Multiple sequence alignment - TraesCS1B01G114400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G114400 chr1B 100.000 2758 0 0 1 2758 133480500 133483257 0.000000e+00 5094
1 TraesCS1B01G114400 chr1B 80.365 876 130 26 910 1758 133075582 133076442 6.480000e-176 627
2 TraesCS1B01G114400 chr1B 81.901 768 114 19 999 1756 133032490 133033242 2.330000e-175 625
3 TraesCS1B01G114400 chr1B 81.548 775 120 19 1000 1759 132938250 132939016 3.900000e-173 617
4 TraesCS1B01G114400 chr1D 93.429 1111 65 6 824 1929 80816842 80817949 0.000000e+00 1640
5 TraesCS1B01G114400 chr1D 92.467 823 55 7 1938 2756 318104510 318105329 0.000000e+00 1170
6 TraesCS1B01G114400 chr1D 81.995 772 118 15 999 1758 80540993 80541755 1.080000e-178 636
7 TraesCS1B01G114400 chr1D 81.937 764 118 15 1000 1759 80448324 80449071 1.800000e-176 628
8 TraesCS1B01G114400 chr1D 85.417 480 63 5 1279 1756 80537403 80537877 2.470000e-135 492
9 TraesCS1B01G114400 chr1A 89.374 1007 82 12 783 1785 99234204 99235189 0.000000e+00 1243
10 TraesCS1B01G114400 chr1A 81.759 762 121 16 1001 1759 99018629 99019375 3.020000e-174 621
11 TraesCS1B01G114400 chr1A 81.606 772 117 19 1003 1758 99071116 99071878 1.400000e-172 616
12 TraesCS1B01G114400 chr1A 81.144 769 117 17 1001 1756 99048776 99049529 2.370000e-165 592
13 TraesCS1B01G114400 chr1A 80.917 545 63 23 143 678 99232837 99233349 2.570000e-105 392
14 TraesCS1B01G114400 chr7D 93.349 827 46 4 1938 2756 145920048 145919223 0.000000e+00 1214
15 TraesCS1B01G114400 chr7D 93.309 822 51 4 1938 2756 576645031 576644211 0.000000e+00 1210
16 TraesCS1B01G114400 chr7D 92.354 824 55 6 1938 2756 616465905 616465085 0.000000e+00 1166
17 TraesCS1B01G114400 chr2D 93.204 824 49 5 1938 2756 285349014 285349835 0.000000e+00 1205
18 TraesCS1B01G114400 chr2D 93.171 820 48 5 1944 2756 276936742 276935924 0.000000e+00 1197
19 TraesCS1B01G114400 chr5A 92.588 823 55 6 1938 2756 598827520 598826700 0.000000e+00 1177
20 TraesCS1B01G114400 chr3A 92.345 823 56 5 1938 2756 686844115 686844934 0.000000e+00 1164
21 TraesCS1B01G114400 chr5D 92.233 824 57 6 1938 2756 324410470 324409649 0.000000e+00 1160
22 TraesCS1B01G114400 chr7B 86.052 803 97 8 970 1759 95337241 95338041 0.000000e+00 848


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G114400 chr1B 133480500 133483257 2757 False 5094.0 5094 100.0000 1 2758 1 chr1B.!!$F4 2757
1 TraesCS1B01G114400 chr1B 133075582 133076442 860 False 627.0 627 80.3650 910 1758 1 chr1B.!!$F3 848
2 TraesCS1B01G114400 chr1B 133032490 133033242 752 False 625.0 625 81.9010 999 1756 1 chr1B.!!$F2 757
3 TraesCS1B01G114400 chr1B 132938250 132939016 766 False 617.0 617 81.5480 1000 1759 1 chr1B.!!$F1 759
4 TraesCS1B01G114400 chr1D 80816842 80817949 1107 False 1640.0 1640 93.4290 824 1929 1 chr1D.!!$F2 1105
5 TraesCS1B01G114400 chr1D 318104510 318105329 819 False 1170.0 1170 92.4670 1938 2756 1 chr1D.!!$F3 818
6 TraesCS1B01G114400 chr1D 80448324 80449071 747 False 628.0 628 81.9370 1000 1759 1 chr1D.!!$F1 759
7 TraesCS1B01G114400 chr1D 80537403 80541755 4352 False 564.0 636 83.7060 999 1758 2 chr1D.!!$F4 759
8 TraesCS1B01G114400 chr1A 99232837 99235189 2352 False 817.5 1243 85.1455 143 1785 2 chr1A.!!$F4 1642
9 TraesCS1B01G114400 chr1A 99018629 99019375 746 False 621.0 621 81.7590 1001 1759 1 chr1A.!!$F1 758
10 TraesCS1B01G114400 chr1A 99071116 99071878 762 False 616.0 616 81.6060 1003 1758 1 chr1A.!!$F3 755
11 TraesCS1B01G114400 chr1A 99048776 99049529 753 False 592.0 592 81.1440 1001 1756 1 chr1A.!!$F2 755
12 TraesCS1B01G114400 chr7D 145919223 145920048 825 True 1214.0 1214 93.3490 1938 2756 1 chr7D.!!$R1 818
13 TraesCS1B01G114400 chr7D 576644211 576645031 820 True 1210.0 1210 93.3090 1938 2756 1 chr7D.!!$R2 818
