Multiple sequence alignment - TraesCS1B01G117300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G117300 | chr1B | 100.000 | 3020 | 0 | 0 | 1 | 3020 | 137451610 | 137448591 | 0.000000e+00 | 5578.0 |
1 | TraesCS1B01G117300 | chr1B | 96.229 | 1379 | 34 | 11 | 731 | 2092 | 137613308 | 137614685 | 0.000000e+00 | 2242.0 |
2 | TraesCS1B01G117300 | chr1B | 95.882 | 1287 | 36 | 10 | 810 | 2092 | 137182302 | 137181029 | 0.000000e+00 | 2067.0 |
3 | TraesCS1B01G117300 | chr1B | 91.892 | 740 | 45 | 13 | 1 | 731 | 137176796 | 137176063 | 0.000000e+00 | 1020.0 |
4 | TraesCS1B01G117300 | chr1B | 85.061 | 328 | 27 | 8 | 2678 | 3003 | 137155185 | 137154878 | 6.280000e-82 | 315.0 |
5 | TraesCS1B01G117300 | chr1B | 93.296 | 179 | 9 | 3 | 2466 | 2643 | 242176019 | 242176195 | 8.300000e-66 | 261.0 |
6 | TraesCS1B01G117300 | chr1B | 92.073 | 164 | 11 | 2 | 2628 | 2790 | 137180598 | 137180436 | 2.340000e-56 | 230.0 |
7 | TraesCS1B01G117300 | chr1B | 88.021 | 192 | 23 | 0 | 2193 | 2384 | 137180788 | 137180597 | 8.420000e-56 | 228.0 |
8 | TraesCS1B01G117300 | chr1B | 87.619 | 105 | 13 | 0 | 2279 | 2383 | 137162422 | 137162318 | 4.090000e-24 | 122.0 |
9 | TraesCS1B01G117300 | chr1B | 94.340 | 53 | 3 | 0 | 2635 | 2687 | 137162314 | 137162262 | 6.940000e-12 | 82.4 |
10 | TraesCS1B01G117300 | chr1D | 92.313 | 1379 | 74 | 13 | 731 | 2092 | 84615757 | 84614394 | 0.000000e+00 | 1930.0 |
11 | TraesCS1B01G117300 | chr1D | 93.224 | 1284 | 66 | 5 | 731 | 2014 | 84891509 | 84892771 | 0.000000e+00 | 1869.0 |
12 | TraesCS1B01G117300 | chr1D | 91.132 | 1387 | 82 | 23 | 731 | 2092 | 84728726 | 84727356 | 0.000000e+00 | 1842.0 |
13 | TraesCS1B01G117300 | chr1D | 89.947 | 378 | 30 | 7 | 2628 | 3003 | 84614023 | 84613652 | 5.860000e-132 | 481.0 |
14 | TraesCS1B01G117300 | chr1D | 86.788 | 386 | 32 | 12 | 2628 | 3010 | 84726573 | 84726204 | 2.170000e-111 | 412.0 |
15 | TraesCS1B01G117300 | chr1D | 86.528 | 386 | 31 | 9 | 2628 | 3011 | 84571526 | 84571160 | 3.630000e-109 | 405.0 |
16 | TraesCS1B01G117300 | chr1D | 93.229 | 192 | 12 | 1 | 2193 | 2384 | 84726762 | 84726572 | 6.370000e-72 | 281.0 |
17 | TraesCS1B01G117300 | chr1D | 94.706 | 170 | 8 | 1 | 2462 | 2630 | 331539433 | 331539264 | 2.310000e-66 | 263.0 |
18 | TraesCS1B01G117300 | chr1D | 86.979 | 192 | 14 | 6 | 2193 | 2384 | 84614202 | 84614022 | 3.950000e-49 | 206.0 |
19 | TraesCS1B01G117300 | chr1D | 89.032 | 155 | 17 | 0 | 2036 | 2190 | 84614388 | 84614234 | 3.070000e-45 | 193.0 |
20 | TraesCS1B01G117300 | chr1D | 85.714 | 168 | 24 | 0 | 1858 | 2025 | 84573501 | 84573334 | 8.600000e-41 | 178.0 |
21 | TraesCS1B01G117300 | chr1D | 81.513 | 238 | 22 | 14 | 368 | 602 | 438359810 | 438359592 | 3.090000e-40 | 176.0 |
22 | TraesCS1B01G117300 | chr1D | 89.623 | 106 | 11 | 0 | 2279 | 2384 | 84571630 | 84571525 | 5.250000e-28 | 135.0 |
23 | TraesCS1B01G117300 | chr1A | 92.881 | 1208 | 75 | 4 | 818 | 2025 | 78551253 | 78550057 | 0.000000e+00 | 1744.0 |
24 | TraesCS1B01G117300 | chr1A | 92.617 | 1070 | 59 | 8 | 795 | 1863 | 79110399 | 79111449 | 0.000000e+00 | 1520.0 |
25 | TraesCS1B01G117300 | chr1A | 91.403 | 663 | 46 | 6 | 1433 | 2092 | 78958402 | 78957748 | 0.000000e+00 | 898.0 |
26 | TraesCS1B01G117300 | chr1A | 88.493 | 730 | 57 | 14 | 1 | 726 | 78960509 | 78959803 | 0.000000e+00 | 857.0 |
27 | TraesCS1B01G117300 | chr1A | 86.772 | 378 | 34 | 10 | 2628 | 3003 | 78956963 | 78956600 | 1.010000e-109 | 407.0 |
28 | TraesCS1B01G117300 | chr1A | 85.488 | 379 | 32 | 9 | 2635 | 3011 | 78339933 | 78339576 | 1.020000e-99 | 374.0 |
29 | TraesCS1B01G117300 | chr1A | 89.931 | 288 | 24 | 5 | 2628 | 2913 | 78549220 | 78548936 | 1.710000e-97 | 366.0 |
30 | TraesCS1B01G117300 | chr1A | 91.667 | 192 | 16 | 0 | 2193 | 2384 | 78957153 | 78956962 | 1.780000e-67 | 267.0 |
31 | TraesCS1B01G117300 | chr1A | 90.155 | 193 | 17 | 2 | 2193 | 2384 | 78549410 | 78549219 | 1.800000e-62 | 250.0 |
32 | TraesCS1B01G117300 | chr1A | 89.506 | 162 | 13 | 2 | 2032 | 2190 | 78550002 | 78549842 | 5.110000e-48 | 202.0 |
33 | TraesCS1B01G117300 | chr1A | 91.156 | 147 | 13 | 0 | 1868 | 2014 | 79116295 | 79116441 | 1.840000e-47 | 200.0 |
34 | TraesCS1B01G117300 | chr1A | 97.826 | 46 | 1 | 0 | 731 | 776 | 78551365 | 78551320 | 2.500000e-11 | 80.5 |
35 | TraesCS1B01G117300 | chr1A | 79.832 | 119 | 9 | 7 | 1981 | 2092 | 78549838 | 78549728 | 4.180000e-09 | 73.1 |
36 | TraesCS1B01G117300 | chr1A | 100.000 | 28 | 0 | 0 | 2034 | 2061 | 78549967 | 78549940 | 5.000000e-03 | 52.8 |
37 | TraesCS1B01G117300 | chr2A | 84.918 | 789 | 91 | 17 | 839 | 1626 | 611763820 | 611764581 | 0.000000e+00 | 773.0 |
38 | TraesCS1B01G117300 | chr2A | 92.090 | 177 | 10 | 4 | 2466 | 2641 | 709834359 | 709834532 | 2.330000e-61 | 246.0 |
39 | TraesCS1B01G117300 | chr2A | 76.574 | 397 | 70 | 18 | 213 | 602 | 645819435 | 645819055 | 2.380000e-46 | 196.0 |
40 | TraesCS1B01G117300 | chr2A | 80.488 | 205 | 33 | 6 | 408 | 610 | 717414063 | 717413864 | 1.880000e-32 | 150.0 |
41 | TraesCS1B01G117300 | chr2A | 86.301 | 73 | 6 | 2 | 2389 | 2457 | 658150143 | 658150071 | 3.230000e-10 | 76.8 |
42 | TraesCS1B01G117300 | chr2D | 87.297 | 677 | 79 | 6 | 1340 | 2014 | 470200971 | 470201642 | 0.000000e+00 | 767.0 |
43 | TraesCS1B01G117300 | chr2D | 84.477 | 554 | 63 | 13 | 839 | 1392 | 470200444 | 470200974 | 2.670000e-145 | 525.0 |
44 | TraesCS1B01G117300 | chr2D | 80.928 | 388 | 59 | 12 | 221 | 605 | 33583468 | 33583093 | 2.940000e-75 | 292.0 |
45 | TraesCS1B01G117300 | chr2D | 91.623 | 191 | 11 | 5 | 2459 | 2647 | 509744298 | 509744485 | 2.990000e-65 | 259.0 |
46 | TraesCS1B01G117300 | chr2D | 92.697 | 178 | 10 | 2 | 2466 | 2642 | 475088502 | 475088327 | 1.390000e-63 | 254.0 |
47 | TraesCS1B01G117300 | chr2D | 92.135 | 178 | 11 | 3 | 2466 | 2642 | 416758783 | 416758608 | 6.470000e-62 | 248.0 |
48 | TraesCS1B01G117300 | chr2D | 88.482 | 191 | 16 | 4 | 9 | 197 | 543288330 | 543288144 | 3.030000e-55 | 226.0 |
49 | TraesCS1B01G117300 | chr2D | 76.687 | 326 | 52 | 18 | 290 | 602 | 501269240 | 501269554 | 3.120000e-35 | 159.0 |
50 | TraesCS1B01G117300 | chr2D | 100.000 | 31 | 0 | 0 | 2385 | 2415 | 490677423 | 490677453 | 1.170000e-04 | 58.4 |
51 | TraesCS1B01G117300 | chr2D | 92.308 | 39 | 1 | 1 | 2377 | 2415 | 631487216 | 631487252 | 2.000000e-03 | 54.7 |
52 | TraesCS1B01G117300 | chrUn | 100.000 | 390 | 0 | 0 | 1528 | 1917 | 480029644 | 480030033 | 0.000000e+00 | 721.0 |
53 | TraesCS1B01G117300 | chr2B | 97.576 | 165 | 4 | 0 | 2466 | 2630 | 548626654 | 548626818 | 1.770000e-72 | 283.0 |
54 | TraesCS1B01G117300 | chr2B | 91.111 | 180 | 13 | 3 | 2466 | 2644 | 447742195 | 447742372 | 1.080000e-59 | 241.0 |
55 | TraesCS1B01G117300 | chr2B | 80.503 | 318 | 46 | 13 | 293 | 605 | 55857208 | 55856902 | 2.340000e-56 | 230.0 |
56 | TraesCS1B01G117300 | chr5B | 95.930 | 172 | 6 | 1 | 2466 | 2637 | 43959396 | 43959226 | 8.250000e-71 | 278.0 |
57 | TraesCS1B01G117300 | chr5B | 95.906 | 171 | 7 | 0 | 2459 | 2629 | 514075614 | 514075784 | 8.250000e-71 | 278.0 |
58 | TraesCS1B01G117300 | chr5B | 96.429 | 168 | 5 | 1 | 2463 | 2629 | 221204145 | 221204312 | 2.970000e-70 | 276.0 |
59 | TraesCS1B01G117300 | chr5B | 89.163 | 203 | 18 | 3 | 2430 | 2629 | 645060969 | 645060768 | 1.800000e-62 | 250.0 |
