Multiple sequence alignment - TraesCS1B01G115700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G115700 chr1B 100.000 3476 0 0 1 3476 136062649 136066124 0.000000e+00 6420.0
1 TraesCS1B01G115700 chr1B 88.715 1914 169 33 158 2047 136166928 136168818 0.000000e+00 2294.0
2 TraesCS1B01G115700 chr1B 91.176 1428 82 20 190 1589 134722762 134724173 0.000000e+00 1899.0
3 TraesCS1B01G115700 chr1B 92.097 1278 61 14 1598 2859 134731147 134732400 0.000000e+00 1764.0
4 TraesCS1B01G115700 chr1B 92.321 560 41 1 2031 2590 136168832 136169389 0.000000e+00 795.0
5 TraesCS1B01G115700 chr1B 82.692 364 53 4 3059 3414 134885800 134886161 7.240000e-82 315.0
6 TraesCS1B01G115700 chr1B 100.000 28 0 0 65 92 533046974 533046947 6.000000e-03 52.8
7 TraesCS1B01G115700 chr1D 91.631 2593 137 33 158 2712 81366151 81368701 0.000000e+00 3513.0
8 TraesCS1B01G115700 chr1D 88.813 2485 206 45 124 2584 81480977 81483413 0.000000e+00 2983.0
9 TraesCS1B01G115700 chr1D 87.202 336 37 5 3083 3414 81376488 81376821 9.110000e-101 377.0
10 TraesCS1B01G115700 chr1D 89.316 234 20 3 2744 2977 81368881 81369109 4.390000e-74 289.0
11 TraesCS1B01G115700 chr1D 82.969 229 35 2 3189 3413 427924029 427923801 1.640000e-48 204.0
12 TraesCS1B01G115700 chr1D 82.403 233 37 2 3185 3413 427926381 427926149 2.120000e-47 200.0
13 TraesCS1B01G115700 chr1D 96.429 56 2 0 2919 2974 346844133 346844078 3.690000e-15 93.5
14 TraesCS1B01G115700 chr1D 94.828 58 3 0 2911 2968 200344996 200344939 1.330000e-14 91.6
15 TraesCS1B01G115700 chr1A 88.195 1889 164 26 168 2047 100038298 100040136 0.000000e+00 2198.0
16 TraesCS1B01G115700 chr1A 95.513 1248 50 4 603 1847 100001832 100003076 0.000000e+00 1989.0
17 TraesCS1B01G115700 chr1A 92.380 748 37 6 1857 2603 100003140 100003868 0.000000e+00 1048.0
18 TraesCS1B01G115700 chr1A 92.599 554 39 1 2031 2584 100040148 100040699 0.000000e+00 795.0
19 TraesCS1B01G115700 chr1A 92.893 394 24 3 3022 3414 100010186 100010576 1.400000e-158 569.0
20 TraesCS1B01G115700 chr1A 92.920 339 14 4 2646 2977 100003863 100004198 5.220000e-133 484.0
21 TraesCS1B01G115700 chr1A 85.981 321 27 9 2598 2911 96431058 96431367 9.300000e-86 327.0
22 TraesCS1B01G115700 chr1A 86.010 193 19 1 308 500 100001255 100001439 2.120000e-47 200.0
23 TraesCS1B01G115700 chr1A 95.161 62 3 0 3415 3476 356700400 356700339 7.940000e-17 99.0
24 TraesCS1B01G115700 chr1A 80.460 87 11 4 3059 3141 387860743 387860827 1.040000e-05 62.1
25 TraesCS1B01G115700 chr5A 86.850 327 24 7 2598 2917 640071604 640071290 7.140000e-92 348.0
26 TraesCS1B01G115700 chr5A 100.000 28 0 0 3085 3112 441676438 441676411 6.000000e-03 52.8
27 TraesCS1B01G115700 chr7D 86.544 327 25 9 2598 2917 574011717 574012031 3.320000e-90 342.0
28 TraesCS1B01G115700 chr7D 82.479 234 37 2 3184 3413 524538828 524539061 5.880000e-48 202.0
29 TraesCS1B01G115700 chr7D 93.548 62 3 1 3415 3476 185917856 185917796 1.330000e-14 91.6
30 TraesCS1B01G115700 chr3D 86.544 327 25 10 2598 2917 94534545 94534231 3.320000e-90 342.0
31 TraesCS1B01G115700 chr3D 82.969 229 35 2 3189 3413 28588348 28588576 1.640000e-48 204.0
32 TraesCS1B01G115700 chr3D 79.298 285 41 9 2598 2875 122444298 122444571 2.130000e-42 183.0
33 TraesCS1B01G115700 chr3D 92.222 90 6 1 2972 3061 509255200 509255112 3.640000e-25 126.0
34 TraesCS1B01G115700 chr6D 85.670 321 28 9 2598 2911 450574538 450574229 4.330000e-84 322.0
35 TraesCS1B01G115700 chr6D 84.098 327 33 9 2598 2917 418052497 418052183 7.290000e-77 298.0
36 TraesCS1B01G115700 chr6D 82.403 233 37 2 3185 3413 199698190 199698422 2.120000e-47 200.0
37 TraesCS1B01G115700 chr7A 84.735 321 30 10 2598 2911 734654377 734654069 1.570000e-78 303.0
38 TraesCS1B01G115700 chr6B 82.833 233 36 2 3185 3413 519329541 519329773 4.550000e-49 206.0
39 TraesCS1B01G115700 chr6B 94.118 85 5 0 2976 3060 468624576 468624660 2.820000e-26 130.0
40 TraesCS1B01G115700 chr6B 94.118 85 5 0 2976 3060 468652669 468652753 2.820000e-26 130.0
41 TraesCS1B01G115700 chr6B 89.583 96 10 0 2960 3055 551343714 551343619 4.710000e-24 122.0
42 TraesCS1B01G115700 chr6B 86.207 116 11 5 2961 3072 607208234 607208120 1.690000e-23 121.0
43 TraesCS1B01G115700 chr2D 80.000 285 39 9 2598 2875 192318864 192318591 9.840000e-46 195.0
44 TraesCS1B01G115700 chr2D 93.750 64 3 1 2906 2968 492718108 492718045 1.030000e-15 95.3
45 TraesCS1B01G115700 chr6A 90.291 103 7 3 2965 3067 89972588 89972687 7.830000e-27 132.0
46 TraesCS1B01G115700 chr3B 93.182 88 6 0 2975 3062 11960602 11960689 2.820000e-26 130.0
47 TraesCS1B01G115700 chr3B 74.242 264 44 17 3083 3342 13245361 13245118 4.780000e-14 89.8
48 TraesCS1B01G115700 chr3B 87.013 77 7 3 3401 3476 501611865 501611791 2.220000e-12 84.2
49 TraesCS1B01G115700 chr3B 80.556 108 12 7 3059 3160 12546892 12546996 1.340000e-09 75.0
50 TraesCS1B01G115700 chr7B 91.304 92 8 0 2972 3063 462238657 462238748 3.640000e-25 126.0
51 TraesCS1B01G115700 chr7B 93.846 65 3 1 2911 2974 532449889 532449825 2.860000e-16 97.1
52 TraesCS1B01G115700 chr7B 91.935 62 5 0 3415 3476 663974857 663974918 1.720000e-13 87.9
53 TraesCS1B01G115700 chrUn 92.857 84 6 0 2972 3055 41259983 41260066 4.710000e-24 122.0
54 TraesCS1B01G115700 chr3A 98.485 66 1 0 2912 2977 724913711 724913646 2.190000e-22 117.0
55 TraesCS1B01G115700 chr2A 96.721 61 1 1 2915 2974 659099347 659099407 2.210000e-17 100.0
56 TraesCS1B01G115700 chr2A 93.548 62 4 0 2913 2974 293967999 293968060 3.690000e-15 93.5
57 TraesCS1B01G115700 chr2A 93.220 59 4 0 3418 3476 456687615 456687557 1.720000e-13 87.9
58 TraesCS1B01G115700 chr4A 92.308 65 3 2 3412 3476 35658151 35658213 1.330000e-14 91.6
59 TraesCS1B01G115700 chr4A 91.045 67 5 1 3410 3476 212677858 212677793 4.780000e-14 89.8
60 TraesCS1B01G115700 chr4D 90.909 66 5 1 3411 3476 293937922 293937986 1.720000e-13 87.9
61 TraesCS1B01G115700 chr4D 92.063 63 3 2 3414 3476 471209081 471209021 1.720000e-13 87.9
62 TraesCS1B01G115700 chr5B 100.000 28 0 0 3085 3112 399781086 399781059 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G115700 chr1B 136062649 136066124 3475 False 6420.00 6420 100.00000 1 3476 1 chr1B.!!$F4 3475
1 TraesCS1B01G115700 chr1B 134722762 134724173 1411 False 1899.00 1899 91.17600 190 1589 1 chr1B.!!$F1 1399
2 TraesCS1B01G115700 chr1B 134731147 134732400 1253 False 1764.00 1764 92.09700 1598 2859 1 chr1B.!!$F2 1261
3 TraesCS1B01G115700 chr1B 136166928 136169389 2461 False 1544.50 2294 90.51800 158 2590 2 chr1B.!!$F5 2432
4 TraesCS1B01G115700 chr1D 81480977 81483413 2436 False 2983.00 2983 88.81300 124 2584 1 chr1D.!!$F2 2460
5 TraesCS1B01G115700 chr1D 81366151 81369109 2958 False 1901.00 3513 90.47350 158 2977 2 chr1D.!!$F3 2819
