Multiple sequence alignment - TraesCS1B01G117500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G117500 chr1B 100.000 3032 0 0 1 3032 137554453 137557484 0.000000e+00 5600.0
1 TraesCS1B01G117500 chr1B 95.205 1022 41 6 1079 2095 137454082 137453064 0.000000e+00 1609.0
2 TraesCS1B01G117500 chr1B 88.750 80 6 3 1974 2052 137615020 137615097 8.950000e-16 95.3
3 TraesCS1B01G117500 chr1D 90.033 1826 108 30 288 2095 84874682 84876451 0.000000e+00 2296.0
4 TraesCS1B01G117500 chr1D 94.716 1022 48 4 1079 2094 84777733 84776712 0.000000e+00 1583.0
5 TraesCS1B01G117500 chr1A 93.300 1403 69 15 709 2095 79106793 79108186 0.000000e+00 2047.0
6 TraesCS1B01G117500 chr1A 98.081 938 17 1 2096 3032 547919254 547920191 0.000000e+00 1631.0
7 TraesCS1B01G117500 chr1A 95.432 1007 44 1 1079 2085 78964413 78963409 0.000000e+00 1604.0
8 TraesCS1B01G117500 chr1A 83.770 382 33 12 312 677 79105423 79105791 4.840000e-88 335.0
9 TraesCS1B01G117500 chr1A 86.331 139 19 0 64 202 12581742 12581604 5.240000e-33 152.0
10 TraesCS1B01G117500 chr1A 96.491 57 2 0 1974 2030 79117024 79117080 8.950000e-16 95.3
11 TraesCS1B01G117500 chr1A 97.778 45 1 0 682 726 79106561 79106605 9.010000e-11 78.7
12 TraesCS1B01G117500 chr4A 98.197 943 16 1 2091 3032 613535313 613536255 0.000000e+00 1646.0
13 TraesCS1B01G117500 chr7A 97.974 938 18 1 2096 3032 657733119 657732182 0.000000e+00 1626.0
14 TraesCS1B01G117500 chr7A 100.000 28 0 0 1173 1200 637994598 637994625 5.000000e-03 52.8
15 TraesCS1B01G117500 chr7A 100.000 28 0 0 1173 1200 638132398 638132425 5.000000e-03 52.8
16 TraesCS1B01G117500 chr5A 95.546 943 11 5 2091 3032 445429032 445429944 0.000000e+00 1480.0
17 TraesCS1B01G117500 chr7B 92.269 802 42 5 2096 2891 744744467 744745254 0.000000e+00 1120.0
18 TraesCS1B01G117500 chr7B 92.241 116 9 0 2917 3032 744745238 744745353 6.720000e-37 165.0
19 TraesCS1B01G117500 chr7B 100.000 28 0 0 1173 1200 597453606 597453633 5.000000e-03 52.8
20 TraesCS1B01G117500 chr6D 82.838 303 47 5 1558 1857 414256658 414256358 1.790000e-67 267.0
21 TraesCS1B01G117500 chr6B 81.188 303 52 5 1558 1857 624312625 624312325 3.910000e-59 239.0
22 TraesCS1B01G117500 chr6A 81.126 302 54 3 1558 1857 559002658 559002358 3.910000e-59 239.0
23 TraesCS1B01G117500 chr6A 81.126 302 54 3 1558 1857 559132604 559132304 3.910000e-59 239.0
24 TraesCS1B01G117500 chr5B 89.231 65 4 2 2103 2165 426252760 426252697 9.010000e-11 78.7
25 TraesCS1B01G117500 chr7D 100.000 28 0 0 1173 1200 552325266 552325293 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G117500 chr1B 137554453 137557484 3031 False 5600.000000 5600 100.000 1 3032 1 chr1B.!!$F1 3031
1 TraesCS1B01G117500 chr1B 137453064 137454082 1018 True 1609.000000 1609 95.205 1079 2095 1 chr1B.!!$R1 1016
2 TraesCS1B01G117500 chr1D 84874682 84876451 1769 False 2296.000000 2296 90.033 288 2095 1 chr1D.!!$F1 1807
3 TraesCS1B01G117500 chr1D 84776712 84777733 1021 True 1583.000000 1583 94.716 1079 2094 1 chr1D.!!$R1 1015
4 TraesCS1B01G117500 chr1A 547919254 547920191 937 False 1631.000000 1631 98.081 2096 3032 1 chr1A.!!$F2 936
5 TraesCS1B01G117500 chr1A 78963409 78964413 1004 True 1604.000000 1604 95.432 1079 2085 1 chr1A.!!$R2 1006
6 TraesCS1B01G117500 chr1A 79105423 79108186 2763 False 820.233333 2047 91.616 312 2095 3 chr1A.!!$F3 1783
7 TraesCS1B01G117500 chr4A 613535313 613536255 942 False 1646.000000 1646 98.197 2091 3032 1 chr4A.!!$F1 941
8 TraesCS1B01G117500 chr7A 657732182 657733119 937 True 1626.000000 1626 97.974 2096 3032 1 chr7A.!!$R1 936
9 TraesCS1B01G117500 chr5A 445429032 445429944 912 False 1480.000000 1480 95.546 2091 3032 1 chr5A.!!$F1 941
10 TraesCS1B01G117500 chr7B 744744467 744745353 886 False 642.500000 1120 92.255 2096 3032 2 chr7B.!!$F2 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.037326 ACTCAAATTCGGAGCGAGCA 60.037 50.0 6.93 0.0 37.14 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 3100 0.392461 TAGCACCATCGCCCAGAAAC 60.392 55.0 0.0 0.0 0.0 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.628919 GTTACTGTTTAAGTGGACATTGGT 57.371 37.500 0.00 0.00 40.26 3.67
24 25 6.665465 GTTACTGTTTAAGTGGACATTGGTC 58.335 40.000 0.00 0.00 40.26 4.02
25 26 4.787551 ACTGTTTAAGTGGACATTGGTCA 58.212 39.130 0.00 0.00 46.17 4.02
26 27 4.821805 ACTGTTTAAGTGGACATTGGTCAG 59.178 41.667 0.00 0.00 46.17 3.51
27 28 3.568007 TGTTTAAGTGGACATTGGTCAGC 59.432 43.478 0.00 0.00 46.17 4.26
28 29 2.093306 TAAGTGGACATTGGTCAGCG 57.907 50.000 0.00 0.00 46.17 5.18
29 30 0.108585 AAGTGGACATTGGTCAGCGT 59.891 50.000 0.00 0.00 46.17 5.07
30 31 0.108585 AGTGGACATTGGTCAGCGTT 59.891 50.000 0.00 0.00 46.17 4.84
31 32 0.517316 GTGGACATTGGTCAGCGTTC 59.483 55.000 0.00 0.00 46.17 3.95
32 33 0.107643 TGGACATTGGTCAGCGTTCA 59.892 50.000 0.00 0.00 46.17 3.18
33 34 0.517316 GGACATTGGTCAGCGTTCAC 59.483 55.000 0.00 0.00 46.17 3.18
34 35 0.517316 GACATTGGTCAGCGTTCACC 59.483 55.000 0.00 0.00 43.73 4.02
35 36 1.227999 ACATTGGTCAGCGTTCACCG 61.228 55.000 0.00 0.00 35.15 4.94
36 37 1.671054 ATTGGTCAGCGTTCACCGG 60.671 57.895 0.00 0.00 35.15 5.28
38 39 2.737376 GGTCAGCGTTCACCGGTC 60.737 66.667 2.59 0.00 45.84 4.79
39 40 2.028484 GTCAGCGTTCACCGGTCA 59.972 61.111 2.59 0.00 45.84 4.02
40 41 2.028484 TCAGCGTTCACCGGTCAC 59.972 61.111 2.59 3.25 45.84 3.67
41 42 2.029073 CAGCGTTCACCGGTCACT 59.971 61.111 2.59 0.00 45.84 3.41
42 43 1.594293 CAGCGTTCACCGGTCACTT 60.594 57.895 2.59 0.00 45.84 3.16
43 44 0.319211 CAGCGTTCACCGGTCACTTA 60.319 55.000 2.59 0.00 45.84 2.24
44 45 0.606604 AGCGTTCACCGGTCACTTAT 59.393 50.000 2.59 0.00 45.84 1.73
45 46 0.719465 GCGTTCACCGGTCACTTATG 59.281 55.000 2.59 0.00 36.94 1.90
46 47 1.938016 GCGTTCACCGGTCACTTATGT 60.938 52.381 2.59 0.00 36.94 2.29
47 48 2.409975 CGTTCACCGGTCACTTATGTT 58.590 47.619 2.59 0.00 0.00 2.71
48 49 2.803956 CGTTCACCGGTCACTTATGTTT 59.196 45.455 2.59 0.00 0.00 2.83