60 | TraesCS1B01G117300 | chr5B | 91.758 | 182 | 11 | 3 | 2449 | 2629 | 663232343 | 663232165 | 1.800000e-62 | 250.0 |
61 | TraesCS1B01G117300 | chr5B | 90.278 | 72 | 5 | 2 | 2389 | 2458 | 324964729 | 324964800 | 3.210000e-15 | 93.5 |
62 | TraesCS1B01G117300 | chr5B | 100.000 | 31 | 0 | 0 | 2385 | 2415 | 711742606 | 711742636 | 1.170000e-04 | 58.4 |
63 | TraesCS1B01G117300 | chr6B | 96.429 | 168 | 5 | 1 | 2466 | 2633 | 160905141 | 160905307 | 2.970000e-70 | 276.0 |
64 | TraesCS1B01G117300 | chr6B | 90.196 | 204 | 17 | 3 | 2427 | 2629 | 718313636 | 718313837 | 2.310000e-66 | 263.0 |
65 | TraesCS1B01G117300 | chr6B | 89.894 | 188 | 17 | 2 | 2462 | 2649 | 696026036 | 696025851 | 1.080000e-59 | 241.0 |
66 | TraesCS1B01G117300 | chr4A | 96.951 | 164 | 5 | 0 | 2466 | 2629 | 690409093 | 690408930 | 2.970000e-70 | 276.0 |
67 | TraesCS1B01G117300 | chr3B | 96.407 | 167 | 4 | 2 | 2466 | 2631 | 455517920 | 455518085 | 1.070000e-69 | 274.0 |
68 | TraesCS1B01G117300 | chr3B | 90.047 | 211 | 15 | 6 | 2431 | 2639 | 545070633 | 545070427 | 4.960000e-68 | 268.0 |
69 | TraesCS1B01G117300 | chr3B | 92.391 | 184 | 12 | 2 | 2466 | 2647 | 665475961 | 665476144 | 8.300000e-66 | 261.0 |
70 | TraesCS1B01G117300 | chr3B | 87.113 | 194 | 24 | 1 | 5 | 198 | 800217730 | 800217922 | 5.070000e-53 | 219.0 |
71 | TraesCS1B01G117300 | chr3B | 97.297 | 37 | 0 | 1 | 2426 | 2462 | 42122569 | 42122534 | 9.040000e-06 | 62.1 |
72 | TraesCS1B01G117300 | chr3B | 97.222 | 36 | 1 | 0 | 2426 | 2461 | 753744212 | 753744247 | 9.040000e-06 | 62.1 |
73 | TraesCS1B01G117300 | chr7D | 92.857 | 182 | 11 | 2 | 2451 | 2630 | 381797776 | 381797957 | 2.310000e-66 | 263.0 |
74 | TraesCS1B01G117300 | chr4B | 91.444 | 187 | 13 | 2 | 2446 | 2629 | 323794472 | 323794658 | 1.390000e-63 | 254.0 |
75 | TraesCS1B01G117300 | chr4B | 94.872 | 39 | 0 | 2 | 2378 | 2415 | 515146022 | 515145985 | 3.250000e-05 | 60.2 |
76 | TraesCS1B01G117300 | chr4D | 93.529 | 170 | 10 | 1 | 2462 | 2630 | 102042415 | 102042246 | 5.000000e-63 | 252.0 |
77 | TraesCS1B01G117300 | chr4D | 85.646 | 209 | 23 | 7 | 4 | 207 | 12696084 | 12695878 | 2.360000e-51 | 213.0 |
78 | TraesCS1B01G117300 | chr4D | 87.273 | 55 | 5 | 2 | 2417 | 2471 | 371792579 | 371792631 | 9.040000e-06 | 62.1 |
79 | TraesCS1B01G117300 | chr3D | 91.160 | 181 | 13 | 3 | 2463 | 2642 | 458565464 | 458565642 | 3.010000e-60 | 243.0 |
80 | TraesCS1B01G117300 | chr3D | 85.644 | 202 | 25 | 4 | 4 | 203 | 556023978 | 556024177 | 3.050000e-50 | 209.0 |
81 | TraesCS1B01G117300 | chr3D | 100.000 | 33 | 0 | 0 | 2383 | 2415 | 91370119 | 91370151 | 9.040000e-06 | 62.1 |
82 | TraesCS1B01G117300 | chr7A | 87.629 | 194 | 23 | 1 | 4 | 197 | 732002157 | 732002349 | 1.090000e-54 | 224.0 |
83 | TraesCS1B01G117300 | chr7A | 94.444 | 36 | 2 | 0 | 2383 | 2418 | 44884944 | 44884979 | 4.210000e-04 | 56.5 |
84 | TraesCS1B01G117300 | chr6A | 87.179 | 195 | 24 | 1 | 4 | 198 | 608656186 | 608655993 | 1.410000e-53 | 220.0 |
85 | TraesCS1B01G117300 | chr6D | 86.869 | 198 | 23 | 3 | 4 | 199 | 266670318 | 266670122 | 5.070000e-53 | 219.0 |
86 | TraesCS1B01G117300 | chr6D | 87.324 | 71 | 5 | 4 | 2391 | 2457 | 371666863 | 371666933 | 8.980000e-11 | 78.7 |
87 | TraesCS1B01G117300 | chr7B | 76.129 | 155 | 29 | 8 | 475 | 625 | 591948585 | 591948735 | 1.160000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G117300 | chr1B | 137448591 | 137451610 | 3019 | True | 5578.000000 | 5578 | 100.000000 | 1 | 3020 | 1 | chr1B.!!$R2 | 3019 |
1 | TraesCS1B01G117300 | chr1B | 137613308 | 137614685 | 1377 | False | 2242.000000 | 2242 | 96.229000 | 731 | 2092 | 1 | chr1B.!!$F1 | 1361 |
2 | TraesCS1B01G117300 | chr1B | 137176063 | 137182302 | 6239 | True | 886.250000 | 2067 | 91.967000 | 1 | 2790 | 4 | chr1B.!!$R4 | 2789 |
3 | TraesCS1B01G117300 | chr1D | 84891509 | 84892771 | 1262 | False | 1869.000000 | 1869 | 93.224000 | 731 | 2014 | 1 | chr1D.!!$F1 | 1283 |
4 | TraesCS1B01G117300 | chr1D | 84726204 | 84728726 | 2522 | True | 845.000000 | 1842 | 90.383000 | 731 | 3010 | 3 | chr1D.!!$R5 | 2279 |
5 | TraesCS1B01G117300 | chr1D | 84613652 | 84615757 | 2105 | True | 702.500000 | 1930 | 89.567750 | 731 | 3003 | 4 | chr1D.!!$R4 | 2272 |
6 | TraesCS1B01G117300 | chr1D | 84571160 | 84573501 | 2341 | True | 239.333333 | 405 | 87.288333 | 1858 | 3011 | 3 | chr1D.!!$R3 | 1153 |
7 | TraesCS1B01G117300 | chr1A | 79110399 | 79111449 | 1050 | False | 1520.000000 | 1520 | 92.617000 | 795 | 1863 | 1 | chr1A.!!$F1 | 1068 |
8 | TraesCS1B01G117300 | chr1A | 78956600 | 78960509 | 3909 | True | 607.250000 | 898 | 89.583750 | 1 | 3003 | 4 | chr1A.!!$R3 | 3002 |
9 | TraesCS1B01G117300 | chr1A | 78548936 | 78551365 | 2429 | True | 395.485714 | 1744 | 91.447286 | 731 | 2913 | 7 | chr1A.!!$R2 | 2182 |
10 | TraesCS1B01G117300 | chr2A | 611763820 | 611764581 | 761 | False | 773.000000 | 773 | 84.918000 | 839 | 1626 | 1 | chr2A.!!$F1 | 787 |
11 | TraesCS1B01G117300 | chr2D | 470200444 | 470201642 | 1198 | False | 646.000000 | 767 | 85.887000 | 839 | 2014 | 2 | chr2D.!!$F5 | 1175 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
662 | 666 | 0.035739 | GGCAACGGACCCTCAGTTAA | 59.964 | 55.0 | 0.0 | 0.0 | 33.18 | 2.01 | F |
698 | 702 | 0.753867 | TGGCTAAGTGACGTGTTCCA | 59.246 | 50.0 | 0.0 | 0.0 | 0.00 | 3.53 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1506 | 2291 | 0.676782 | GTAACCAATGGTCGCAGCCT | 60.677 | 55.0 | 4.95 | 0.00 | 33.12 | 4.58 | R |
2668 | 5827 | 1.035139 | CAGGGCAACAAGACTTGCTT | 58.965 | 50.0 | 15.24 | 6.21 | 45.07 | 3.91 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 7.458409 | AGACCGTCTACTACATCAAAGTTTA | 57.542 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
29 | 30 | 5.809051 | CCGTCTACTACATCAAAGTTTACCC | 59.191 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
36 | 37 | 1.061546 | TCAAAGTTTACCCGGCTCCT | 58.938 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
37 | 38 | 1.422402 | TCAAAGTTTACCCGGCTCCTT | 59.578 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
38 | 39 | 1.539827 | CAAAGTTTACCCGGCTCCTTG | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
39 | 40 | 0.608308 | AAGTTTACCCGGCTCCTTGC | 60.608 | 55.000 | 0.00 | 0.00 | 41.94 | 4.01 |
46 | 47 | 2.103934 | CGGCTCCTTGCGAGAGAG | 59.896 | 66.667 | 1.22 | 8.65 | 41.63 | 3.20 |
57 | 58 | 2.121538 | CGAGAGAGGGGCGATGACA | 61.122 | 63.158 | 0.00 | 0.00 | 0.00 | 3.58 |
110 | 111 | 2.181021 | CGTCGCTAGGTGGTCCAC | 59.819 | 66.667 | 14.13 | 14.13 | 35.89 | 4.02 |
111 | 112 | 2.341101 | CGTCGCTAGGTGGTCCACT | 61.341 | 63.158 | 21.40 | 10.13 | 34.40 | 4.00 |
127 | 128 | 3.751698 | GTCCACTGACCTGGTTGTAATTC | 59.248 | 47.826 | 0.00 | 0.00 | 35.34 | 2.17 |
139 | 140 | 8.265764 | ACCTGGTTGTAATTCTTATTACCTCTC | 58.734 | 37.037 | 0.00 | 0.00 | 43.56 | 3.20 |
140 | 141 | 7.438459 | CCTGGTTGTAATTCTTATTACCTCTCG | 59.562 | 40.741 | 0.00 | 0.00 | 43.56 | 4.04 |
143 | 144 | 7.763071 | GGTTGTAATTCTTATTACCTCTCGTGT | 59.237 | 37.037 | 0.00 | 0.00 | 43.56 | 4.49 |
152 | 153 | 8.746530 | TCTTATTACCTCTCGTGTTCTTTGTAT | 58.253 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
159 | 160 | 4.154015 | TCTCGTGTTCTTTGTATTGCCATG | 59.846 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
171 | 172 | 7.407393 | TTGTATTGCCATGATTGAGAATGAA | 57.593 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