6 TraesCS1B01G115700 chr1D 427923801 427926381 2580 True 202.00 204 82.68600 3185 3413 2 chr1D.!!$R3 228
7 TraesCS1B01G115700 chr1A 100038298 100040699 2401 False 1496.50 2198 90.39700 168 2584 2 chr1A.!!$F5 2416
8 TraesCS1B01G115700 chr1A 100001255 100004198 2943 False 930.25 1989 91.70575 308 2977 4 chr1A.!!$F4 2669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 506 0.387239 GCACTTCACGGCACCATTTC 60.387 55.0 0.0 0.0 0.00 2.17 F
507 513 0.388391 ACGGCACCATTTCATTTGCG 60.388 50.0 0.0 0.0 35.74 4.85 F
1065 1372 0.679505 TTGTGCTCTGCCTCGTAACT 59.320 50.0 0.0 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 2787 0.234106 CGTCGTCACTGTACGTCTGT 59.766 55.000 0.0 0.0 43.31 3.41 R
2395 2842 1.270518 CGGTATGCTCCCCATCTTCAG 60.271 57.143 0.0 0.0 35.34 3.02 R
2741 3355 1.032114 GTGGCTTGTGGGTAGATGGC 61.032 60.000 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 2.906354 ACTTTGGAGACGTATCATGCC 58.094 47.619 12.92 0.00 0.00 4.40
96 97 1.860950 CTTTGGAGACGTATCATGCCG 59.139 52.381 12.92 0.00 0.00 5.69
97 98 0.529773 TTGGAGACGTATCATGCCGC 60.530 55.000 12.92 0.00 0.00 6.53
98 99 1.664965 GGAGACGTATCATGCCGCC 60.665 63.158 12.92 0.00 0.00 6.13
99 100 2.016704 GAGACGTATCATGCCGCCG 61.017 63.158 5.07 0.00 0.00 6.46
100 101 3.702555 GACGTATCATGCCGCCGC 61.703 66.667 0.00 0.00 0.00 6.53
103 104 2.669569 GTATCATGCCGCCGCCAT 60.670 61.111 0.00 0.00 0.00 4.40
104 105 2.669229 TATCATGCCGCCGCCATG 60.669 61.111 0.94 0.94 0.00 3.66
116 117 4.496336 GCCATGGCCGAGCTCCTT 62.496 66.667 27.24 0.00 34.56 3.36
117 118 2.515523 CCATGGCCGAGCTCCTTG 60.516 66.667 8.47 3.54 0.00 3.61
118 119 3.207669 CATGGCCGAGCTCCTTGC 61.208 66.667 8.47 8.54 43.29 4.01
119 120 4.496336 ATGGCCGAGCTCCTTGCC 62.496 66.667 23.10 23.10 44.23 4.52
121 122 4.722700 GGCCGAGCTCCTTGCCAA 62.723 66.667 24.29 0.00 43.46 4.52
122 123 2.439156 GCCGAGCTCCTTGCCAAT 60.439 61.111 8.47 0.00 44.23 3.16
123 124 2.476320 GCCGAGCTCCTTGCCAATC 61.476 63.158 8.47 0.00 44.23 2.67
124 125 1.078214 CCGAGCTCCTTGCCAATCA 60.078 57.895 8.47 0.00 44.23 2.57
125 126 0.677731 CCGAGCTCCTTGCCAATCAA 60.678 55.000 8.47 0.00 44.23 2.57
126 127 1.167851 CGAGCTCCTTGCCAATCAAA 58.832 50.000 8.47 0.00 44.23 2.69
127 128 1.541147 CGAGCTCCTTGCCAATCAAAA 59.459 47.619 8.47 0.00 44.23 2.44
128 129 2.030007 CGAGCTCCTTGCCAATCAAAAA 60.030 45.455 8.47 0.00 44.23 1.94
129 130 3.367703 CGAGCTCCTTGCCAATCAAAAAT 60.368 43.478 8.47 0.00 44.23 1.82
130 131 4.572909 GAGCTCCTTGCCAATCAAAAATT 58.427 39.130 0.87 0.00 44.23 1.82
131 132 5.622007 CGAGCTCCTTGCCAATCAAAAATTA 60.622 40.000 8.47 0.00 44.23 1.40
132 133 6.303903 AGCTCCTTGCCAATCAAAAATTAT 57.696 33.333 0.00 0.00 44.23 1.28
133 134 7.422465 AGCTCCTTGCCAATCAAAAATTATA 57.578 32.000 0.00 0.00 44.23 0.98
134 135 7.850193 AGCTCCTTGCCAATCAAAAATTATAA 58.150 30.769 0.00 0.00 44.23 0.98
135 136 8.320617 AGCTCCTTGCCAATCAAAAATTATAAA 58.679 29.630 0.00 0.00 44.23 1.40
136 137 9.112725 GCTCCTTGCCAATCAAAAATTATAAAT 57.887 29.630 0.00 0.00 33.65 1.40
142 143 9.862371 TGCCAATCAAAAATTATAAATACGTGT 57.138 25.926 0.00 0.00 0.00 4.49
210 214 7.680730 AGTCTCACAAGGTCATTACTAAACAT 58.319 34.615 0.00 0.00 0.00 2.71
228 232 9.561069 ACTAAACATCAAACTGAGACACTAAAT 57.439 29.630 0.00 0.00 0.00 1.40
329 335 8.836413 CATGTTCTCCAAAACTAACTTCTTACA 58.164 33.333 0.00 0.00 0.00 2.41
397 403 4.498345 GCTAGTCTATATGGATAGCACCGC 60.498 50.000 17.55 0.00 38.92 5.68
467 473 5.702670 ACATTCACTGAACTGTGTAATCCAG 59.297 40.000 10.57 0.00 38.90 3.86
500 506 0.387239 GCACTTCACGGCACCATTTC 60.387 55.000 0.00 0.00 0.00 2.17
501 507 0.950836 CACTTCACGGCACCATTTCA 59.049 50.000 0.00 0.00 0.00 2.69
502 508 1.541147 CACTTCACGGCACCATTTCAT 59.459 47.619 0.00 0.00 0.00 2.57
503 509 2.030007 CACTTCACGGCACCATTTCATT 60.030 45.455 0.00 0.00 0.00 2.57
504 510 2.627699 ACTTCACGGCACCATTTCATTT 59.372 40.909 0.00 0.00 0.00 2.32
507 513 0.388391 ACGGCACCATTTCATTTGCG 60.388 50.000 0.00 0.00 35.74 4.85
518 524 5.449588 CCATTTCATTTGCGACTCAGCTATT 60.450 40.000 0.00 0.00 38.13 1.73
519 525 5.627499 TTTCATTTGCGACTCAGCTATTT 57.373 34.783 0.00 0.00 38.13 1.40
523 529 5.641636 TCATTTGCGACTCAGCTATTTGTTA 59.358 36.000 0.00 0.00 38.13 2.41
532 538 7.215719 ACTCAGCTATTTGTTAAAAACCTCC 57.784 36.000 0.00 0.00 0.00 4.30
541 547 4.329392 TGTTAAAAACCTCCTCGGAATCC 58.671 43.478 0.00 0.00 36.31 3.01
599 634 6.157994 AGTGATTTTATTACCACCAGGCTCTA 59.842 38.462 0.00 0.00 39.06 2.43
623 925 0.969149 ATCGAGCGGGATAATGCAGA 59.031 50.000 0.00 0.00 0.00 4.26
863 1168 2.187946 GCAGCCGCACCACTATCT 59.812 61.111 0.00 0.00 38.36 1.98
873 1178 2.415625 GCACCACTATCTCGACGACTTT 60.416 50.000 0.00 0.00 0.00 2.66
1023 1330 1.047002 AGAACTCTCACTGCAGCAGT 58.953 50.000 23.11 23.11 46.51 4.40
1065 1372 0.679505 TTGTGCTCTGCCTCGTAACT 59.320 50.000 0.00 0.00 0.00 2.24
1074 1381 1.935327 GCCTCGTAACTGGAGACGCT 61.935 60.000 0.00 0.00 38.93 5.07
1106 1413 6.095377 ACAAGTTAAGCAGCAATTTCTATGC 58.905 36.000 0.00 0.00 44.15 3.14
1151 1458 1.873270 ATCGTCCAGCAGCACGTGTA 61.873 55.000 18.38 0.00 37.30 2.90
1517 1830 4.629200 GGAGTACTCTTTGTGAGCATCTTG 59.371 45.833 21.88 0.00 46.41 3.02
1666 1981 0.809241 GCGAATCAGTCAGGAGCTGG 60.809 60.000 0.00 0.00 34.89 4.85
1697 2012 1.094785 CCTCGCCATTTGAACCGATT 58.905 50.000 0.00 0.00 0.00 3.34
1783 2100 5.120208 CAGGTAACAGTTTCCACAGTAATCG 59.880 44.000 11.29 0.00 41.41 3.34
1824 2172 5.302360 ACGGAAGTGCACAACTAGAATTAA 58.698 37.500 21.04 0.00 46.97 1.40
1825 2173 5.938125 ACGGAAGTGCACAACTAGAATTAAT 59.062 36.000 21.04 0.00 46.97 1.40
1839 2215 8.256356 ACTAGAATTAATCCTGTGCTACATCT 57.744 34.615 0.00 0.00 0.00 2.90
1877 2282 4.292977 GACAGTATGGCCATGCTTTAAC 57.707 45.455 31.28 18.62 39.24 2.01
1879 2284 3.696051 ACAGTATGGCCATGCTTTAACAG 59.304 43.478 31.28 21.22 43.62 3.16
1983 2392 5.104193 ACAGCTGACCTCATCTTATGGAATT 60.104 40.000 23.35 0.00 0.00 2.17
2041 2488 4.154195 ACACATGACCTAAATTCTGAACGC 59.846 41.667 0.00 0.00 0.00 4.84
2123 2570 2.636412 CGTCCACCAAGAGCTCGGA 61.636 63.158 13.94 8.75 0.00 4.55
2229 2676 4.295119 AGCTCCGCGGACGTGTTT 62.295 61.111 27.28 4.98 37.70 2.83
2371 2818 4.719369 ACGACGGCGAGCAGTTCC 62.719 66.667 22.49 0.00 41.64 3.62
2741 3355 5.127845 TCTTCTTCCTACTTGTGGCATCTAG 59.872 44.000 0.00 0.00 0.00 2.43
2753 3367 2.464157 GCATCTAGCCATCTACCCAC 57.536 55.000 0.00 0.00 37.23 4.61
2755 3369 2.104792 GCATCTAGCCATCTACCCACAA 59.895 50.000 0.00 0.00 37.23 3.33
2756 3370 3.805108 GCATCTAGCCATCTACCCACAAG 60.805 52.174 0.00 0.00 37.23 3.16
2762 3376 1.271871 CCATCTACCCACAAGCCACAA 60.272 52.381 0.00 0.00 0.00 3.33
2891 3505 5.184711 TGATTTTTAATTTGAGGCCATGGC 58.815 37.500 29.47 29.47 41.06 4.40