14 TraesCS1B01G114400 chr7D 616465085 616465905 820 True 1166.0 1166 92.3540 1938 2756 1 chr7D.!!$R3 818
15 TraesCS1B01G114400 chr2D 285349014 285349835 821 False 1205.0 1205 93.2040 1938 2756 1 chr2D.!!$F1 818
16 TraesCS1B01G114400 chr2D 276935924 276936742 818 True 1197.0 1197 93.1710 1944 2756 1 chr2D.!!$R1 812
17 TraesCS1B01G114400 chr5A 598826700 598827520 820 True 1177.0 1177 92.5880 1938 2756 1 chr5A.!!$R1 818
18 TraesCS1B01G114400 chr3A 686844115 686844934 819 False 1164.0 1164 92.3450 1938 2756 1 chr3A.!!$F1 818
19 TraesCS1B01G114400 chr5D 324409649 324410470 821 True 1160.0 1160 92.2330 1938 2756 1 chr5D.!!$R1 818
20 TraesCS1B01G114400 chr7B 95337241 95338041 800 False 848.0 848 86.0520 970 1759 1 chr7B.!!$F1 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 1578 0.385473 CGACCATTTGGCGTGTCAAC 60.385 55.0 0.0 0.0 39.32 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 4597 0.319083 TGGCAGTTATCGTTGTCCGT 59.681 50.0 0.0 0.0 37.94 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.981088 ATGCATTTACATTGACCACTTGA 57.019 34.783 0.00 0.00 0.00 3.02
24 25 5.119931 TGCATTTACATTGACCACTTGAC 57.880 39.130 0.00 0.00 0.00 3.18
26 27 4.320202 GCATTTACATTGACCACTTGACGT 60.320 41.667 0.00 0.00 0.00 4.34
27 28 5.106869 GCATTTACATTGACCACTTGACGTA 60.107 40.000 0.00 0.00 0.00 3.57
30 31 3.799366 ACATTGACCACTTGACGTAACA 58.201 40.909 0.00 0.00 0.00 2.41
31 32 4.193090 ACATTGACCACTTGACGTAACAA 58.807 39.130 0.00 0.00 0.00 2.83
32 33 4.034742 ACATTGACCACTTGACGTAACAAC 59.965 41.667 0.00 0.00 0.00 3.32
33 34 3.530265 TGACCACTTGACGTAACAACT 57.470 42.857 0.00 0.00 0.00 3.16
36 37 3.602483 ACCACTTGACGTAACAACTTGT 58.398 40.909 0.00 0.00 0.00 3.16
38 39 3.372822 CCACTTGACGTAACAACTTGTGT 59.627 43.478 0.00 0.00 44.64 3.72
40 41 5.235616 CCACTTGACGTAACAACTTGTGTAT 59.764 40.000 0.00 0.00 40.60 2.29
43 44 3.495377 TGACGTAACAACTTGTGTATGCC 59.505 43.478 0.00 0.00 40.60 4.40
44 45 3.468770 ACGTAACAACTTGTGTATGCCA 58.531 40.909 0.00 0.00 40.60 4.92
46 47 4.024387 ACGTAACAACTTGTGTATGCCAAG 60.024 41.667 9.38 9.38 40.60 3.61
47 48 4.212425 CGTAACAACTTGTGTATGCCAAGA 59.788 41.667 15.31 0.00 40.60 3.02
49 50 3.550820 ACAACTTGTGTATGCCAAGACA 58.449 40.909 15.31 0.00 41.44 3.41
51 52 3.492102 ACTTGTGTATGCCAAGACAGT 57.508 42.857 15.31 0.00 41.44 3.55
54 55 4.283467 ACTTGTGTATGCCAAGACAGTAGA 59.717 41.667 15.31 0.00 41.44 2.59
56 57 5.420725 TGTGTATGCCAAGACAGTAGATT 57.579 39.130 0.00 0.00 0.00 2.40
57 58 5.178061 TGTGTATGCCAAGACAGTAGATTG 58.822 41.667 0.00 0.00 0.00 2.67
58 59 4.572389 GTGTATGCCAAGACAGTAGATTGG 59.428 45.833 7.14 7.14 45.16 3.16
60 61 2.265367 TGCCAAGACAGTAGATTGGGA 58.735 47.619 11.74 7.50 43.06 4.37
61 62 2.846206 TGCCAAGACAGTAGATTGGGAT 59.154 45.455 11.74 0.00 43.06 3.85
62 63 3.266772 TGCCAAGACAGTAGATTGGGATT 59.733 43.478 11.74 0.00 43.06 3.01
63 64 3.629398 GCCAAGACAGTAGATTGGGATTG 59.371 47.826 11.74 0.00 43.06 2.67
64 65 4.848357 CCAAGACAGTAGATTGGGATTGT 58.152 43.478 4.40 0.00 39.87 2.71
65 66 4.637534 CCAAGACAGTAGATTGGGATTGTG 59.362 45.833 4.40 0.00 39.87 3.33
66 67 5.248640 CAAGACAGTAGATTGGGATTGTGT 58.751 41.667 0.00 0.00 0.00 3.72
67 68 5.091261 AGACAGTAGATTGGGATTGTGTC 57.909 43.478 0.00 0.00 34.55 3.67
68 69 3.861840 ACAGTAGATTGGGATTGTGTCG 58.138 45.455 0.00 0.00 0.00 4.35
69 70 3.513912 ACAGTAGATTGGGATTGTGTCGA 59.486 43.478 0.00 0.00 0.00 4.20
71 72 3.513912 AGTAGATTGGGATTGTGTCGACA 59.486 43.478 15.76 15.76 0.00 4.35
72 73 2.977914 AGATTGGGATTGTGTCGACAG 58.022 47.619 20.73 0.00 32.26 3.51
73 74 2.303022 AGATTGGGATTGTGTCGACAGT 59.697 45.455 20.73 8.20 32.26 3.55
74 75 2.163818 TTGGGATTGTGTCGACAGTC 57.836 50.000 20.73 16.60 37.94 3.51