172 | 173 | 7.591421 | TGTATTGCCATGATTGAGAATGAAT | 57.409 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
602 | 606 | 9.764870 | CAATGTGTATGAAAAAGTAGTCATCAG | 57.235 | 33.333 | 0.00 | 0.00 | 36.00 | 2.90 |
629 | 633 | 9.097257 | ACTCAAATGTTTGAAAATGTTAGTTGG | 57.903 | 29.630 | 9.24 | 0.00 | 45.61 | 3.77 |
637 | 641 | 8.699749 | GTTTGAAAATGTTAGTTGGCTAATCAC | 58.300 | 33.333 | 0.00 | 0.00 | 39.17 | 3.06 |
644 | 648 | 1.004745 | AGTTGGCTAATCACCCACTGG | 59.995 | 52.381 | 0.00 | 0.00 | 37.80 | 4.00 |
659 | 663 | 2.847234 | TGGCAACGGACCCTCAGT | 60.847 | 61.111 | 0.00 | 0.00 | 42.51 | 3.41 |
660 | 664 | 2.430367 | GGCAACGGACCCTCAGTT | 59.570 | 61.111 | 0.00 | 0.00 | 35.22 | 3.16 |
661 | 665 | 1.122632 | TGGCAACGGACCCTCAGTTA | 61.123 | 55.000 | 0.00 | 0.00 | 33.18 | 2.24 |
662 | 666 | 0.035739 | GGCAACGGACCCTCAGTTAA | 59.964 | 55.000 | 0.00 | 0.00 | 33.18 | 2.01 |
696 | 700 | 2.206750 | TGTTGGCTAAGTGACGTGTTC | 58.793 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
697 | 701 | 1.529865 | GTTGGCTAAGTGACGTGTTCC | 59.470 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
698 | 702 | 0.753867 | TGGCTAAGTGACGTGTTCCA | 59.246 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
726 | 730 | 6.590234 | AAAAATCCTCCCTAAATCACACAC | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.82 |
728 | 732 | 3.695830 | TCCTCCCTAAATCACACACAC | 57.304 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
729 | 733 | 2.976185 | TCCTCCCTAAATCACACACACA | 59.024 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
1506 | 2291 | 4.329545 | GAGCCGTTGTGGAGCCCA | 62.330 | 66.667 | 0.00 | 0.00 | 42.00 | 5.36 |
1522 | 2307 | 2.360350 | CAGGCTGCGACCATTGGT | 60.360 | 61.111 | 8.42 | 8.42 | 39.44 | 3.67 |
2014 | 2799 | 1.872952 | TCAGCCGTCTTGTTTGTCATG | 59.127 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
2025 | 2810 | 6.525628 | GTCTTGTTTGTCATGCATAGTTGATG | 59.474 | 38.462 | 0.00 | 0.00 | 38.73 | 3.07 |
2026 | 2811 | 5.313520 | TGTTTGTCATGCATAGTTGATGG | 57.686 | 39.130 | 0.00 | 0.00 | 35.91 | 3.51 |
2029 | 2814 | 6.128035 | TGTTTGTCATGCATAGTTGATGGTAC | 60.128 | 38.462 | 0.00 | 0.00 | 35.91 | 3.34 |
2031 | 2816 | 5.744171 | TGTCATGCATAGTTGATGGTACTT | 58.256 | 37.500 | 0.00 | 0.00 | 35.91 | 2.24 |
2032 | 2817 | 5.817296 | TGTCATGCATAGTTGATGGTACTTC | 59.183 | 40.000 | 0.00 | 0.00 | 35.91 | 3.01 |
2076 | 2970 | 7.989170 | AGTCACTTATGATCAGCAATGTAATGA | 59.011 | 33.333 | 0.09 | 0.00 | 37.14 | 2.57 |
2102 | 3473 | 8.978874 | TTGTAGTCACTTATGCCATATTTGAT | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2103 | 3474 | 8.382030 | TGTAGTCACTTATGCCATATTTGATG | 57.618 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
2185 | 3556 | 4.381292 | GGGAGTCCAAATTCAGATTTGCAG | 60.381 | 45.833 | 12.30 | 0.00 | 46.94 | 4.41 |
2190 | 3561 | 5.178067 | GTCCAAATTCAGATTTGCAGGTTTG | 59.822 | 40.000 | 6.39 | 0.00 | 46.94 | 2.93 |
2325 | 5484 | 1.340017 | GCAGTGGCATCCTAGGAAACA | 60.340 | 52.381 | 17.30 | 12.20 | 40.72 | 2.83 |
2330 | 5489 | 2.768527 | TGGCATCCTAGGAAACAGAGAG | 59.231 | 50.000 | 17.30 | 0.00 | 0.00 | 3.20 |
2332 | 5491 | 3.034635 | GCATCCTAGGAAACAGAGAGGA | 58.965 | 50.000 | 17.30 | 0.00 | 40.52 | 3.71 |
2367 | 5526 | 2.875296 | ACCCAATGCTAGCTGTTGAAA | 58.125 | 42.857 | 25.26 | 3.44 | 0.00 | 2.69 |
2374 | 5533 | 4.292186 | TGCTAGCTGTTGAAAAGATCCT | 57.708 | 40.909 | 17.23 | 0.00 | 0.00 | 3.24 |
2382 | 5541 | 8.814038 | AGCTGTTGAAAAGATCCTTATGTATT | 57.186 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
2383 | 5542 | 9.905713 | AGCTGTTGAAAAGATCCTTATGTATTA | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
2394 | 5553 | 9.447157 | AGATCCTTATGTATTAGTACGTACTCC | 57.553 | 37.037 | 30.53 | 17.11 | 37.73 | 3.85 |
2395 | 5554 | 7.986085 | TCCTTATGTATTAGTACGTACTCCC | 57.014 | 40.000 | 30.53 | 16.79 | 37.73 | 4.30 |
2396 | 5555 | 7.749666 | TCCTTATGTATTAGTACGTACTCCCT | 58.250 | 38.462 | 30.53 | 18.15 | 37.73 | 4.20 |
2397 | 5556 | 7.880195 | TCCTTATGTATTAGTACGTACTCCCTC | 59.120 | 40.741 | 30.53 | 19.09 | 37.73 | 4.30 |
2398 | 5557 | 7.120432 | CCTTATGTATTAGTACGTACTCCCTCC | 59.880 | 44.444 | 30.53 | 16.15 | 37.73 | 4.30 |
2399 | 5558 | 4.380531 | TGTATTAGTACGTACTCCCTCCG | 58.619 | 47.826 | 30.53 | 0.00 | 37.73 | 4.63 |
2400 | 5559 | 3.567478 | ATTAGTACGTACTCCCTCCGT | 57.433 | 47.619 | 30.53 | 8.23 | 37.73 | 4.69 |
2401 | 5560 | 4.689612 | ATTAGTACGTACTCCCTCCGTA | 57.310 | 45.455 | 30.53 | 8.95 | 37.73 | 4.02 |
2402 | 5561 | 4.481368 | TTAGTACGTACTCCCTCCGTAA | 57.519 | 45.455 | 30.53 | 14.46 | 38.62 | 3.18 |
2403 | 5562 | 3.350219 | AGTACGTACTCCCTCCGTAAA | 57.650 | 47.619 | 22.45 | 0.00 | 38.62 | 2.01 |
2404 | 5563 | 3.274288 | AGTACGTACTCCCTCCGTAAAG | 58.726 | 50.000 | 22.45 | 0.00 | 38.62 | 1.85 |
2405 | 5564 | 2.496899 | ACGTACTCCCTCCGTAAAGA | 57.503 | 50.000 | 0.00 | 0.00 | 32.22 | 2.52 |
2406 | 5565 | 2.795329 | ACGTACTCCCTCCGTAAAGAA | 58.205 | 47.619 | 0.00 | 0.00 | 32.22 | 2.52 |
2407 | 5566 | 3.157087 | ACGTACTCCCTCCGTAAAGAAA | 58.843 | 45.455 | 0.00 | 0.00 | 32.22 | 2.52 |
2408 | 5567 | 3.766051 | ACGTACTCCCTCCGTAAAGAAAT | 59.234 | 43.478 | 0.00 | 0.00 | 32.22 | 2.17 |
2409 | 5568 | 4.949856 | ACGTACTCCCTCCGTAAAGAAATA | 59.050 | 41.667 | 0.00 | 0.00 | 32.22 | 1.40 |
2410 | 5569 | 5.595952 | ACGTACTCCCTCCGTAAAGAAATAT | 59.404 | 40.000 | 0.00 | 0.00 | 32.22 | 1.28 |
2411 | 5570 | 6.772716 | ACGTACTCCCTCCGTAAAGAAATATA | 59.227 | 38.462 | 0.00 | 0.00 | 32.22 | 0.86 |
2412 | 5571 | 7.285401 | ACGTACTCCCTCCGTAAAGAAATATAA | 59.715 | 37.037 | 0.00 | 0.00 | 32.22 | 0.98 |
2413 | 5572 | 7.806960 | CGTACTCCCTCCGTAAAGAAATATAAG | 59.193 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
2414 | 5573 | 7.909485 | ACTCCCTCCGTAAAGAAATATAAGA | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2415 | 5574 | 7.724287 | ACTCCCTCCGTAAAGAAATATAAGAC | 58.276 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2416 | 5575 | 7.564292 | ACTCCCTCCGTAAAGAAATATAAGACT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
2417 | 5576 | 9.075678 | CTCCCTCCGTAAAGAAATATAAGACTA | 57.924 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2418 | 5577 | 9.075678 | TCCCTCCGTAAAGAAATATAAGACTAG | 57.924 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2419 | 5578 | 9.075678 | CCCTCCGTAAAGAAATATAAGACTAGA | 57.924 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2432 | 5591 | 9.668497 | AATATAAGACTAGAAACCCAAACACTC | 57.332 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2433 | 5592 | 5.632034 | AAGACTAGAAACCCAAACACTCT | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
2434 | 5593 | 5.632034 | AGACTAGAAACCCAAACACTCTT | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
2435 | 5594 | 6.742559 | AGACTAGAAACCCAAACACTCTTA | 57.257 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
2436 | 5595 | 7.317722 | AGACTAGAAACCCAAACACTCTTAT | 57.682 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2437 | 5596 | 8.431910 | AGACTAGAAACCCAAACACTCTTATA | 57.568 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2438 | 5597 | 9.047947 | AGACTAGAAACCCAAACACTCTTATAT | 57.952 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2439 | 5598 | 9.668497 | GACTAGAAACCCAAACACTCTTATATT | 57.332 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2442 | 5601 | 8.706322 | AGAAACCCAAACACTCTTATATTTGT | 57.294 | 30.769 | 0.00 | 0.00 | 31.48 | 2.83 |