2913 3527 3.306502 CGGTAGTTTTGCAAGTCCCTCTA 60.307 47.826 0.00 0.00 0.00 2.43
2926 3540 6.881602 GCAAGTCCCTCTATTGGAATATTAGG 59.118 42.308 0.00 0.00 32.59 2.69
2980 3594 8.603242 TTCATCACTAGAACAAAAAGTACTCC 57.397 34.615 0.00 0.00 0.00 3.85
2981 3595 7.159372 TCATCACTAGAACAAAAAGTACTCCC 58.841 38.462 0.00 0.00 0.00 4.30
2982 3596 6.742559 TCACTAGAACAAAAAGTACTCCCT 57.257 37.500 0.00 0.00 0.00 4.20
2983 3597 6.522054 TCACTAGAACAAAAAGTACTCCCTG 58.478 40.000 0.00 0.00 0.00 4.45
2984 3598 5.179555 CACTAGAACAAAAAGTACTCCCTGC 59.820 44.000 0.00 0.00 0.00 4.85
2985 3599 3.139077 AGAACAAAAAGTACTCCCTGCG 58.861 45.455 0.00 0.00 0.00 5.18
2986 3600 2.632987 ACAAAAAGTACTCCCTGCGT 57.367 45.000 0.00 0.00 0.00 5.24
2987 3601 2.490991 ACAAAAAGTACTCCCTGCGTC 58.509 47.619 0.00 0.00 0.00 5.19
2988 3602 2.104281 ACAAAAAGTACTCCCTGCGTCT 59.896 45.455 0.00 0.00 0.00 4.18
2989 3603 2.737252 CAAAAAGTACTCCCTGCGTCTC 59.263 50.000 0.00 0.00 0.00 3.36
2990 3604 1.629043 AAAGTACTCCCTGCGTCTCA 58.371 50.000 0.00 0.00 0.00 3.27
2991 3605 1.853963 AAGTACTCCCTGCGTCTCAT 58.146 50.000 0.00 0.00 0.00 2.90
2992 3606 2.730934 AGTACTCCCTGCGTCTCATA 57.269 50.000 0.00 0.00 0.00 2.15
2993 3607 3.014304 AGTACTCCCTGCGTCTCATAA 57.986 47.619 0.00 0.00 0.00 1.90
2994 3608 3.567397 AGTACTCCCTGCGTCTCATAAT 58.433 45.455 0.00 0.00 0.00 1.28
2995 3609 2.898729 ACTCCCTGCGTCTCATAATG 57.101 50.000 0.00 0.00 0.00 1.90
2996 3610 2.111384 ACTCCCTGCGTCTCATAATGT 58.889 47.619 0.00 0.00 0.00 2.71
2997 3611 3.296854 ACTCCCTGCGTCTCATAATGTA 58.703 45.455 0.00 0.00 0.00 2.29
2998 3612 3.704566 ACTCCCTGCGTCTCATAATGTAA 59.295 43.478 0.00 0.00 0.00 2.41
2999 3613 4.202161 ACTCCCTGCGTCTCATAATGTAAG 60.202 45.833 0.00 0.00 0.00 2.34
3000 3614 3.958147 TCCCTGCGTCTCATAATGTAAGA 59.042 43.478 0.00 0.00 0.00 2.10
3001 3615 4.051922 CCCTGCGTCTCATAATGTAAGAC 58.948 47.826 0.00 0.00 36.82 3.01
3033 3647 2.729882 ACTAGCGTAGTGTCAAAAAGCG 59.270 45.455 0.00 0.00 37.69 4.68
3034 3648 1.578583 AGCGTAGTGTCAAAAAGCGT 58.421 45.000 0.00 0.00 0.00 5.07
3035 3649 1.525619 AGCGTAGTGTCAAAAAGCGTC 59.474 47.619 0.00 0.00 0.00 5.19
3036 3650 1.525619 GCGTAGTGTCAAAAAGCGTCT 59.474 47.619 0.00 0.00 0.00 4.18
3037 3651 2.033151 GCGTAGTGTCAAAAAGCGTCTT 60.033 45.455 0.00 0.00 0.00 3.01
3038 3652 3.182972 GCGTAGTGTCAAAAAGCGTCTTA 59.817 43.478 0.00 0.00 0.00 2.10
3039 3653 4.685020 CGTAGTGTCAAAAAGCGTCTTAC 58.315 43.478 0.00 0.00 0.00 2.34
3040 3654 4.207635 CGTAGTGTCAAAAAGCGTCTTACA 59.792 41.667 0.00 0.00 0.00 2.41
3041 3655 5.107607 CGTAGTGTCAAAAAGCGTCTTACAT 60.108 40.000 0.00 0.00 0.00 2.29
3042 3656 5.751243 AGTGTCAAAAAGCGTCTTACATT 57.249 34.783 0.00 0.00 0.00 2.71
3043 3657 6.854496 AGTGTCAAAAAGCGTCTTACATTA 57.146 33.333 0.00 0.00 0.00 1.90
3044 3658 7.435068 AGTGTCAAAAAGCGTCTTACATTAT 57.565 32.000 0.00 0.00 0.00 1.28
3045 3659 7.298122 AGTGTCAAAAAGCGTCTTACATTATG 58.702 34.615 0.00 0.00 0.00 1.90
3046 3660 6.523201 GTGTCAAAAAGCGTCTTACATTATGG 59.477 38.462 0.00 0.00 0.00 2.74
3047 3661 6.027749 GTCAAAAAGCGTCTTACATTATGGG 58.972 40.000 0.00 0.00 0.00 4.00
3048 3662 5.941058 TCAAAAAGCGTCTTACATTATGGGA 59.059 36.000 0.00 0.00 0.00 4.37
3049 3663 6.601613 TCAAAAAGCGTCTTACATTATGGGAT 59.398 34.615 0.00 0.00 0.00 3.85
3050 3664 6.377327 AAAAGCGTCTTACATTATGGGATG 57.623 37.500 0.00 0.00 0.00 3.51
3051 3665 4.008074 AGCGTCTTACATTATGGGATGG 57.992 45.455 0.00 0.00 0.00 3.51
3052 3666 3.646162 AGCGTCTTACATTATGGGATGGA 59.354 43.478 0.00 0.00 0.00 3.41
3053 3667 3.997021 GCGTCTTACATTATGGGATGGAG 59.003 47.826 0.00 0.00 0.00 3.86
3054 3668 4.569943 CGTCTTACATTATGGGATGGAGG 58.430 47.826 0.00 0.00 0.00 4.30
3055 3669 4.283467 CGTCTTACATTATGGGATGGAGGA 59.717 45.833 0.00 0.00 0.00 3.71
3056 3670 5.221641 CGTCTTACATTATGGGATGGAGGAA 60.222 44.000 0.00 0.00 28.96 3.36
3057 3671 6.601332 GTCTTACATTATGGGATGGAGGAAA 58.399 40.000 0.00 0.00 28.96 3.13
3058 3672 7.234355 GTCTTACATTATGGGATGGAGGAAAT 58.766 38.462 0.00 0.00 28.96 2.17
3059 3673 8.383175 GTCTTACATTATGGGATGGAGGAAATA 58.617 37.037 0.00 0.00 28.96 1.40
3060 3674 8.605947 TCTTACATTATGGGATGGAGGAAATAG 58.394 37.037 0.00 0.00 0.00 1.73
3061 3675 5.574188 ACATTATGGGATGGAGGAAATAGC 58.426 41.667 0.00 0.00 0.00 2.97
3062 3676 5.074929 ACATTATGGGATGGAGGAAATAGCA 59.925 40.000 0.00 0.00 0.00 3.49
3063 3677 5.865977 TTATGGGATGGAGGAAATAGCAT 57.134 39.130 0.00 0.00 0.00 3.79
3064 3678 6.968400 TTATGGGATGGAGGAAATAGCATA 57.032 37.500 0.00 0.00 0.00 3.14
3065 3679 4.640771 TGGGATGGAGGAAATAGCATAC 57.359 45.455 0.00 0.00 0.00 2.39
3066 3680 4.242811 TGGGATGGAGGAAATAGCATACT 58.757 43.478 0.00 0.00 0.00 2.12
3067 3681 5.411493 TGGGATGGAGGAAATAGCATACTA 58.589 41.667 0.00 0.00 0.00 1.82
3068 3682 5.485353 TGGGATGGAGGAAATAGCATACTAG 59.515 44.000 0.00 0.00 0.00 2.57
3069 3683 5.721960 GGGATGGAGGAAATAGCATACTAGA 59.278 44.000 0.00 0.00 0.00 2.43
3070 3684 6.213600 GGGATGGAGGAAATAGCATACTAGAA 59.786 42.308 0.00 0.00 0.00 2.10
3071 3685 7.256691 GGGATGGAGGAAATAGCATACTAGAAA 60.257 40.741 0.00 0.00 0.00 2.52
3072 3686 8.157476 GGATGGAGGAAATAGCATACTAGAAAA 58.843 37.037 0.00 0.00 0.00 2.29
3073 3687 9.561069 GATGGAGGAAATAGCATACTAGAAAAA 57.439 33.333 0.00 0.00 0.00 1.94
3085 3699 9.515226 AGCATACTAGAAAAATAGGAAAACACA 57.485 29.630 0.00 0.00 0.00 3.72
3090 3704 9.797556 ACTAGAAAAATAGGAAAACACAACAAC 57.202 29.630 0.00 0.00 0.00 3.32
3091 3705 9.796120 CTAGAAAAATAGGAAAACACAACAACA 57.204 29.630 0.00 0.00 0.00 3.33
3093 3707 9.665719 AGAAAAATAGGAAAACACAACAACATT 57.334 25.926 0.00 0.00 0.00 2.71
3094 3708 9.701355 GAAAAATAGGAAAACACAACAACATTG 57.299 29.630 0.00 0.00 0.00 2.82
3095 3709 6.843069 AATAGGAAAACACAACAACATTGC 57.157 33.333 0.00 0.00 0.00 3.56
3096 3710 4.199432 AGGAAAACACAACAACATTGCA 57.801 36.364 0.00 0.00 0.00 4.08
3097 3711 3.932089 AGGAAAACACAACAACATTGCAC 59.068 39.130 0.00 0.00 0.00 4.57
3098 3712 3.681897 GGAAAACACAACAACATTGCACA 59.318 39.130 0.00 0.00 0.00 4.57
3099 3713 4.332268 GGAAAACACAACAACATTGCACAT 59.668 37.500 0.00 0.00 0.00 3.21
3100 3714 4.861389 AAACACAACAACATTGCACATG 57.139 36.364 7.16 7.16 0.00 3.21
3101 3715 3.523606 ACACAACAACATTGCACATGT 57.476 38.095 8.21 8.21 0.00 3.21
3102 3716 4.645762 ACACAACAACATTGCACATGTA 57.354 36.364 12.78 0.00 0.00 2.29
3103 3717 5.003692 ACACAACAACATTGCACATGTAA 57.996 34.783 12.78 0.00 0.00 2.41
3104 3718 4.803088 ACACAACAACATTGCACATGTAAC 59.197 37.500 12.78 0.00 0.00 2.50
3105 3719 4.802563 CACAACAACATTGCACATGTAACA 59.197 37.500 12.78 0.00 0.00 2.41
3106 3720 5.290400 CACAACAACATTGCACATGTAACAA 59.710 36.000 13.96 13.96 0.00 2.83
3107 3721 5.290643 ACAACAACATTGCACATGTAACAAC 59.709 36.000 13.90 0.00 0.00 3.32
3108 3722 5.003692 ACAACATTGCACATGTAACAACA 57.996 34.783 13.90 0.00 0.00 3.33