75 76 1.338107 TGGGATTGTGTCGACAGTCT 58.662 50.000 20.73 5.90 38.55 3.24
77 78 2.230508 TGGGATTGTGTCGACAGTCTAC 59.769 50.000 20.73 7.37 38.55 2.59
79 80 3.056749 GGGATTGTGTCGACAGTCTACTT 60.057 47.826 20.73 0.00 38.55 2.24
82 83 4.642445 TTGTGTCGACAGTCTACTTTGA 57.358 40.909 20.73 0.00 32.26 2.69
83 84 4.642445 TGTGTCGACAGTCTACTTTGAA 57.358 40.909 20.73 0.00 0.00 2.69
84 85 4.357142 TGTGTCGACAGTCTACTTTGAAC 58.643 43.478 20.73 2.57 0.00 3.18
85 86 3.421231 GTGTCGACAGTCTACTTTGAACG 59.579 47.826 20.73 0.00 0.00 3.95
86 87 2.404361 GTCGACAGTCTACTTTGAACGC 59.596 50.000 11.55 0.00 0.00 4.84
88 89 2.792674 CGACAGTCTACTTTGAACGCAA 59.207 45.455 0.00 0.00 0.00 4.85
89 90 3.428870 CGACAGTCTACTTTGAACGCAAT 59.571 43.478 0.00 0.00 33.25 3.56
90 91 4.433022 CGACAGTCTACTTTGAACGCAATC 60.433 45.833 0.00 0.00 33.25 2.67
91 92 4.377021 ACAGTCTACTTTGAACGCAATCA 58.623 39.130 0.00 0.00 33.25 2.57
92 93 4.814234 ACAGTCTACTTTGAACGCAATCAA 59.186 37.500 0.00 0.00 37.53 2.57
93 94 5.470098 ACAGTCTACTTTGAACGCAATCAAT 59.530 36.000 2.36 0.00 38.98 2.57
94 95 5.791974 CAGTCTACTTTGAACGCAATCAATG 59.208 40.000 10.84 10.84 38.98 2.82
95 96 5.700832 AGTCTACTTTGAACGCAATCAATGA 59.299 36.000 16.46 0.00 38.98 2.57
96 97 5.790495 GTCTACTTTGAACGCAATCAATGAC 59.210 40.000 16.46 11.68 38.98 3.06
97 98 3.554524 ACTTTGAACGCAATCAATGACG 58.445 40.909 16.46 0.00 38.98 4.35
98 99 3.249799 ACTTTGAACGCAATCAATGACGA 59.750 39.130 16.46 0.00 38.98 4.20
99 100 2.873170 TGAACGCAATCAATGACGAC 57.127 45.000 0.00 0.00 34.24 4.34
100 101 2.139118 TGAACGCAATCAATGACGACA 58.861 42.857 0.00 0.00 34.24 4.35
101 102 2.741517 TGAACGCAATCAATGACGACAT 59.258 40.909 0.00 0.00 38.50 3.06
102 103 2.811902 ACGCAATCAATGACGACATG 57.188 45.000 0.05 0.00 36.79 3.21
103 104 2.345876 ACGCAATCAATGACGACATGA 58.654 42.857 0.00 2.21 36.79 3.07
104 105 2.741517 ACGCAATCAATGACGACATGAA 59.258 40.909 0.00 0.00 36.79 2.57
105 106 3.093574 CGCAATCAATGACGACATGAAC 58.906 45.455 0.00 0.00 36.79 3.18
107 108 3.848019 GCAATCAATGACGACATGAACAC 59.152 43.478 0.00 0.00 36.79 3.32
108 109 4.613394 GCAATCAATGACGACATGAACACA 60.613 41.667 0.00 0.00 36.79 3.72
109 110 4.934075 ATCAATGACGACATGAACACAG 57.066 40.909 0.00 0.00 36.79 3.66
110 111 3.727726 TCAATGACGACATGAACACAGT 58.272 40.909 0.00 0.00 36.79 3.55
111 112 4.877282 TCAATGACGACATGAACACAGTA 58.123 39.130 0.00 0.00 36.79 2.74
113 114 5.176774 TCAATGACGACATGAACACAGTAAC 59.823 40.000 0.00 0.00 36.79 2.50
114 115 4.048241 TGACGACATGAACACAGTAACA 57.952 40.909 0.00 0.00 0.00 2.41
116 117 2.792674 ACGACATGAACACAGTAACACG 59.207 45.455 0.00 0.00 0.00 4.49
117 118 2.792674 CGACATGAACACAGTAACACGT 59.207 45.455 0.00 0.00 0.00 4.49
118 119 3.361627 CGACATGAACACAGTAACACGTG 60.362 47.826 15.48 15.48 39.10 4.49
119 120 3.787785 ACATGAACACAGTAACACGTGA 58.212 40.909 25.01 0.00 36.91 4.35
120 121 4.185394 ACATGAACACAGTAACACGTGAA 58.815 39.130 25.01 6.94 36.91 3.18
122 123 5.295787 ACATGAACACAGTAACACGTGAAAT 59.704 36.000 25.01 10.44 36.91 2.17
124 125 4.271533 TGAACACAGTAACACGTGAAATCC 59.728 41.667 25.01 4.99 36.91 3.01
125 126 4.067972 ACACAGTAACACGTGAAATCCT 57.932 40.909 25.01 7.32 36.91 3.24
126 127 5.204409 ACACAGTAACACGTGAAATCCTA 57.796 39.130 25.01 0.59 36.91 2.94
127 128 5.790593 ACACAGTAACACGTGAAATCCTAT 58.209 37.500 25.01 0.00 36.91 2.57
128 129 6.927416 ACACAGTAACACGTGAAATCCTATA 58.073 36.000 25.01 0.00 36.91 1.31
129 130 7.553334 ACACAGTAACACGTGAAATCCTATAT 58.447 34.615 25.01 0.00 36.91 0.86
130 131 7.491372 ACACAGTAACACGTGAAATCCTATATG 59.509 37.037 25.01 9.70 36.91 1.78
131 132 7.704899 CACAGTAACACGTGAAATCCTATATGA 59.295 37.037 25.01 0.00 35.02 2.15
132 133 7.705325 ACAGTAACACGTGAAATCCTATATGAC 59.295 37.037 25.01 0.00 0.00 3.06