2443 | 5602 | 9.143155 | AGAAACCCAAACACTCTTATATTTGTT | 57.857 | 29.630 | 0.00 | 0.00 | 33.59 | 2.83 |
2444 | 5603 | 9.758651 | GAAACCCAAACACTCTTATATTTGTTT | 57.241 | 29.630 | 0.00 | 0.00 | 41.69 | 2.83 |
2447 | 5606 | 9.357161 | ACCCAAACACTCTTATATTTGTTTACA | 57.643 | 29.630 | 0.00 | 0.00 | 39.56 | 2.41 |
2448 | 5607 | 9.840427 | CCCAAACACTCTTATATTTGTTTACAG | 57.160 | 33.333 | 0.00 | 0.00 | 39.56 | 2.74 |
2452 | 5611 | 9.449719 | AACACTCTTATATTTGTTTACAGAGGG | 57.550 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
2453 | 5612 | 8.822805 | ACACTCTTATATTTGTTTACAGAGGGA | 58.177 | 33.333 | 2.59 | 0.00 | 0.00 | 4.20 |
2454 | 5613 | 9.319143 | CACTCTTATATTTGTTTACAGAGGGAG | 57.681 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2455 | 5614 | 9.047947 | ACTCTTATATTTGTTTACAGAGGGAGT | 57.952 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2462 | 5621 | 7.607615 | TTTGTTTACAGAGGGAGTAGTAAGT | 57.392 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2463 | 5622 | 8.710749 | TTTGTTTACAGAGGGAGTAGTAAGTA | 57.289 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2464 | 5623 | 7.934855 | TGTTTACAGAGGGAGTAGTAAGTAG | 57.065 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2465 | 5624 | 7.465116 | TGTTTACAGAGGGAGTAGTAAGTAGT | 58.535 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
2466 | 5625 | 8.605947 | TGTTTACAGAGGGAGTAGTAAGTAGTA | 58.394 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2467 | 5626 | 8.888716 | GTTTACAGAGGGAGTAGTAAGTAGTAC | 58.111 | 40.741 | 0.00 | 0.00 | 33.35 | 2.73 |
2468 | 5627 | 6.889595 | ACAGAGGGAGTAGTAAGTAGTACT | 57.110 | 41.667 | 0.00 | 0.00 | 45.42 | 2.73 |
2475 | 5634 | 5.289083 | AGTAGTAAGTAGTACTCCCTCCG | 57.711 | 47.826 | 2.58 | 0.00 | 42.37 | 4.63 |
2476 | 5635 | 4.719273 | AGTAGTAAGTAGTACTCCCTCCGT | 59.281 | 45.833 | 2.58 | 0.00 | 42.37 | 4.69 |
2477 | 5636 | 4.582973 | AGTAAGTAGTACTCCCTCCGTT | 57.417 | 45.455 | 2.58 | 0.00 | 38.84 | 4.44 |
2478 | 5637 | 4.522114 | AGTAAGTAGTACTCCCTCCGTTC | 58.478 | 47.826 | 2.58 | 0.00 | 38.84 | 3.95 |
2479 | 5638 | 2.433662 | AGTAGTACTCCCTCCGTTCC | 57.566 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2480 | 5639 | 1.921748 | AGTAGTACTCCCTCCGTTCCT | 59.078 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2481 | 5640 | 3.118531 | AGTAGTACTCCCTCCGTTCCTA | 58.881 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2482 | 5641 | 3.525199 | AGTAGTACTCCCTCCGTTCCTAA | 59.475 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
2483 | 5642 | 3.463048 | AGTACTCCCTCCGTTCCTAAA | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
2484 | 5643 | 3.991683 | AGTACTCCCTCCGTTCCTAAAT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
2485 | 5644 | 5.134725 | AGTACTCCCTCCGTTCCTAAATA | 57.865 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2486 | 5645 | 4.892345 | AGTACTCCCTCCGTTCCTAAATAC | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
2487 | 5646 | 3.991683 | ACTCCCTCCGTTCCTAAATACT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
2488 | 5647 | 4.359996 | ACTCCCTCCGTTCCTAAATACTT | 58.640 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2489 | 5648 | 4.161754 | ACTCCCTCCGTTCCTAAATACTTG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
2490 | 5649 | 4.098894 | TCCCTCCGTTCCTAAATACTTGT | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2491 | 5650 | 4.161001 | TCCCTCCGTTCCTAAATACTTGTC | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2492 | 5651 | 4.161754 | CCCTCCGTTCCTAAATACTTGTCT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
2493 | 5652 | 5.338137 | CCCTCCGTTCCTAAATACTTGTCTT | 60.338 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2494 | 5653 | 6.171213 | CCTCCGTTCCTAAATACTTGTCTTT | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2495 | 5654 | 6.313164 | CCTCCGTTCCTAAATACTTGTCTTTC | 59.687 | 42.308 | 0.00 | 0.00 | 0.00 | 2.62 |
2496 | 5655 | 7.001099 | TCCGTTCCTAAATACTTGTCTTTCT | 57.999 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2497 | 5656 | 8.125978 | TCCGTTCCTAAATACTTGTCTTTCTA | 57.874 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2498 | 5657 | 8.248945 | TCCGTTCCTAAATACTTGTCTTTCTAG | 58.751 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2499 | 5658 | 8.248945 | CCGTTCCTAAATACTTGTCTTTCTAGA | 58.751 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2500 | 5659 | 9.291664 | CGTTCCTAAATACTTGTCTTTCTAGAG | 57.708 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2510 | 5669 | 8.964476 | ACTTGTCTTTCTAGAGATTTCAACAA | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
2511 | 5670 | 9.050601 | ACTTGTCTTTCTAGAGATTTCAACAAG | 57.949 | 33.333 | 18.42 | 18.42 | 32.73 | 3.16 |
2512 | 5671 | 8.964476 | TTGTCTTTCTAGAGATTTCAACAAGT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
2513 | 5672 | 8.370493 | TGTCTTTCTAGAGATTTCAACAAGTG | 57.630 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2514 | 5673 | 7.987458 | TGTCTTTCTAGAGATTTCAACAAGTGT | 59.013 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2515 | 5674 | 8.491950 | GTCTTTCTAGAGATTTCAACAAGTGTC | 58.508 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
2516 | 5675 | 8.424918 | TCTTTCTAGAGATTTCAACAAGTGTCT | 58.575 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2517 | 5676 | 9.698309 | CTTTCTAGAGATTTCAACAAGTGTCTA | 57.302 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2518 | 5677 | 9.477484 | TTTCTAGAGATTTCAACAAGTGTCTAC | 57.523 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2519 | 5678 | 8.178313 | TCTAGAGATTTCAACAAGTGTCTACA | 57.822 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
2520 | 5679 | 8.807118 | TCTAGAGATTTCAACAAGTGTCTACAT | 58.193 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2522 | 5681 | 8.764524 | AGAGATTTCAACAAGTGTCTACATAC | 57.235 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
2523 | 5682 | 7.542477 | AGAGATTTCAACAAGTGTCTACATACG | 59.458 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
2524 | 5683 | 7.375834 | AGATTTCAACAAGTGTCTACATACGA | 58.624 | 34.615 | 0.00 | 0.00 | 0.00 | 3.43 |
2525 | 5684 | 7.870954 | AGATTTCAACAAGTGTCTACATACGAA | 59.129 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2526 | 5685 | 7.402811 | TTTCAACAAGTGTCTACATACGAAG | 57.597 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2527 | 5686 | 4.921515 | TCAACAAGTGTCTACATACGAAGC | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2528 | 5687 | 4.514781 | ACAAGTGTCTACATACGAAGCA | 57.485 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
2529 | 5688 | 4.878439 | ACAAGTGTCTACATACGAAGCAA | 58.122 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
2530 | 5689 | 5.294356 | ACAAGTGTCTACATACGAAGCAAA | 58.706 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
2531 | 5690 | 5.756347 | ACAAGTGTCTACATACGAAGCAAAA | 59.244 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2532 | 5691 | 6.426937 | ACAAGTGTCTACATACGAAGCAAAAT | 59.573 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2533 | 5692 | 6.408858 | AGTGTCTACATACGAAGCAAAATG | 57.591 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2534 | 5693 | 6.163476 | AGTGTCTACATACGAAGCAAAATGA | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2535 | 5694 | 6.311445 | AGTGTCTACATACGAAGCAAAATGAG | 59.689 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2536 | 5695 | 6.090898 | GTGTCTACATACGAAGCAAAATGAGT | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2537 | 5696 | 6.090763 | TGTCTACATACGAAGCAAAATGAGTG | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
