Multiple sequence alignment - TraesCS1B01G114600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G114600 chr1B 100.000 2887 0 0 1 2887 134418456 134415570 0.000000e+00 5332
1 TraesCS1B01G114600 chr1A 90.298 1711 80 27 445 2103 99341212 99339536 0.000000e+00 2161
2 TraesCS1B01G114600 chr1A 88.919 740 71 9 2151 2887 99339537 99338806 0.000000e+00 902
3 TraesCS1B01G114600 chr1A 93.818 275 15 2 180 454 99341658 99341386 2.070000e-111 412
4 TraesCS1B01G114600 chr1D 92.506 1321 58 9 484 1778 81152661 81151356 0.000000e+00 1853
5 TraesCS1B01G114600 chr1D 87.500 288 31 3 2605 2887 80973014 80972727 7.710000e-86 327
6 TraesCS1B01G114600 chr5D 83.554 754 102 13 1861 2601 9392196 9391452 0.000000e+00 686
7 TraesCS1B01G114600 chr4D 84.435 681 84 17 1929 2601 128909150 128909816 0.000000e+00 651
8 TraesCS1B01G114600 chr4D 81.225 751 103 20 1861 2596 343092305 343093032 3.230000e-159 571
9 TraesCS1B01G114600 chr2A 82.228 754 108 18 1861 2601 21147667 21146927 6.790000e-176 627
10 TraesCS1B01G114600 chr2A 80.669 269 28 11 2621 2884 701507799 701508048 1.370000e-43 187
11 TraesCS1B01G114600 chr2A 79.926 269 30 11 2621 2884 701505110 701505359 2.960000e-40 176
12 TraesCS1B01G114600 chr6B 81.526 747 119 13 1861 2601 638937134 638936401 5.320000e-167 597
13 TraesCS1B01G114600 chr6B 80.637 754 115 20 1862 2601 710143106 710142370 3.250000e-154 555
14 TraesCS1B01G114600 chr6B 94.118 187 11 0 1 187 636490825 636490639 4.710000e-73 285
15 TraesCS1B01G114600 chr5A 81.791 670 103 15 1911 2576 680207475 680206821 7.040000e-151 544
16 TraesCS1B01G114600 chr6D 81.081 703 111 11 1860 2549 3182791 3183484 2.530000e-150 542
17 TraesCS1B01G114600 chr2B 95.187 187 7 2 1 186 765569970 765570155 7.820000e-76 294
18 TraesCS1B01G114600 chr2B 95.506 178 8 0 2 179 377538821 377538998 4.710000e-73 285
19 TraesCS1B01G114600 chr2B 94.118 187 9 2 1 186 763446648 763446833 1.690000e-72 283
20 TraesCS1B01G114600 chr2B 93.229 192 9 3 1 190 36413920 36413731 2.190000e-71 279
21 TraesCS1B01G114600 chr5B 94.681 188 8 2 1 187 346616344 346616158 1.010000e-74 291
22 TraesCS1B01G114600 chr7B 94.149 188 9 2 1 187 18504734 18504548 4.710000e-73 285
23 TraesCS1B01G114600 chr4B 94.149 188 9 2 1 187 667396896 667396710 4.710000e-73 285
24 TraesCS1B01G114600 chr3B 93.194 191 11 2 1 190 784099893 784100082 2.190000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G114600 chr1B 134415570 134418456 2886 True 5332.000000 5332 100.000000 1 2887 1 chr1B.!!$R1 2886
1 TraesCS1B01G114600 chr1A 99338806 99341658 2852 True 1158.333333 2161 91.011667 180 2887 3 chr1A.!!$R1 2707
2 TraesCS1B01G114600 chr1D 81151356 81152661 1305 True 1853.000000 1853 92.506000 484 1778 1 chr1D.!!$R2 1294
3 TraesCS1B01G114600 chr5D 9391452 9392196 744 True 686.000000 686 83.554000 1861 2601 1 chr5D.!!$R1 740
4 TraesCS1B01G114600 chr4D 128909150 128909816 666 False 651.000000 651 84.435000 1929 2601 1 chr4D.!!$F1 672
5 TraesCS1B01G114600 chr4D 343092305 343093032 727 False 571.000000 571 81.225000 1861 2596 1 chr4D.!!$F2 735
6 TraesCS1B01G114600 chr2A 21146927 21147667 740 True 627.000000 627 82.228000 1861 2601 1 chr2A.!!$R1 740
7 TraesCS1B01G114600 chr6B 638936401 638937134 733 True 597.000000 597 81.526000 1861 2601 1 chr6B.!!$R2 740
8 TraesCS1B01G114600 chr6B 710142370 710143106 736 True 555.000000 555 80.637000 1862 2601 1 chr6B.!!$R3 739
9 TraesCS1B01G114600 chr5A 680206821 680207475 654 True 544.000000 544 81.791000 1911 2576 1 chr5A.!!$R1 665
10 TraesCS1B01G114600 chr6D 3182791 3183484 693 False 542.000000 542 81.081000 1860 2549 1 chr6D.!!$F1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 810 0.322322 ACTCTCGGACTCTCGTGTCT 59.678 55.0 0.0 0.0 37.16 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 2656 0.256464 ACGACGAGATCTCCTTCCCT 59.744 55.0 17.13 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