3109 3723 5.414360 ACAACATTGCACATGTAACAACAA 58.586 33.333 13.90 7.50 0.00 2.83
3110 3724 5.290643 ACAACATTGCACATGTAACAACAAC 59.709 36.000 13.90 0.00 0.00 3.32
3111 3725 4.367450 ACATTGCACATGTAACAACAACC 58.633 39.130 13.90 0.00 0.00 3.77
3112 3726 2.765108 TGCACATGTAACAACAACCG 57.235 45.000 0.00 0.00 0.00 4.44
3113 3727 1.268794 TGCACATGTAACAACAACCGC 60.269 47.619 0.00 0.00 0.00 5.68
3114 3728 1.669184 CACATGTAACAACAACCGCG 58.331 50.000 0.00 0.00 0.00 6.46
3115 3729 1.003331 CACATGTAACAACAACCGCGT 60.003 47.619 4.92 0.00 0.00 6.01
3116 3730 2.221286 CACATGTAACAACAACCGCGTA 59.779 45.455 4.92 0.00 0.00 4.42
3117 3731 2.871022 ACATGTAACAACAACCGCGTAA 59.129 40.909 4.92 0.00 0.00 3.18
3118 3732 3.311871 ACATGTAACAACAACCGCGTAAA 59.688 39.130 4.92 0.00 0.00 2.01
3119 3733 4.023878 ACATGTAACAACAACCGCGTAAAT 60.024 37.500 4.92 0.00 0.00 1.40
3120 3734 3.874706 TGTAACAACAACCGCGTAAATG 58.125 40.909 4.92 0.35 0.00 2.32
3121 3735 3.558829 TGTAACAACAACCGCGTAAATGA 59.441 39.130 4.92 0.00 0.00 2.57
3122 3736 2.961522 ACAACAACCGCGTAAATGAG 57.038 45.000 4.92 0.00 0.00 2.90
3123 3737 2.485903 ACAACAACCGCGTAAATGAGA 58.514 42.857 4.92 0.00 0.00 3.27
3124 3738 2.222445 ACAACAACCGCGTAAATGAGAC 59.778 45.455 4.92 0.00 0.00 3.36
3125 3739 2.157834 ACAACCGCGTAAATGAGACA 57.842 45.000 4.92 0.00 0.00 3.41
3126 3740 2.485903 ACAACCGCGTAAATGAGACAA 58.514 42.857 4.92 0.00 0.00 3.18
3127 3741 2.478894 ACAACCGCGTAAATGAGACAAG 59.521 45.455 4.92 0.00 0.00 3.16
3128 3742 2.734606 CAACCGCGTAAATGAGACAAGA 59.265 45.455 4.92 0.00 0.00 3.02
3129 3743 3.034721 ACCGCGTAAATGAGACAAGAA 57.965 42.857 4.92 0.00 0.00 2.52
3130 3744 2.735134 ACCGCGTAAATGAGACAAGAAC 59.265 45.455 4.92 0.00 0.00 3.01
3131 3745 2.734606 CCGCGTAAATGAGACAAGAACA 59.265 45.455 4.92 0.00 0.00 3.18
3132 3746 3.370978 CCGCGTAAATGAGACAAGAACAT 59.629 43.478 4.92 0.00 0.00 2.71
3133 3747 4.565166 CCGCGTAAATGAGACAAGAACATA 59.435 41.667 4.92 0.00 0.00 2.29
3134 3748 5.234329 CCGCGTAAATGAGACAAGAACATAT 59.766 40.000 4.92 0.00 0.00 1.78
3135 3749 6.347881 CGCGTAAATGAGACAAGAACATATC 58.652 40.000 0.00 0.00 0.00 1.63
3136 3750 6.019881 CGCGTAAATGAGACAAGAACATATCA 60.020 38.462 0.00 0.00 0.00 2.15
3137 3751 7.306807 CGCGTAAATGAGACAAGAACATATCAT 60.307 37.037 0.00 0.00 0.00 2.45
3138 3752 7.795734 GCGTAAATGAGACAAGAACATATCATG 59.204 37.037 0.00 0.00 33.00 3.07
3139 3753 9.034544 CGTAAATGAGACAAGAACATATCATGA 57.965 33.333 0.00 0.00 31.27 3.07
3141 3755 7.474398 AATGAGACAAGAACATATCATGACG 57.526 36.000 0.00 0.00 31.27 4.35
3142 3756 5.351458 TGAGACAAGAACATATCATGACGG 58.649 41.667 0.00 0.00 31.27 4.79
3143 3757 5.127031 TGAGACAAGAACATATCATGACGGA 59.873 40.000 0.00 0.00 31.27 4.69
3144 3758 5.595885 AGACAAGAACATATCATGACGGAG 58.404 41.667 0.00 0.00 31.27 4.63
3145 3759 4.697514 ACAAGAACATATCATGACGGAGG 58.302 43.478 0.00 0.00 31.27 4.30
3146 3760 4.162320 ACAAGAACATATCATGACGGAGGT 59.838 41.667 0.00 0.00 31.27 3.85
3147 3761 5.362717 ACAAGAACATATCATGACGGAGGTA 59.637 40.000 0.00 0.00 31.27 3.08
3148 3762 6.042093 ACAAGAACATATCATGACGGAGGTAT 59.958 38.462 0.00 0.00 31.27 2.73
3149 3763 6.672266 AGAACATATCATGACGGAGGTATT 57.328 37.500 0.00 0.00 0.00 1.89
3150 3764 6.459066 AGAACATATCATGACGGAGGTATTG 58.541 40.000 0.00 0.00 0.00 1.90
3151 3765 5.808366 ACATATCATGACGGAGGTATTGT 57.192 39.130 0.00 0.00 0.00 2.71
3152 3766 6.174720 ACATATCATGACGGAGGTATTGTT 57.825 37.500 0.00 0.00 0.00 2.83
3153 3767 6.223852 ACATATCATGACGGAGGTATTGTTC 58.776 40.000 0.00 0.00 0.00 3.18
3154 3768 3.159353 TCATGACGGAGGTATTGTTCG 57.841 47.619 0.00 0.00 0.00 3.95
3155 3769 2.494471 TCATGACGGAGGTATTGTTCGT 59.506 45.455 0.00 0.00 36.74 3.85
3156 3770 3.056393 TCATGACGGAGGTATTGTTCGTT 60.056 43.478 0.00 0.00 34.06 3.85
3157 3771 2.950433 TGACGGAGGTATTGTTCGTTC 58.050 47.619 0.00 0.00 34.06 3.95
3158 3772 1.916000 GACGGAGGTATTGTTCGTTCG 59.084 52.381 0.00 0.00 34.06 3.95
3159 3773 1.270550 ACGGAGGTATTGTTCGTTCGT 59.729 47.619 0.00 0.00 31.48 3.85
3160 3774 2.487762 ACGGAGGTATTGTTCGTTCGTA 59.512 45.455 0.00 0.00 34.00 3.43
3161 3775 3.103738 CGGAGGTATTGTTCGTTCGTAG 58.896 50.000 0.00 0.00 0.00 3.51
3162 3776 3.426695 CGGAGGTATTGTTCGTTCGTAGT 60.427 47.826 0.00 0.00 0.00 2.73
3163 3777 4.201812 CGGAGGTATTGTTCGTTCGTAGTA 60.202 45.833 0.00 0.00 0.00 1.82
3164 3778 5.269313 GGAGGTATTGTTCGTTCGTAGTAG 58.731 45.833 0.00 0.00 0.00 2.57
3165 3779 5.240713 AGGTATTGTTCGTTCGTAGTAGG 57.759 43.478 0.00 0.00 0.00 3.18
3166 3780 3.793492 GGTATTGTTCGTTCGTAGTAGGC 59.207 47.826 0.00 0.00 0.00 3.93
3167 3781 1.967762 TTGTTCGTTCGTAGTAGGCG 58.032 50.000 0.00 0.00 0.00 5.52
3168 3782 0.874390 TGTTCGTTCGTAGTAGGCGT 59.126 50.000 0.00 0.00 0.00 5.68
3169 3783 2.073056 TGTTCGTTCGTAGTAGGCGTA 58.927 47.619 0.00 0.00 0.00 4.42
3170 3784 2.094258 TGTTCGTTCGTAGTAGGCGTAG 59.906 50.000 0.00 0.00 0.00 3.51
3197 3811 2.426024 GCTGGAGCACATTGTTGATGAT 59.574 45.455 0.00 0.00 41.59 2.45
3199 3813 2.756207 TGGAGCACATTGTTGATGATGG 59.244 45.455 0.00 0.00 39.15 3.51
3208 3822 2.942804 TGTTGATGATGGTGTTGGTGT 58.057 42.857 0.00 0.00 0.00 4.16
3212 3826 2.224402 TGATGATGGTGTTGGTGTCGAA 60.224 45.455 0.00 0.00 0.00 3.71
3216 3830 0.462937 TGGTGTTGGTGTCGAACTGG 60.463 55.000 0.00 0.00 0.00 4.00
3220 3834 1.092921 GTTGGTGTCGAACTGGTGCA 61.093 55.000 0.00 0.00 0.00 4.57
3227 3841 2.031163 GAACTGGTGCAGACGGCT 59.969 61.111 0.00 0.00 45.15 5.52
3228 3842 1.598130 GAACTGGTGCAGACGGCTT 60.598 57.895 0.00 0.00 45.15 4.35
3246 6211 3.804873 GGCTTTGAAGACGATGAGTATCC 59.195 47.826 0.00 0.00 0.00 2.59
3250 6215 1.955080 GAAGACGATGAGTATCCCCGT 59.045 52.381 0.00 0.00 43.01 5.28
3252 6217 3.823369 ACGATGAGTATCCCCGTCT 57.177 52.632 0.00 0.00 37.54 4.18
3260 6225 0.179081 GTATCCCCGTCTGACTTGGC 60.179 60.000 6.21 0.00 0.00 4.52
3265 6231 1.079127 CCGTCTGACTTGGCCGAAT 60.079 57.895 6.21 0.00 0.00 3.34
3276 6242 2.584143 GCCGAATACGACCCGTGG 60.584 66.667 1.93 0.00 41.39 4.94
3292 6258 0.582005 GTGGTGACGAACTTGAGCAC 59.418 55.000 0.00 0.00 0.00 4.40
3294 6260 1.134521 TGGTGACGAACTTGAGCACTT 60.135 47.619 0.00 0.00 0.00 3.16
3296 6262 1.933853 GTGACGAACTTGAGCACTTGT 59.066 47.619 0.00 0.00 0.00 3.16
3300 6266 1.333524 CGAACTTGAGCACTTGTGCAG 60.334 52.381 24.82 16.57 37.25 4.41
3304 6270 0.464193 TTGAGCACTTGTGCAGAGCA 60.464 50.000 24.82 14.86 41.37 4.26
3333 6299 5.246307 CAAAAACCTAATTCGTCCTCTCCT 58.754 41.667 0.00 0.00 0.00 3.69
3335 6301 3.383698 ACCTAATTCGTCCTCTCCTGA 57.616 47.619 0.00 0.00 0.00 3.86
3364 6330 2.030007 TCGTAAAGATGAACGGTTCCGT 60.030 45.455 17.62 11.27 45.08 4.69
3366 6332 3.301642 CGTAAAGATGAACGGTTCCGTAC 59.698 47.826 17.21 8.20 42.15 3.67