49 50 3.989167 CGTTCACCGGTCACTTATGTTTA 59.011 43.478 2.59 0.00 0.00 2.01
50 51 4.448395 CGTTCACCGGTCACTTATGTTTAA 59.552 41.667 2.59 0.00 0.00 1.52
51 52 5.121142 CGTTCACCGGTCACTTATGTTTAAT 59.879 40.000 2.59 0.00 0.00 1.40
52 53 6.347888 CGTTCACCGGTCACTTATGTTTAATT 60.348 38.462 2.59 0.00 0.00 1.40
53 54 7.148606 CGTTCACCGGTCACTTATGTTTAATTA 60.149 37.037 2.59 0.00 0.00 1.40
54 55 8.505625 GTTCACCGGTCACTTATGTTTAATTAA 58.494 33.333 2.59 0.00 0.00 1.40
55 56 8.618702 TCACCGGTCACTTATGTTTAATTAAA 57.381 30.769 2.59 6.54 0.00 1.52
56 57 9.233649 TCACCGGTCACTTATGTTTAATTAAAT 57.766 29.630 2.59 1.99 0.00 1.40
57 58 9.849166 CACCGGTCACTTATGTTTAATTAAATT 57.151 29.630 2.59 7.55 0.00 1.82
58 59 9.849166 ACCGGTCACTTATGTTTAATTAAATTG 57.151 29.630 13.54 5.75 0.00 2.32
59 60 9.296400 CCGGTCACTTATGTTTAATTAAATTGG 57.704 33.333 13.54 6.04 0.00 3.16
60 61 9.296400 CGGTCACTTATGTTTAATTAAATTGGG 57.704 33.333 13.54 6.63 0.00 4.12
76 77 6.799926 AAATTGGGTCAAAAATGTGTATGC 57.200 33.333 0.00 0.00 0.00 3.14
77 78 3.951775 TGGGTCAAAAATGTGTATGCC 57.048 42.857 0.00 0.00 0.00 4.40
78 79 3.505386 TGGGTCAAAAATGTGTATGCCT 58.495 40.909 0.00 0.00 0.00 4.75
79 80 3.509575 TGGGTCAAAAATGTGTATGCCTC 59.490 43.478 0.00 0.00 0.00 4.70
80 81 3.119137 GGGTCAAAAATGTGTATGCCTCC 60.119 47.826 0.00 0.00 0.00 4.30
81 82 3.119137 GGTCAAAAATGTGTATGCCTCCC 60.119 47.826 0.00 0.00 0.00 4.30
82 83 2.752354 TCAAAAATGTGTATGCCTCCCG 59.248 45.455 0.00 0.00 0.00 5.14
83 84 2.491693 CAAAAATGTGTATGCCTCCCGT 59.508 45.455 0.00 0.00 0.00 5.28
84 85 2.507407 AAATGTGTATGCCTCCCGTT 57.493 45.000 0.00 0.00 0.00 4.44
85 86 3.637911 AAATGTGTATGCCTCCCGTTA 57.362 42.857 0.00 0.00 0.00 3.18
86 87 2.910688 ATGTGTATGCCTCCCGTTAG 57.089 50.000 0.00 0.00 0.00 2.34
87 88 1.855295 TGTGTATGCCTCCCGTTAGA 58.145 50.000 0.00 0.00 0.00 2.10
88 89 1.479323 TGTGTATGCCTCCCGTTAGAC 59.521 52.381 0.00 0.00 0.00 2.59
89 90 1.479323 GTGTATGCCTCCCGTTAGACA 59.521 52.381 0.00 0.00 0.00 3.41
90 91 1.479323 TGTATGCCTCCCGTTAGACAC 59.521 52.381 0.00 0.00 0.00 3.67
91 92 1.479323 GTATGCCTCCCGTTAGACACA 59.521 52.381 0.00 0.00 0.00 3.72
92 93 0.249398 ATGCCTCCCGTTAGACACAC 59.751 55.000 0.00 0.00 0.00 3.82
93 94 1.079336 GCCTCCCGTTAGACACACC 60.079 63.158 0.00 0.00 0.00 4.16
94 95 1.542187 GCCTCCCGTTAGACACACCT 61.542 60.000 0.00 0.00 0.00 4.00
95 96 0.246635 CCTCCCGTTAGACACACCTG 59.753 60.000 0.00 0.00 0.00 4.00
96 97 0.389948 CTCCCGTTAGACACACCTGC 60.390 60.000 0.00 0.00 0.00 4.85
97 98 1.375523 CCCGTTAGACACACCTGCC 60.376 63.158 0.00 0.00 0.00 4.85
98 99 1.736645 CCGTTAGACACACCTGCCG 60.737 63.158 0.00 0.00 0.00 5.69
99 100 1.287815 CGTTAGACACACCTGCCGA 59.712 57.895 0.00 0.00 0.00 5.54
100 101 1.007336 CGTTAGACACACCTGCCGAC 61.007 60.000 0.00 0.00 0.00 4.79
101 102 0.669625 GTTAGACACACCTGCCGACC 60.670 60.000 0.00 0.00 0.00 4.79
102 103 1.823169 TTAGACACACCTGCCGACCC 61.823 60.000 0.00 0.00 0.00 4.46
103 104 3.936203 GACACACCTGCCGACCCA 61.936 66.667 0.00 0.00 0.00 4.51
104 105 3.249189 ACACACCTGCCGACCCAT 61.249 61.111 0.00 0.00 0.00 4.00
105 106 1.895020 GACACACCTGCCGACCCATA 61.895 60.000 0.00 0.00 0.00 2.74
106 107 1.271840 ACACACCTGCCGACCCATAT 61.272 55.000 0.00 0.00 0.00 1.78
107 108 0.532862 CACACCTGCCGACCCATATC 60.533 60.000 0.00 0.00 0.00 1.63
108 109 1.300931 CACCTGCCGACCCATATCG 60.301 63.158 0.00 0.00 41.89 2.92
109 110 1.456892 ACCTGCCGACCCATATCGA 60.457 57.895 0.00 0.00 45.13 3.59
110 111 1.046472 ACCTGCCGACCCATATCGAA 61.046 55.000 0.00 0.00 45.13 3.71
111 112 0.105964 CCTGCCGACCCATATCGAAA 59.894 55.000 0.00 0.00 45.13 3.46
112 113 1.474320 CCTGCCGACCCATATCGAAAA 60.474 52.381 0.00 0.00 45.13 2.29
113 114 1.867233 CTGCCGACCCATATCGAAAAG 59.133 52.381 0.00 0.00 45.13 2.27
114 115 0.586802 GCCGACCCATATCGAAAAGC 59.413 55.000 0.00 0.00 45.13 3.51
115 116 0.859232 CCGACCCATATCGAAAAGCG 59.141 55.000 0.00 0.00 45.13 4.68
116 117 0.859232 CGACCCATATCGAAAAGCGG 59.141 55.000 0.00 0.00 45.13 5.52
117 118 1.537348 CGACCCATATCGAAAAGCGGA 60.537 52.381 0.00 0.00 45.13 5.54
118 119 1.865340 GACCCATATCGAAAAGCGGAC 59.135 52.381 0.00 0.00 41.33 4.79
119 120 0.859232 CCCATATCGAAAAGCGGACG 59.141 55.000 0.00 0.00 41.33 4.79
120 121 0.232303 CCATATCGAAAAGCGGACGC 59.768 55.000 8.91 8.91 41.33 5.19
135 136 2.572647 CGCGTACGTCCGTCTGAC 60.573 66.667 17.90 0.00 40.81 3.51
136 137 2.202401 GCGTACGTCCGTCTGACC 60.202 66.667 17.90 0.00 41.18 4.02
137 138 2.097160 CGTACGTCCGTCTGACCG 59.903 66.667 7.22 2.88 41.18 4.79
138 139 2.382746 CGTACGTCCGTCTGACCGA 61.383 63.158 7.22 3.61 41.18 4.69
139 140 1.133458 GTACGTCCGTCTGACCGAC 59.867 63.158 16.15 16.15 41.18 4.79
140 141 2.034879 TACGTCCGTCTGACCGACC 61.035 63.158 18.96 6.31 41.18 4.79
141 142 4.112341 CGTCCGTCTGACCGACCC 62.112 72.222 18.96 1.55 41.18 4.46
142 143 2.987547 GTCCGTCTGACCGACCCA 60.988 66.667 15.50 0.00 39.56 4.51
143 144 2.203523 TCCGTCTGACCGACCCAA 60.204 61.111 1.55 0.00 39.56 4.12
144 145 1.833492 TCCGTCTGACCGACCCAAA 60.833 57.895 1.55 0.00 39.56 3.28
145 146 1.666872 CCGTCTGACCGACCCAAAC 60.667 63.158 1.55 0.00 39.56 2.93
146 147 2.019951 CGTCTGACCGACCCAAACG 61.020 63.158 1.55 0.00 39.56 3.60
147 148 1.364901 GTCTGACCGACCCAAACGA 59.635 57.895 0.00 0.00 36.62 3.85
148 149 0.249573 GTCTGACCGACCCAAACGAA 60.250 55.000 0.00 0.00 36.62 3.85
149 150 0.249573 TCTGACCGACCCAAACGAAC 60.250 55.000 0.00 0.00 0.00 3.95
150 151 1.554042 CTGACCGACCCAAACGAACG 61.554 60.000 0.00 0.00 0.00 3.95
151 152 1.300080 GACCGACCCAAACGAACGA 60.300 57.895 0.14 0.00 0.00 3.85
152 153 0.875474 GACCGACCCAAACGAACGAA 60.875 55.000 0.14 0.00 0.00 3.85
153 154 0.461693 ACCGACCCAAACGAACGAAA 60.462 50.000 0.14 0.00 0.00 3.46
154 155 0.656785 CCGACCCAAACGAACGAAAA 59.343 50.000 0.14 0.00 0.00 2.29
155 156 1.063764 CCGACCCAAACGAACGAAAAA 59.936 47.619 0.14 0.00 0.00 1.94
156 157 2.103388 CGACCCAAACGAACGAAAAAC 58.897 47.619 0.14 0.00 0.00 2.43