133 134 6.916387 AGTAACACGTGAAATCCTATATGACG 59.084 38.462 25.01 0.00 0.00 4.35
134 135 4.049186 ACACGTGAAATCCTATATGACGC 58.951 43.478 25.01 0.00 0.00 5.19
135 136 4.202121 ACACGTGAAATCCTATATGACGCT 60.202 41.667 25.01 0.00 0.00 5.07
137 138 4.278669 ACGTGAAATCCTATATGACGCTCT 59.721 41.667 0.00 0.00 0.00 4.09
138 139 4.854291 CGTGAAATCCTATATGACGCTCTC 59.146 45.833 0.00 0.00 0.00 3.20
139 140 5.562890 CGTGAAATCCTATATGACGCTCTCA 60.563 44.000 0.00 0.00 0.00 3.27
140 141 5.861251 GTGAAATCCTATATGACGCTCTCAG 59.139 44.000 0.00 0.00 30.20 3.35
141 142 4.448537 AATCCTATATGACGCTCTCAGC 57.551 45.455 0.00 0.00 38.02 4.26
186 187 2.577449 GGAACCACATTAAATGGCCG 57.423 50.000 8.66 0.00 41.31 6.13
187 188 2.096248 GGAACCACATTAAATGGCCGA 58.904 47.619 8.66 0.00 41.31 5.54
232 235 1.856265 GCCACTGGCTTCGAACCTTG 61.856 60.000 13.28 12.07 46.69 3.61
290 294 6.461927 GGTTTTTGAACCGGTATTTTCTTCCT 60.462 38.462 8.00 0.00 32.47 3.36
438 445 9.891535 GATCGCAATTTTTAAAATGTTCTCATC 57.108 29.630 3.51 0.00 32.56 2.92
509 516 7.736447 TTGTTGTGAATTTCAAAACCTGTTT 57.264 28.000 23.45 0.00 42.51 2.83
737 980 2.812358 AAAATTGGGCGACAACCTTC 57.188 45.000 0.00 0.00 42.94 3.46
738 981 1.698506 AAATTGGGCGACAACCTTCA 58.301 45.000 0.00 0.00 42.94 3.02
746 1403 1.813513 CGACAACCTTCAGGCTTCAT 58.186 50.000 0.00 0.00 39.32 2.57
753 1410 5.011023 ACAACCTTCAGGCTTCATTTTAAGG 59.989 40.000 0.00 0.00 39.32 2.69
755 1412 5.147767 ACCTTCAGGCTTCATTTTAAGGTT 58.852 37.500 0.00 0.00 41.81 3.50
756 1413 5.011023 ACCTTCAGGCTTCATTTTAAGGTTG 59.989 40.000 0.00 0.00 41.81 3.77
757 1414 5.467035 TTCAGGCTTCATTTTAAGGTTGG 57.533 39.130 0.00 0.00 0.00 3.77
762 1419 3.833442 CTTCATTTTAAGGTTGGGCGAC 58.167 45.455 0.00 0.00 0.00 5.19
777 1434 2.347731 GGCGACAACCTTCTTCCTAAG 58.652 52.381 0.00 0.00 0.00 2.18
781 1438 4.083961 GCGACAACCTTCTTCCTAAGAAAC 60.084 45.833 3.88 0.00 46.13 2.78
807 1569 1.928503 GCATTTGCATCGACCATTTGG 59.071 47.619 0.00 0.00 41.59 3.28
812 1574 1.922135 GCATCGACCATTTGGCGTGT 61.922 55.000 11.34 2.64 39.32 4.49
816 1578 0.385473 CGACCATTTGGCGTGTCAAC 60.385 55.000 0.00 0.00 39.32 3.18
824 1586 2.717580 TGGCGTGTCAACTAGTGTAG 57.282 50.000 0.00 0.00 0.00 2.74
883 1645 0.463654 TTTGGACGCAAGCAGTGACT 60.464 50.000 0.00 0.00 45.62 3.41
887 1649 1.287730 GACGCAAGCAGTGACTCCAG 61.288 60.000 0.00 0.00 45.62 3.86
919 1681 0.873312 CACGGATCCACGATCAGCAG 60.873 60.000 13.41 0.00 40.50 4.24
920 1682 1.300465 CGGATCCACGATCAGCAGG 60.300 63.158 13.41 0.00 40.50 4.85
1029 3622 0.172578 CGCTGAAGGTGTACGGATGA 59.827 55.000 0.00 0.00 0.00 2.92
1146 3739 4.069232 CTGCCGGACTTCCTCGCA 62.069 66.667 5.05 6.70 36.84 5.10
1159 3752 0.250727 CCTCGCAAAGAACCCCTTCA 60.251 55.000 0.00 0.00 33.02 3.02
1206 3805 1.897802 GACCTCACCCTCTTCGGTAAA 59.102 52.381 0.00 0.00 33.67 2.01
1254 3867 2.348472 ACCCCAGATGTCAAGGAGAAA 58.652 47.619 0.00 0.00 0.00 2.52
1261 3874 4.932200 CAGATGTCAAGGAGAAACTGTACC 59.068 45.833 0.00 0.00 0.00 3.34
1274 3930 6.402222 AGAAACTGTACCAGTGATCAGAATC 58.598 40.000 0.00 10.75 44.62 2.52
1327 3983 0.868406 GTGCTTCGCAAGTACAAGCT 59.132 50.000 13.95 0.00 42.73 3.74
1343 4002 3.324930 CTGGAGCTGCTGGTGGGA 61.325 66.667 7.01 0.00 0.00 4.37
1373 4032 3.896133 GAGTCGGCGGCGATGGTA 61.896 66.667 36.75 12.01 0.00 3.25
1531 4190 1.076014 TGCTGGAGGTGTACGAGGA 59.924 57.895 0.00 0.00 0.00 3.71
1588 4247 4.069232 CAGCCTCGCCGACCTCAA 62.069 66.667 0.00 0.00 0.00 3.02
1613 4272 0.613260 TCCCGCTCATGCACTACTTT 59.387 50.000 0.00 0.00 39.64 2.66
1679 4338 3.075005 GCGTGGTGGGAGGAGCTA 61.075 66.667 0.00 0.00 0.00 3.32
1784 4443 0.797542 GCCGGCGTTTATGTTGTGTA 59.202 50.000 12.58 0.00 0.00 2.90
1802 4464 9.072375 TGTTGTGTATTTCAGATTGTTTATCCA 57.928 29.630 0.00 0.00 33.45 3.41