3371 6337 0.752054 TGAACGGTTCCGTACACCTT 59.248 50.000 17.21 0.40 42.15 3.50
3378 6344 2.169330 GTTCCGTACACCTTCTCTCCT 58.831 52.381 0.00 0.00 0.00 3.69
3379 6345 1.835494 TCCGTACACCTTCTCTCCTG 58.165 55.000 0.00 0.00 0.00 3.86
3380 6346 1.075050 TCCGTACACCTTCTCTCCTGT 59.925 52.381 0.00 0.00 0.00 4.00
3386 6352 2.654079 CCTTCTCTCCTGTGCGCCT 61.654 63.158 4.18 0.00 0.00 5.52
3413 6379 1.534175 GCCGACGTTCAGGATAGAGTG 60.534 57.143 9.42 0.00 0.00 3.51
3414 6380 1.743958 CCGACGTTCAGGATAGAGTGT 59.256 52.381 0.00 0.00 0.00 3.55
3415 6381 2.478031 CCGACGTTCAGGATAGAGTGTG 60.478 54.545 0.00 0.00 0.00 3.82
3416 6382 2.161808 CGACGTTCAGGATAGAGTGTGT 59.838 50.000 0.00 0.00 0.00 3.72
3417 6383 3.728268 CGACGTTCAGGATAGAGTGTGTC 60.728 52.174 0.00 0.00 0.00 3.67
3418 6384 2.161808 ACGTTCAGGATAGAGTGTGTCG 59.838 50.000 0.00 0.00 0.00 4.35
3419 6385 2.161808 CGTTCAGGATAGAGTGTGTCGT 59.838 50.000 0.00 0.00 0.00 4.34
3420 6386 3.502920 GTTCAGGATAGAGTGTGTCGTG 58.497 50.000 0.99 0.99 34.43 4.35
3421 6387 2.092323 TCAGGATAGAGTGTGTCGTGG 58.908 52.381 6.84 0.00 34.05 4.94
3422 6388 2.092323 CAGGATAGAGTGTGTCGTGGA 58.908 52.381 0.00 0.00 30.70 4.02
3423 6389 2.690497 CAGGATAGAGTGTGTCGTGGAT 59.310 50.000 0.00 0.00 30.70 3.41
3424 6390 3.131223 CAGGATAGAGTGTGTCGTGGATT 59.869 47.826 0.00 0.00 30.70 3.01
3425 6391 3.769844 AGGATAGAGTGTGTCGTGGATTT 59.230 43.478 0.00 0.00 0.00 2.17
3426 6392 3.865745 GGATAGAGTGTGTCGTGGATTTG 59.134 47.826 0.00 0.00 0.00 2.32
3427 6393 2.910688 AGAGTGTGTCGTGGATTTGT 57.089 45.000 0.00 0.00 0.00 2.83
3428 6394 2.755650 AGAGTGTGTCGTGGATTTGTC 58.244 47.619 0.00 0.00 0.00 3.18
3429 6395 2.102420 AGAGTGTGTCGTGGATTTGTCA 59.898 45.455 0.00 0.00 0.00 3.58
3430 6396 2.210116 AGTGTGTCGTGGATTTGTCAC 58.790 47.619 0.00 0.00 0.00 3.67
3438 6404 3.729526 GTGGATTTGTCACGACAGATG 57.270 47.619 7.85 0.00 42.94 2.90
3439 6405 3.067106 GTGGATTTGTCACGACAGATGT 58.933 45.455 7.85 0.00 42.94 3.06
3440 6406 3.123621 GTGGATTTGTCACGACAGATGTC 59.876 47.826 7.85 2.78 42.94 3.06
3441 6407 2.673368 GGATTTGTCACGACAGATGTCC 59.327 50.000 7.85 7.06 42.94 4.02
3442 6408 3.589988 GATTTGTCACGACAGATGTCCT 58.410 45.455 7.85 0.00 42.94 3.85
3443 6409 3.469008 TTTGTCACGACAGATGTCCTT 57.531 42.857 7.37 0.00 42.94 3.36
3444 6410 4.594123 TTTGTCACGACAGATGTCCTTA 57.406 40.909 7.37 0.00 42.94 2.69
3445 6411 3.850122 TGTCACGACAGATGTCCTTAG 57.150 47.619 7.37 0.00 41.86 2.18
3446 6412 3.154710 TGTCACGACAGATGTCCTTAGT 58.845 45.455 7.37 0.00 41.86 2.24
3447 6413 3.057526 TGTCACGACAGATGTCCTTAGTG 60.058 47.826 7.37 9.26 41.86 2.74
3448 6414 3.190744 GTCACGACAGATGTCCTTAGTGA 59.809 47.826 13.81 13.81 41.86 3.41
3449 6415 3.824443 TCACGACAGATGTCCTTAGTGAA 59.176 43.478 14.85 4.19 41.86 3.18
3450 6416 4.279922 TCACGACAGATGTCCTTAGTGAAA 59.720 41.667 14.85 0.14 41.86 2.69
3451 6417 4.988540 CACGACAGATGTCCTTAGTGAAAA 59.011 41.667 7.37 0.00 41.86 2.29
3452 6418 5.119279 CACGACAGATGTCCTTAGTGAAAAG 59.881 44.000 7.37 0.00 41.86 2.27
3453 6419 4.627467 CGACAGATGTCCTTAGTGAAAAGG 59.373 45.833 7.37 0.00 46.35 3.11
3466 6432 8.077836 CTTAGTGAAAAGGACTTAGTTGTGAG 57.922 38.462 0.00 0.00 0.00 3.51
3467 6433 5.368989 AGTGAAAAGGACTTAGTTGTGAGG 58.631 41.667 0.00 0.00 0.00 3.86
3468 6434 5.104485 AGTGAAAAGGACTTAGTTGTGAGGT 60.104 40.000 0.00 0.00 0.00 3.85
3469 6435 5.236695 GTGAAAAGGACTTAGTTGTGAGGTC 59.763 44.000 0.00 0.00 0.00 3.85
3470 6436 5.104693 TGAAAAGGACTTAGTTGTGAGGTCA 60.105 40.000 0.00 0.00 0.00 4.02
3471 6437 5.367945 AAAGGACTTAGTTGTGAGGTCAA 57.632 39.130 0.00 0.00 0.00 3.18
3472 6438 4.338379 AGGACTTAGTTGTGAGGTCAAC 57.662 45.455 1.94 1.94 45.33 3.18
3473 6439 3.709653 AGGACTTAGTTGTGAGGTCAACA 59.290 43.478 11.22 0.00 46.78 3.33
3474 6440 3.808174 GGACTTAGTTGTGAGGTCAACAC 59.192 47.826 11.22 0.00 46.78 3.32
3475 6441 4.439057 GACTTAGTTGTGAGGTCAACACA 58.561 43.478 11.22 0.00 46.78 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 8.198109 GGCATGATACGTCTCCAAAGTATATAT 58.802 37.037 0.00 0.00 33.40 0.86
70 71 7.544622 GGCATGATACGTCTCCAAAGTATATA 58.455 38.462 0.00 0.00 33.40 0.86
71 72 6.398918 GGCATGATACGTCTCCAAAGTATAT 58.601 40.000 0.00 0.00 33.40 0.86
72 73 5.564063 CGGCATGATACGTCTCCAAAGTATA 60.564 44.000 0.00 0.00 33.40 1.47
73 74 4.632153 GGCATGATACGTCTCCAAAGTAT 58.368 43.478 0.00 0.00 35.57 2.12
74 75 3.490249 CGGCATGATACGTCTCCAAAGTA 60.490 47.826 0.00 0.00 0.00 2.24
75 76 2.738643 CGGCATGATACGTCTCCAAAGT 60.739 50.000 0.00 0.00 0.00 2.66
76 77 1.860950 CGGCATGATACGTCTCCAAAG 59.139 52.381 0.00 0.00 0.00 2.77
77 78 1.934589 CGGCATGATACGTCTCCAAA 58.065 50.000 0.00 0.00 0.00 3.28
78 79 0.529773 GCGGCATGATACGTCTCCAA 60.530 55.000 0.00 0.00 0.00 3.53
79 80 1.067416 GCGGCATGATACGTCTCCA 59.933 57.895 0.00 0.00 0.00 3.86
80 81 1.664965 GGCGGCATGATACGTCTCC 60.665 63.158 3.07 0.00 0.00 3.71
81 82 2.016704 CGGCGGCATGATACGTCTC 61.017 63.158 10.53 0.00 31.57 3.36
82 83 2.027605 CGGCGGCATGATACGTCT 59.972 61.111 10.53 0.00 31.57 4.18
83 84 3.702555 GCGGCGGCATGATACGTC 61.703 66.667 9.78 0.00 39.62 4.34
86 87 2.669569 ATGGCGGCGGCATGATAC 60.670 61.111 42.05 8.30 46.89 2.24
99 100 4.496336 AAGGAGCTCGGCCATGGC 62.496 66.667 29.47 29.47 41.06 4.40
100 101 2.515523 CAAGGAGCTCGGCCATGG 60.516 66.667 7.63 7.63 0.00 3.66
101 102 3.207669 GCAAGGAGCTCGGCCATG 61.208 66.667 7.83 0.00 41.15 3.66
102 103 4.496336 GGCAAGGAGCTCGGCCAT 62.496 66.667 27.84 0.19 45.70 4.40
104 105 4.722700 TTGGCAAGGAGCTCGGCC 62.723 66.667 26.74 26.74 46.58 6.13
105 106 2.439156 ATTGGCAAGGAGCTCGGC 60.439 61.111 7.83 11.17 44.79 5.54
106 107 0.677731 TTGATTGGCAAGGAGCTCGG 60.678 55.000 7.83 0.68 44.79 4.63
107 108 1.167851 TTTGATTGGCAAGGAGCTCG 58.832 50.000 7.83 0.00 44.79 5.03
108 109 3.665745 TTTTTGATTGGCAAGGAGCTC 57.334 42.857 4.71 4.71 44.79 4.09
109 110 4.628963 AATTTTTGATTGGCAAGGAGCT 57.371 36.364 5.96 0.00 44.79 4.09
110 111 8.491331 TTTATAATTTTTGATTGGCAAGGAGC 57.509 30.769 5.96 0.00 44.65 4.70
116 117 9.862371 ACACGTATTTATAATTTTTGATTGGCA 57.138 25.926 0.00 0.00 0.00 4.92
181 182 5.930135 AGTAATGACCTTGTGAGACTTGTT 58.070 37.500 0.00 0.00 0.00 2.83
210 214 7.670364 TCTGATCATTTAGTGTCTCAGTTTGA 58.330 34.615 0.00 0.00 38.58 2.69
286 292 5.182001 AGAACATGAAGAAGAACCGAAATGG 59.818 40.000 0.00 0.00 46.41 3.16
289 295 4.755123 GGAGAACATGAAGAAGAACCGAAA 59.245 41.667 0.00 0.00 0.00 3.46
329 335 2.487762 TCGAACACGGATTTAGGTACGT 59.512 45.455 0.00 0.00 39.77 3.57
437 443 2.816087 ACAGTTCAGTGAATGTGATGGC 59.184 45.455 19.69 2.33 0.00 4.40
467 473 4.436050 CGTGAAGTGCATCTCCATTTACAC 60.436 45.833 0.00 0.00 0.00 2.90
500 506 4.346734 ACAAATAGCTGAGTCGCAAATG 57.653 40.909 0.00 5.58 0.00 2.32
501 507 6.494893 TTAACAAATAGCTGAGTCGCAAAT 57.505 33.333 0.00 1.07 0.00 2.32