157 158 2.475852 CGACCCAAACGAACGAAAAACA 60.476 45.455 0.14 0.00 0.00 2.83
158 159 3.103007 GACCCAAACGAACGAAAAACAG 58.897 45.455 0.14 0.00 0.00 3.16
159 160 2.748532 ACCCAAACGAACGAAAAACAGA 59.251 40.909 0.14 0.00 0.00 3.41
160 161 3.379057 ACCCAAACGAACGAAAAACAGAT 59.621 39.130 0.14 0.00 0.00 2.90
161 162 4.575645 ACCCAAACGAACGAAAAACAGATA 59.424 37.500 0.14 0.00 0.00 1.98
162 163 5.066246 ACCCAAACGAACGAAAAACAGATAA 59.934 36.000 0.14 0.00 0.00 1.75
163 164 5.972382 CCCAAACGAACGAAAAACAGATAAA 59.028 36.000 0.14 0.00 0.00 1.40
164 165 6.141685 CCCAAACGAACGAAAAACAGATAAAG 59.858 38.462 0.14 0.00 0.00 1.85
165 166 6.689669 CCAAACGAACGAAAAACAGATAAAGT 59.310 34.615 0.14 0.00 0.00 2.66
166 167 7.305190 CCAAACGAACGAAAAACAGATAAAGTG 60.305 37.037 0.14 0.00 0.00 3.16
167 168 5.202640 ACGAACGAAAAACAGATAAAGTGC 58.797 37.500 0.14 0.00 0.00 4.40
168 169 4.314708 CGAACGAAAAACAGATAAAGTGCG 59.685 41.667 0.00 0.00 0.00 5.34
169 170 3.551551 ACGAAAAACAGATAAAGTGCGC 58.448 40.909 0.00 0.00 0.00 6.09
170 171 2.583801 CGAAAAACAGATAAAGTGCGCG 59.416 45.455 0.00 0.00 0.00 6.86
171 172 3.551551 GAAAAACAGATAAAGTGCGCGT 58.448 40.909 8.43 0.00 0.00 6.01
172 173 2.875080 AAACAGATAAAGTGCGCGTC 57.125 45.000 8.43 0.00 0.00 5.19
173 174 1.076332 AACAGATAAAGTGCGCGTCC 58.924 50.000 8.43 0.00 0.00 4.79
174 175 1.076533 ACAGATAAAGTGCGCGTCCG 61.077 55.000 8.43 0.00 37.57 4.79
175 176 1.076533 CAGATAAAGTGCGCGTCCGT 61.077 55.000 8.43 0.00 36.67 4.69
176 177 0.389426 AGATAAAGTGCGCGTCCGTT 60.389 50.000 8.43 5.78 36.67 4.44
177 178 0.441145 GATAAAGTGCGCGTCCGTTT 59.559 50.000 8.43 5.57 36.67 3.60
178 179 0.165079 ATAAAGTGCGCGTCCGTTTG 59.835 50.000 8.43 0.00 36.67 2.93
179 180 0.875040 TAAAGTGCGCGTCCGTTTGA 60.875 50.000 8.43 0.00 36.67 2.69
180 181 2.369477 AAAGTGCGCGTCCGTTTGAC 62.369 55.000 8.43 0.00 40.81 3.18
181 182 3.335534 GTGCGCGTCCGTTTGACT 61.336 61.111 8.43 0.00 42.13 3.41
182 183 3.033764 TGCGCGTCCGTTTGACTC 61.034 61.111 8.43 0.00 42.13 3.36
184 185 3.467119 CGCGTCCGTTTGACTCGG 61.467 66.667 0.00 0.00 45.89 4.63
185 186 3.774702 GCGTCCGTTTGACTCGGC 61.775 66.667 0.00 0.00 46.49 5.54
186 187 3.467119 CGTCCGTTTGACTCGGCG 61.467 66.667 0.00 0.00 46.49 6.46
187 188 2.355481 GTCCGTTTGACTCGGCGT 60.355 61.111 6.85 0.00 46.49 5.68
188 189 2.355363 TCCGTTTGACTCGGCGTG 60.355 61.111 6.85 7.20 46.49 5.34
189 190 2.660552 CCGTTTGACTCGGCGTGT 60.661 61.111 15.06 15.06 41.48 4.49
190 191 2.241880 CCGTTTGACTCGGCGTGTT 61.242 57.895 16.24 0.00 41.48 3.32
191 192 1.083657 CGTTTGACTCGGCGTGTTG 60.084 57.895 16.24 3.45 0.00 3.33
192 193 1.278637 GTTTGACTCGGCGTGTTGG 59.721 57.895 16.24 1.03 0.00 3.77
193 194 1.144276 TTTGACTCGGCGTGTTGGA 59.856 52.632 16.24 2.80 0.00 3.53
194 195 0.878523 TTTGACTCGGCGTGTTGGAG 60.879 55.000 16.24 2.57 0.00 3.86
195 196 2.023414 TTGACTCGGCGTGTTGGAGT 62.023 55.000 16.24 6.20 43.32 3.85
196 197 1.300697 GACTCGGCGTGTTGGAGTT 60.301 57.895 16.24 0.00 40.88 3.01
197 198 0.878961 GACTCGGCGTGTTGGAGTTT 60.879 55.000 16.24 0.00 40.88 2.66
198 199 0.878961 ACTCGGCGTGTTGGAGTTTC 60.879 55.000 9.03 0.00 37.76 2.78
199 200 0.600255 CTCGGCGTGTTGGAGTTTCT 60.600 55.000 6.85 0.00 0.00 2.52
200 201 0.599204 TCGGCGTGTTGGAGTTTCTC 60.599 55.000 6.85 0.00 0.00 2.87
201 202 0.600255 CGGCGTGTTGGAGTTTCTCT 60.600 55.000 0.00 0.00 0.00 3.10
202 203 1.149148 GGCGTGTTGGAGTTTCTCTC 58.851 55.000 0.00 0.00 42.07 3.20
213 214 4.846779 GAGTTTCTCTCCTATCTCGCAT 57.153 45.455 0.00 0.00 37.22 4.73
214 215 4.794169 GAGTTTCTCTCCTATCTCGCATC 58.206 47.826 0.00 0.00 37.22 3.91
215 216 4.211125 AGTTTCTCTCCTATCTCGCATCA 58.789 43.478 0.00 0.00 0.00 3.07
216 217 4.832266 AGTTTCTCTCCTATCTCGCATCAT 59.168 41.667 0.00 0.00 0.00 2.45
217 218 5.048083 AGTTTCTCTCCTATCTCGCATCATC 60.048 44.000 0.00 0.00 0.00 2.92
218 219 4.026356 TCTCTCCTATCTCGCATCATCA 57.974 45.455 0.00 0.00 0.00 3.07
219 220 4.598022 TCTCTCCTATCTCGCATCATCAT 58.402 43.478 0.00 0.00 0.00 2.45
220 221 4.639755 TCTCTCCTATCTCGCATCATCATC 59.360 45.833 0.00 0.00 0.00 2.92
221 222 4.598022 TCTCCTATCTCGCATCATCATCT 58.402 43.478 0.00 0.00 0.00 2.90
222 223 5.749462 TCTCCTATCTCGCATCATCATCTA 58.251 41.667 0.00 0.00 0.00 1.98
223 224 5.588246 TCTCCTATCTCGCATCATCATCTAC 59.412 44.000 0.00 0.00 0.00 2.59
224 225 4.642437 TCCTATCTCGCATCATCATCTACC 59.358 45.833 0.00 0.00 0.00 3.18
225 226 4.644234 CCTATCTCGCATCATCATCTACCT 59.356 45.833 0.00 0.00 0.00 3.08
226 227 5.126869 CCTATCTCGCATCATCATCTACCTT 59.873 44.000 0.00 0.00 0.00 3.50
227 228 6.319911 CCTATCTCGCATCATCATCTACCTTA 59.680 42.308 0.00 0.00 0.00 2.69
228 229 5.635417 TCTCGCATCATCATCTACCTTAG 57.365 43.478 0.00 0.00 0.00 2.18
229 230 5.316987 TCTCGCATCATCATCTACCTTAGA 58.683 41.667 0.00 0.00 39.50 2.10
230 231 5.770162 TCTCGCATCATCATCTACCTTAGAA 59.230 40.000 0.00 0.00 38.50 2.10
231 232 5.773575 TCGCATCATCATCTACCTTAGAAC 58.226 41.667 0.00 0.00 38.50 3.01
232 233 4.926238 CGCATCATCATCTACCTTAGAACC 59.074 45.833 0.00 0.00 38.50 3.62
233 234 5.241662 GCATCATCATCTACCTTAGAACCC 58.758 45.833 0.00 0.00 38.50 4.11
234 235 5.012561 GCATCATCATCTACCTTAGAACCCT 59.987 44.000 0.00 0.00 38.50 4.34
235 236 6.211584 GCATCATCATCTACCTTAGAACCCTA 59.788 42.308 0.00 0.00 38.50 3.53
236 237 7.578571 GCATCATCATCTACCTTAGAACCCTAG 60.579 44.444 0.00 0.00 38.50 3.02
237 238 5.775701 TCATCATCTACCTTAGAACCCTAGC 59.224 44.000 0.00 0.00 38.50 3.42
238 239 5.405063 TCATCTACCTTAGAACCCTAGCT 57.595 43.478 0.00 0.00 38.50 3.32
239 240 6.526056 TCATCTACCTTAGAACCCTAGCTA 57.474 41.667 0.00 0.00 38.50 3.32
240 241 6.544650 TCATCTACCTTAGAACCCTAGCTAG 58.455 44.000 14.20 14.20 38.50 3.42
241 242 4.727677 TCTACCTTAGAACCCTAGCTAGC 58.272 47.826 15.74 6.62 0.00 3.42
242 243 3.691698 ACCTTAGAACCCTAGCTAGCT 57.308 47.619 23.12 23.12 0.00 3.32
243 244 3.996957 ACCTTAGAACCCTAGCTAGCTT 58.003 45.455 24.88 3.54 0.00 3.74
244 245 3.962063 ACCTTAGAACCCTAGCTAGCTTC 59.038 47.826 24.88 13.98 0.00 3.86