1843 4505 2.905085 TGGTCCGGGTCAGTACAATTTA 59.095 45.455 0.00 0.00 0.00 1.40
1869 4531 7.689446 TTCAAATACCATGTTCGAACCATTA 57.311 32.000 24.78 11.33 0.00 1.90
1923 4585 9.755804 TTCTCAATAATCTGAGCAAGTATAGTG 57.244 33.333 0.00 0.00 42.25 2.74
1929 4591 7.602517 AATCTGAGCAAGTATAGTGTTTGTC 57.397 36.000 0.00 0.00 0.00 3.18
1930 4592 5.479306 TCTGAGCAAGTATAGTGTTTGTCC 58.521 41.667 0.00 0.00 0.00 4.02
1931 4593 4.242475 TGAGCAAGTATAGTGTTTGTCCG 58.758 43.478 0.00 0.00 0.00 4.79
1932 4594 4.021807 TGAGCAAGTATAGTGTTTGTCCGA 60.022 41.667 0.00 0.00 0.00 4.55
1933 4595 4.890088 AGCAAGTATAGTGTTTGTCCGAA 58.110 39.130 0.00 0.00 0.00 4.30
1934 4596 5.302360 AGCAAGTATAGTGTTTGTCCGAAA 58.698 37.500 0.00 0.00 0.00 3.46
1935 4597 5.761234 AGCAAGTATAGTGTTTGTCCGAAAA 59.239 36.000 0.00 0.00 0.00 2.29
1936 4598 5.849604 GCAAGTATAGTGTTTGTCCGAAAAC 59.150 40.000 0.00 0.00 39.90 2.43
2018 4680 0.895530 TCTAAGAGAACCAGCCCACG 59.104 55.000 0.00 0.00 0.00 4.94
2293 4964 5.489792 AGTTGTCATGGATACTCAACTGT 57.510 39.130 7.83 0.00 44.20 3.55
2294 4965 5.869579 AGTTGTCATGGATACTCAACTGTT 58.130 37.500 7.83 0.00 44.20 3.16
2323 4995 1.277273 CTCAGGTCAAGTGCCAGATGA 59.723 52.381 0.00 0.00 0.00 2.92
2430 5102 7.177921 ACCTACTAACACTAAGCAGTTGTCATA 59.822 37.037 0.00 0.00 30.46 2.15
2468 5140 6.996509 ACTACAGTTGCCATGATTTGAAAAT 58.003 32.000 0.00 0.00 0.00 1.82
2474 5146 8.030692 CAGTTGCCATGATTTGAAAATCTTAGA 58.969 33.333 14.97 0.00 43.97 2.10
2590 5265 1.060729 TACAAGCACACTAGGGGCAA 58.939 50.000 7.99 0.00 0.00 4.52
2666 5348 3.077359 GAGTTGCCATCTGCTTACAAGT 58.923 45.455 0.00 0.00 42.00 3.16
2668 5350 4.848357 AGTTGCCATCTGCTTACAAGTAT 58.152 39.130 0.00 0.00 42.00 2.12
2674 5356 5.740224 GCCATCTGCTTACAAGTATGCTAGA 60.740 44.000 16.00 15.65 37.20 2.43
2748 5431 4.988716 AGGAGACGGGCGTGTGGA 62.989 66.667 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.403092 CGTCAAGTGGTCAATGTAAATGCATA 60.403 38.462 0.00 0.00 0.00 3.14
6 7 5.816258 TGTTACGTCAAGTGGTCAATGTAAA 59.184 36.000 0.00 0.00 0.00 2.01
7 8 5.358090 TGTTACGTCAAGTGGTCAATGTAA 58.642 37.500 0.00 0.00 0.00 2.41
8 9 4.946445 TGTTACGTCAAGTGGTCAATGTA 58.054 39.130 0.00 0.00 0.00 2.29
9 10 3.799366 TGTTACGTCAAGTGGTCAATGT 58.201 40.909 0.00 0.00 0.00 2.71
11 12 4.448210 AGTTGTTACGTCAAGTGGTCAAT 58.552 39.130 0.00 0.00 30.92 2.57
12 13 3.864243 AGTTGTTACGTCAAGTGGTCAA 58.136 40.909 0.00 0.00 30.92 3.18
13 14 3.530265 AGTTGTTACGTCAAGTGGTCA 57.470 42.857 0.00 0.00 30.92 4.02
14 15 3.619929 ACAAGTTGTTACGTCAAGTGGTC 59.380 43.478 1.64 0.00 31.54 4.02
15 16 3.372822 CACAAGTTGTTACGTCAAGTGGT 59.627 43.478 5.57 0.00 35.89 4.16
17 18 4.593597 ACACAAGTTGTTACGTCAAGTG 57.406 40.909 5.57 0.00 33.09 3.16
19 20 5.137403 GCATACACAAGTTGTTACGTCAAG 58.863 41.667 5.57 0.00 39.91 3.02
20 21 4.024725 GGCATACACAAGTTGTTACGTCAA 60.025 41.667 5.57 0.00 39.91 3.18
21 22 3.495377 GGCATACACAAGTTGTTACGTCA 59.505 43.478 5.57 0.00 39.91 4.35
22 23 3.495377 TGGCATACACAAGTTGTTACGTC 59.505 43.478 5.57 0.00 39.91 4.34
23 24 3.468770 TGGCATACACAAGTTGTTACGT 58.531 40.909 5.57 4.22 39.91 3.57
24 25 4.212425 TCTTGGCATACACAAGTTGTTACG 59.788 41.667 5.57 0.00 44.29 3.18
26 27 5.126779 TGTCTTGGCATACACAAGTTGTTA 58.873 37.500 5.57 3.31 44.29 2.41
27 28 3.951037 TGTCTTGGCATACACAAGTTGTT 59.049 39.130 5.57 1.02 44.29 2.83
30 31 3.820557 ACTGTCTTGGCATACACAAGTT 58.179 40.909 5.24 0.00 44.29 2.66
31 32 3.492102 ACTGTCTTGGCATACACAAGT 57.508 42.857 5.24 0.00 44.29 3.16
32 33 4.820897 TCTACTGTCTTGGCATACACAAG 58.179 43.478 0.00 0.00 45.08 3.16
33 34 4.882842 TCTACTGTCTTGGCATACACAA 57.117 40.909 0.00 0.00 0.00 3.33
36 37 4.384098 CCCAATCTACTGTCTTGGCATACA 60.384 45.833 9.86 3.53 38.47 2.29
38 39 4.037222 TCCCAATCTACTGTCTTGGCATA 58.963 43.478 9.86 0.00 38.47 3.14