56 57 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
57 58 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
58 59 9.927081 AGATATAATTTGGTCTCATTCACCTTT 57.073 29.630 0.00 0.00 34.66 3.11
64 65 7.391148 TTTGGTCTCATTCACCTTTTATAGC 57.609 36.000 0.00 0.00 34.66 2.97
65 66 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
66 67 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
67 68 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
68 69 6.205658 GGTCTCATTCACCTTTTATAGCCATC 59.794 42.308 0.00 0.00 0.00 3.51
69 70 5.991606 TCTCATTCACCTTTTATAGCCATCG 59.008 40.000 0.00 0.00 0.00 3.84
70 71 5.063204 TCATTCACCTTTTATAGCCATCGG 58.937 41.667 0.00 0.00 0.00 4.18
71 72 4.764050 TTCACCTTTTATAGCCATCGGA 57.236 40.909 0.00 0.00 0.00 4.55
72 73 4.974645 TCACCTTTTATAGCCATCGGAT 57.025 40.909 0.00 0.00 0.00 4.18
73 74 4.641396 TCACCTTTTATAGCCATCGGATG 58.359 43.478 11.07 11.07 0.00 3.51
74 75 4.102524 TCACCTTTTATAGCCATCGGATGT 59.897 41.667 16.29 2.05 0.00 3.06
75 76 5.305902 TCACCTTTTATAGCCATCGGATGTA 59.694 40.000 16.29 4.24 0.00 2.29
76 77 5.995282 CACCTTTTATAGCCATCGGATGTAA 59.005 40.000 16.29 6.05 0.00 2.41
77 78 6.655003 CACCTTTTATAGCCATCGGATGTAAT 59.345 38.462 16.29 9.08 26.05 1.89
78 79 6.655003 ACCTTTTATAGCCATCGGATGTAATG 59.345 38.462 16.29 2.78 26.05 1.90
79 80 6.403636 CCTTTTATAGCCATCGGATGTAATGC 60.404 42.308 16.29 12.04 26.05 3.56
80 81 3.988976 ATAGCCATCGGATGTAATGCT 57.011 42.857 18.83 18.83 29.44 3.79
81 82 6.538945 TTATAGCCATCGGATGTAATGCTA 57.461 37.500 21.04 21.04 29.44 3.49
82 83 3.988976 AGCCATCGGATGTAATGCTAT 57.011 42.857 16.29 0.00 29.44 2.97
83 84 6.731292 ATAGCCATCGGATGTAATGCTATA 57.269 37.500 25.09 12.02 29.44 1.31
84 85 5.420725 AGCCATCGGATGTAATGCTATAA 57.579 39.130 16.29 0.00 29.44 0.98
85 86 5.423015 AGCCATCGGATGTAATGCTATAAG 58.577 41.667 16.29 0.00 29.44 1.73
86 87 5.187772 AGCCATCGGATGTAATGCTATAAGA 59.812 40.000 16.29 0.00 29.44 2.10
87 88 6.051717 GCCATCGGATGTAATGCTATAAGAT 58.948 40.000 16.29 0.00 29.44 2.40
88 89 6.018425 GCCATCGGATGTAATGCTATAAGATG 60.018 42.308 16.29 0.00 29.44 2.90
89 90 6.018425 CCATCGGATGTAATGCTATAAGATGC 60.018 42.308 16.29 0.00 32.80 3.91
90 91 5.102313 TCGGATGTAATGCTATAAGATGCG 58.898 41.667 0.00 0.00 29.44 4.73
91 92 4.864806 CGGATGTAATGCTATAAGATGCGT 59.135 41.667 0.00 0.00 29.44 5.24
92 93 6.033966 CGGATGTAATGCTATAAGATGCGTA 58.966 40.000 0.00 0.00 29.44 4.42
93 94 6.697455 CGGATGTAATGCTATAAGATGCGTAT 59.303 38.462 0.00 0.00 29.44 3.06
94 95 7.306225 CGGATGTAATGCTATAAGATGCGTATG 60.306 40.741 0.00 0.00 29.44 2.39
95 96 7.492669 GGATGTAATGCTATAAGATGCGTATGT 59.507 37.037 0.00 0.00 0.00 2.29
96 97 7.581011 TGTAATGCTATAAGATGCGTATGTG 57.419 36.000 0.00 0.00 0.00 3.21
97 98 5.536554 AATGCTATAAGATGCGTATGTGC 57.463 39.130 0.00 0.00 0.00 4.57
98 99 4.257267 TGCTATAAGATGCGTATGTGCT 57.743 40.909 0.00 0.00 35.36 4.40
99 100 3.989817 TGCTATAAGATGCGTATGTGCTG 59.010 43.478 0.00 0.00 35.36 4.41
100 101 4.237724 GCTATAAGATGCGTATGTGCTGA 58.762 43.478 0.00 0.00 35.36 4.26
101 102 4.090642 GCTATAAGATGCGTATGTGCTGAC 59.909 45.833 0.00 0.00 35.36 3.51
102 103 2.385013 AAGATGCGTATGTGCTGACA 57.615 45.000 0.00 0.00 36.22 3.58
103 104 2.609427 AGATGCGTATGTGCTGACAT 57.391 45.000 0.00 0.00 45.24 3.06
104 105 2.207590 AGATGCGTATGTGCTGACATG 58.792 47.619 0.00 0.00 43.03 3.21
105 106 1.262417 GATGCGTATGTGCTGACATGG 59.738 52.381 0.00 0.00 43.03 3.66
106 107 0.744057 TGCGTATGTGCTGACATGGG 60.744 55.000 0.00 0.00 43.03 4.00
107 108 0.744414 GCGTATGTGCTGACATGGGT 60.744 55.000 0.00 0.00 43.03 4.51