502 508 5.933187 TTAACAAATAGCTGAGTCGCAAA 57.067 34.783 0.00 0.00 0.00 3.68
503 509 5.933187 TTTAACAAATAGCTGAGTCGCAA 57.067 34.783 0.00 0.00 0.00 4.85
504 510 5.933187 TTTTAACAAATAGCTGAGTCGCA 57.067 34.783 0.00 0.00 0.00 5.10
507 513 7.175119 AGGAGGTTTTTAACAAATAGCTGAGTC 59.825 37.037 0.00 0.00 0.00 3.36
518 524 4.763279 GGATTCCGAGGAGGTTTTTAACAA 59.237 41.667 0.00 0.00 41.99 2.83
519 525 4.329392 GGATTCCGAGGAGGTTTTTAACA 58.671 43.478 0.00 0.00 41.99 2.41
523 529 1.005569 GGGGATTCCGAGGAGGTTTTT 59.994 52.381 0.00 0.00 41.99 1.94
532 538 2.565841 GTTTGATCTGGGGATTCCGAG 58.434 52.381 0.00 0.00 39.85 4.63
564 598 6.043411 GGTAATAAAATCACTCTCTCGTGCT 58.957 40.000 0.00 0.00 34.92 4.40
599 634 2.932622 GCATTATCCCGCTCGATGATGT 60.933 50.000 12.94 0.00 38.11 3.06
640 942 6.513806 TGTAATGTATTGCATGCAGTTTCT 57.486 33.333 21.52 8.10 37.96 2.52
873 1178 5.180271 GGTGAATATTGGTTCTGGTACGAA 58.820 41.667 0.00 0.00 0.00 3.85
1023 1330 0.535780 CTGAGCACACCAGGAGCAAA 60.536 55.000 0.00 0.00 0.00 3.68
1074 1381 2.683968 CTGCTTAACTTGTCGCACCTA 58.316 47.619 0.00 0.00 0.00 3.08
1120 1427 2.352814 GCTGGACGATGTTGTACACTCT 60.353 50.000 0.00 0.00 0.00 3.24
1151 1458 1.133853 GCTCTTCCCTCATGGCAGAAT 60.134 52.381 0.00 0.00 0.00 2.40
1188 1495 0.254178 GGAAATGGAGCCTGAGCAGA 59.746 55.000 0.00 0.00 43.56 4.26
1685 2000 3.809832 CGATGGAGCTAATCGGTTCAAAT 59.190 43.478 18.94 0.00 42.47 2.32
1688 2003 2.509052 CGATGGAGCTAATCGGTTCA 57.491 50.000 18.94 0.00 42.47 3.18
1697 2012 4.630069 GCAAACTTCTTTACGATGGAGCTA 59.370 41.667 0.00 0.00 0.00 3.32
1783 2100 2.740447 CCGTGGAGGTAGTTAGTTTTGC 59.260 50.000 0.00 0.00 34.51 3.68
1824 2172 5.181748 GTTTTCAGAGATGTAGCACAGGAT 58.818 41.667 0.00 0.00 0.00 3.24
1825 2173 4.569943 GTTTTCAGAGATGTAGCACAGGA 58.430 43.478 0.00 0.00 0.00 3.86
1839 2215 4.250464 ACTGTCACTGTTTCGTTTTCAGA 58.750 39.130 0.00 0.00 33.93 3.27
1879 2284 5.751028 CAGAACTATAGTTGCCTTCTGCTAC 59.249 44.000 22.68 3.90 44.69 3.58
1893 2298 7.221067 GTGACGGATGAAGTTTCAGAACTATAG 59.779 40.741 0.00 0.00 45.18 1.31
1983 2392 7.750229 AATAGAGTTTTTCATTCTGCACTCA 57.250 32.000 0.00 0.00 34.33 3.41
2123 2570 2.663852 CGTCCAGCGTCGGGTTTT 60.664 61.111 0.00 0.00 35.54 2.43
2229 2676 3.493699 GGTTGTGGTAGTACTGCTTGTCA 60.494 47.826 10.95 0.00 0.00 3.58
2340 2787 0.234106 CGTCGTCACTGTACGTCTGT 59.766 55.000 0.00 0.00 43.31 3.41
2395 2842 1.270518 CGGTATGCTCCCCATCTTCAG 60.271 57.143 0.00 0.00 35.34 3.02
2604 3062 1.111277 AAAGTGTGTCCTTTGGTGCC 58.889 50.000 0.00 0.00 33.50 5.01
2693 3151 4.588528 ACAAAATAGTGTGGCATCCTTTGT 59.411 37.500 0.00 0.00 32.46 2.83
2741 3355 1.032114 GTGGCTTGTGGGTAGATGGC 61.032 60.000 0.00 0.00 0.00 4.40
2745 3359 1.213182 TGTTTGTGGCTTGTGGGTAGA 59.787 47.619 0.00 0.00 0.00 2.59
2746 3360 1.686355 TGTTTGTGGCTTGTGGGTAG 58.314 50.000 0.00 0.00 0.00 3.18
2747 3361 2.235016 GATGTTTGTGGCTTGTGGGTA 58.765 47.619 0.00 0.00 0.00 3.69
2748 3362 1.039856 GATGTTTGTGGCTTGTGGGT 58.960 50.000 0.00 0.00 0.00 4.51
2751 3365 3.441496 AGTTGATGTTTGTGGCTTGTG 57.559 42.857 0.00 0.00 0.00 3.33
2752 3366 4.202111 GGTAAGTTGATGTTTGTGGCTTGT 60.202 41.667 0.00 0.00 0.00 3.16
2753 3367 4.037923 AGGTAAGTTGATGTTTGTGGCTTG 59.962 41.667 0.00 0.00 0.00 4.01
2755 3369 3.832527 AGGTAAGTTGATGTTTGTGGCT 58.167 40.909 0.00 0.00 0.00 4.75
2756 3370 4.037446 TGAAGGTAAGTTGATGTTTGTGGC 59.963 41.667 0.00 0.00 0.00 5.01
2762 3376 6.428159 GTGAGTGATGAAGGTAAGTTGATGTT 59.572 38.462 0.00 0.00 0.00 2.71
2891 3505 1.804748 GAGGGACTTGCAAAACTACCG 59.195 52.381 0.00 0.00 41.55 4.02
2960 3574 5.179555 GCAGGGAGTACTTTTTGTTCTAGTG 59.820 44.000 0.00 0.00 0.00 2.74
2977 3591 2.898729 ACATTATGAGACGCAGGGAG 57.101 50.000 0.00 0.00 0.00 4.30
2978 3592 3.958147 TCTTACATTATGAGACGCAGGGA 59.042 43.478 0.00 0.00 0.00 4.20
2979 3593 4.051922 GTCTTACATTATGAGACGCAGGG 58.948 47.826 0.00 0.00 34.53 4.45
3012 3626 2.729882 CGCTTTTTGACACTACGCTAGT 59.270 45.455 0.00 0.00 40.28 2.57
3013 3627 2.729882 ACGCTTTTTGACACTACGCTAG 59.270 45.455 0.00 0.00 0.00 3.42
3014 3628 2.727798 GACGCTTTTTGACACTACGCTA 59.272 45.455 0.00 0.00 0.00 4.26
3015 3629 1.525619 GACGCTTTTTGACACTACGCT 59.474 47.619 0.00 0.00 0.00 5.07
3016 3630 1.525619 AGACGCTTTTTGACACTACGC 59.474 47.619 0.00 0.00 0.00 4.42
3017 3631 3.854286 AAGACGCTTTTTGACACTACG 57.146 42.857 0.00 0.00 0.00 3.51
3018 3632 5.646467 TGTAAGACGCTTTTTGACACTAC 57.354 39.130 0.00 0.00 0.00 2.73
3019 3633 6.854496 AATGTAAGACGCTTTTTGACACTA 57.146 33.333 0.00 0.00 0.00 2.74
3020 3634 5.751243 AATGTAAGACGCTTTTTGACACT 57.249 34.783 0.00 0.00 0.00 3.55
3021 3635 6.523201 CCATAATGTAAGACGCTTTTTGACAC 59.477 38.462 0.00 0.00 0.00 3.67
3022 3636 6.348950 CCCATAATGTAAGACGCTTTTTGACA 60.349 38.462 0.00 0.00 0.00 3.58
3023 3637 6.027749 CCCATAATGTAAGACGCTTTTTGAC 58.972 40.000 0.00 0.00 0.00 3.18
3024 3638 5.941058 TCCCATAATGTAAGACGCTTTTTGA 59.059 36.000 0.00 0.00 0.00 2.69
3025 3639 6.189677 TCCCATAATGTAAGACGCTTTTTG 57.810 37.500 0.00 0.00 0.00 2.44
3026 3640 6.183360 CCATCCCATAATGTAAGACGCTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
3027 3641 5.299279 CCATCCCATAATGTAAGACGCTTTT 59.701 40.000 0.00 0.00 0.00 2.27
3028 3642 4.821805 CCATCCCATAATGTAAGACGCTTT 59.178 41.667 0.00 0.00 0.00 3.51
3029 3643 4.102524 TCCATCCCATAATGTAAGACGCTT 59.897 41.667 0.00 0.00 0.00 4.68
3030 3644 3.646162 TCCATCCCATAATGTAAGACGCT 59.354 43.478 0.00 0.00 0.00 5.07
3031 3645 3.997021 CTCCATCCCATAATGTAAGACGC 59.003 47.826 0.00 0.00 0.00 5.19
3032 3646 4.283467 TCCTCCATCCCATAATGTAAGACG 59.717 45.833 0.00 0.00 0.00 4.18
3033 3647 5.825593 TCCTCCATCCCATAATGTAAGAC 57.174 43.478 0.00 0.00 0.00 3.01
3034 3648 6.840090 TTTCCTCCATCCCATAATGTAAGA 57.160 37.500 0.00 0.00 0.00 2.10
3035 3649 7.337942 GCTATTTCCTCCATCCCATAATGTAAG 59.662 40.741 0.00 0.00 0.00 2.34
3036 3650 7.175104 GCTATTTCCTCCATCCCATAATGTAA 58.825 38.462 0.00 0.00 0.00 2.41
3037 3651 6.274436 TGCTATTTCCTCCATCCCATAATGTA 59.726 38.462 0.00 0.00 0.00 2.29
3038 3652 5.074929 TGCTATTTCCTCCATCCCATAATGT 59.925 40.000 0.00 0.00 0.00 2.71
3039 3653 5.573219 TGCTATTTCCTCCATCCCATAATG 58.427 41.667 0.00 0.00 0.00 1.90
3040 3654 5.865977 TGCTATTTCCTCCATCCCATAAT 57.134 39.130 0.00 0.00 0.00 1.28
3041 3655 5.865977 ATGCTATTTCCTCCATCCCATAA 57.134 39.130 0.00 0.00 0.00 1.90
3042 3656 6.032039 AGTATGCTATTTCCTCCATCCCATA 58.968 40.000 0.00 0.00 0.00 2.74
3043 3657 4.854436 AGTATGCTATTTCCTCCATCCCAT 59.146 41.667 0.00 0.00 0.00 4.00
3044 3658 4.242811 AGTATGCTATTTCCTCCATCCCA 58.757 43.478 0.00 0.00 0.00 4.37
3045 3659 4.917906 AGTATGCTATTTCCTCCATCCC 57.082 45.455 0.00 0.00 0.00 3.85
3046 3660 6.859112 TCTAGTATGCTATTTCCTCCATCC 57.141 41.667 0.00 0.00 0.00 3.51