40 41 2.265367 TCCCAATCTACTGTCTTGGCA 58.735 47.619 9.86 0.00 38.47 4.92
43 44 5.248640 ACACAATCCCAATCTACTGTCTTG 58.751 41.667 0.00 0.00 0.00 3.02
44 45 5.491982 GACACAATCCCAATCTACTGTCTT 58.508 41.667 0.00 0.00 0.00 3.01
46 47 3.865745 CGACACAATCCCAATCTACTGTC 59.134 47.826 0.00 0.00 0.00 3.51
47 48 3.513912 TCGACACAATCCCAATCTACTGT 59.486 43.478 0.00 0.00 0.00 3.55
49 50 3.513912 TGTCGACACAATCCCAATCTACT 59.486 43.478 15.76 0.00 0.00 2.57
51 52 3.513912 ACTGTCGACACAATCCCAATCTA 59.486 43.478 15.76 0.00 29.82 1.98
54 55 2.303022 AGACTGTCGACACAATCCCAAT 59.697 45.455 15.76 0.00 28.25 3.16
56 57 1.338107 AGACTGTCGACACAATCCCA 58.662 50.000 15.76 0.00 28.25 4.37
57 58 2.492484 AGTAGACTGTCGACACAATCCC 59.508 50.000 15.76 6.53 28.25 3.85
58 59 3.851976 AGTAGACTGTCGACACAATCC 57.148 47.619 15.76 2.91 28.25 3.01
60 61 5.196341 TCAAAGTAGACTGTCGACACAAT 57.804 39.130 15.76 2.68 29.82 2.71
61 62 4.642445 TCAAAGTAGACTGTCGACACAA 57.358 40.909 15.76 0.00 29.82 3.33
62 63 4.357142 GTTCAAAGTAGACTGTCGACACA 58.643 43.478 15.76 0.00 0.00 3.72
63 64 3.421231 CGTTCAAAGTAGACTGTCGACAC 59.579 47.826 15.76 6.06 0.00 3.67
64 65 3.624900 CGTTCAAAGTAGACTGTCGACA 58.375 45.455 18.88 18.88 0.00 4.35
65 66 2.404361 GCGTTCAAAGTAGACTGTCGAC 59.596 50.000 9.11 9.11 0.00 4.20
66 67 2.033675 TGCGTTCAAAGTAGACTGTCGA 59.966 45.455 1.52 0.00 0.00 4.20
67 68 2.390938 TGCGTTCAAAGTAGACTGTCG 58.609 47.619 1.52 0.00 0.00 4.35
68 69 4.447724 TGATTGCGTTCAAAGTAGACTGTC 59.552 41.667 0.00 0.00 35.56 3.51
69 70 4.377021 TGATTGCGTTCAAAGTAGACTGT 58.623 39.130 0.00 0.00 35.56 3.55
71 72 5.700832 TCATTGATTGCGTTCAAAGTAGACT 59.299 36.000 5.37 0.00 38.98 3.24
72 73 5.790495 GTCATTGATTGCGTTCAAAGTAGAC 59.210 40.000 5.37 7.62 38.98 2.59
73 74 5.389411 CGTCATTGATTGCGTTCAAAGTAGA 60.389 40.000 5.37 0.64 38.98 2.59
74 75 4.783036 CGTCATTGATTGCGTTCAAAGTAG 59.217 41.667 5.37 0.00 38.98 2.57
75 76 4.449405 TCGTCATTGATTGCGTTCAAAGTA 59.551 37.500 5.37 0.00 38.98 2.24
77 78 3.599514 GTCGTCATTGATTGCGTTCAAAG 59.400 43.478 5.37 2.06 38.98 2.77
79 80 2.545946 TGTCGTCATTGATTGCGTTCAA 59.454 40.909 3.89 3.89 39.77 2.69
82 83 2.741517 TCATGTCGTCATTGATTGCGTT 59.258 40.909 0.00 0.00 31.15 4.84
83 84 2.345876 TCATGTCGTCATTGATTGCGT 58.654 42.857 0.00 0.00 31.15 5.24
84 85 3.093574 GTTCATGTCGTCATTGATTGCG 58.906 45.455 0.00 0.00 31.15 4.85
85 86 3.848019 GTGTTCATGTCGTCATTGATTGC 59.152 43.478 0.00 0.00 31.15 3.56
86 87 5.033326 TGTGTTCATGTCGTCATTGATTG 57.967 39.130 0.00 0.00 31.15 2.67
88 89 4.318332 ACTGTGTTCATGTCGTCATTGAT 58.682 39.130 0.00 0.00 31.15 2.57
89 90 3.727726 ACTGTGTTCATGTCGTCATTGA 58.272 40.909 0.00 0.00 31.15 2.57
90 91 5.050431 TGTTACTGTGTTCATGTCGTCATTG 60.050 40.000 0.00 0.00 31.15 2.82
91 92 5.050363 GTGTTACTGTGTTCATGTCGTCATT 60.050 40.000 0.00 0.00 31.15 2.57
92 93 4.447724 GTGTTACTGTGTTCATGTCGTCAT 59.552 41.667 0.00 0.00 34.21 3.06
93 94 3.799963 GTGTTACTGTGTTCATGTCGTCA 59.200 43.478 0.00 0.00 0.00 4.35
94 95 3.121463 CGTGTTACTGTGTTCATGTCGTC 60.121 47.826 0.00 0.00 0.00 4.20
95 96 2.792674 CGTGTTACTGTGTTCATGTCGT 59.207 45.455 0.00 0.00 0.00 4.34
96 97 2.792674 ACGTGTTACTGTGTTCATGTCG 59.207 45.455 0.00 0.00 0.00 4.35
97 98 3.799963 TCACGTGTTACTGTGTTCATGTC 59.200 43.478 16.51 0.00 37.38 3.06
98 99 3.787785 TCACGTGTTACTGTGTTCATGT 58.212 40.909 16.51 0.00 37.38 3.21
99 100 4.787381 TTCACGTGTTACTGTGTTCATG 57.213 40.909 16.51 0.00 37.38 3.07
100 101 5.049680 GGATTTCACGTGTTACTGTGTTCAT 60.050 40.000 16.51 0.00 37.38 2.57
101 102 4.271533 GGATTTCACGTGTTACTGTGTTCA 59.728 41.667 16.51 0.00 37.38 3.18
102 103 4.510340 AGGATTTCACGTGTTACTGTGTTC 59.490 41.667 16.51 1.47 37.38 3.18
103 104 4.448210 AGGATTTCACGTGTTACTGTGTT 58.552 39.130 16.51 0.00 37.38 3.32