108 109 1.737838 CGTATGTGCTGACATGGGTT 58.262 50.000 0.00 0.00 43.03 4.11
109 110 1.398041 CGTATGTGCTGACATGGGTTG 59.602 52.381 0.00 0.00 43.03 3.77
110 111 2.436417 GTATGTGCTGACATGGGTTGT 58.564 47.619 0.00 0.00 43.03 3.32
111 112 2.877097 ATGTGCTGACATGGGTTGTA 57.123 45.000 0.00 0.00 41.52 2.41
112 113 2.877097 TGTGCTGACATGGGTTGTAT 57.123 45.000 0.00 0.00 39.18 2.29
113 114 2.710377 TGTGCTGACATGGGTTGTATC 58.290 47.619 0.00 0.00 39.18 2.24
114 115 2.305635 TGTGCTGACATGGGTTGTATCT 59.694 45.455 0.00 0.00 39.18 1.98
115 116 2.679837 GTGCTGACATGGGTTGTATCTG 59.320 50.000 0.00 0.00 39.18 2.90
116 117 2.305635 TGCTGACATGGGTTGTATCTGT 59.694 45.455 0.00 0.00 39.18 3.41
117 118 3.244875 TGCTGACATGGGTTGTATCTGTT 60.245 43.478 0.00 0.00 39.18 3.16
118 119 3.375299 GCTGACATGGGTTGTATCTGTTC 59.625 47.826 0.00 0.00 39.18 3.18
119 120 4.836825 CTGACATGGGTTGTATCTGTTCT 58.163 43.478 0.00 0.00 39.18 3.01
120 121 5.241403 TGACATGGGTTGTATCTGTTCTT 57.759 39.130 0.00 0.00 39.18 2.52
121 122 5.003160 TGACATGGGTTGTATCTGTTCTTG 58.997 41.667 0.00 0.00 39.18 3.02
122 123 4.985538 ACATGGGTTGTATCTGTTCTTGT 58.014 39.130 0.00 0.00 36.57 3.16
123 124 5.385198 ACATGGGTTGTATCTGTTCTTGTT 58.615 37.500 0.00 0.00 36.57 2.83
124 125 5.833131 ACATGGGTTGTATCTGTTCTTGTTT 59.167 36.000 0.00 0.00 36.57 2.83
125 126 6.323739 ACATGGGTTGTATCTGTTCTTGTTTT 59.676 34.615 0.00 0.00 36.57 2.43
126 127 6.385649 TGGGTTGTATCTGTTCTTGTTTTC 57.614 37.500 0.00 0.00 0.00 2.29
127 128 5.888724 TGGGTTGTATCTGTTCTTGTTTTCA 59.111 36.000 0.00 0.00 0.00 2.69
128 129 6.378564 TGGGTTGTATCTGTTCTTGTTTTCAA 59.621 34.615 0.00 0.00 38.21 2.69
129 130 7.093727 TGGGTTGTATCTGTTCTTGTTTTCAAA 60.094 33.333 0.00 0.00 39.47 2.69
130 131 7.435192 GGGTTGTATCTGTTCTTGTTTTCAAAG 59.565 37.037 0.00 0.00 39.47 2.77
131 132 7.973944 GGTTGTATCTGTTCTTGTTTTCAAAGT 59.026 33.333 0.00 0.00 39.47 2.66
132 133 8.798153 GTTGTATCTGTTCTTGTTTTCAAAGTG 58.202 33.333 0.00 0.00 39.47 3.16
133 134 8.275015 TGTATCTGTTCTTGTTTTCAAAGTGA 57.725 30.769 0.00 0.00 39.47 3.41
134 135 8.735315 TGTATCTGTTCTTGTTTTCAAAGTGAA 58.265 29.630 0.00 0.00 39.47 3.18
135 136 9.736023 GTATCTGTTCTTGTTTTCAAAGTGAAT 57.264 29.630 0.00 0.00 39.47 2.57
136 137 8.638685 ATCTGTTCTTGTTTTCAAAGTGAATG 57.361 30.769 0.00 0.00 39.47 2.67
137 138 7.825681 TCTGTTCTTGTTTTCAAAGTGAATGA 58.174 30.769 0.00 0.00 39.47 2.57
138 139 7.970061 TCTGTTCTTGTTTTCAAAGTGAATGAG 59.030 33.333 0.00 0.00 39.47 2.90
139 140 7.825681 TGTTCTTGTTTTCAAAGTGAATGAGA 58.174 30.769 0.00 0.00 39.47 3.27
140 141 7.754924 TGTTCTTGTTTTCAAAGTGAATGAGAC 59.245 33.333 0.00 0.00 39.47 3.36
141 142 6.795399 TCTTGTTTTCAAAGTGAATGAGACC 58.205 36.000 0.00 0.00 39.47 3.85
142 143 6.376864 TCTTGTTTTCAAAGTGAATGAGACCA 59.623 34.615 0.00 0.00 39.47 4.02
143 144 6.522625 TGTTTTCAAAGTGAATGAGACCAA 57.477 33.333 0.00 0.00 36.11 3.67
144 145 6.929625 TGTTTTCAAAGTGAATGAGACCAAA 58.070 32.000 0.00 0.00 36.11 3.28
145 146 7.555087 TGTTTTCAAAGTGAATGAGACCAAAT 58.445 30.769 0.00 0.00 36.11 2.32
146 147 8.040132 TGTTTTCAAAGTGAATGAGACCAAATT 58.960 29.630 0.00 0.00 36.11 1.82
147 148 9.528018 GTTTTCAAAGTGAATGAGACCAAATTA 57.472 29.630 0.00 0.00 36.11 1.40
177 178 8.856153 TCATCTAGATGAGTTCTATGTACTCC 57.144 38.462 27.93 0.00 42.42 3.85
178 179 7.885922 TCATCTAGATGAGTTCTATGTACTCCC 59.114 40.741 27.93 0.00 42.42 4.30
253 254 5.240844 GGTGTTCTGTTGCTATTGTAAAGGT 59.759 40.000 0.00 0.00 0.00 3.50
257 258 6.952773 TCTGTTGCTATTGTAAAGGTGTTT 57.047 33.333 0.00 0.00 0.00 2.83
260 261 8.904834 TCTGTTGCTATTGTAAAGGTGTTTAAA 58.095 29.630 0.00 0.00 29.74 1.52
262 263 8.688151 TGTTGCTATTGTAAAGGTGTTTAAACT 58.312 29.630 18.72 1.35 29.74 2.66