3047 3661 9.561069 TTTTTCTAGTATGCTATTTCCTCCATC 57.439 33.333 0.00 0.00 0.00 3.51
3059 3673 9.515226 TGTGTTTTCCTATTTTTCTAGTATGCT 57.485 29.630 0.00 0.00 0.00 3.79
3064 3678 9.797556 GTTGTTGTGTTTTCCTATTTTTCTAGT 57.202 29.630 0.00 0.00 0.00 2.57
3065 3679 9.796120 TGTTGTTGTGTTTTCCTATTTTTCTAG 57.204 29.630 0.00 0.00 0.00 2.43
3067 3681 9.665719 AATGTTGTTGTGTTTTCCTATTTTTCT 57.334 25.926 0.00 0.00 0.00 2.52
3068 3682 9.701355 CAATGTTGTTGTGTTTTCCTATTTTTC 57.299 29.630 0.00 0.00 0.00 2.29
3069 3683 8.180920 GCAATGTTGTTGTGTTTTCCTATTTTT 58.819 29.630 0.00 0.00 0.00 1.94
3070 3684 7.335422 TGCAATGTTGTTGTGTTTTCCTATTTT 59.665 29.630 0.00 0.00 0.00 1.82
3071 3685 6.820656 TGCAATGTTGTTGTGTTTTCCTATTT 59.179 30.769 0.00 0.00 0.00 1.40
3072 3686 6.257630 GTGCAATGTTGTTGTGTTTTCCTATT 59.742 34.615 0.00 0.00 0.00 1.73
3073 3687 5.752955 GTGCAATGTTGTTGTGTTTTCCTAT 59.247 36.000 0.00 0.00 0.00 2.57
3074 3688 5.105752 GTGCAATGTTGTTGTGTTTTCCTA 58.894 37.500 0.00 0.00 0.00 2.94
3075 3689 3.932089 GTGCAATGTTGTTGTGTTTTCCT 59.068 39.130 0.00 0.00 0.00 3.36
3076 3690 3.681897 TGTGCAATGTTGTTGTGTTTTCC 59.318 39.130 0.00 0.00 0.00 3.13
3077 3691 4.917887 TGTGCAATGTTGTTGTGTTTTC 57.082 36.364 0.00 0.00 0.00 2.29
3078 3692 4.694509 ACATGTGCAATGTTGTTGTGTTTT 59.305 33.333 0.00 0.00 0.00 2.43
3079 3693 4.252073 ACATGTGCAATGTTGTTGTGTTT 58.748 34.783 0.00 0.00 0.00 2.83
3080 3694 3.859443 ACATGTGCAATGTTGTTGTGTT 58.141 36.364 0.00 0.00 0.00 3.32
3081 3695 3.523606 ACATGTGCAATGTTGTTGTGT 57.476 38.095 0.00 0.00 0.00 3.72
3082 3696 4.802563 TGTTACATGTGCAATGTTGTTGTG 59.197 37.500 9.11 0.00 33.76 3.33
3083 3697 5.003692 TGTTACATGTGCAATGTTGTTGT 57.996 34.783 9.11 4.04 33.76 3.32
3084 3698 5.290400 TGTTGTTACATGTGCAATGTTGTTG 59.710 36.000 9.11 0.00 33.76 3.33
3085 3699 5.414360 TGTTGTTACATGTGCAATGTTGTT 58.586 33.333 9.11 0.00 33.76 2.83
3086 3700 5.003692 TGTTGTTACATGTGCAATGTTGT 57.996 34.783 9.11 8.12 33.76 3.32
3087 3701 5.276773 GGTTGTTGTTACATGTGCAATGTTG 60.277 40.000 9.11 3.12 33.44 3.33
3088 3702 4.808364 GGTTGTTGTTACATGTGCAATGTT 59.192 37.500 9.11 5.19 33.44 2.71
3089 3703 4.367450 GGTTGTTGTTACATGTGCAATGT 58.633 39.130 9.11 15.56 33.44 2.71
3090 3704 3.424861 CGGTTGTTGTTACATGTGCAATG 59.575 43.478 9.11 0.00 33.44 2.82
3091 3705 3.637432 CGGTTGTTGTTACATGTGCAAT 58.363 40.909 9.11 0.00 33.44 3.56
3092 3706 2.796383 GCGGTTGTTGTTACATGTGCAA 60.796 45.455 9.11 10.84 33.44 4.08
3093 3707 1.268794 GCGGTTGTTGTTACATGTGCA 60.269 47.619 9.11 4.65 33.44 4.57
3094 3708 1.404477 GCGGTTGTTGTTACATGTGC 58.596 50.000 9.11 1.72 33.44 4.57
3095 3709 1.003331 ACGCGGTTGTTGTTACATGTG 60.003 47.619 12.47 0.00 33.44 3.21
3096 3710 1.301423 ACGCGGTTGTTGTTACATGT 58.699 45.000 12.47 2.69 33.44 3.21
3097 3711 3.523142 TTACGCGGTTGTTGTTACATG 57.477 42.857 12.47 0.00 33.44 3.21
3098 3712 4.213694 TCATTTACGCGGTTGTTGTTACAT 59.786 37.500 12.47 0.00 33.44 2.29
3099 3713 3.558829 TCATTTACGCGGTTGTTGTTACA 59.441 39.130 12.47 0.00 0.00 2.41
3100 3714 4.084433 TCTCATTTACGCGGTTGTTGTTAC 60.084 41.667 12.47 0.00 0.00 2.50
3101 3715 4.056740 TCTCATTTACGCGGTTGTTGTTA 58.943 39.130 12.47 0.00 0.00 2.41
3102 3716 2.873472 TCTCATTTACGCGGTTGTTGTT 59.127 40.909 12.47 0.00 0.00 2.83
3103 3717 2.222445 GTCTCATTTACGCGGTTGTTGT 59.778 45.455 12.47 0.00 0.00 3.32
3104 3718 2.222213 TGTCTCATTTACGCGGTTGTTG 59.778 45.455 12.47 1.17 0.00 3.33
3105 3719 2.485903 TGTCTCATTTACGCGGTTGTT 58.514 42.857 12.47 0.00 0.00 2.83
3106 3720 2.157834 TGTCTCATTTACGCGGTTGT 57.842 45.000 12.47 0.00 0.00 3.32
3107 3721 2.734606 TCTTGTCTCATTTACGCGGTTG 59.265 45.455 12.47 1.97 0.00 3.77
3108 3722 3.034721 TCTTGTCTCATTTACGCGGTT 57.965 42.857 12.47 0.00 0.00 4.44
3109 3723 2.735134 GTTCTTGTCTCATTTACGCGGT 59.265 45.455 12.47 0.00 0.00 5.68
3110 3724 2.734606 TGTTCTTGTCTCATTTACGCGG 59.265 45.455 12.47 0.00 0.00 6.46
3111 3725 4.584029 ATGTTCTTGTCTCATTTACGCG 57.416 40.909 3.53 3.53 0.00 6.01
3112 3726 7.234187 TGATATGTTCTTGTCTCATTTACGC 57.766 36.000 0.00 0.00 0.00 4.42
3113 3727 9.034544 TCATGATATGTTCTTGTCTCATTTACG 57.965 33.333 0.00 0.00 32.65 3.18
3115 3729 9.034544 CGTCATGATATGTTCTTGTCTCATTTA 57.965 33.333 0.00 0.00 32.65 1.40
3116 3730 7.011763 CCGTCATGATATGTTCTTGTCTCATTT 59.988 37.037 0.00 0.00 32.65 2.32
3117 3731 6.481313 CCGTCATGATATGTTCTTGTCTCATT 59.519 38.462 0.00 0.00 32.65 2.57
3118 3732 5.987953 CCGTCATGATATGTTCTTGTCTCAT 59.012 40.000 0.00 0.00 32.65 2.90
3119 3733 5.127031 TCCGTCATGATATGTTCTTGTCTCA 59.873 40.000 0.00 0.00 32.65 3.27
3120 3734 5.592054 TCCGTCATGATATGTTCTTGTCTC 58.408 41.667 0.00 0.00 32.65 3.36
3121 3735 5.452496 CCTCCGTCATGATATGTTCTTGTCT 60.452 44.000 0.00 0.00 32.65 3.41
3122 3736 4.747108 CCTCCGTCATGATATGTTCTTGTC 59.253 45.833 0.00 0.00 32.65 3.18
3123 3737 4.162320 ACCTCCGTCATGATATGTTCTTGT 59.838 41.667 0.00 0.00 32.65 3.16
3124 3738 4.697514 ACCTCCGTCATGATATGTTCTTG 58.302 43.478 0.00 0.00 0.00 3.02
3125 3739 6.672266 ATACCTCCGTCATGATATGTTCTT 57.328 37.500 0.00 0.00 0.00 2.52
3126 3740 6.042093 ACAATACCTCCGTCATGATATGTTCT 59.958 38.462 0.00 0.00 0.00 3.01
3127 3741 6.223852 ACAATACCTCCGTCATGATATGTTC 58.776 40.000 0.00 0.00 0.00 3.18
3128 3742 6.174720 ACAATACCTCCGTCATGATATGTT 57.825 37.500 0.00 0.00 0.00 2.71
3129 3743 5.808366 ACAATACCTCCGTCATGATATGT 57.192 39.130 0.00 0.00 0.00 2.29
3130 3744 5.346011 CGAACAATACCTCCGTCATGATATG 59.654 44.000 0.00 0.00 0.00 1.78
3131 3745 5.010719 ACGAACAATACCTCCGTCATGATAT 59.989 40.000 0.00 0.00 0.00 1.63
3132 3746 4.340097 ACGAACAATACCTCCGTCATGATA 59.660 41.667 0.00 0.00 0.00 2.15
3133 3747 3.132289 ACGAACAATACCTCCGTCATGAT 59.868 43.478 0.00 0.00 0.00 2.45
3134 3748 2.494471 ACGAACAATACCTCCGTCATGA 59.506 45.455 0.00 0.00 0.00 3.07
3135 3749 2.888594 ACGAACAATACCTCCGTCATG 58.111 47.619 0.00 0.00 0.00 3.07
3136 3750 3.518590 GAACGAACAATACCTCCGTCAT 58.481 45.455 0.00 0.00 32.64 3.06
3137 3751 2.669113 CGAACGAACAATACCTCCGTCA 60.669 50.000 0.00 0.00 32.64 4.35
3138 3752 1.916000 CGAACGAACAATACCTCCGTC 59.084 52.381 0.00 0.00 32.64 4.79
3139 3753 1.270550 ACGAACGAACAATACCTCCGT 59.729 47.619 0.14 0.00 34.74 4.69
3140 3754 1.986698 ACGAACGAACAATACCTCCG 58.013 50.000 0.14 0.00 0.00 4.63
3141 3755 4.102035 ACTACGAACGAACAATACCTCC 57.898 45.455 0.14 0.00 0.00 4.30
3142 3756 5.269313 CCTACTACGAACGAACAATACCTC 58.731 45.833 0.14 0.00 0.00 3.85
3143 3757 4.439289 GCCTACTACGAACGAACAATACCT 60.439 45.833 0.14 0.00 0.00 3.08
3144 3758 3.793492 GCCTACTACGAACGAACAATACC 59.207 47.826 0.14 0.00 0.00 2.73
3145 3759 3.479949 CGCCTACTACGAACGAACAATAC 59.520 47.826 0.14 0.00 0.00 1.89
3146 3760 3.126858 ACGCCTACTACGAACGAACAATA 59.873 43.478 0.14 0.00 0.00 1.90