245 246 3.322541 CCTTAGAACCCTAGCTAGCTTCC 59.677 52.174 24.88 6.12 0.00 3.46
246 247 2.552093 AGAACCCTAGCTAGCTTCCA 57.448 50.000 24.88 3.66 0.00 3.53
247 248 2.112190 AGAACCCTAGCTAGCTTCCAC 58.888 52.381 24.88 10.00 0.00 4.02
248 249 1.831736 GAACCCTAGCTAGCTTCCACA 59.168 52.381 24.88 2.79 0.00 4.17
249 250 1.952621 ACCCTAGCTAGCTTCCACAA 58.047 50.000 24.88 1.94 0.00 3.33
250 251 1.555533 ACCCTAGCTAGCTTCCACAAC 59.444 52.381 24.88 0.00 0.00 3.32
251 252 1.834263 CCCTAGCTAGCTTCCACAACT 59.166 52.381 24.88 0.00 0.00 3.16
252 253 2.159028 CCCTAGCTAGCTTCCACAACTC 60.159 54.545 24.88 0.00 0.00 3.01
253 254 2.497675 CCTAGCTAGCTTCCACAACTCA 59.502 50.000 24.88 0.00 0.00 3.41
254 255 3.055819 CCTAGCTAGCTTCCACAACTCAA 60.056 47.826 24.88 0.00 0.00 3.02
255 256 3.492102 AGCTAGCTTCCACAACTCAAA 57.508 42.857 12.68 0.00 0.00 2.69
256 257 4.026356 AGCTAGCTTCCACAACTCAAAT 57.974 40.909 12.68 0.00 0.00 2.32
257 258 4.401925 AGCTAGCTTCCACAACTCAAATT 58.598 39.130 12.68 0.00 0.00 1.82
258 259 4.457257 AGCTAGCTTCCACAACTCAAATTC 59.543 41.667 12.68 0.00 0.00 2.17
259 260 3.904136 AGCTTCCACAACTCAAATTCG 57.096 42.857 0.00 0.00 0.00 3.34
260 261 2.554032 AGCTTCCACAACTCAAATTCGG 59.446 45.455 0.00 0.00 0.00 4.30
261 262 2.552315 GCTTCCACAACTCAAATTCGGA 59.448 45.455 0.00 0.00 0.00 4.55
262 263 3.365364 GCTTCCACAACTCAAATTCGGAG 60.365 47.826 5.74 5.74 38.36 4.63
263 264 2.151202 TCCACAACTCAAATTCGGAGC 58.849 47.619 6.93 0.00 35.79 4.70
264 265 1.135972 CCACAACTCAAATTCGGAGCG 60.136 52.381 6.93 2.60 35.79 5.03
265 266 1.798223 CACAACTCAAATTCGGAGCGA 59.202 47.619 6.93 0.00 35.79 4.93
266 267 2.069273 ACAACTCAAATTCGGAGCGAG 58.931 47.619 6.93 0.00 37.14 5.03
267 268 1.079503 AACTCAAATTCGGAGCGAGC 58.920 50.000 6.93 0.00 37.14 5.03
268 269 0.037326 ACTCAAATTCGGAGCGAGCA 60.037 50.000 6.93 0.00 37.14 4.26
269 270 1.293924 CTCAAATTCGGAGCGAGCAT 58.706 50.000 0.00 0.00 37.14 3.79
270 271 1.260033 CTCAAATTCGGAGCGAGCATC 59.740 52.381 0.00 0.00 37.14 3.91
271 272 0.305922 CAAATTCGGAGCGAGCATCC 59.694 55.000 0.00 1.04 37.14 3.51
272 273 0.107703 AAATTCGGAGCGAGCATCCA 60.108 50.000 11.88 0.00 37.14 3.41
273 274 0.811616 AATTCGGAGCGAGCATCCAC 60.812 55.000 11.88 0.00 37.14 4.02
274 275 2.650813 ATTCGGAGCGAGCATCCACC 62.651 60.000 11.88 0.00 37.14 4.61
275 276 3.842923 CGGAGCGAGCATCCACCT 61.843 66.667 11.88 0.00 36.57 4.00
276 277 2.586792 GGAGCGAGCATCCACCTT 59.413 61.111 0.00 0.00 36.79 3.50
277 278 1.823295 GGAGCGAGCATCCACCTTA 59.177 57.895 0.00 0.00 36.79 2.69
278 279 0.530870 GGAGCGAGCATCCACCTTAC 60.531 60.000 0.00 0.00 36.79 2.34
279 280 0.175760 GAGCGAGCATCCACCTTACA 59.824 55.000 0.00 0.00 0.00 2.41
280 281 0.613260 AGCGAGCATCCACCTTACAA 59.387 50.000 0.00 0.00 0.00 2.41
281 282 1.210478 AGCGAGCATCCACCTTACAAT 59.790 47.619 0.00 0.00 0.00 2.71
282 283 1.331756 GCGAGCATCCACCTTACAATG 59.668 52.381 0.00 0.00 0.00 2.82
283 284 1.942657 CGAGCATCCACCTTACAATGG 59.057 52.381 0.00 0.00 37.32 3.16
297 298 5.124457 CCTTACAATGGAACTGTTCATGAGG 59.876 44.000 21.01 14.68 0.00 3.86
299 300 5.241403 ACAATGGAACTGTTCATGAGGTA 57.759 39.130 21.01 0.39 0.00 3.08
306 307 5.763204 GGAACTGTTCATGAGGTACTTTTGA 59.237 40.000 21.01 0.00 41.55 2.69
310 311 5.789521 TGTTCATGAGGTACTTTTGATCGA 58.210 37.500 0.00 0.00 41.55 3.59
315 316 7.552459 TCATGAGGTACTTTTGATCGATTGTA 58.448 34.615 0.00 0.00 41.55 2.41
331 332 7.355332 TCGATTGTAAGCATATCATGATGTG 57.645 36.000 23.87 23.87 33.70 3.21
337 338 8.091385 TGTAAGCATATCATGATGTGATCAAC 57.909 34.615 30.12 24.37 44.23 3.18
341 342 7.423199 AGCATATCATGATGTGATCAACAAAC 58.577 34.615 30.12 12.83 44.23 2.93
356 357 0.389948 CAAACCTCCCTCGTTCTCCG 60.390 60.000 0.00 0.00 38.13 4.63
357 358 1.542187 AAACCTCCCTCGTTCTCCGG 61.542 60.000 0.00 0.00 37.11 5.14
358 359 2.044252 CCTCCCTCGTTCTCCGGA 60.044 66.667 2.93 2.93 37.11 5.14
360 361 1.255667 CCTCCCTCGTTCTCCGGAAA 61.256 60.000 5.23 0.00 37.11 3.13
363 364 1.626825 TCCCTCGTTCTCCGGAAAAAT 59.373 47.619 5.23 0.00 37.11 1.82
365 366 3.261390 TCCCTCGTTCTCCGGAAAAATAA 59.739 43.478 5.23 0.00 37.11 1.40
366 367 4.004982 CCCTCGTTCTCCGGAAAAATAAA 58.995 43.478 5.23 0.00 37.11 1.40
367 368 4.456566 CCCTCGTTCTCCGGAAAAATAAAA 59.543 41.667 5.23 0.00 37.11 1.52
368 369 5.124936 CCCTCGTTCTCCGGAAAAATAAAAT 59.875 40.000 5.23 0.00 37.11 1.82
369 370 6.255950 CCTCGTTCTCCGGAAAAATAAAATC 58.744 40.000 5.23 0.00 37.11 2.17
408 409 7.606456 GGATAAACTTGAGATCAACTGGTTACA 59.394 37.037 0.00 0.00 0.00 2.41
432 433 4.917415 CGTCAAATCGGCTGAAAAATCTTT 59.083 37.500 0.00 0.00 0.00 2.52
546 553 5.473504 CCATATAACCATTGGCCTAACAGTC 59.526 44.000 3.32 0.00 0.00 3.51
568 575 6.271159 AGTCTCCCTTTTTCAGTACTTCTCAT 59.729 38.462 0.00 0.00 0.00 2.90
586 601 9.355215 ACTTCTCATGTAGTACGTTTTATTCAG 57.645 33.333 0.00 0.00 0.00 3.02
587 602 9.569167 CTTCTCATGTAGTACGTTTTATTCAGA 57.431 33.333 0.00 0.00 0.00 3.27
632 647 9.569167 TTTATGTTTGACTTCTCATCTAGTACG 57.431 33.333 0.00 0.00 0.00 3.67
633 648 6.570672 TGTTTGACTTCTCATCTAGTACGT 57.429 37.500 0.00 0.00 0.00 3.57
635 650 7.431249 TGTTTGACTTCTCATCTAGTACGTTT 58.569 34.615 0.00 0.00 0.00 3.60
637 652 9.403110 GTTTGACTTCTCATCTAGTACGTTTTA 57.597 33.333 0.00 0.00 0.00 1.52
766 1751 0.536260 CCTCAGTCAAGGCTCCTCTG 59.464 60.000 0.00 0.00 0.00 3.35
795 1780 5.293324 TGTGATGTCAGTTAACAAGTCACAC 59.707 40.000 19.25 15.98 41.08 3.82
992 1979 2.437716 GTACCATGGCCACCCACG 60.438 66.667 8.16 0.00 45.77 4.94
1023 2010 1.065199 TCATCCCATCACCTGCACTTC 60.065 52.381 0.00 0.00 0.00 3.01
1024 2011 0.107508 ATCCCATCACCTGCACTTCG 60.108 55.000 0.00 0.00 0.00 3.79
1025 2012 2.401766 CCCATCACCTGCACTTCGC 61.402 63.158 0.00 0.00 42.89 4.70
1027 2014 0.108186 CCATCACCTGCACTTCGCTA 60.108 55.000 0.00 0.00 43.06 4.26
1028 2015 1.284657 CATCACCTGCACTTCGCTAG 58.715 55.000 0.00 0.00 43.06 3.42
1029 2016 0.898320 ATCACCTGCACTTCGCTAGT 59.102 50.000 0.00 0.00 43.06 2.57