2538 | 5697 | 6.310467 | GTCTACATACGAAGCAAAATGAGTGA | 59.690 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2539 | 5698 | 5.940192 | ACATACGAAGCAAAATGAGTGAA | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
2540 | 5699 | 6.500684 | ACATACGAAGCAAAATGAGTGAAT | 57.499 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2541 | 5700 | 6.546395 | ACATACGAAGCAAAATGAGTGAATC | 58.454 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2542 | 5701 | 6.372659 | ACATACGAAGCAAAATGAGTGAATCT | 59.627 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2543 | 5702 | 7.549134 | ACATACGAAGCAAAATGAGTGAATCTA | 59.451 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2544 | 5703 | 6.992063 | ACGAAGCAAAATGAGTGAATCTAT | 57.008 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2545 | 5704 | 9.764363 | ATACGAAGCAAAATGAGTGAATCTATA | 57.236 | 29.630 | 0.00 | 0.00 | 0.00 | 1.31 |
2546 | 5705 | 7.910304 | ACGAAGCAAAATGAGTGAATCTATAC | 58.090 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
2547 | 5706 | 7.766278 | ACGAAGCAAAATGAGTGAATCTATACT | 59.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2548 | 5707 | 8.607459 | CGAAGCAAAATGAGTGAATCTATACTT | 58.393 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2583 | 5742 | 9.985318 | GTCTATATACATTCGTATGTGTAGTCC | 57.015 | 37.037 | 16.91 | 8.39 | 44.56 | 3.85 |
2584 | 5743 | 9.729281 | TCTATATACATTCGTATGTGTAGTCCA | 57.271 | 33.333 | 16.91 | 0.00 | 44.56 | 4.02 |
2588 | 5747 | 6.662414 | ACATTCGTATGTGTAGTCCATTTG | 57.338 | 37.500 | 6.89 | 0.00 | 43.29 | 2.32 |
2589 | 5748 | 6.403049 | ACATTCGTATGTGTAGTCCATTTGA | 58.597 | 36.000 | 6.89 | 0.00 | 43.29 | 2.69 |
2590 | 5749 | 6.876789 | ACATTCGTATGTGTAGTCCATTTGAA | 59.123 | 34.615 | 6.89 | 0.00 | 43.29 | 2.69 |
2591 | 5750 | 7.389330 | ACATTCGTATGTGTAGTCCATTTGAAA | 59.611 | 33.333 | 6.89 | 0.00 | 43.29 | 2.69 |
2592 | 5751 | 7.915293 | TTCGTATGTGTAGTCCATTTGAAAT | 57.085 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2593 | 5752 | 7.534085 | TCGTATGTGTAGTCCATTTGAAATC | 57.466 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2594 | 5753 | 7.327975 | TCGTATGTGTAGTCCATTTGAAATCT | 58.672 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2595 | 5754 | 7.491372 | TCGTATGTGTAGTCCATTTGAAATCTC | 59.509 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
2596 | 5755 | 7.492669 | CGTATGTGTAGTCCATTTGAAATCTCT | 59.507 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
2597 | 5756 | 9.817809 | GTATGTGTAGTCCATTTGAAATCTCTA | 57.182 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2598 | 5757 | 8.954950 | ATGTGTAGTCCATTTGAAATCTCTAG | 57.045 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2599 | 5758 | 8.134202 | TGTGTAGTCCATTTGAAATCTCTAGA | 57.866 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2600 | 5759 | 8.593679 | TGTGTAGTCCATTTGAAATCTCTAGAA | 58.406 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2601 | 5760 | 9.436957 | GTGTAGTCCATTTGAAATCTCTAGAAA | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2602 | 5761 | 9.658799 | TGTAGTCCATTTGAAATCTCTAGAAAG | 57.341 | 33.333 | 0.00 | 0.00 | 0.00 | 2.62 |
2603 | 5762 | 9.877178 | GTAGTCCATTTGAAATCTCTAGAAAGA | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2604 | 5763 | 8.785329 | AGTCCATTTGAAATCTCTAGAAAGAC | 57.215 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2605 | 5764 | 8.378565 | AGTCCATTTGAAATCTCTAGAAAGACA | 58.621 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2606 | 5765 | 9.003658 | GTCCATTTGAAATCTCTAGAAAGACAA | 57.996 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2607 | 5766 | 9.573166 | TCCATTTGAAATCTCTAGAAAGACAAA | 57.427 | 29.630 | 0.00 | 4.41 | 0.00 | 2.83 |
2620 | 5779 | 9.595823 | TCTAGAAAGACAAATATTTAGGAACGG | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
2621 | 5780 | 9.595823 | CTAGAAAGACAAATATTTAGGAACGGA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
2622 | 5781 | 8.494016 | AGAAAGACAAATATTTAGGAACGGAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
2623 | 5782 | 7.553044 | AGAAAGACAAATATTTAGGAACGGAGG | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2624 | 5783 | 5.681639 | AGACAAATATTTAGGAACGGAGGG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2625 | 5784 | 5.427481 | AGACAAATATTTAGGAACGGAGGGA | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2626 | 5785 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2668 | 5827 | 2.487265 | GCCTGAAACACCTCCTGAAGAA | 60.487 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2707 | 5866 | 3.164268 | TGGAGTGCATATTGCCTTTGTT | 58.836 | 40.909 | 0.00 | 0.00 | 44.23 | 2.83 |
2737 | 5896 | 5.277825 | TCAAACCAAGCATTTTGTAGAACG | 58.722 | 37.500 | 0.00 | 0.00 | 34.81 | 3.95 |
2819 | 5979 | 6.860539 | TGACGTGTTCATTGTCAAATATTTGG | 59.139 | 34.615 | 24.40 | 10.77 | 39.50 | 3.28 |
2860 | 9836 | 7.337938 | TCTTCTAATTGATGTGGAGTGCATAA | 58.662 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
2909 | 9887 | 3.524789 | TCACTGGGAATGATGTTCATCCT | 59.475 | 43.478 | 9.83 | 0.00 | 35.76 | 3.24 |
2941 | 9919 | 3.202906 | TCTATTGATGGGCGCTTGTTAC | 58.797 | 45.455 | 7.64 | 0.00 | 0.00 | 2.50 |
2945 | 9923 | 1.009829 | GATGGGCGCTTGTTACTGAG | 58.990 | 55.000 | 7.64 | 0.00 | 0.00 | 3.35 |
2963 | 9941 | 1.053264 | AGTGCTCCAGGAGGGCATAG | 61.053 | 60.000 | 18.83 | 0.00 | 41.19 | 2.23 |
2970 | 9948 | 1.694169 | AGGAGGGCATAGTGGGTGG | 60.694 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
2971 | 9949 | 1.692749 | GGAGGGCATAGTGGGTGGA | 60.693 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
2976 | 9954 | 1.691482 | GGGCATAGTGGGTGGACTAGA | 60.691 | 57.143 | 0.00 | 0.00 | 31.94 | 2.43 |
2977 | 9955 | 2.116238 | GGCATAGTGGGTGGACTAGAA | 58.884 | 52.381 | 0.00 | 0.00 | 31.94 | 2.10 |
2978 | 9956 | 2.504175 | GGCATAGTGGGTGGACTAGAAA | 59.496 | 50.000 | 0.00 | 0.00 | 31.94 | 2.52 |
3011 | 10151 | 7.778470 | AATGCATTCAAAAGTTACGGAAAAA | 57.222 | 28.000 | 5.99 | 0.00 | 0.00 | 1.94 |
3012 | 10152 | 6.820470 | TGCATTCAAAAGTTACGGAAAAAG | 57.180 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
3013 | 10153 | 6.565234 | TGCATTCAAAAGTTACGGAAAAAGA | 58.435 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3015 | 10155 | 7.009723 | TGCATTCAAAAGTTACGGAAAAAGAAC | 59.990 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3016 | 10156 | 7.516155 | GCATTCAAAAGTTACGGAAAAAGAACC | 60.516 | 37.037 | 0.00 | 0.00 | 0.00 | 3.62 |
3017 | 10157 | 6.762702 | TCAAAAGTTACGGAAAAAGAACCT | 57.237 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
3018 | 10158 | 7.862512 | TCAAAAGTTACGGAAAAAGAACCTA | 57.137 | 32.000 | 0.00 | 0.00 | 0.00 | 3.08 |
3019 | 10159 | 8.454570 | TCAAAAGTTACGGAAAAAGAACCTAT | 57.545 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
7 | 8 | 5.809051 | CCGGGTAAACTTTGATGTAGTAGAC | 59.191 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
17 | 18 | 1.061546 | AGGAGCCGGGTAAACTTTGA | 58.938 | 50.000 | 5.91 | 0.00 | 0.00 | 2.69 |