300 301 3.191371 GCTTATGTTCAACTTGGTCCTGG 59.809 47.826 0.00 0.00 0.00 4.45
314 315 6.598064 ACTTGGTCCTGGAAAATAAATAGACG 59.402 38.462 0.00 0.00 0.00 4.18
329 330 2.103537 AGACGTAAATGTTTCGGGGG 57.896 50.000 0.00 0.00 0.00 5.40
344 345 1.625315 CGGGGGCATCTATTCATCAGA 59.375 52.381 0.00 0.00 0.00 3.27
394 395 8.635124 GTCAATTGTGTTTTTACCATTACATCG 58.365 33.333 5.13 0.00 0.00 3.84
428 429 2.034879 CCCTCGCGATGCAGTGTTT 61.035 57.895 10.36 0.00 0.00 2.83
434 435 1.490621 GCGATGCAGTGTTTTGCTTT 58.509 45.000 0.00 0.00 44.38 3.51
437 438 2.722629 CGATGCAGTGTTTTGCTTTCTG 59.277 45.455 0.00 0.00 44.38 3.02
442 443 0.597377 GTGTTTTGCTTTCTGCCCGG 60.597 55.000 0.00 0.00 42.00 5.73
480 664 1.739667 CACACGCTATCGATCCCCA 59.260 57.895 0.00 0.00 39.41 4.96
495 679 3.118454 CCACGTGCCTAACCGCTG 61.118 66.667 10.91 0.00 0.00 5.18
504 688 0.965363 CCTAACCGCTGCCCATTGTT 60.965 55.000 0.00 0.00 0.00 2.83
621 805 1.157585 TGTCAACTCTCGGACTCTCG 58.842 55.000 0.00 0.00 35.11 4.04
626 810 0.322322 ACTCTCGGACTCTCGTGTCT 59.678 55.000 0.00 0.00 37.16 3.41
700 888 4.021807 TCGCCTCGGTGCTTCATATAAATA 60.022 41.667 0.00 0.00 0.00 1.40
703 891 5.932303 GCCTCGGTGCTTCATATAAATAGAA 59.068 40.000 0.00 0.00 0.00 2.10
709 897 6.128172 GGTGCTTCATATAAATAGAATGCGCT 60.128 38.462 9.73 0.00 32.17 5.92
736 924 1.110442 TTTTGAGGTGCCTGGTGTTG 58.890 50.000 0.00 0.00 0.00 3.33
756 944 5.409826 TGTTGAGCAAAACCGAAATGTTTTT 59.590 32.000 0.00 0.00 43.90 1.94
777 965 9.687717 GTTTTTACTTGTTGTGTGAAATCATTG 57.312 29.630 0.00 0.00 0.00 2.82
866 1055 7.493320 TCGAGTTGAATTATTACACGGCTAATT 59.507 33.333 0.00 0.00 0.00 1.40
895 1084 1.548357 AATCTCAGTCAGCTGCGGGT 61.548 55.000 9.47 0.00 42.29 5.28
899 1088 4.008933 AGTCAGCTGCGGGTGGTC 62.009 66.667 23.83 16.62 40.89 4.02
1253 1459 2.631012 GATACCTGGGGCCTGGCAAG 62.631 65.000 22.05 14.00 38.41 4.01
1389 1595 1.068333 GTGAAGGCGTACGACAAGGTA 60.068 52.381 25.52 1.35 0.00 3.08
1467 1673 2.279120 GAGGAGATGGCGAGCGTG 60.279 66.667 0.00 0.00 0.00 5.34
1647 1853 2.683968 TCTTCGCGTGTGATAAAGCTT 58.316 42.857 5.77 0.00 0.00 3.74
1669 1875 8.852135 AGCTTCAATAGTGTATAGTCTAGAACC 58.148 37.037 0.00 0.00 0.00 3.62
1693 1899 5.476945 CCTTTCTCTATTCTCCTCTCCTAGC 59.523 48.000 0.00 0.00 0.00 3.42
1747 1957 3.574614 GCAATTCGTGTGCTTGGTTAAT 58.425 40.909 1.38 0.00 39.00 1.40
1760 1971 5.357032 TGCTTGGTTAATTTAGAGCCTTAGC 59.643 40.000 0.00 0.00 40.32 3.09
1943 2194 6.112994 TGATCGCAGCGATTACAAAATAAA 57.887 33.333 30.30 0.00 47.00 1.40
1978 2230 6.740411 AGAGCAAATCTTTGAGATCTTCAC 57.260 37.500 6.84 0.00 40.55 3.18
1980 2232 6.885376 AGAGCAAATCTTTGAGATCTTCACAT 59.115 34.615 6.84 0.00 40.55 3.21
2024 2277 6.716628 ACAATCTTGTATTTTCTGAAGGCAGA 59.283 34.615 0.00 0.00 43.65 4.26
2094 2347 5.860941 TGAGGGTTCTCTCATAGCTTTAG 57.139 43.478 0.00 0.00 38.70 1.85
2135 2388 4.394078 CAATGCACGCACGCAGCT 62.394 61.111 3.23 0.00 46.99 4.24
2154 2408 8.413229 ACGCAGCTATTAAAATAATCAACCAAT 58.587 29.630 0.00 0.00 0.00 3.16
2225 2481 4.147449 CGATGTCGCTGGGAGCCA 62.147 66.667 0.00 0.00 38.18 4.75
2239 2495 2.103263 GGGAGCCAAGAGTACGAATCAT 59.897 50.000 0.00 0.00 0.00 2.45
2282 2538 2.099098 CGGGACAAATATTGCAAGGACC 59.901 50.000 4.94 1.99 0.00 4.46
2387 2648 6.644592 ACAAATTTAATGTTCCAACACCATCG 59.355 34.615 0.00 0.00 42.51 3.84
2419 2680 1.384525 AGGAGATCTCGTCGTGGAAG 58.615 55.000 16.46 0.00 0.00 3.46
2498 2760 5.646360 CGACTACCAACATCCTAAACCAATT 59.354 40.000 0.00 0.00 0.00 2.32
2550 2812 3.206150 CACTCATAAATCGGGTTCCCTG 58.794 50.000 6.31 0.41 0.00 4.45
2552 2814 1.843851 TCATAAATCGGGTTCCCTGCT 59.156 47.619 6.31 0.00 0.00 4.24
2554 2816 2.994186 TAAATCGGGTTCCCTGCTAC 57.006 50.000 6.31 0.00 0.00 3.58
2555 2817 0.255033 AAATCGGGTTCCCTGCTACC 59.745 55.000 6.31 0.00 0.00 3.18