1030 2017 1.541379 TCACCTGCACTTCGCTAGTA 58.459 50.000 0.00 0.00 43.06 1.82
1031 2018 1.201647 TCACCTGCACTTCGCTAGTAC 59.798 52.381 0.00 0.00 43.06 2.73
1033 2020 1.825474 ACCTGCACTTCGCTAGTACAT 59.175 47.619 0.00 0.00 43.06 2.29
1034 2021 2.159226 ACCTGCACTTCGCTAGTACATC 60.159 50.000 0.00 0.00 43.06 3.06
1039 2031 3.179830 CACTTCGCTAGTACATCCACAC 58.820 50.000 0.00 0.00 34.56 3.82
1040 2032 2.823747 ACTTCGCTAGTACATCCACACA 59.176 45.455 0.00 0.00 34.56 3.72
1043 2035 2.559231 TCGCTAGTACATCCACACAACA 59.441 45.455 0.00 0.00 0.00 3.33
1044 2036 2.666508 CGCTAGTACATCCACACAACAC 59.333 50.000 0.00 0.00 0.00 3.32
1048 2040 2.438021 AGTACATCCACACAACACCACT 59.562 45.455 0.00 0.00 0.00 4.00
1075 2067 4.759183 GTCTGAAACTCTGAAAAGGCTCAT 59.241 41.667 0.00 0.00 0.00 2.90
1115 2115 2.354203 GGTGATCGACTTCTCCAAGCTT 60.354 50.000 0.00 0.00 32.09 3.74
1205 2205 2.351276 GTGAACCACGGCATCCCT 59.649 61.111 0.00 0.00 0.00 4.20
1304 2304 2.640302 GGTGCAGACGCTGGAGAGA 61.640 63.158 8.57 0.00 39.64 3.10
1313 2313 1.594310 GCTGGAGAGACTGGTGGAC 59.406 63.158 0.00 0.00 0.00 4.02
1433 2433 0.036010 CCTTCAAGGAGACCATGCGT 60.036 55.000 0.00 0.00 37.67 5.24
1859 2859 0.604511 CCTTCTACAACCCGGCGTTT 60.605 55.000 6.01 0.00 29.93 3.60
1959 2959 4.257731 TGTGTACAACAAGCAGAAGTTCA 58.742 39.130 5.50 0.00 35.24 3.18
2030 3037 7.905493 GCTTAAGCTTAATATCATGGCGATTAC 59.095 37.037 20.38 0.00 38.21 1.89
2035 3043 6.669977 GCTTAATATCATGGCGATTACACGAC 60.670 42.308 0.00 0.00 42.12 4.34
2353 3368 8.800332 CCCAATAATCCTGATTTATTCTTCCTG 58.200 37.037 0.00 0.00 32.50 3.86
2357 3372 6.581388 ATCCTGATTTATTCTTCCTGGTGA 57.419 37.500 0.00 0.00 0.00 4.02
2939 3958 7.066887 TGCATGTTTTCGGATACAAACATATCT 59.933 33.333 15.25 0.00 32.91 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.261381 TGACCAATGTCCACTTAAACAGTAAC 59.739 38.462 0.00 0.00 41.01 2.50
2 3 5.931294 TGACCAATGTCCACTTAAACAGTA 58.069 37.500 0.00 0.00 41.01 2.74
3 4 4.787551 TGACCAATGTCCACTTAAACAGT 58.212 39.130 0.00 0.00 41.01 3.55
4 5 4.320494 GCTGACCAATGTCCACTTAAACAG 60.320 45.833 0.00 0.00 41.01 3.16
5 6 3.568007 GCTGACCAATGTCCACTTAAACA 59.432 43.478 0.00 0.00 41.01 2.83
6 7 3.364964 CGCTGACCAATGTCCACTTAAAC 60.365 47.826 0.00 0.00 41.01 2.01
7 8 2.811431 CGCTGACCAATGTCCACTTAAA 59.189 45.455 0.00 0.00 41.01 1.52
8 9 2.224426 ACGCTGACCAATGTCCACTTAA 60.224 45.455 0.00 0.00 41.01 1.85
9 10 1.346395 ACGCTGACCAATGTCCACTTA 59.654 47.619 0.00 0.00 41.01 2.24
10 11 0.108585 ACGCTGACCAATGTCCACTT 59.891 50.000 0.00 0.00 41.01 3.16
11 12 0.108585 AACGCTGACCAATGTCCACT 59.891 50.000 0.00 0.00 41.01 4.00
12 13 0.517316 GAACGCTGACCAATGTCCAC 59.483 55.000 0.00 0.00 41.01 4.02
13 14 0.107643 TGAACGCTGACCAATGTCCA 59.892 50.000 0.00 0.00 41.01 4.02
14 15 0.517316 GTGAACGCTGACCAATGTCC 59.483 55.000 0.00 0.00 41.01 4.02
15 16 0.517316 GGTGAACGCTGACCAATGTC 59.483 55.000 0.00 0.00 42.12 3.06
16 17 1.227999 CGGTGAACGCTGACCAATGT 61.228 55.000 0.00 0.00 34.82 2.71
17 18 1.497278 CGGTGAACGCTGACCAATG 59.503 57.895 0.00 0.00 34.82 2.82
18 19 1.671054 CCGGTGAACGCTGACCAAT 60.671 57.895 0.00 0.00 42.52 3.16
19 20 2.280524 CCGGTGAACGCTGACCAA 60.281 61.111 0.00 0.00 42.52 3.67
20 21 3.509137 GACCGGTGAACGCTGACCA 62.509 63.158 14.63 0.00 42.52 4.02
21 22 2.737376 GACCGGTGAACGCTGACC 60.737 66.667 14.63 0.00 42.52 4.02
22 23 2.028484 TGACCGGTGAACGCTGAC 59.972 61.111 14.63 0.00 42.52 3.51
23 24 2.023414 AAGTGACCGGTGAACGCTGA 62.023 55.000 14.63 0.00 42.52 4.26
24 25 0.319211 TAAGTGACCGGTGAACGCTG 60.319 55.000 14.63 0.00 42.52 5.18
25 26 0.606604 ATAAGTGACCGGTGAACGCT 59.393 50.000 14.63 6.98 42.52 5.07
26 27 0.719465 CATAAGTGACCGGTGAACGC 59.281 55.000 14.63 4.07 42.52 4.84
27 28 2.074547 ACATAAGTGACCGGTGAACG 57.925 50.000 14.63 0.00 43.80 3.95
28 29 5.927954 TTAAACATAAGTGACCGGTGAAC 57.072 39.130 14.63 10.86 0.00 3.18
29 30 8.618702 TTAATTAAACATAAGTGACCGGTGAA 57.381 30.769 14.63 0.00 0.00 3.18
30 31 8.618702 TTTAATTAAACATAAGTGACCGGTGA 57.381 30.769 14.63 0.00 0.00 4.02
31 32 9.849166 AATTTAATTAAACATAAGTGACCGGTG 57.151 29.630 14.63 0.00 0.00 4.94
32 33 9.849166 CAATTTAATTAAACATAAGTGACCGGT 57.151 29.630 6.92 6.92 0.00 5.28
33 34 9.296400 CCAATTTAATTAAACATAAGTGACCGG 57.704 33.333 12.74 0.00 0.00 5.28
34 35 9.296400 CCCAATTTAATTAAACATAAGTGACCG 57.704 33.333 12.74 0.00 0.00 4.79
50 51 8.945057 GCATACACATTTTTGACCCAATTTAAT 58.055 29.630 0.00 0.00 0.00 1.40
51 52 7.389053 GGCATACACATTTTTGACCCAATTTAA 59.611 33.333 0.00 0.00 0.00 1.52
52 53 6.876257 GGCATACACATTTTTGACCCAATTTA 59.124 34.615 0.00 0.00 0.00 1.40
53 54 5.704978 GGCATACACATTTTTGACCCAATTT 59.295 36.000 0.00 0.00 0.00 1.82
54 55 5.012975 AGGCATACACATTTTTGACCCAATT 59.987 36.000 0.00 0.00 0.00 2.32
55 56 4.531732 AGGCATACACATTTTTGACCCAAT 59.468 37.500 0.00 0.00 0.00 3.16
56 57 3.900601 AGGCATACACATTTTTGACCCAA 59.099 39.130 0.00 0.00 0.00 4.12
57 58 3.505386 AGGCATACACATTTTTGACCCA 58.495 40.909 0.00 0.00 0.00 4.51
58 59 3.119137 GGAGGCATACACATTTTTGACCC 60.119 47.826 0.00 0.00 0.00 4.46
59 60 3.119137 GGGAGGCATACACATTTTTGACC 60.119 47.826 0.00 0.00 0.00 4.02
60 61 3.427503 CGGGAGGCATACACATTTTTGAC 60.428 47.826 0.00 0.00 0.00 3.18
61 62 2.752354 CGGGAGGCATACACATTTTTGA 59.248 45.455 0.00 0.00 0.00 2.69
62 63 2.491693 ACGGGAGGCATACACATTTTTG 59.508 45.455 0.00 0.00 0.00 2.44
63 64 2.802719 ACGGGAGGCATACACATTTTT 58.197 42.857 0.00 0.00 0.00 1.94
64 65 2.507407 ACGGGAGGCATACACATTTT 57.493 45.000 0.00 0.00 0.00 1.82
65 66 2.507407 AACGGGAGGCATACACATTT 57.493 45.000 0.00 0.00 0.00 2.32
66 67 2.769663 TCTAACGGGAGGCATACACATT 59.230 45.455 0.00 0.00 0.00 2.71
67 68 2.102588 GTCTAACGGGAGGCATACACAT 59.897 50.000 0.00 0.00 0.00 3.21
68 69 1.479323 GTCTAACGGGAGGCATACACA 59.521 52.381 0.00 0.00 0.00 3.72
69 70 1.479323 TGTCTAACGGGAGGCATACAC 59.521 52.381 0.00 0.00 0.00 2.90
70 71 1.479323 GTGTCTAACGGGAGGCATACA 59.521 52.381 0.00 0.00 32.67 2.29