29 | 30 | 2.103934 | CTCTCTCGCAAGGAGCCG | 59.896 | 66.667 | 0.00 | 0.00 | 42.82 | 5.52 |
36 | 37 | 2.759973 | ATCGCCCCTCTCTCGCAA | 60.760 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
37 | 38 | 3.531207 | CATCGCCCCTCTCTCGCA | 61.531 | 66.667 | 0.00 | 0.00 | 0.00 | 5.10 |
38 | 39 | 3.219928 | TCATCGCCCCTCTCTCGC | 61.220 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
39 | 40 | 2.069465 | CTGTCATCGCCCCTCTCTCG | 62.069 | 65.000 | 0.00 | 0.00 | 0.00 | 4.04 |
80 | 81 | 0.387367 | AGCGACGACTACAAGCACTG | 60.387 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
110 | 111 | 8.047310 | AGGTAATAAGAATTACAACCAGGTCAG | 58.953 | 37.037 | 9.72 | 0.00 | 46.28 | 3.51 |
111 | 112 | 7.924541 | AGGTAATAAGAATTACAACCAGGTCA | 58.075 | 34.615 | 9.72 | 0.00 | 46.28 | 4.02 |
121 | 122 | 9.583765 | AAGAACACGAGAGGTAATAAGAATTAC | 57.416 | 33.333 | 0.00 | 0.60 | 44.55 | 1.89 |
127 | 128 | 8.928270 | ATACAAAGAACACGAGAGGTAATAAG | 57.072 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
139 | 140 | 4.418013 | TCATGGCAATACAAAGAACACG | 57.582 | 40.909 | 0.00 | 0.00 | 0.00 | 4.49 |
140 | 141 | 6.389091 | TCAATCATGGCAATACAAAGAACAC | 58.611 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
143 | 144 | 7.465353 | TTCTCAATCATGGCAATACAAAGAA | 57.535 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
152 | 153 | 8.357402 | CAATCTATTCATTCTCAATCATGGCAA | 58.643 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
331 | 333 | 9.944663 | TTGTGTTTGATGACTAGTTTTTCATAC | 57.055 | 29.630 | 0.00 | 6.99 | 32.43 | 2.39 |
610 | 614 | 8.417106 | TGATTAGCCAACTAACATTTTCAAACA | 58.583 | 29.630 | 0.00 | 0.00 | 41.12 | 2.83 |
611 | 615 | 8.699749 | GTGATTAGCCAACTAACATTTTCAAAC | 58.300 | 33.333 | 0.00 | 0.00 | 41.12 | 2.93 |
614 | 618 | 6.071616 | GGGTGATTAGCCAACTAACATTTTCA | 60.072 | 38.462 | 0.00 | 0.00 | 44.02 | 2.69 |
615 | 619 | 6.330278 | GGGTGATTAGCCAACTAACATTTTC | 58.670 | 40.000 | 0.00 | 0.00 | 44.02 | 2.29 |
629 | 633 | 0.811281 | GTTGCCAGTGGGTGATTAGC | 59.189 | 55.000 | 12.15 | 0.00 | 36.17 | 3.09 |
644 | 648 | 2.109425 | ATTAACTGAGGGTCCGTTGC | 57.891 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
726 | 730 | 1.363744 | GAGACGAGCCCTTGAATGTG | 58.636 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
728 | 732 | 0.250234 | TGGAGACGAGCCCTTGAATG | 59.750 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
729 | 733 | 0.984230 | TTGGAGACGAGCCCTTGAAT | 59.016 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1506 | 2291 | 0.676782 | GTAACCAATGGTCGCAGCCT | 60.677 | 55.000 | 4.95 | 0.00 | 33.12 | 4.58 |
1522 | 2307 | 3.472726 | GGGGATCCACGGGCGTAA | 61.473 | 66.667 | 15.23 | 0.00 | 0.00 | 3.18 |
2014 | 2799 | 4.191544 | TGCTGAAGTACCATCAACTATGC | 58.808 | 43.478 | 1.16 | 1.84 | 33.92 | 3.14 |
2025 | 2810 | 7.568199 | ACAACCATTATATTGCTGAAGTACC | 57.432 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2026 | 2811 | 9.326413 | ACTACAACCATTATATTGCTGAAGTAC | 57.674 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2029 | 2814 | 8.338259 | GTGACTACAACCATTATATTGCTGAAG | 58.662 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
2031 | 2816 | 7.564793 | AGTGACTACAACCATTATATTGCTGA | 58.435 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
2032 | 2817 | 7.792374 | AGTGACTACAACCATTATATTGCTG | 57.208 | 36.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2076 | 2970 | 8.978874 | TCAAATATGGCATAAGTGACTACAAT | 57.021 | 30.769 | 11.86 | 0.00 | 33.19 | 2.71 |
2102 | 3473 | 9.515020 | GCTGCAATAGTGTATTTATTTTTAGCA | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 3.49 |
2103 | 3474 | 9.515020 | TGCTGCAATAGTGTATTTATTTTTAGC | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 3.09 |
2144 | 3515 | 6.286240 | ACTCCCTTGCTATTTTGGAATTTC | 57.714 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2150 | 3521 | 3.085952 | TGGACTCCCTTGCTATTTTGG | 57.914 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
2159 | 3530 | 5.717119 | CAAATCTGAATTTGGACTCCCTTG | 58.283 | 41.667 | 3.49 | 0.00 | 45.30 | 3.61 |
2185 | 3556 | 4.364415 | TTTACACTGTCACAAGCAAACC | 57.636 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
2190 | 3561 | 4.351192 | CCTTGTTTTACACTGTCACAAGC | 58.649 | 43.478 | 16.58 | 1.63 | 41.96 | 4.01 |
2325 | 5484 | 7.458170 | TGGGTTTCTAGTCTTTTATTCCTCTCT | 59.542 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
2330 | 5489 | 7.122799 | AGCATTGGGTTTCTAGTCTTTTATTCC | 59.877 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2332 | 5491 | 9.178758 | CTAGCATTGGGTTTCTAGTCTTTTATT | 57.821 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2374 | 5533 | 6.650807 | CGGAGGGAGTACGTACTAATACATAA | 59.349 | 42.308 | 27.44 | 0.00 | 36.50 | 1.90 |
2382 | 5541 | 4.161565 | TCTTTACGGAGGGAGTACGTACTA | 59.838 | 45.833 | 27.44 | 7.33 | 42.03 | 1.82 |
2383 | 5542 | 3.055094 | TCTTTACGGAGGGAGTACGTACT | 60.055 | 47.826 | 27.71 | 27.71 | 42.03 | 2.73 |
2384 | 5543 | 3.270877 | TCTTTACGGAGGGAGTACGTAC | 58.729 | 50.000 | 18.10 | 18.10 | 42.03 | 3.67 |
2385 | 5544 | 3.627395 | TCTTTACGGAGGGAGTACGTA | 57.373 | 47.619 | 0.00 | 0.00 | 41.53 | 3.57 |
2386 | 5545 | 2.496899 | TCTTTACGGAGGGAGTACGT | 57.503 | 50.000 | 0.00 | 0.00 | 43.88 | 3.57 |
2387 | 5546 | 3.855689 | TTTCTTTACGGAGGGAGTACG | 57.144 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
2388 | 5547 | 8.854117 | TCTTATATTTCTTTACGGAGGGAGTAC | 58.146 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2389 | 5548 | 8.854117 | GTCTTATATTTCTTTACGGAGGGAGTA | 58.146 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2390 | 5549 | 7.564292 | AGTCTTATATTTCTTTACGGAGGGAGT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
2391 | 5550 | 7.953752 | AGTCTTATATTTCTTTACGGAGGGAG | 58.046 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2392 | 5551 | 7.909485 | AGTCTTATATTTCTTTACGGAGGGA | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2393 | 5552 | 9.075678 | TCTAGTCTTATATTTCTTTACGGAGGG | 57.924 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2406 | 5565 | 9.668497 | GAGTGTTTGGGTTTCTAGTCTTATATT | 57.332 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2407 | 5566 | 9.047947 | AGAGTGTTTGGGTTTCTAGTCTTATAT | 57.952 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2408 | 5567 | 8.431910 | AGAGTGTTTGGGTTTCTAGTCTTATA | 57.568 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2409 | 5568 | 7.317722 | AGAGTGTTTGGGTTTCTAGTCTTAT | 57.682 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2410 | 5569 | 6.742559 | AGAGTGTTTGGGTTTCTAGTCTTA | 57.257 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
2411 | 5570 | 5.632034 | AGAGTGTTTGGGTTTCTAGTCTT | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
2412 | 5571 | 5.632034 | AAGAGTGTTTGGGTTTCTAGTCT | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
2413 | 5572 | 9.668497 | AATATAAGAGTGTTTGGGTTTCTAGTC | 57.332 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2416 | 5575 | 9.802039 | ACAAATATAAGAGTGTTTGGGTTTCTA | 57.198 | 29.630 | 0.00 | 0.00 | 36.23 | 2.10 |
2417 | 5576 | 8.706322 | ACAAATATAAGAGTGTTTGGGTTTCT | 57.294 | 30.769 | 0.00 | 0.00 | 36.23 | 2.52 |
2418 | 5577 | 9.758651 | AAACAAATATAAGAGTGTTTGGGTTTC | 57.241 | 29.630 | 0.16 | 0.00 | 41.40 | 2.78 |
2421 | 5580 | 9.357161 | TGTAAACAAATATAAGAGTGTTTGGGT | 57.643 | 29.630 | 10.11 | 0.14 | 42.52 | 4.51 |
