900 3.507009 GGAGACGAGGACCGGACG 61.507 72.222 9.46 10.97 43.93 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.