71 72 1.479323 TGTGTCTAACGGGAGGCATAC 59.521 52.381 0.00 0.00 32.67 2.39
72 73 1.479323 GTGTGTCTAACGGGAGGCATA 59.521 52.381 0.00 0.00 32.67 3.14
73 74 0.249398 GTGTGTCTAACGGGAGGCAT 59.751 55.000 0.00 0.00 32.67 4.40
74 75 1.669440 GTGTGTCTAACGGGAGGCA 59.331 57.895 0.00 0.00 0.00 4.75
75 76 1.079336 GGTGTGTCTAACGGGAGGC 60.079 63.158 0.00 0.00 0.00 4.70
76 77 0.246635 CAGGTGTGTCTAACGGGAGG 59.753 60.000 0.00 0.00 0.00 4.30
77 78 0.389948 GCAGGTGTGTCTAACGGGAG 60.390 60.000 0.00 0.00 0.00 4.30
78 79 1.669440 GCAGGTGTGTCTAACGGGA 59.331 57.895 0.00 0.00 0.00 5.14
79 80 1.375523 GGCAGGTGTGTCTAACGGG 60.376 63.158 0.00 0.00 0.00 5.28
80 81 1.736645 CGGCAGGTGTGTCTAACGG 60.737 63.158 0.00 0.00 0.00 4.44
81 82 1.007336 GTCGGCAGGTGTGTCTAACG 61.007 60.000 0.00 0.00 0.00 3.18
82 83 0.669625 GGTCGGCAGGTGTGTCTAAC 60.670 60.000 0.00 0.00 0.00 2.34
83 84 1.669440 GGTCGGCAGGTGTGTCTAA 59.331 57.895 0.00 0.00 0.00 2.10
84 85 2.280552 GGGTCGGCAGGTGTGTCTA 61.281 63.158 0.00 0.00 0.00 2.59
85 86 3.626924 GGGTCGGCAGGTGTGTCT 61.627 66.667 0.00 0.00 0.00 3.41
86 87 1.895020 TATGGGTCGGCAGGTGTGTC 61.895 60.000 0.00 0.00 0.00 3.67
87 88 1.271840 ATATGGGTCGGCAGGTGTGT 61.272 55.000 0.00 0.00 0.00 3.72
88 89 0.532862 GATATGGGTCGGCAGGTGTG 60.533 60.000 0.00 0.00 0.00 3.82
89 90 1.830145 GATATGGGTCGGCAGGTGT 59.170 57.895 0.00 0.00 0.00 4.16
90 91 1.300931 CGATATGGGTCGGCAGGTG 60.301 63.158 0.00 0.00 37.94 4.00
91 92 1.046472 TTCGATATGGGTCGGCAGGT 61.046 55.000 0.00 0.00 41.74 4.00
92 93 0.105964 TTTCGATATGGGTCGGCAGG 59.894 55.000 0.00 0.00 41.74 4.85
93 94 1.867233 CTTTTCGATATGGGTCGGCAG 59.133 52.381 0.00 0.00 41.74 4.85
94 95 1.948104 CTTTTCGATATGGGTCGGCA 58.052 50.000 0.00 0.00 41.74 5.69
95 96 0.586802 GCTTTTCGATATGGGTCGGC 59.413 55.000 0.00 0.00 41.74 5.54
96 97 0.859232 CGCTTTTCGATATGGGTCGG 59.141 55.000 0.00 0.00 41.74 4.79
97 98 0.859232 CCGCTTTTCGATATGGGTCG 59.141 55.000 0.00 0.00 41.67 4.79
98 99 1.865340 GTCCGCTTTTCGATATGGGTC 59.135 52.381 0.00 0.00 41.67 4.46
99 100 1.805120 CGTCCGCTTTTCGATATGGGT 60.805 52.381 0.00 0.00 41.67 4.51
100 101 0.859232 CGTCCGCTTTTCGATATGGG 59.141 55.000 0.00 0.00 41.67 4.00
101 102 0.232303 GCGTCCGCTTTTCGATATGG 59.768 55.000 4.10 0.00 41.67 2.74
102 103 0.111704 CGCGTCCGCTTTTCGATATG 60.112 55.000 10.21 0.00 41.67 1.78
103 104 0.526954 ACGCGTCCGCTTTTCGATAT 60.527 50.000 5.58 0.00 41.67 1.63
104 105 0.098552 TACGCGTCCGCTTTTCGATA 59.901 50.000 18.63 0.00 41.67 2.92
105 106 1.153978 TACGCGTCCGCTTTTCGAT 60.154 52.632 18.63 0.00 41.67 3.59
106 107 2.082366 GTACGCGTCCGCTTTTCGA 61.082 57.895 18.63 0.00 41.67 3.71
107 108 2.389143 GTACGCGTCCGCTTTTCG 59.611 61.111 18.63 0.00 39.32 3.46
108 109 2.389143 CGTACGCGTCCGCTTTTC 59.611 61.111 18.63 0.00 39.32 2.29
118 119 2.572647 GTCAGACGGACGTACGCG 60.573 66.667 22.56 14.40 44.93 6.01
130 131 0.249573 GTTCGTTTGGGTCGGTCAGA 60.250 55.000 0.00 0.00 0.00 3.27
131 132 1.554042 CGTTCGTTTGGGTCGGTCAG 61.554 60.000 0.00 0.00 0.00 3.51
132 133 1.592131 CGTTCGTTTGGGTCGGTCA 60.592 57.895 0.00 0.00 0.00 4.02
133 134 0.875474 TTCGTTCGTTTGGGTCGGTC 60.875 55.000 0.00 0.00 0.00 4.79
134 135 0.461693 TTTCGTTCGTTTGGGTCGGT 60.462 50.000 0.00 0.00 0.00 4.69
135 136 0.656785 TTTTCGTTCGTTTGGGTCGG 59.343 50.000 0.00 0.00 0.00 4.79
136 137 2.103388 GTTTTTCGTTCGTTTGGGTCG 58.897 47.619 0.00 0.00 0.00 4.79
137 138 3.103007 CTGTTTTTCGTTCGTTTGGGTC 58.897 45.455 0.00 0.00 0.00 4.46
138 139 2.748532 TCTGTTTTTCGTTCGTTTGGGT 59.251 40.909 0.00 0.00 0.00 4.51
139 140 3.408288 TCTGTTTTTCGTTCGTTTGGG 57.592 42.857 0.00 0.00 0.00 4.12
140 141 6.689669 ACTTTATCTGTTTTTCGTTCGTTTGG 59.310 34.615 0.00 0.00 0.00 3.28
141 142 7.535408 CACTTTATCTGTTTTTCGTTCGTTTG 58.465 34.615 0.00 0.00 0.00 2.93
142 143 6.195798 GCACTTTATCTGTTTTTCGTTCGTTT 59.804 34.615 0.00 0.00 0.00 3.60
143 144 5.679792 GCACTTTATCTGTTTTTCGTTCGTT 59.320 36.000 0.00 0.00 0.00 3.85
144 145 5.202640 GCACTTTATCTGTTTTTCGTTCGT 58.797 37.500 0.00 0.00 0.00 3.85
145 146 4.314708 CGCACTTTATCTGTTTTTCGTTCG 59.685 41.667 0.00 0.00 0.00 3.95
146 147 4.086664 GCGCACTTTATCTGTTTTTCGTTC 59.913 41.667 0.30 0.00 0.00 3.95
147 148 3.972502 GCGCACTTTATCTGTTTTTCGTT 59.027 39.130 0.30 0.00 0.00 3.85
148 149 3.551551 GCGCACTTTATCTGTTTTTCGT 58.448 40.909 0.30 0.00 0.00 3.85
149 150 2.583801 CGCGCACTTTATCTGTTTTTCG 59.416 45.455 8.75 0.00 0.00 3.46
150 151 3.551551 ACGCGCACTTTATCTGTTTTTC 58.448 40.909 5.73 0.00 0.00 2.29
151 152 3.551551 GACGCGCACTTTATCTGTTTTT 58.448 40.909 5.73 0.00 0.00 1.94
152 153 2.095919 GGACGCGCACTTTATCTGTTTT 60.096 45.455 5.73 0.00 0.00 2.43
153 154 1.463444 GGACGCGCACTTTATCTGTTT 59.537 47.619 5.73 0.00 0.00 2.83
154 155 1.076332 GGACGCGCACTTTATCTGTT 58.924 50.000 5.73 0.00 0.00 3.16
155 156 1.076533 CGGACGCGCACTTTATCTGT 61.077 55.000 5.73 0.00 0.00 3.41
156 157 1.076533 ACGGACGCGCACTTTATCTG 61.077 55.000 5.73 1.29 0.00 2.90
157 158 0.389426 AACGGACGCGCACTTTATCT 60.389 50.000 5.73 0.00 0.00 1.98
158 159 0.441145 AAACGGACGCGCACTTTATC 59.559 50.000 5.73 0.00 0.00 1.75
159 160 0.165079 CAAACGGACGCGCACTTTAT 59.835 50.000 5.73 0.00 0.00 1.40
160 161 0.875040 TCAAACGGACGCGCACTTTA 60.875 50.000 5.73 0.00 0.00 1.85
161 162 2.174969 TCAAACGGACGCGCACTTT 61.175 52.632 5.73 0.00 0.00 2.66
162 163 2.586635 TCAAACGGACGCGCACTT 60.587 55.556 5.73 0.00 0.00 3.16
163 164 3.335534 GTCAAACGGACGCGCACT 61.336 61.111 5.73 0.00 36.65 4.40
173 174 1.083657 CAACACGCCGAGTCAAACG 60.084 57.895 0.00 0.00 0.00 3.60
174 175 1.155424 TCCAACACGCCGAGTCAAAC 61.155 55.000 0.00 0.00 0.00 2.93
175 176 0.878523 CTCCAACACGCCGAGTCAAA 60.879 55.000 0.00 0.00 0.00 2.69
176 177 1.300620 CTCCAACACGCCGAGTCAA 60.301 57.895 0.00 0.00 0.00 3.18
177 178 2.023414 AACTCCAACACGCCGAGTCA 62.023 55.000 0.00 0.00 35.84 3.41
178 179 0.878961 AAACTCCAACACGCCGAGTC 60.879 55.000 0.00 0.00 35.84 3.36