104 105 4.067972 AGGATTTCACGTGTTACTGTGT 57.932 40.909 16.51 0.00 37.38 3.72
105 106 7.704899 TCATATAGGATTTCACGTGTTACTGTG 59.295 37.037 16.51 8.81 37.44 3.66
107 108 7.096599 CGTCATATAGGATTTCACGTGTTACTG 60.097 40.741 16.51 1.61 0.00 2.74
108 109 6.916387 CGTCATATAGGATTTCACGTGTTACT 59.084 38.462 16.51 10.29 0.00 2.24
109 110 6.345565 GCGTCATATAGGATTTCACGTGTTAC 60.346 42.308 16.51 2.72 0.00 2.50
110 111 5.688621 GCGTCATATAGGATTTCACGTGTTA 59.311 40.000 16.51 5.09 0.00 2.41
111 112 4.506654 GCGTCATATAGGATTTCACGTGTT 59.493 41.667 16.51 1.50 0.00 3.32
113 114 4.299155 AGCGTCATATAGGATTTCACGTG 58.701 43.478 9.94 9.94 0.00 4.49
114 115 4.278669 AGAGCGTCATATAGGATTTCACGT 59.721 41.667 0.00 0.00 0.00 4.49
116 117 5.773575 TGAGAGCGTCATATAGGATTTCAC 58.226 41.667 0.00 0.00 0.00 3.18
117 118 5.565637 GCTGAGAGCGTCATATAGGATTTCA 60.566 44.000 0.00 0.00 33.51 2.69
118 119 4.862018 GCTGAGAGCGTCATATAGGATTTC 59.138 45.833 0.00 0.00 33.51 2.17
119 120 4.815269 GCTGAGAGCGTCATATAGGATTT 58.185 43.478 0.00 0.00 33.51 2.17
120 121 4.448537 GCTGAGAGCGTCATATAGGATT 57.551 45.455 0.00 0.00 33.51 3.01
133 134 1.135141 AGACATTCTGACGCTGAGAGC 60.135 52.381 0.00 0.00 38.02 4.09
134 135 2.937469 AGACATTCTGACGCTGAGAG 57.063 50.000 0.00 0.00 0.00 3.20
135 136 3.320626 CAAAGACATTCTGACGCTGAGA 58.679 45.455 0.00 0.00 0.00 3.27
137 138 1.800586 GCAAAGACATTCTGACGCTGA 59.199 47.619 0.00 0.00 0.00 4.26
138 139 1.802960 AGCAAAGACATTCTGACGCTG 59.197 47.619 0.00 0.00 28.79 5.18
139 140 2.175878 AGCAAAGACATTCTGACGCT 57.824 45.000 0.00 0.00 0.00 5.07
140 141 2.224079 TGAAGCAAAGACATTCTGACGC 59.776 45.455 0.00 0.00 0.00 5.19
141 142 3.248363 TGTGAAGCAAAGACATTCTGACG 59.752 43.478 0.00 0.00 0.00 4.35
144 145 4.534168 CTGTGTGAAGCAAAGACATTCTG 58.466 43.478 0.00 0.00 34.27 3.02
177 178 1.078988 GTCGTGGGTCGGCCATTTA 60.079 57.895 9.07 0.00 38.31 1.40
181 182 4.386951 CATGTCGTGGGTCGGCCA 62.387 66.667 9.07 0.00 44.19 5.36
182 183 2.306255 ATACATGTCGTGGGTCGGCC 62.306 60.000 0.00 0.00 44.19 6.13
185 186 3.153676 TGTAATACATGTCGTGGGTCG 57.846 47.619 0.00 0.00 41.41 4.79
410 417 9.421806 TGAGAACATTTTAAAAATTGCGATCAT 57.578 25.926 4.44 0.00 0.00 2.45
411 418 8.809159 TGAGAACATTTTAAAAATTGCGATCA 57.191 26.923 4.44 2.77 0.00 2.92
479 486 9.623350 AGGTTTTGAAATTCACAACAAATTTTG 57.377 25.926 21.74 7.59 38.44 2.44
480 487 9.623350 CAGGTTTTGAAATTCACAACAAATTTT 57.377 25.926 21.74 2.89 38.44 1.82
482 489 8.334263 ACAGGTTTTGAAATTCACAACAAATT 57.666 26.923 21.74 6.19 38.44 1.82
484 491 7.736447 AACAGGTTTTGAAATTCACAACAAA 57.264 28.000 21.74 6.85 38.44 2.83
485 492 7.227512 ACAAACAGGTTTTGAAATTCACAACAA 59.772 29.630 21.74 1.17 38.44 2.83
486 493 6.708054 ACAAACAGGTTTTGAAATTCACAACA 59.292 30.769 21.74 0.00 38.44 3.33
487 494 7.127917 ACAAACAGGTTTTGAAATTCACAAC 57.872 32.000 14.61 14.61 36.59 3.32
509 516 8.770438 ACTCTGAGCATTTTTAAAACAAAACA 57.230 26.923 4.19 0.00 0.00 2.83
519 526 9.598517 ACAAATTTGAAACTCTGAGCATTTTTA 57.401 25.926 24.64 0.00 0.00 1.52
523 530 7.495055 AGAACAAATTTGAAACTCTGAGCATT 58.505 30.769 24.64 3.52 0.00 3.56
712 741 6.347859 AGGTTGTCGCCCAATTTTATTTTA 57.652 33.333 0.00 0.00 35.02 1.52
715 744 4.282195 TGAAGGTTGTCGCCCAATTTTATT 59.718 37.500 0.00 0.00 35.02 1.40
716 745 3.829601 TGAAGGTTGTCGCCCAATTTTAT 59.170 39.130 0.00 0.00 35.02 1.40
726 969 0.884704 TGAAGCCTGAAGGTTGTCGC 60.885 55.000 0.00 0.00 35.97 5.19
727 970 1.813513 ATGAAGCCTGAAGGTTGTCG 58.186 50.000 0.00 0.00 35.97 4.35
729 972 5.011023 CCTTAAAATGAAGCCTGAAGGTTGT 59.989 40.000 0.00 0.00 35.97 3.32
737 980 3.617288 GCCCAACCTTAAAATGAAGCCTG 60.617 47.826 0.00 0.00 0.00 4.85
738 981 2.567169 GCCCAACCTTAAAATGAAGCCT 59.433 45.455 0.00 0.00 0.00 4.58