2422 | 5581 | 9.840427 | CTGTAAACAAATATAAGAGTGTTTGGG | 57.160 | 33.333 | 10.11 | 0.00 | 42.52 | 4.12 |
2426 | 5585 | 9.449719 | CCCTCTGTAAACAAATATAAGAGTGTT | 57.550 | 33.333 | 0.00 | 0.00 | 35.77 | 3.32 |
2427 | 5586 | 8.822805 | TCCCTCTGTAAACAAATATAAGAGTGT | 58.177 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2428 | 5587 | 9.319143 | CTCCCTCTGTAAACAAATATAAGAGTG | 57.681 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2429 | 5588 | 9.047947 | ACTCCCTCTGTAAACAAATATAAGAGT | 57.952 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
2436 | 5595 | 9.317827 | ACTTACTACTCCCTCTGTAAACAAATA | 57.682 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2437 | 5596 | 8.203681 | ACTTACTACTCCCTCTGTAAACAAAT | 57.796 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2438 | 5597 | 7.607615 | ACTTACTACTCCCTCTGTAAACAAA | 57.392 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2439 | 5598 | 7.946776 | ACTACTTACTACTCCCTCTGTAAACAA | 59.053 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
2440 | 5599 | 7.465116 | ACTACTTACTACTCCCTCTGTAAACA | 58.535 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
2441 | 5600 | 7.936496 | ACTACTTACTACTCCCTCTGTAAAC | 57.064 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2442 | 5601 | 8.830741 | AGTACTACTTACTACTCCCTCTGTAAA | 58.169 | 37.037 | 0.00 | 0.00 | 39.45 | 2.01 |
2443 | 5602 | 8.386012 | AGTACTACTTACTACTCCCTCTGTAA | 57.614 | 38.462 | 0.00 | 0.00 | 39.45 | 2.41 |
2444 | 5603 | 7.986553 | AGTACTACTTACTACTCCCTCTGTA | 57.013 | 40.000 | 0.00 | 0.00 | 39.45 | 2.74 |
2445 | 5604 | 6.888105 | GAGTACTACTTACTACTCCCTCTGT | 58.112 | 44.000 | 0.00 | 0.00 | 41.48 | 3.41 |
2452 | 5611 | 5.163353 | ACGGAGGGAGTACTACTTACTACTC | 60.163 | 48.000 | 4.77 | 1.74 | 41.48 | 2.59 |
2453 | 5612 | 4.719273 | ACGGAGGGAGTACTACTTACTACT | 59.281 | 45.833 | 4.77 | 0.00 | 41.48 | 2.57 |
2454 | 5613 | 5.029807 | ACGGAGGGAGTACTACTTACTAC | 57.970 | 47.826 | 4.77 | 0.00 | 41.48 | 2.73 |
2455 | 5614 | 5.396884 | GGAACGGAGGGAGTACTACTTACTA | 60.397 | 48.000 | 4.77 | 0.00 | 41.48 | 1.82 |
2456 | 5615 | 4.522114 | GAACGGAGGGAGTACTACTTACT | 58.478 | 47.826 | 4.77 | 0.00 | 44.35 | 2.24 |
2457 | 5616 | 3.629855 | GGAACGGAGGGAGTACTACTTAC | 59.370 | 52.174 | 4.77 | 0.00 | 0.00 | 2.34 |
2458 | 5617 | 3.525199 | AGGAACGGAGGGAGTACTACTTA | 59.475 | 47.826 | 4.77 | 0.00 | 0.00 | 2.24 |
2459 | 5618 | 2.311243 | AGGAACGGAGGGAGTACTACTT | 59.689 | 50.000 | 4.77 | 0.00 | 0.00 | 2.24 |
2460 | 5619 | 1.921748 | AGGAACGGAGGGAGTACTACT | 59.078 | 52.381 | 4.77 | 1.85 | 0.00 | 2.57 |
2461 | 5620 | 2.433662 | AGGAACGGAGGGAGTACTAC | 57.566 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2462 | 5621 | 4.591321 | TTTAGGAACGGAGGGAGTACTA | 57.409 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
2463 | 5622 | 3.463048 | TTTAGGAACGGAGGGAGTACT | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
2464 | 5623 | 4.892345 | AGTATTTAGGAACGGAGGGAGTAC | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
2465 | 5624 | 5.134725 | AGTATTTAGGAACGGAGGGAGTA | 57.865 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2466 | 5625 | 3.991683 | AGTATTTAGGAACGGAGGGAGT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2467 | 5626 | 4.161754 | ACAAGTATTTAGGAACGGAGGGAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2468 | 5627 | 4.098894 | ACAAGTATTTAGGAACGGAGGGA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2469 | 5628 | 4.161754 | AGACAAGTATTTAGGAACGGAGGG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2470 | 5629 | 5.340439 | AGACAAGTATTTAGGAACGGAGG | 57.660 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2471 | 5630 | 7.097834 | AGAAAGACAAGTATTTAGGAACGGAG | 58.902 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2472 | 5631 | 7.001099 | AGAAAGACAAGTATTTAGGAACGGA | 57.999 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2473 | 5632 | 8.248945 | TCTAGAAAGACAAGTATTTAGGAACGG | 58.751 | 37.037 | 0.00 | 0.00 | 0.00 | 4.44 |
2474 | 5633 | 9.291664 | CTCTAGAAAGACAAGTATTTAGGAACG | 57.708 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
2485 | 5644 | 8.964476 | TTGTTGAAATCTCTAGAAAGACAAGT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
2486 | 5645 | 9.050601 | ACTTGTTGAAATCTCTAGAAAGACAAG | 57.949 | 33.333 | 17.75 | 17.75 | 33.18 | 3.16 |
2487 | 5646 | 8.830580 | CACTTGTTGAAATCTCTAGAAAGACAA | 58.169 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2488 | 5647 | 7.987458 | ACACTTGTTGAAATCTCTAGAAAGACA | 59.013 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2489 | 5648 | 8.371770 | ACACTTGTTGAAATCTCTAGAAAGAC | 57.628 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2490 | 5649 | 8.424918 | AGACACTTGTTGAAATCTCTAGAAAGA | 58.575 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2491 | 5650 | 8.600449 | AGACACTTGTTGAAATCTCTAGAAAG | 57.400 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
2492 | 5651 | 9.477484 | GTAGACACTTGTTGAAATCTCTAGAAA | 57.523 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2493 | 5652 | 8.638873 | TGTAGACACTTGTTGAAATCTCTAGAA | 58.361 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2494 | 5653 | 8.178313 | TGTAGACACTTGTTGAAATCTCTAGA | 57.822 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2495 | 5654 | 8.994429 | ATGTAGACACTTGTTGAAATCTCTAG | 57.006 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2496 | 5655 | 9.856488 | GTATGTAGACACTTGTTGAAATCTCTA | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2497 | 5656 | 7.542477 | CGTATGTAGACACTTGTTGAAATCTCT | 59.458 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
2498 | 5657 | 7.541091 | TCGTATGTAGACACTTGTTGAAATCTC | 59.459 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
2499 | 5658 | 7.375834 | TCGTATGTAGACACTTGTTGAAATCT | 58.624 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2500 | 5659 | 7.576750 | TCGTATGTAGACACTTGTTGAAATC | 57.423 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2501 | 5660 | 7.360101 | GCTTCGTATGTAGACACTTGTTGAAAT | 60.360 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
2502 | 5661 | 6.073980 | GCTTCGTATGTAGACACTTGTTGAAA | 60.074 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
2503 | 5662 | 5.404366 | GCTTCGTATGTAGACACTTGTTGAA | 59.596 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2504 | 5663 | 4.921515 | GCTTCGTATGTAGACACTTGTTGA | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2505 | 5664 | 4.684242 | TGCTTCGTATGTAGACACTTGTTG | 59.316 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2506 | 5665 | 4.878439 | TGCTTCGTATGTAGACACTTGTT | 58.122 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2507 | 5666 | 4.514781 | TGCTTCGTATGTAGACACTTGT | 57.485 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2508 | 5667 | 5.839262 | TTTGCTTCGTATGTAGACACTTG | 57.161 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2509 | 5668 | 6.649141 | TCATTTTGCTTCGTATGTAGACACTT | 59.351 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2510 | 5669 | 6.163476 | TCATTTTGCTTCGTATGTAGACACT | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2511 | 5670 | 6.090898 | ACTCATTTTGCTTCGTATGTAGACAC | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