3147 3761 2.095059 ACGCCTACTACGAACGAACAAT 60.095 45.455 0.14 0.00 0.00 2.71
3148 3762 1.266718 ACGCCTACTACGAACGAACAA 59.733 47.619 0.14 0.00 0.00 2.83
3149 3763 0.874390 ACGCCTACTACGAACGAACA 59.126 50.000 0.14 0.00 0.00 3.18
3150 3764 2.698472 CTACGCCTACTACGAACGAAC 58.302 52.381 0.14 0.00 0.00 3.95
3151 3765 1.062587 GCTACGCCTACTACGAACGAA 59.937 52.381 0.14 0.00 0.00 3.85
3152 3766 0.652592 GCTACGCCTACTACGAACGA 59.347 55.000 0.14 0.00 0.00 3.85
3153 3767 0.654683 AGCTACGCCTACTACGAACG 59.345 55.000 0.00 0.00 0.00 3.95
3154 3768 1.859197 GCAGCTACGCCTACTACGAAC 60.859 57.143 0.00 0.00 0.00 3.95
3155 3769 0.379669 GCAGCTACGCCTACTACGAA 59.620 55.000 0.00 0.00 0.00 3.85
3156 3770 0.463295 AGCAGCTACGCCTACTACGA 60.463 55.000 0.00 0.00 0.00 3.43
3157 3771 0.317103 CAGCAGCTACGCCTACTACG 60.317 60.000 0.00 0.00 0.00 3.51
3158 3772 0.595310 GCAGCAGCTACGCCTACTAC 60.595 60.000 0.00 0.00 37.91 2.73
3159 3773 1.734137 GCAGCAGCTACGCCTACTA 59.266 57.895 0.00 0.00 37.91 1.82
3160 3774 2.496817 GCAGCAGCTACGCCTACT 59.503 61.111 0.00 0.00 37.91 2.57
3175 3789 2.814842 TCATCAACAATGTGCTCCAGCA 60.815 45.455 0.00 0.00 40.49 4.41
3176 3790 1.814394 TCATCAACAATGTGCTCCAGC 59.186 47.619 0.00 0.00 36.68 4.85
3177 3791 3.181490 CCATCATCAACAATGTGCTCCAG 60.181 47.826 0.00 0.00 36.68 3.86
3178 3792 2.756207 CCATCATCAACAATGTGCTCCA 59.244 45.455 0.00 0.00 36.68 3.86
3179 3793 2.756760 ACCATCATCAACAATGTGCTCC 59.243 45.455 0.00 0.00 36.68 4.70
3180 3794 3.192001 ACACCATCATCAACAATGTGCTC 59.808 43.478 0.00 0.00 36.68 4.26
3181 3795 3.159472 ACACCATCATCAACAATGTGCT 58.841 40.909 0.00 0.00 36.68 4.40
3182 3796 3.581024 ACACCATCATCAACAATGTGC 57.419 42.857 0.00 0.00 36.68 4.57
3183 3797 4.239304 CCAACACCATCATCAACAATGTG 58.761 43.478 0.00 0.00 36.68 3.21
3184 3798 3.896888 ACCAACACCATCATCAACAATGT 59.103 39.130 0.00 0.00 36.68 2.71
3185 3799 4.239304 CACCAACACCATCATCAACAATG 58.761 43.478 0.00 0.00 36.65 2.82
3186 3800 3.896888 ACACCAACACCATCATCAACAAT 59.103 39.130 0.00 0.00 0.00 2.71
3187 3801 3.295093 ACACCAACACCATCATCAACAA 58.705 40.909 0.00 0.00 0.00 2.83
3197 3811 0.462937 CCAGTTCGACACCAACACCA 60.463 55.000 0.00 0.00 0.00 4.17
3199 3813 0.655733 CACCAGTTCGACACCAACAC 59.344 55.000 0.00 0.00 0.00 3.32
3208 3822 2.338620 CCGTCTGCACCAGTTCGA 59.661 61.111 11.48 0.00 34.39 3.71
3212 3826 1.893808 CAAAGCCGTCTGCACCAGT 60.894 57.895 0.00 0.00 44.83 4.00
3216 3830 0.235926 GTCTTCAAAGCCGTCTGCAC 59.764 55.000 0.00 0.00 44.83 4.57
3220 3834 1.272490 TCATCGTCTTCAAAGCCGTCT 59.728 47.619 0.00 0.00 0.00 4.18
3227 3841 3.181479 CGGGGATACTCATCGTCTTCAAA 60.181 47.826 0.00 0.00 36.02 2.69
3228 3842 2.361119 CGGGGATACTCATCGTCTTCAA 59.639 50.000 0.00 0.00 36.02 2.69
3244 6209 3.319198 GGCCAAGTCAGACGGGGA 61.319 66.667 15.52 0.00 0.00 4.81
3246 6211 2.521958 ATTCGGCCAAGTCAGACGGG 62.522 60.000 2.24 9.36 0.00 5.28
3250 6215 1.135199 GTCGTATTCGGCCAAGTCAGA 60.135 52.381 2.24 0.00 35.48 3.27
3252 6217 3.429043 GTCGTATTCGGCCAAGTCA 57.571 52.632 2.24 0.00 35.48 3.41
3260 6225 1.517694 CACCACGGGTCGTATTCGG 60.518 63.158 0.00 0.00 38.32 4.30
3265 6231 1.896183 TTCGTCACCACGGGTCGTA 60.896 57.895 0.00 0.00 46.70 3.43
3276 6242 1.933853 ACAAGTGCTCAAGTTCGTCAC 59.066 47.619 0.00 0.00 0.00 3.67
3296 6262 1.408702 GTTTTTGGGAAGTGCTCTGCA 59.591 47.619 0.00 0.00 35.60 4.41
3300 6266 5.468540 AATTAGGTTTTTGGGAAGTGCTC 57.531 39.130 0.00 0.00 0.00 4.26
3304 6270 4.521639 GGACGAATTAGGTTTTTGGGAAGT 59.478 41.667 0.00 0.00 0.00 3.01
3333 6299 4.670896 TCATCTTTACGATCCTGCATCA 57.329 40.909 0.00 0.00 0.00 3.07
3335 6301 3.804325 CGTTCATCTTTACGATCCTGCAT 59.196 43.478 0.00 0.00 40.03 3.96
3364 6330 0.888619 CGCACAGGAGAGAAGGTGTA 59.111 55.000 0.00 0.00 33.88 2.90
3366 6332 1.739562 GCGCACAGGAGAGAAGGTG 60.740 63.158 0.30 0.00 0.00 4.00
3371 6337 2.021068 GCATAGGCGCACAGGAGAGA 62.021 60.000 10.83 0.00 0.00 3.10
3397 6363 2.161808 CGACACACTCTATCCTGAACGT 59.838 50.000 0.00 0.00 0.00 3.99
3402 6368 2.092323 TCCACGACACACTCTATCCTG 58.908 52.381 0.00 0.00 0.00 3.86
3403 6369 2.509166 TCCACGACACACTCTATCCT 57.491 50.000 0.00 0.00 0.00 3.24
3408 6374 2.102420 TGACAAATCCACGACACACTCT 59.898 45.455 0.00 0.00 0.00 3.24
3418 6384 3.067106 ACATCTGTCGTGACAAATCCAC 58.933 45.455 4.03 0.00 41.33 4.02
3419 6385 3.325870 GACATCTGTCGTGACAAATCCA 58.674 45.455 4.03 0.00 41.33 3.41
3420 6386 2.673368 GGACATCTGTCGTGACAAATCC 59.327 50.000 4.03 5.24 45.65 3.01
3421 6387 3.589988 AGGACATCTGTCGTGACAAATC 58.410 45.455 4.03 0.14 45.65 2.17
3422 6388 3.685139 AGGACATCTGTCGTGACAAAT 57.315 42.857 4.03 0.00 45.65 2.32
3423 6389 3.469008 AAGGACATCTGTCGTGACAAA 57.531 42.857 6.32 0.00 45.65 2.83
3424 6390 3.572682 ACTAAGGACATCTGTCGTGACAA 59.427 43.478 6.32 0.00 45.65 3.18
3425 6391 3.057526 CACTAAGGACATCTGTCGTGACA 60.058 47.826 6.32 2.28 45.65 3.58
3426 6392 3.190744 TCACTAAGGACATCTGTCGTGAC 59.809 47.826 12.02 0.00 45.65 3.67
3427 6393 3.418047 TCACTAAGGACATCTGTCGTGA 58.582 45.455 12.02 12.02 45.65 4.35
3428 6394 3.850122 TCACTAAGGACATCTGTCGTG 57.150 47.619 6.32 7.73 45.65 4.35
3429 6395 4.866508 TTTCACTAAGGACATCTGTCGT 57.133 40.909 4.36 2.15 45.65 4.34
3430 6396 4.627467 CCTTTTCACTAAGGACATCTGTCG 59.373 45.833 4.36 0.00 46.28 4.35
3431 6397 5.794894 TCCTTTTCACTAAGGACATCTGTC 58.205 41.667 1.59 1.59 46.73 3.51
3432 6398 5.825593 TCCTTTTCACTAAGGACATCTGT 57.174 39.130 1.08 0.00 46.73 3.41
3440 6406 6.990349 TCACAACTAAGTCCTTTTCACTAAGG 59.010 38.462 0.00 0.00 45.01 2.69
3441 6407 7.171678 CCTCACAACTAAGTCCTTTTCACTAAG 59.828 40.741 0.00 0.00 0.00 2.18
3442 6408 6.990349 CCTCACAACTAAGTCCTTTTCACTAA 59.010 38.462 0.00 0.00 0.00 2.24
3443 6409 6.099269 ACCTCACAACTAAGTCCTTTTCACTA 59.901 38.462 0.00 0.00 0.00 2.74
3444 6410 5.104485 ACCTCACAACTAAGTCCTTTTCACT 60.104 40.000 0.00 0.00 0.00 3.41
3445 6411 5.123936 ACCTCACAACTAAGTCCTTTTCAC 58.876 41.667 0.00 0.00 0.00 3.18
3446 6412 5.104693 TGACCTCACAACTAAGTCCTTTTCA 60.105 40.000 0.00 0.00 0.00 2.69
3447 6413 5.365619 TGACCTCACAACTAAGTCCTTTTC 58.634 41.667 0.00 0.00 0.00 2.29
3448 6414 5.367945 TGACCTCACAACTAAGTCCTTTT 57.632 39.130 0.00 0.00 0.00 2.27
3449 6415 5.123936 GTTGACCTCACAACTAAGTCCTTT 58.876 41.667 0.00 0.00 44.34 3.11
3450 6416 4.163458 TGTTGACCTCACAACTAAGTCCTT 59.837 41.667 11.73 0.00 46.79 3.36
3451 6417 3.709653 TGTTGACCTCACAACTAAGTCCT 59.290 43.478 11.73 0.00 46.79 3.85
3452 6418 3.808174 GTGTTGACCTCACAACTAAGTCC 59.192 47.826 11.73 0.00 46.79 3.85
3453 6419 4.439057 TGTGTTGACCTCACAACTAAGTC 58.561 43.478 11.73 0.00 46.79 3.01
3454 6420 4.481368 TGTGTTGACCTCACAACTAAGT 57.519 40.909 11.73 0.00 46.79 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.