2556 2818 0.912487 AATCGGGTTCCCTGCTACCA 60.912 55.000 6.31 0.00 36.10 3.25
2557 2819 1.623542 ATCGGGTTCCCTGCTACCAC 61.624 60.000 6.31 0.00 36.10 4.16
2619 2882 4.559862 TCTTCTTCCCTGATGAAGGTTC 57.440 45.455 15.52 0.00 45.78 3.62
2620 2883 4.171234 TCTTCTTCCCTGATGAAGGTTCT 58.829 43.478 15.52 0.00 45.78 3.01
2622 2885 3.520696 TCTTCCCTGATGAAGGTTCTCA 58.479 45.455 0.00 0.00 45.78 3.27
2634 2898 4.571984 TGAAGGTTCTCATGTTCATATGCG 59.428 41.667 0.00 0.00 0.00 4.73
2640 2904 3.072211 CTCATGTTCATATGCGAGCCAT 58.928 45.455 0.00 0.00 37.97 4.40
2665 2929 2.034879 CCGCGCAGTGTCAAAGGAT 61.035 57.895 8.75 0.00 35.45 3.24
2685 2949 1.447489 CTTCAGCAGAGGCCAGACG 60.447 63.158 5.01 0.00 42.56 4.18
2713 2977 3.617045 GCAGCATAGCTTCCTCCTAGATG 60.617 52.174 0.00 0.00 36.40 2.90
2714 2978 3.055963 CAGCATAGCTTCCTCCTAGATGG 60.056 52.174 0.00 0.00 36.40 3.51
2738 3002 1.065199 CAAGCAGGGCATCCAAGTCTA 60.065 52.381 0.00 0.00 34.83 2.59
2742 3006 1.142465 CAGGGCATCCAAGTCTATGCT 59.858 52.381 7.18 0.00 46.16 3.79
2767 3031 2.690778 GGCACGCATCTCCCAACAC 61.691 63.158 0.00 0.00 0.00 3.32
2772 3036 1.303561 GCATCTCCCAACACCTGCA 60.304 57.895 0.00 0.00 0.00 4.41
2776 3040 3.099841 TCCCAACACCTGCACCCA 61.100 61.111 0.00 0.00 0.00 4.51
2792 3056 2.093973 CACCCAGCTACATCTCTTCGTT 60.094 50.000 0.00 0.00 0.00 3.85
2804 3068 4.491234 TCTCTTCGTTCTCTCACACTTC 57.509 45.455 0.00 0.00 0.00 3.01
2807 3071 4.799678 TCTTCGTTCTCTCACACTTCATC 58.200 43.478 0.00 0.00 0.00 2.92
2824 3088 2.766263 TCATCTCCTACATGCCTTCGTT 59.234 45.455 0.00 0.00 0.00 3.85
2827 3091 2.832129 TCTCCTACATGCCTTCGTTCTT 59.168 45.455 0.00 0.00 0.00 2.52
2828 3092 3.260884 TCTCCTACATGCCTTCGTTCTTT 59.739 43.478 0.00 0.00 0.00 2.52
2831 3095 3.619038 CCTACATGCCTTCGTTCTTTCTC 59.381 47.826 0.00 0.00 0.00 2.87
2832 3096 3.409026 ACATGCCTTCGTTCTTTCTCT 57.591 42.857 0.00 0.00 0.00 3.10
2854 3118 3.877559 ACATCACACGAACATCCATCAT 58.122 40.909 0.00 0.00 0.00 2.45
2865 3129 1.139654 CATCCATCATCCGACCACACT 59.860 52.381 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.960113 TGAGTTCTAGCAAAACTGCAAAAA 58.040 33.333 0.32 0.00 37.10 1.94
3 4 5.065914 AGATGAGTTCTAGCAAAACTGCAA 58.934 37.500 0.32 0.00 37.10 4.08
4 5 4.645535 AGATGAGTTCTAGCAAAACTGCA 58.354 39.130 0.32 0.00 37.10 4.41
5 6 6.343226 CTAGATGAGTTCTAGCAAAACTGC 57.657 41.667 0.32 0.00 45.63 4.40
31 32 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
32 33 9.927081 AAAGGTGAATGAGACCAAATTATATCT 57.073 29.630 0.00 0.00 35.76 1.98
38 39 8.470002 GCTATAAAAGGTGAATGAGACCAAATT 58.530 33.333 0.00 0.00 35.76 1.82
39 40 7.068716 GGCTATAAAAGGTGAATGAGACCAAAT 59.931 37.037 0.00 0.00 35.76 2.32
40 41 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
41 42 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
42 43 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
43 44 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
44 45 6.073548 CGATGGCTATAAAAGGTGAATGAGAC 60.074 42.308 0.00 0.00 0.00 3.36
45 46 5.991606 CGATGGCTATAAAAGGTGAATGAGA 59.008 40.000 0.00 0.00 0.00 3.27
46 47 5.180117 CCGATGGCTATAAAAGGTGAATGAG 59.820 44.000 0.00 0.00 0.00 2.90
47 48 5.063204 CCGATGGCTATAAAAGGTGAATGA 58.937 41.667 0.00 0.00 0.00 2.57
48 49 5.063204 TCCGATGGCTATAAAAGGTGAATG 58.937 41.667 0.00 0.00 0.00 2.67
49 50 5.304686 TCCGATGGCTATAAAAGGTGAAT 57.695 39.130 0.00 0.00 0.00 2.57
50 51 4.764050 TCCGATGGCTATAAAAGGTGAA 57.236 40.909 0.00 0.00 0.00 3.18
51 52 4.102524 ACATCCGATGGCTATAAAAGGTGA 59.897 41.667 13.00 0.00 33.60 4.02
52 53 4.389374 ACATCCGATGGCTATAAAAGGTG 58.611 43.478 13.00 0.00 33.60 4.00
53 54 4.706842 ACATCCGATGGCTATAAAAGGT 57.293 40.909 13.00 0.00 33.60 3.50
54 55 6.403636 GCATTACATCCGATGGCTATAAAAGG 60.404 42.308 13.00 0.00 33.60 3.11