2512 | 5671 | 6.090763 | CACTCATTTTGCTTCGTATGTAGACA | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2513 | 5672 | 6.310467 | TCACTCATTTTGCTTCGTATGTAGAC | 59.690 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2514 | 5673 | 6.394809 | TCACTCATTTTGCTTCGTATGTAGA | 58.605 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2515 | 5674 | 6.647212 | TCACTCATTTTGCTTCGTATGTAG | 57.353 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2516 | 5675 | 7.549134 | AGATTCACTCATTTTGCTTCGTATGTA | 59.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2517 | 5676 | 5.940192 | TTCACTCATTTTGCTTCGTATGT | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
2518 | 5677 | 6.779117 | AGATTCACTCATTTTGCTTCGTATG | 58.221 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2519 | 5678 | 6.992063 | AGATTCACTCATTTTGCTTCGTAT | 57.008 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2520 | 5679 | 9.031360 | GTATAGATTCACTCATTTTGCTTCGTA | 57.969 | 33.333 | 0.00 | 0.00 | 0.00 | 3.43 |
2521 | 5680 | 6.992063 | ATAGATTCACTCATTTTGCTTCGT | 57.008 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2522 | 5681 | 8.136057 | AGTATAGATTCACTCATTTTGCTTCG | 57.864 | 34.615 | 0.00 | 0.00 | 0.00 | 3.79 |
2557 | 5716 | 9.985318 | GGACTACACATACGAATGTATATAGAC | 57.015 | 37.037 | 0.00 | 0.00 | 44.70 | 2.59 |
2558 | 5717 | 9.729281 | TGGACTACACATACGAATGTATATAGA | 57.271 | 33.333 | 0.00 | 0.00 | 44.70 | 1.98 |
2562 | 5721 | 9.471084 | CAAATGGACTACACATACGAATGTATA | 57.529 | 33.333 | 0.00 | 0.00 | 44.70 | 1.47 |
2563 | 5722 | 8.201464 | TCAAATGGACTACACATACGAATGTAT | 58.799 | 33.333 | 0.00 | 0.00 | 44.70 | 2.29 |
2564 | 5723 | 7.548967 | TCAAATGGACTACACATACGAATGTA | 58.451 | 34.615 | 0.00 | 0.00 | 44.70 | 2.29 |
2566 | 5725 | 6.902224 | TCAAATGGACTACACATACGAATG | 57.098 | 37.500 | 0.00 | 0.00 | 39.17 | 2.67 |
2567 | 5726 | 7.915293 | TTTCAAATGGACTACACATACGAAT | 57.085 | 32.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2568 | 5727 | 7.822334 | AGATTTCAAATGGACTACACATACGAA | 59.178 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2569 | 5728 | 7.327975 | AGATTTCAAATGGACTACACATACGA | 58.672 | 34.615 | 0.00 | 0.00 | 0.00 | 3.43 |
2570 | 5729 | 7.492669 | AGAGATTTCAAATGGACTACACATACG | 59.507 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
2571 | 5730 | 8.723942 | AGAGATTTCAAATGGACTACACATAC | 57.276 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
2573 | 5732 | 8.762645 | TCTAGAGATTTCAAATGGACTACACAT | 58.237 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
2574 | 5733 | 8.134202 | TCTAGAGATTTCAAATGGACTACACA | 57.866 | 34.615 | 0.00 | 0.00 | 0.00 | 3.72 |
2575 | 5734 | 9.436957 | TTTCTAGAGATTTCAAATGGACTACAC | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2576 | 5735 | 9.658799 | CTTTCTAGAGATTTCAAATGGACTACA | 57.341 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2577 | 5736 | 9.877178 | TCTTTCTAGAGATTTCAAATGGACTAC | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2578 | 5737 | 9.877178 | GTCTTTCTAGAGATTTCAAATGGACTA | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2579 | 5738 | 8.378565 | TGTCTTTCTAGAGATTTCAAATGGACT | 58.621 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2580 | 5739 | 8.553459 | TGTCTTTCTAGAGATTTCAAATGGAC | 57.447 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
2581 | 5740 | 9.573166 | TTTGTCTTTCTAGAGATTTCAAATGGA | 57.427 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
2594 | 5753 | 9.595823 | CCGTTCCTAAATATTTGTCTTTCTAGA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
2595 | 5754 | 9.595823 | TCCGTTCCTAAATATTTGTCTTTCTAG | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
2596 | 5755 | 9.595823 | CTCCGTTCCTAAATATTTGTCTTTCTA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.10 |
2597 | 5756 | 7.553044 | CCTCCGTTCCTAAATATTTGTCTTTCT | 59.447 | 37.037 | 11.05 | 0.00 | 0.00 | 2.52 |
2598 | 5757 | 7.201705 | CCCTCCGTTCCTAAATATTTGTCTTTC | 60.202 | 40.741 | 11.05 | 0.00 | 0.00 | 2.62 |
2599 | 5758 | 6.602009 | CCCTCCGTTCCTAAATATTTGTCTTT | 59.398 | 38.462 | 11.05 | 0.00 | 0.00 | 2.52 |
2600 | 5759 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
2601 | 5760 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
2602 | 5761 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
2603 | 5762 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
2604 | 5763 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
2605 | 5764 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
2606 | 5765 | 6.557633 | ACATACTCCCTCCGTTCCTAAATATT | 59.442 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
2607 | 5766 | 6.082707 | ACATACTCCCTCCGTTCCTAAATAT | 58.917 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2608 | 5767 | 5.461327 | ACATACTCCCTCCGTTCCTAAATA | 58.539 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2609 | 5768 | 4.296056 | ACATACTCCCTCCGTTCCTAAAT | 58.704 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2610 | 5769 | 3.716431 | ACATACTCCCTCCGTTCCTAAA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
2611 | 5770 | 3.393426 | ACATACTCCCTCCGTTCCTAA | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
2612 | 5771 | 3.053095 | AGAACATACTCCCTCCGTTCCTA | 60.053 | 47.826 | 0.00 | 0.00 | 37.31 | 2.94 |
2613 | 5772 | 2.108970 | GAACATACTCCCTCCGTTCCT | 58.891 | 52.381 | 0.00 | 0.00 | 31.82 | 3.36 |
2614 | 5773 | 2.108970 | AGAACATACTCCCTCCGTTCC | 58.891 | 52.381 | 0.00 | 0.00 | 37.31 | 3.62 |
2615 | 5774 | 3.889520 | AAGAACATACTCCCTCCGTTC | 57.110 | 47.619 | 0.00 | 0.00 | 36.95 | 3.95 |
2616 | 5775 | 5.396436 | CCAATAAGAACATACTCCCTCCGTT | 60.396 | 44.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2617 | 5776 | 4.101119 | CCAATAAGAACATACTCCCTCCGT | 59.899 | 45.833 | 0.00 | 0.00 | 0.00 | 4.69 |
2618 | 5777 | 4.632153 | CCAATAAGAACATACTCCCTCCG | 58.368 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
2619 | 5778 | 4.103311 | AGCCAATAAGAACATACTCCCTCC | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2620 | 5779 | 5.059833 | CAGCCAATAAGAACATACTCCCTC | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2621 | 5780 | 4.721776 | TCAGCCAATAAGAACATACTCCCT | 59.278 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
2622 | 5781 | 5.036117 | TCAGCCAATAAGAACATACTCCC | 57.964 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2623 | 5782 | 6.458888 | GCTTTCAGCCAATAAGAACATACTCC | 60.459 | 42.308 | 0.00 | 0.00 | 34.48 | 3.85 |
2624 | 5783 | 6.490534 | GCTTTCAGCCAATAAGAACATACTC | 58.509 | 40.000 | 0.00 | 0.00 | 34.48 | 2.59 |
2625 | 5784 | 6.442513 | GCTTTCAGCCAATAAGAACATACT | 57.557 | 37.500 | 0.00 | 0.00 | 34.48 | 2.12 |
2668 | 5827 | 1.035139 | CAGGGCAACAAGACTTGCTT | 58.965 | 50.000 | 15.24 | 6.21 | 45.07 | 3.91 |
2707 | 5866 | 6.289834 | ACAAAATGCTTGGTTTGATCAATGA | 58.710 | 32.000 | 9.40 | 0.00 | 37.98 | 2.57 |
2800 | 5960 | 9.139174 | CTGGTTACCAAATATTTGACAATGAAC | 57.861 | 33.333 | 26.32 | 18.15 | 40.55 | 3.18 |
2909 | 9887 | 3.011818 | CCATCAATAGAACTGCTGCACA | 58.988 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
2941 | 9919 | 3.028921 | GCCCTCCTGGAGCACTCAG | 62.029 | 68.421 | 18.51 | 3.38 | 35.39 | 3.35 |
2945 | 9923 | 1.341156 | ACTATGCCCTCCTGGAGCAC | 61.341 | 60.000 | 18.51 | 12.14 | 40.50 | 4.40 |
2963 | 9941 | 1.418637 | TGGTGTTTCTAGTCCACCCAC | 59.581 | 52.381 | 18.81 | 7.20 | 46.49 | 4.61 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.