179 180 0.878961 GAAACTCCAACACGCCGAGT 60.879 55.000 0.00 0.00 38.50 4.18
180 181 0.600255 AGAAACTCCAACACGCCGAG 60.600 55.000 0.00 0.00 0.00 4.63
181 182 0.599204 GAGAAACTCCAACACGCCGA 60.599 55.000 0.00 0.00 0.00 5.54
182 183 0.600255 AGAGAAACTCCAACACGCCG 60.600 55.000 0.00 0.00 0.00 6.46
183 184 1.149148 GAGAGAAACTCCAACACGCC 58.851 55.000 0.00 0.00 39.53 5.68
192 193 4.277174 TGATGCGAGATAGGAGAGAAACTC 59.723 45.833 0.00 0.00 44.24 3.01
193 194 4.211125 TGATGCGAGATAGGAGAGAAACT 58.789 43.478 0.00 0.00 0.00 2.66
194 195 4.576216 TGATGCGAGATAGGAGAGAAAC 57.424 45.455 0.00 0.00 0.00 2.78
195 196 4.829492 TGATGATGCGAGATAGGAGAGAAA 59.171 41.667 0.00 0.00 0.00 2.52
196 197 4.401925 TGATGATGCGAGATAGGAGAGAA 58.598 43.478 0.00 0.00 0.00 2.87
197 198 4.026356 TGATGATGCGAGATAGGAGAGA 57.974 45.455 0.00 0.00 0.00 3.10
198 199 4.641541 AGATGATGATGCGAGATAGGAGAG 59.358 45.833 0.00 0.00 0.00 3.20
199 200 4.598022 AGATGATGATGCGAGATAGGAGA 58.402 43.478 0.00 0.00 0.00 3.71
200 201 4.987408 AGATGATGATGCGAGATAGGAG 57.013 45.455 0.00 0.00 0.00 3.69
201 202 4.642437 GGTAGATGATGATGCGAGATAGGA 59.358 45.833 0.00 0.00 0.00 2.94
202 203 4.644234 AGGTAGATGATGATGCGAGATAGG 59.356 45.833 0.00 0.00 0.00 2.57
203 204 5.833406 AGGTAGATGATGATGCGAGATAG 57.167 43.478 0.00 0.00 0.00 2.08
204 205 7.112779 TCTAAGGTAGATGATGATGCGAGATA 58.887 38.462 0.00 0.00 0.00 1.98
205 206 5.948758 TCTAAGGTAGATGATGATGCGAGAT 59.051 40.000 0.00 0.00 0.00 2.75
206 207 5.316987 TCTAAGGTAGATGATGATGCGAGA 58.683 41.667 0.00 0.00 0.00 4.04
207 208 5.635417 TCTAAGGTAGATGATGATGCGAG 57.365 43.478 0.00 0.00 0.00 5.03
208 209 5.279006 GGTTCTAAGGTAGATGATGATGCGA 60.279 44.000 0.00 0.00 34.22 5.10
209 210 4.926238 GGTTCTAAGGTAGATGATGATGCG 59.074 45.833 0.00 0.00 34.22 4.73
210 211 5.012561 AGGGTTCTAAGGTAGATGATGATGC 59.987 44.000 0.00 0.00 34.22 3.91
211 212 6.678568 AGGGTTCTAAGGTAGATGATGATG 57.321 41.667 0.00 0.00 34.22 3.07
212 213 6.439058 GCTAGGGTTCTAAGGTAGATGATGAT 59.561 42.308 0.00 0.00 34.22 2.45
213 214 5.775701 GCTAGGGTTCTAAGGTAGATGATGA 59.224 44.000 0.00 0.00 34.22 2.92
214 215 5.777732 AGCTAGGGTTCTAAGGTAGATGATG 59.222 44.000 0.00 0.00 34.22 3.07
215 216 5.971493 AGCTAGGGTTCTAAGGTAGATGAT 58.029 41.667 0.00 0.00 34.22 2.45
216 217 5.405063 AGCTAGGGTTCTAAGGTAGATGA 57.595 43.478 0.00 0.00 34.22 2.92
217 218 5.184287 GCTAGCTAGGGTTCTAAGGTAGATG 59.816 48.000 22.10 0.00 34.22 2.90
218 219 5.075344 AGCTAGCTAGGGTTCTAAGGTAGAT 59.925 44.000 17.69 2.91 34.22 1.98
219 220 4.416179 AGCTAGCTAGGGTTCTAAGGTAGA 59.584 45.833 17.69 0.00 32.67 2.59
220 221 4.732065 AGCTAGCTAGGGTTCTAAGGTAG 58.268 47.826 17.69 0.00 33.28 3.18
221 222 4.810584 AGCTAGCTAGGGTTCTAAGGTA 57.189 45.455 17.69 0.00 0.00 3.08
222 223 3.691698 AGCTAGCTAGGGTTCTAAGGT 57.308 47.619 17.69 0.00 0.00 3.50
223 224 3.322541 GGAAGCTAGCTAGGGTTCTAAGG 59.677 52.174 19.70 0.00 39.97 2.69
224 225 3.961408 TGGAAGCTAGCTAGGGTTCTAAG 59.039 47.826 19.70 0.00 39.97 2.18
225 226 3.705072 GTGGAAGCTAGCTAGGGTTCTAA 59.295 47.826 19.70 12.44 39.97 2.10
226 227 3.297736 GTGGAAGCTAGCTAGGGTTCTA 58.702 50.000 19.70 16.77 39.97 2.10
227 228 2.112190 GTGGAAGCTAGCTAGGGTTCT 58.888 52.381 19.70 7.78 39.97 3.01
228 229 1.831736 TGTGGAAGCTAGCTAGGGTTC 59.168 52.381 19.70 20.05 39.54 3.62
229 230 1.952621 TGTGGAAGCTAGCTAGGGTT 58.047 50.000 19.70 13.80 0.00 4.11
230 231 1.555533 GTTGTGGAAGCTAGCTAGGGT 59.444 52.381 19.70 0.95 0.00 4.34
231 232 1.834263 AGTTGTGGAAGCTAGCTAGGG 59.166 52.381 19.70 0.00 0.00 3.53
232 233 2.497675 TGAGTTGTGGAAGCTAGCTAGG 59.502 50.000 19.70 4.48 0.00 3.02
233 234 3.876274 TGAGTTGTGGAAGCTAGCTAG 57.124 47.619 19.70 16.84 0.00 3.42
234 235 4.617253 TTTGAGTTGTGGAAGCTAGCTA 57.383 40.909 19.70 0.00 0.00 3.32
235 236 3.492102 TTTGAGTTGTGGAAGCTAGCT 57.508 42.857 12.68 12.68 0.00 3.32
236 237 4.670221 CGAATTTGAGTTGTGGAAGCTAGC 60.670 45.833 6.62 6.62 0.00 3.42
237 238 4.142816 CCGAATTTGAGTTGTGGAAGCTAG 60.143 45.833 0.00 0.00 0.00 3.42
238 239 3.751175 CCGAATTTGAGTTGTGGAAGCTA 59.249 43.478 0.00 0.00 0.00 3.32
239 240 2.554032 CCGAATTTGAGTTGTGGAAGCT 59.446 45.455 0.00 0.00 0.00 3.74
240 241 2.552315 TCCGAATTTGAGTTGTGGAAGC 59.448 45.455 0.00 0.00 0.00 3.86
241 242 3.365364 GCTCCGAATTTGAGTTGTGGAAG 60.365 47.826 0.00 0.00 32.31 3.46
242 243 2.552315 GCTCCGAATTTGAGTTGTGGAA 59.448 45.455 0.00 0.00 32.31 3.53
243 244 2.151202 GCTCCGAATTTGAGTTGTGGA 58.849 47.619 0.00 0.00 32.31 4.02
244 245 1.135972 CGCTCCGAATTTGAGTTGTGG 60.136 52.381 0.00 0.00 32.31 4.17
245 246 1.798223 TCGCTCCGAATTTGAGTTGTG 59.202 47.619 0.00 0.00 31.06 3.33
246 247 2.069273 CTCGCTCCGAATTTGAGTTGT 58.931 47.619 0.00 0.00 34.74 3.32
247 248 1.201965 GCTCGCTCCGAATTTGAGTTG 60.202 52.381 0.00 0.00 34.74 3.16
248 249 1.079503 GCTCGCTCCGAATTTGAGTT 58.920 50.000 0.00 0.00 34.74 3.01
249 250 0.037326 TGCTCGCTCCGAATTTGAGT 60.037 50.000 0.00 0.00 34.74 3.41
250 251 1.260033 GATGCTCGCTCCGAATTTGAG 59.740 52.381 0.00 0.00 34.74 3.02
251 252 1.290203 GATGCTCGCTCCGAATTTGA 58.710 50.000 0.00 0.00 34.74 2.69
252 253 0.305922 GGATGCTCGCTCCGAATTTG 59.694 55.000 0.00 0.00 34.74 2.32
253 254 0.107703 TGGATGCTCGCTCCGAATTT 60.108 50.000 0.00 0.00 34.74 1.82
254 255 0.811616 GTGGATGCTCGCTCCGAATT 60.812 55.000 0.00 0.00 34.74 2.17
255 256 1.227380 GTGGATGCTCGCTCCGAAT 60.227 57.895 0.00 0.00 34.74 3.34
256 257 2.184322 GTGGATGCTCGCTCCGAA 59.816 61.111 0.00 0.00 34.74 4.30
257 258 3.838271 GGTGGATGCTCGCTCCGA 61.838 66.667 0.00 0.00 35.41 4.55
258 259 2.016393 TAAGGTGGATGCTCGCTCCG 62.016 60.000 0.00 0.00 35.41 4.63
259 260 0.530870 GTAAGGTGGATGCTCGCTCC 60.531 60.000 0.00 0.00 0.00 4.70
260 261 0.175760 TGTAAGGTGGATGCTCGCTC 59.824 55.000 0.00 0.00 0.00 5.03
261 262 0.613260 TTGTAAGGTGGATGCTCGCT 59.387 50.000 0.00 0.00 0.00 4.93
262 263 1.331756 CATTGTAAGGTGGATGCTCGC 59.668 52.381 0.00 0.00 0.00 5.03