55 56 6.372659 AGCATTACATCCGATGGCTATAAAAG 59.627 38.462 13.00 2.10 33.60 2.27
56 57 6.237901 AGCATTACATCCGATGGCTATAAAA 58.762 36.000 13.00 0.00 33.60 1.52
57 58 5.804639 AGCATTACATCCGATGGCTATAAA 58.195 37.500 13.00 0.00 33.60 1.40
58 59 5.420725 AGCATTACATCCGATGGCTATAA 57.579 39.130 13.00 2.99 33.60 0.98
59 60 6.731292 ATAGCATTACATCCGATGGCTATA 57.269 37.500 19.92 5.62 33.60 1.31
60 61 3.988976 AGCATTACATCCGATGGCTAT 57.011 42.857 13.00 0.65 33.60 2.97
61 62 6.379988 TCTTATAGCATTACATCCGATGGCTA 59.620 38.462 13.00 14.33 33.60 3.93
62 63 3.988976 ATAGCATTACATCCGATGGCT 57.011 42.857 13.00 12.78 33.60 4.75
63 64 5.419542 TCTTATAGCATTACATCCGATGGC 58.580 41.667 13.00 6.32 33.60 4.40
64 65 6.018425 GCATCTTATAGCATTACATCCGATGG 60.018 42.308 13.00 0.00 33.60 3.51
65 66 6.292008 CGCATCTTATAGCATTACATCCGATG 60.292 42.308 6.84 6.84 0.00 3.84
66 67 5.750547 CGCATCTTATAGCATTACATCCGAT 59.249 40.000 0.00 0.00 0.00 4.18
67 68 5.102313 CGCATCTTATAGCATTACATCCGA 58.898 41.667 0.00 0.00 0.00 4.55
68 69 4.864806 ACGCATCTTATAGCATTACATCCG 59.135 41.667 0.00 0.00 0.00 4.18
69 70 7.492669 ACATACGCATCTTATAGCATTACATCC 59.507 37.037 0.00 0.00 0.00 3.51
70 71 8.323854 CACATACGCATCTTATAGCATTACATC 58.676 37.037 0.00 0.00 0.00 3.06
71 72 7.201556 GCACATACGCATCTTATAGCATTACAT 60.202 37.037 0.00 0.00 0.00 2.29
72 73 6.090763 GCACATACGCATCTTATAGCATTACA 59.909 38.462 0.00 0.00 0.00 2.41
73 74 6.311445 AGCACATACGCATCTTATAGCATTAC 59.689 38.462 0.00 0.00 0.00 1.89
74 75 6.311200 CAGCACATACGCATCTTATAGCATTA 59.689 38.462 0.00 0.00 0.00 1.90
75 76 5.121298 CAGCACATACGCATCTTATAGCATT 59.879 40.000 0.00 0.00 0.00 3.56
76 77 4.628766 CAGCACATACGCATCTTATAGCAT 59.371 41.667 0.00 0.00 0.00 3.79
77 78 3.989817 CAGCACATACGCATCTTATAGCA 59.010 43.478 0.00 0.00 0.00 3.49
78 79 4.090642 GTCAGCACATACGCATCTTATAGC 59.909 45.833 0.00 0.00 0.00 2.97
79 80 5.222631 TGTCAGCACATACGCATCTTATAG 58.777 41.667 0.00 0.00 0.00 1.31
80 81 5.195001 TGTCAGCACATACGCATCTTATA 57.805 39.130 0.00 0.00 0.00 0.98
81 82 4.058721 TGTCAGCACATACGCATCTTAT 57.941 40.909 0.00 0.00 0.00 1.73
82 83 3.518634 TGTCAGCACATACGCATCTTA 57.481 42.857 0.00 0.00 0.00 2.10
83 84 2.385013 TGTCAGCACATACGCATCTT 57.615 45.000 0.00 0.00 0.00 2.40
84 85 2.207590 CATGTCAGCACATACGCATCT 58.792 47.619 0.00 0.00 41.69 2.90
85 86 1.262417 CCATGTCAGCACATACGCATC 59.738 52.381 0.00 0.00 41.69 3.91
86 87 1.302366 CCATGTCAGCACATACGCAT 58.698 50.000 0.00 0.00 41.69 4.73
87 88 0.744057 CCCATGTCAGCACATACGCA 60.744 55.000 0.00 0.00 41.69 5.24
88 89 0.744414 ACCCATGTCAGCACATACGC 60.744 55.000 0.00 0.00 41.69 4.42
89 90 1.398041 CAACCCATGTCAGCACATACG 59.602 52.381 0.00 0.00 41.69 3.06
90 91 2.436417 ACAACCCATGTCAGCACATAC 58.564 47.619 0.00 0.00 41.69 2.39
91 92 2.877097 ACAACCCATGTCAGCACATA 57.123 45.000 0.00 0.00 41.69 2.29
92 93 2.877097 TACAACCCATGTCAGCACAT 57.123 45.000 0.00 0.00 44.72 3.21
93 94 2.305635 AGATACAACCCATGTCAGCACA 59.694 45.455 0.00 0.00 42.70 4.57
94 95 2.679837 CAGATACAACCCATGTCAGCAC 59.320 50.000 0.00 0.00 42.70 4.40
95 96 2.305635 ACAGATACAACCCATGTCAGCA 59.694 45.455 0.00 0.00 42.70 4.41
96 97 2.991250 ACAGATACAACCCATGTCAGC 58.009 47.619 0.00 0.00 42.70 4.26
97 98 4.836825 AGAACAGATACAACCCATGTCAG 58.163 43.478 0.00 0.00 42.70 3.51
98 99 4.908601 AGAACAGATACAACCCATGTCA 57.091 40.909 0.00 0.00 42.70 3.58
99 100 5.003804 ACAAGAACAGATACAACCCATGTC 58.996 41.667 0.00 0.00 42.70 3.06
100 101 4.985538 ACAAGAACAGATACAACCCATGT 58.014 39.130 0.00 0.00 46.36 3.21
101 102 5.964958 AACAAGAACAGATACAACCCATG 57.035 39.130 0.00 0.00 0.00 3.66
102 103 6.549364 TGAAAACAAGAACAGATACAACCCAT 59.451 34.615 0.00 0.00 0.00 4.00