755 1412 1.072505 GGAAGAAGGTTGTCGCCCA 59.927 57.895 0.00 0.00 0.00 5.36
756 1413 0.611714 TAGGAAGAAGGTTGTCGCCC 59.388 55.000 0.00 0.00 0.00 6.13
757 1414 2.028385 TCTTAGGAAGAAGGTTGTCGCC 60.028 50.000 0.00 0.00 33.83 5.54
807 1569 1.067776 AGCCTACACTAGTTGACACGC 60.068 52.381 0.00 0.00 0.00 5.34
812 1574 3.437213 TGCCTTAGCCTACACTAGTTGA 58.563 45.455 0.00 0.00 38.69 3.18
816 1578 2.761208 ACACTGCCTTAGCCTACACTAG 59.239 50.000 0.00 0.00 38.69 2.57
824 1586 0.811616 CGATCCACACTGCCTTAGCC 60.812 60.000 0.00 0.00 38.69 3.93
883 1645 1.536496 CGTGTTACGTGTGTTCCTGGA 60.536 52.381 0.00 0.00 36.74 3.86
887 1649 1.723003 GATCCGTGTTACGTGTGTTCC 59.277 52.381 0.00 0.00 40.58 3.62
919 1681 0.941542 TGATTAAATAGGCGCGCACC 59.058 50.000 34.42 17.03 0.00 5.01
920 1682 2.969443 ATGATTAAATAGGCGCGCAC 57.031 45.000 34.42 21.95 0.00 5.34
1029 3622 3.444737 ACGAACGGTGAGACTGCT 58.555 55.556 0.00 0.00 0.00 4.24
1065 3658 4.704103 ACGCCTGCCTCCTCCAGA 62.704 66.667 0.00 0.00 32.03 3.86
1146 3739 0.113190 CCTGGCTGAAGGGGTTCTTT 59.887 55.000 0.00 0.00 35.50 2.52
1206 3805 5.144100 ACAGAGAAGAGATAATGACGGGAT 58.856 41.667 0.00 0.00 0.00 3.85
1261 3874 3.681417 TGCGTGAAAGATTCTGATCACTG 59.319 43.478 21.30 17.29 39.94 3.66
1327 3983 3.324930 CTCCCACCAGCAGCTCCA 61.325 66.667 0.00 0.00 0.00 3.86
1373 4032 2.524394 ACCTCCAGCCACACGTCT 60.524 61.111 0.00 0.00 0.00 4.18
1541 4200 2.879462 GCGAGGTACTTGGACGCG 60.879 66.667 3.53 3.53 41.55 6.01
1588 4247 2.045926 GCATGAGCGGGAAGTGGT 60.046 61.111 0.00 0.00 0.00 4.16
1613 4272 1.354155 CGCGTACTCCGTCTGCATA 59.646 57.895 0.00 0.00 39.32 3.14
1784 4443 8.408043 TTCACACTGGATAAACAATCTGAAAT 57.592 30.769 0.00 0.00 34.75 2.17
1802 4464 7.433680 GGACCACTTTTTATTTCATTCACACT 58.566 34.615 0.00 0.00 0.00 3.55
1843 4505 6.582677 TGGTTCGAACATGGTATTTGAAAT 57.417 33.333 28.24 0.00 32.48 2.17
1898 4560 8.918116 ACACTATACTTGCTCAGATTATTGAGA 58.082 33.333 7.18 0.00 45.95 3.27
1930 4592 3.717830 CAGTTATCGTTGTCCGTTTTCG 58.282 45.455 0.00 0.00 43.67 3.46
1931 4593 3.476181 GCAGTTATCGTTGTCCGTTTTC 58.524 45.455 0.00 0.00 37.94 2.29
1932 4594 2.224784 GGCAGTTATCGTTGTCCGTTTT 59.775 45.455 0.00 0.00 37.94 2.43
1933 4595 1.802365 GGCAGTTATCGTTGTCCGTTT 59.198 47.619 0.00 0.00 37.94 3.60
1934 4596 1.270412 TGGCAGTTATCGTTGTCCGTT 60.270 47.619 0.00 0.00 37.94 4.44
1935 4597 0.319083 TGGCAGTTATCGTTGTCCGT 59.681 50.000 0.00 0.00 37.94 4.69
1936 4598 0.719465 GTGGCAGTTATCGTTGTCCG 59.281 55.000 0.00 0.00 38.13 4.79
1941 4603 1.144969 CACGTGTGGCAGTTATCGTT 58.855 50.000 7.58 0.00 0.00 3.85
1991 4653 3.307059 GCTGGTTCTCTTAGACACCACAT 60.307 47.826 4.79 0.00 33.56 3.21
2074 4743 3.587095 CGTAGGCGTGTGAGAGGA 58.413 61.111 0.00 0.00 0.00 3.71
2185 4856 2.340328 GGTCCGGAACATGGCAACC 61.340 63.158 16.61 0.03 0.00 3.77
2195 4866 1.278127 GACATTGAAGAGGGTCCGGAA 59.722 52.381 5.23 0.00 0.00 4.30
2276 4947 4.455533 GCAACAACAGTTGAGTATCCATGA 59.544 41.667 20.56 0.00 44.15 3.07
2323 4995 2.034124 AGCTGCAGTTGTCCAAAATGT 58.966 42.857 16.64 0.00 0.00 2.71
2352 5024 9.209048 TGACAACTATAGTAAACCAGACCATAT 57.791 33.333 5.65 0.00 0.00 1.78
2430 5102 6.113411 GCAACTGTAGTAAACCAGACCATAT 58.887 40.000 0.00 0.00 32.93 1.78
2468 5140 5.541101 TGTTAGTAGGTGGCAACTTCTAAGA 59.459 40.000 25.96 22.97 37.61 2.10
2474 5146 4.020485 CCTAGTGTTAGTAGGTGGCAACTT 60.020 45.833 11.85 0.00 36.69 2.66
2590 5265 1.598407 TTGCACGGTACACGGCAAT 60.598 52.632 18.70 0.00 46.29 3.56
2666 5348 5.127031 TGTACATGACAACTGCTCTAGCATA 59.873 40.000 4.90 0.00 42.36 3.14
2668 5350 3.258123 TGTACATGACAACTGCTCTAGCA 59.742 43.478 0.00 4.32 41.55 3.49
2682 5364 4.261530 CCATGTGTTTTGCAGTGTACATGA 60.262 41.667 25.05 7.03 44.85 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.