263 264 1.942657 CCATTGTAAGGTGGATGCTCG 59.057 52.381 0.00 0.00 37.72 5.03
264 265 3.281727 TCCATTGTAAGGTGGATGCTC 57.718 47.619 0.00 0.00 39.51 4.26
265 266 3.010584 AGTTCCATTGTAAGGTGGATGCT 59.989 43.478 0.00 0.00 43.61 3.79
266 267 3.129287 CAGTTCCATTGTAAGGTGGATGC 59.871 47.826 0.00 0.00 43.61 3.91
267 268 4.335416 ACAGTTCCATTGTAAGGTGGATG 58.665 43.478 0.00 0.00 43.61 3.51
268 269 4.657814 ACAGTTCCATTGTAAGGTGGAT 57.342 40.909 0.00 0.00 43.61 3.41
269 270 4.141367 TGAACAGTTCCATTGTAAGGTGGA 60.141 41.667 10.93 0.00 42.55 4.02
270 271 4.141287 TGAACAGTTCCATTGTAAGGTGG 58.859 43.478 10.93 0.00 36.82 4.61
271 272 5.473162 TCATGAACAGTTCCATTGTAAGGTG 59.527 40.000 10.93 0.00 0.00 4.00
272 273 5.630121 TCATGAACAGTTCCATTGTAAGGT 58.370 37.500 10.93 0.00 0.00 3.50
273 274 5.124457 CCTCATGAACAGTTCCATTGTAAGG 59.876 44.000 10.93 6.21 0.00 2.69
274 275 5.707298 ACCTCATGAACAGTTCCATTGTAAG 59.293 40.000 10.93 1.61 0.00 2.34
275 276 5.630121 ACCTCATGAACAGTTCCATTGTAA 58.370 37.500 10.93 0.00 0.00 2.41
276 277 5.241403 ACCTCATGAACAGTTCCATTGTA 57.759 39.130 10.93 0.00 0.00 2.41
277 278 4.104383 ACCTCATGAACAGTTCCATTGT 57.896 40.909 10.93 0.00 0.00 2.71
278 279 5.248640 AGTACCTCATGAACAGTTCCATTG 58.751 41.667 10.93 6.29 0.00 2.82
279 280 5.505181 AGTACCTCATGAACAGTTCCATT 57.495 39.130 10.93 0.00 0.00 3.16
280 281 5.505181 AAGTACCTCATGAACAGTTCCAT 57.495 39.130 10.93 2.08 0.00 3.41
281 282 4.974645 AAGTACCTCATGAACAGTTCCA 57.025 40.909 10.93 0.00 0.00 3.53
282 283 5.763204 TCAAAAGTACCTCATGAACAGTTCC 59.237 40.000 10.93 0.00 0.00 3.62
283 284 6.861065 TCAAAAGTACCTCATGAACAGTTC 57.139 37.500 6.32 6.32 0.00 3.01
284 285 6.147821 CGATCAAAAGTACCTCATGAACAGTT 59.852 38.462 0.00 0.00 0.00 3.16
285 286 5.639506 CGATCAAAAGTACCTCATGAACAGT 59.360 40.000 0.00 0.00 0.00 3.55
286 287 5.869344 TCGATCAAAAGTACCTCATGAACAG 59.131 40.000 0.00 0.00 0.00 3.16
297 298 9.798885 GATATGCTTACAATCGATCAAAAGTAC 57.201 33.333 0.00 0.00 0.00 2.73
299 300 8.437360 TGATATGCTTACAATCGATCAAAAGT 57.563 30.769 0.00 0.00 0.00 2.66
306 307 7.820872 TCACATCATGATATGCTTACAATCGAT 59.179 33.333 9.19 0.00 29.99 3.59
331 332 2.474410 ACGAGGGAGGTTTGTTGATC 57.526 50.000 0.00 0.00 0.00 2.92
337 338 3.534721 GGAGAACGAGGGAGGTTTG 57.465 57.895 0.00 0.00 0.00 2.93
377 378 9.347240 CCAGTTGATCTCAAGTTTATCCATTAT 57.653 33.333 0.00 0.00 37.41 1.28
378 379 8.328758 ACCAGTTGATCTCAAGTTTATCCATTA 58.671 33.333 0.00 0.00 37.41 1.90
380 381 6.725364 ACCAGTTGATCTCAAGTTTATCCAT 58.275 36.000 0.00 0.00 37.41 3.41
401 402 1.149987 GCCGATTTGACGTGTAACCA 58.850 50.000 0.00 0.00 0.00 3.67
408 409 3.502211 AGATTTTTCAGCCGATTTGACGT 59.498 39.130 0.00 0.00 0.00 4.34
432 433 2.091098 TAGGCCCGCCACTCTAAATA 57.909 50.000 8.74 0.00 38.92 1.40
512 519 6.875195 GCCAATGGTTATATGGAAAATGATGG 59.125 38.462 0.00 0.00 36.27 3.51
546 553 6.234177 ACATGAGAAGTACTGAAAAAGGGAG 58.766 40.000 0.00 0.00 0.00 4.30
568 575 9.622004 CTCTTCTTCTGAATAAAACGTACTACA 57.378 33.333 0.00 0.00 0.00 2.74
689 1469 3.820467 TCTTCACCGCACATTCAGAATTT 59.180 39.130 0.00 0.00 0.00 1.82
733 1718 2.393271 CTGAGGAAGACGCAGGAATT 57.607 50.000 0.00 0.00 42.51 2.17
742 1727 1.066502 GGAGCCTTGACTGAGGAAGAC 60.067 57.143 0.00 0.00 39.25 3.01
746 1731 0.411452 AGAGGAGCCTTGACTGAGGA 59.589 55.000 0.00 0.00 39.25 3.71
766 1751 4.764679 TGTTAACTGACATCACATTGGC 57.235 40.909 7.22 0.00 0.00 4.52
770 1755 6.017934 GTGTGACTTGTTAACTGACATCACAT 60.018 38.462 22.44 0.00 44.61 3.21
772 1757 5.523916 AGTGTGACTTGTTAACTGACATCAC 59.476 40.000 7.22 12.79 38.82 3.06
775 1760 5.670485 TCAGTGTGACTTGTTAACTGACAT 58.330 37.500 7.22 0.00 41.63 3.06
795 1780 4.743057 TGTCAGTTCATATCCCTGTCAG 57.257 45.455 0.00 0.00 0.00 3.51
992 1979 1.691434 GATGGGATGAGGTGGAGAGAC 59.309 57.143 0.00 0.00 0.00 3.36
1023 2010 2.666508 GTGTTGTGTGGATGTACTAGCG 59.333 50.000 0.00 0.00 0.00 4.26
1024 2011 3.000727 GGTGTTGTGTGGATGTACTAGC 58.999 50.000 0.00 0.00 0.00 3.42
1025 2012 3.994392 GTGGTGTTGTGTGGATGTACTAG 59.006 47.826 0.00 0.00 0.00 2.57
1027 2014 2.438021 AGTGGTGTTGTGTGGATGTACT 59.562 45.455 0.00 0.00 0.00 2.73
1028 2015 2.806244 GAGTGGTGTTGTGTGGATGTAC 59.194 50.000 0.00 0.00 0.00 2.90
1029 2016 2.547007 CGAGTGGTGTTGTGTGGATGTA 60.547 50.000 0.00 0.00 0.00 2.29
1030 2017 1.810031 CGAGTGGTGTTGTGTGGATGT 60.810 52.381 0.00 0.00 0.00 3.06
1031 2018 0.867746 CGAGTGGTGTTGTGTGGATG 59.132 55.000 0.00 0.00 0.00 3.51
1033 2020 0.104120 CTCGAGTGGTGTTGTGTGGA 59.896 55.000 3.62 0.00 0.00 4.02
1034 2021 0.179084 ACTCGAGTGGTGTTGTGTGG 60.179 55.000 19.30 0.00 0.00 4.17
1039 2031 2.509052 TTCAGACTCGAGTGGTGTTG 57.491 50.000 25.58 12.72 0.00 3.33
1040 2032 2.431057 AGTTTCAGACTCGAGTGGTGTT 59.569 45.455 25.58 0.00 31.20 3.32
1075 2067 0.601576 CGGAACAACCATGGTGACGA 60.602 55.000 20.60 0.00 38.90 4.20
1205 2205 1.293498 GCGGTCAAGAAGCTCCAGA 59.707 57.895 0.00 0.00 0.00 3.86
1343 2343 1.595993 CCCAGTCCATGTCGTCGACT 61.596 60.000 24.75 8.95 37.34 4.18
1346 2346 1.139734 CTCCCAGTCCATGTCGTCG 59.860 63.158 0.00 0.00 0.00 5.12
1838 2838 1.153628 CGCCGGGTTGTAGAAGGAG 60.154 63.158 2.18 0.00 0.00 3.69
1898 2898 2.361483 TAGTCTGGGTACGCGGCA 60.361 61.111 12.47 0.00 0.00 5.69
1910 2910 3.579586 TGTAATCCCCAAACACGTAGTCT 59.420 43.478 0.00 0.00 41.61 3.24
2030 3037 7.169308 CCAGCTAATAGGTAAATAGTTGTCGTG 59.831 40.741 0.00 0.00 0.00 4.35
2035 3043 8.451908 AAAGCCAGCTAATAGGTAAATAGTTG 57.548 34.615 0.00 0.00 0.00 3.16
2038 3046 8.451908 ACAAAAGCCAGCTAATAGGTAAATAG 57.548 34.615 0.00 0.00 0.00 1.73
2087 3100 0.392461 TAGCACCATCGCCCAGAAAC 60.392 55.000 0.00 0.00 0.00 2.78
2357 3372 5.104109 TGACCGAGGGGATTGAATAGAAAAT 60.104 40.000 0.00 0.00 36.97 1.82
2706 3725 4.041567 TCCATGACATCGCCCAGTAATATT 59.958 41.667 0.00 0.00 0.00 1.28
2895 3914 1.881973 GCACGCACATATCCAATCCAT 59.118 47.619 0.00 0.00 0.00 3.41
2939 3958 5.730550 ACTCCATGAACAAAGCGATAACTA 58.269 37.500 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.