103 104 5.888724 TGAAAACAAGAACAGATACAACCCA 59.111 36.000 0.00 0.00 0.00 4.51
104 105 6.385649 TGAAAACAAGAACAGATACAACCC 57.614 37.500 0.00 0.00 0.00 4.11
105 106 7.973944 ACTTTGAAAACAAGAACAGATACAACC 59.026 33.333 0.00 0.00 0.00 3.77
106 107 8.798153 CACTTTGAAAACAAGAACAGATACAAC 58.202 33.333 0.00 0.00 0.00 3.32
107 108 8.735315 TCACTTTGAAAACAAGAACAGATACAA 58.265 29.630 0.00 0.00 0.00 2.41
108 109 8.275015 TCACTTTGAAAACAAGAACAGATACA 57.725 30.769 0.00 0.00 0.00 2.29
109 110 9.736023 ATTCACTTTGAAAACAAGAACAGATAC 57.264 29.630 0.00 0.00 40.12 2.24
110 111 9.734620 CATTCACTTTGAAAACAAGAACAGATA 57.265 29.630 0.00 0.00 40.12 1.98
111 112 8.469200 TCATTCACTTTGAAAACAAGAACAGAT 58.531 29.630 0.00 0.00 40.12 2.90
112 113 7.825681 TCATTCACTTTGAAAACAAGAACAGA 58.174 30.769 0.00 0.00 40.12 3.41
113 114 7.970061 TCTCATTCACTTTGAAAACAAGAACAG 59.030 33.333 0.00 0.00 40.12 3.16
114 115 7.754924 GTCTCATTCACTTTGAAAACAAGAACA 59.245 33.333 0.00 0.00 40.12 3.18
115 116 7.220875 GGTCTCATTCACTTTGAAAACAAGAAC 59.779 37.037 0.00 0.00 40.12 3.01
116 117 7.093988 TGGTCTCATTCACTTTGAAAACAAGAA 60.094 33.333 0.00 0.00 40.12 2.52
117 118 6.376864 TGGTCTCATTCACTTTGAAAACAAGA 59.623 34.615 0.00 0.00 40.12 3.02
118 119 6.563422 TGGTCTCATTCACTTTGAAAACAAG 58.437 36.000 0.00 0.00 40.12 3.16
119 120 6.522625 TGGTCTCATTCACTTTGAAAACAA 57.477 33.333 0.00 0.00 40.12 2.83
120 121 6.522625 TTGGTCTCATTCACTTTGAAAACA 57.477 33.333 0.00 0.00 40.12 2.83
121 122 8.424274 AATTTGGTCTCATTCACTTTGAAAAC 57.576 30.769 0.00 0.00 40.12 2.43
151 152 9.290988 GGAGTACATAGAACTCATCTAGATGAA 57.709 37.037 30.28 18.77 46.10 2.57
152 153 7.885922 GGGAGTACATAGAACTCATCTAGATGA 59.114 40.741 29.17 29.17 43.75 2.92
153 154 7.122055 GGGGAGTACATAGAACTCATCTAGATG 59.878 44.444 24.32 24.32 43.75 2.90
154 155 7.019153 AGGGGAGTACATAGAACTCATCTAGAT 59.981 40.741 0.00 0.00 43.75 1.98
155 156 6.333168 AGGGGAGTACATAGAACTCATCTAGA 59.667 42.308 0.00 0.00 43.75 2.43
156 157 6.548321 AGGGGAGTACATAGAACTCATCTAG 58.452 44.000 5.67 0.00 43.75 2.43
157 158 6.532119 AGGGGAGTACATAGAACTCATCTA 57.468 41.667 5.67 0.00 44.25 1.98
158 159 5.411103 AGGGGAGTACATAGAACTCATCT 57.589 43.478 5.67 0.09 44.25 2.90
159 160 6.487299 AAAGGGGAGTACATAGAACTCATC 57.513 41.667 5.67 0.00 44.25 2.92
160 161 6.893020 AAAAGGGGAGTACATAGAACTCAT 57.107 37.500 5.67 0.00 44.25 2.90
161 162 6.697641 AAAAAGGGGAGTACATAGAACTCA 57.302 37.500 5.67 0.00 44.25 3.41
269 270 6.462909 CCAAGTTGAACATAAGCCTCCTTTTT 60.463 38.462 3.87 0.00 32.47 1.94
282 283 3.593442 TTCCAGGACCAAGTTGAACAT 57.407 42.857 3.87 0.00 0.00 2.71
314 315 2.375146 AGATGCCCCCGAAACATTTAC 58.625 47.619 0.00 0.00 0.00 2.01
329 330 7.389884 TCTTTTAGCCATCTGATGAATAGATGC 59.610 37.037 18.92 11.23 46.42 3.91
344 345 8.422577 ACTGGAACTTAAATTCTTTTAGCCAT 57.577 30.769 0.00 0.00 0.00 4.40
434 435 1.546589 AAACGTATGTCCCGGGCAGA 61.547 55.000 18.49 12.21 0.00 4.26
437 438 0.956902 ACAAAACGTATGTCCCGGGC 60.957 55.000 18.49 12.24 0.00 6.13
442 443 4.273969 TGTGGAGAAACAAAACGTATGTCC 59.726 41.667 7.30 5.45 0.00 4.02
700 888 6.095377 CCTCAAAATTTCTTAAGCGCATTCT 58.905 36.000 11.47 0.00 0.00 2.40
703 891 5.163513 CACCTCAAAATTTCTTAAGCGCAT 58.836 37.500 11.47 0.00 0.00 4.73
709 897 4.898861 ACCAGGCACCTCAAAATTTCTTAA 59.101 37.500 0.00 0.00 0.00 1.85
736 924 6.822073 AGTAAAAACATTTCGGTTTTGCTC 57.178 33.333 4.96 0.68 46.99 4.26
756 944 6.141560 TGCAATGATTTCACACAACAAGTA 57.858 33.333 0.00 0.00 0.00 2.24
777 965 7.814587 ACAAAATAGCATTAGTCTTTTCCTTGC 59.185 33.333 0.00 0.00 0.00 4.01
866 1055 1.704628 TGACTGAGATTTGGGCTTGGA 59.295 47.619 0.00 0.00 0.00 3.53
895 1084 1.416243 AGTGTCCGGTTTAGTGACCA 58.584 50.000 0.00 0.00 39.78 4.02
899 1088 3.790789 GCAAACAAGTGTCCGGTTTAGTG 60.791 47.826 0.00 0.00 33.72 2.74
1239 1445 4.748144 GTCCTTGCCAGGCCCCAG 62.748 72.222 9.64 1.89 40.58 4.45
1326 1532 0.322906 CCTTCTTGTCCTTGGGCTCC 60.323 60.000 0.00 0.00 0.00 4.70
1500 1706 3.319198 GGGAGCCCGACCTTGACA 61.319 66.667 0.00 0.00 0.00 3.58
1647 1853 9.710818 AAAGGGTTCTAGACTATACACTATTGA 57.289 33.333 0.00 0.00 0.00 2.57
1669 1875 5.476945 GCTAGGAGAGGAGAATAGAGAAAGG 59.523 48.000 0.00 0.00 0.00 3.11
1747 1957 4.844349 ATTGACAGGCTAAGGCTCTAAA 57.156 40.909 0.00 0.00 35.88 1.85
1760 1971 5.772825 TTGAAGAGTGGAAAATTGACAGG 57.227 39.130 0.00 0.00 0.00 4.00
1839 2080 6.610075 AAATGCAGTTTAGGATGATTTGGT 57.390 33.333 0.00 0.00 0.00 3.67
1840 2081 7.910441 AAAAATGCAGTTTAGGATGATTTGG 57.090 32.000 13.16 0.00 0.00 3.28
1978 2230 9.125906 GATTGTGTCATGAAAGAAGAAAGAATG 57.874 33.333 0.00 0.00 0.00 2.67
1980 2232 8.455903 AGATTGTGTCATGAAAGAAGAAAGAA 57.544 30.769 0.00 0.00 0.00 2.52
2094 2347 1.006337 TTGGCATTGCGGCTCAAAC 60.006 52.632 0.00 0.00 41.89 2.93
2135 2388 8.687242 TGCCGACATTGGTTGATTATTTTAATA 58.313 29.630 0.00 0.00 0.00 0.98
2154 2408 0.753867 TGTTGGTACTCTTGCCGACA 59.246 50.000 0.00 0.00 46.68 4.35
2225 2481 5.891451 TCGACAATGATGATTCGTACTCTT 58.109 37.500 0.00 0.00 0.00 2.85
2239 2495 1.132453 CTGCTACGTCCTCGACAATGA 59.868 52.381 0.00 0.00 40.62 2.57
2282 2538 0.692476 TGGTCACCACAAGGAGGATG 59.308 55.000 0.00 0.00 38.69 3.51
2316 2574 4.701651 TGCTTCACGAGATTGATTTTGGAT 59.298 37.500 0.00 0.00 0.00 3.41
2331 2592 2.670414 GTCCTTCAGATCTTGCTTCACG 59.330 50.000 0.00 0.00 0.00 4.35
2387 2648 4.202070 CGAGATCTCCTTCCCTAAGTCAAC 60.202 50.000 17.13 0.00 0.00 3.18
2395 2656 0.256464 ACGACGAGATCTCCTTCCCT 59.744 55.000 17.13 0.00 0.00 4.20
2419 2680 9.857957 CTATAATAAGTAATCTTCGTCCCTTCC 57.142 37.037 0.00 0.00 35.36 3.46
2550 2812 4.509737 GGCGTCGGAGGTGGTAGC 62.510 72.222 0.00 0.00 0.00 3.58
2552 2814 3.066190 CTGGCGTCGGAGGTGGTA 61.066 66.667 0.00 0.00 0.00 3.25
2619 2882 2.486918 TGGCTCGCATATGAACATGAG 58.513 47.619 6.97 6.02 0.00 2.90
2620 2883 2.618442 TGGCTCGCATATGAACATGA 57.382 45.000 6.97 0.00 0.00 3.07
2622 2885 2.039480 AGGATGGCTCGCATATGAACAT 59.961 45.455 6.97 2.57 0.00 2.71
2649 2913 1.726853 AGTATCCTTTGACACTGCGC 58.273 50.000 0.00 0.00 0.00 6.09
2650 2914 3.325870 TGAAGTATCCTTTGACACTGCG 58.674 45.455 0.00 0.00 0.00 5.18
2665 2929 0.898320 GTCTGGCCTCTGCTGAAGTA 59.102 55.000 3.32 0.00 37.74 2.24
2670 2934 2.433838 CACGTCTGGCCTCTGCTG 60.434 66.667 3.32 0.00 37.74 4.41
2671 2935 4.385405 GCACGTCTGGCCTCTGCT 62.385 66.667 3.32 0.00 37.74 4.24
2674 2938 4.363990 CGTGCACGTCTGGCCTCT 62.364 66.667 30.50 0.00 34.11 3.69
2754 3018 1.303561 TGCAGGTGTTGGGAGATGC 60.304 57.895 0.00 0.00 0.00 3.91
2767 3031 0.179062 GAGATGTAGCTGGGTGCAGG 60.179 60.000 0.00 0.00 45.94 4.85
2772 3036 1.853963 ACGAAGAGATGTAGCTGGGT 58.146 50.000 0.00 0.00 0.00 4.51
2776 3040 4.095782 GTGAGAGAACGAAGAGATGTAGCT 59.904 45.833 0.00 0.00 0.00 3.32
2792 3056 4.923415 TGTAGGAGATGAAGTGTGAGAGA 58.077 43.478 0.00 0.00 0.00 3.10
2804 3068 2.898729 ACGAAGGCATGTAGGAGATG 57.101 50.000 0.00 0.00 0.00 2.90
2807 3071 2.969628 AGAACGAAGGCATGTAGGAG 57.030 50.000 0.00 0.00 0.00 3.69
2824 3088 5.447624 TGTTCGTGTGATGTAGAGAAAGA 57.552 39.130 0.00 0.00 0.00 2.52
2827 3091 4.219725 TGGATGTTCGTGTGATGTAGAGAA 59.780 41.667 0.00 0.00 0.00 2.87
2828 3092 3.761752 TGGATGTTCGTGTGATGTAGAGA 59.238 43.478 0.00 0.00 0.00 3.10
2831 3095 4.432712 TGATGGATGTTCGTGTGATGTAG 58.567 43.478 0.00 0.00 0.00 2.74
2832 3096 4.464069 TGATGGATGTTCGTGTGATGTA 57.536 40.909 0.00 0.00 0.00 2.29
2854 3118 1.066215 CATGGATTCAGTGTGGTCGGA 60.066 52.381 0.00 0.00 0.00 4.55
2865 3129 3.309296 GGAGTCTAGGGTCATGGATTCA 58.691 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.