Multiple sequence alignment - TraesCS1B01G113800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G113800 chr1B 100.000 2939 0 0 1 2939 133105121 133108059 0.000000e+00 5428.0
1 TraesCS1B01G113800 chr1B 96.403 695 22 3 2072 2763 426492752 426493446 0.000000e+00 1142.0
2 TraesCS1B01G113800 chr1B 91.296 517 43 2 1427 1942 133430125 133430640 0.000000e+00 704.0
3 TraesCS1B01G113800 chr1B 98.113 159 3 0 2781 2939 426493430 426493588 8.020000e-71 278.0
4 TraesCS1B01G113800 chr1B 90.058 171 17 0 986 1156 133429757 133429927 3.810000e-54 222.0
5 TraesCS1B01G113800 chr1D 89.075 1849 114 29 219 2027 80549179 80550979 0.000000e+00 2215.0
6 TraesCS1B01G113800 chr1D 90.135 517 49 2 1427 1942 80633821 80634336 0.000000e+00 671.0
7 TraesCS1B01G113800 chr1D 91.228 171 15 0 986 1156 80633448 80633618 1.760000e-57 233.0
8 TraesCS1B01G113800 chr1D 98.000 50 1 0 2027 2076 80553611 80553660 1.450000e-13 87.9
9 TraesCS1B01G113800 chr1A 90.663 1628 87 17 358 1939 99138349 99139957 0.000000e+00 2104.0
10 TraesCS1B01G113800 chr1A 89.307 505 52 2 1427 1930 99149113 99149616 1.490000e-177 632.0
11 TraesCS1B01G113800 chr1A 91.429 175 15 0 982 1156 99148732 99148906 1.050000e-59 241.0
12 TraesCS1B01G113800 chr1A 94.118 153 8 1 219 370 99137786 99137938 6.330000e-57 231.0
13 TraesCS1B01G113800 chr1A 84.884 172 19 5 54 220 277640313 277640144 1.810000e-37 167.0
14 TraesCS1B01G113800 chr7B 82.927 574 61 18 2388 2939 588820122 588820680 1.580000e-132 483.0
15 TraesCS1B01G113800 chr7B 92.537 268 16 4 2072 2336 589734392 589734126 5.940000e-102 381.0
16 TraesCS1B01G113800 chr7B 81.095 402 46 14 2223 2596 588874519 588874918 7.970000e-76 294.0
17 TraesCS1B01G113800 chr7B 91.515 165 9 1 2599 2763 588875031 588875190 3.810000e-54 222.0
18 TraesCS1B01G113800 chr7B 90.476 63 5 1 2781 2843 537823176 537823237 6.750000e-12 82.4
19 TraesCS1B01G113800 chr5D 86.992 369 31 9 2411 2763 289417780 289418147 1.640000e-107 399.0
20 TraesCS1B01G113800 chr5D 83.463 387 33 9 2388 2763 289724781 289725147 6.070000e-87 331.0
21 TraesCS1B01G113800 chr5D 78.528 489 59 23 2477 2939 289351803 289352271 2.230000e-71 279.0
22 TraesCS1B01G113800 chr5D 91.195 159 14 0 2781 2939 289725131 289725289 1.770000e-52 217.0
23 TraesCS1B01G113800 chr5D 84.524 168 22 3 57 221 529218331 529218165 2.340000e-36 163.0
24 TraesCS1B01G113800 chr2B 83.161 386 35 8 2388 2763 182129957 182130322 2.820000e-85 326.0
25 TraesCS1B01G113800 chr2B 82.687 387 36 12 2388 2762 135467670 135467303 6.110000e-82 315.0
26 TraesCS1B01G113800 chr2B 90.625 96 9 0 2781 2876 135467318 135467223 8.550000e-26 128.0
27 TraesCS1B01G113800 chr7D 84.400 250 17 3 2529 2763 509571553 509571795 2.950000e-55 226.0
28 TraesCS1B01G113800 chr4A 85.185 162 21 2 62 220 137967140 137966979 2.340000e-36 163.0
29 TraesCS1B01G113800 chr4A 85.185 162 21 2 62 220 137972669 137972830 2.340000e-36 163.0
30 TraesCS1B01G113800 chr4A 84.049 163 23 2 61 220 36388608 36388446 1.410000e-33 154.0
31 TraesCS1B01G113800 chr4A 83.735 166 23 3 58 220 614112313 614112477 1.410000e-33 154.0
32 TraesCS1B01G113800 chr5A 83.815 173 19 7 55 221 531233376 531233545 3.920000e-34 156.0
33 TraesCS1B01G113800 chr3B 83.832 167 23 3 57 220 787998522 787998357 3.920000e-34 156.0
34 TraesCS1B01G113800 chr3B 98.529 68 0 1 1486 1552 814770907 814770974 5.150000e-23 119.0
35 TraesCS1B01G113800 chr3B 92.308 65 5 0 1539 1603 144057691 144057627 3.120000e-15 93.5
36 TraesCS1B01G113800 chr3B 92.308 65 5 0 1539 1603 144070284 144070348 3.120000e-15 93.5
37 TraesCS1B01G113800 chr5B 82.486 177 25 5 53 225 557906143 557905969 1.820000e-32 150.0
38 TraesCS1B01G113800 chr4B 92.308 65 5 0 1539 1603 50399876 50399812 3.120000e-15 93.5
39 TraesCS1B01G113800 chr4B 92.308 65 5 0 1539 1603 50443763 50443827 3.120000e-15 93.5
40 TraesCS1B01G113800 chr4D 84.932 73 10 1 539 611 394398644 394398573 4.060000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G113800 chr1B 133105121 133108059 2938 False 5428.00 5428 100.0000 1 2939 1 chr1B.!!$F1 2938
1 TraesCS1B01G113800 chr1B 426492752 426493588 836 False 710.00 1142 97.2580 2072 2939 2 chr1B.!!$F3 867
2 TraesCS1B01G113800 chr1B 133429757 133430640 883 False 463.00 704 90.6770 986 1942 2 chr1B.!!$F2 956
3 TraesCS1B01G113800 chr1D 80549179 80553660 4481 False 1151.45 2215 93.5375 219 2076 2 chr1D.!!$F1 1857
4 TraesCS1B01G113800 chr1D 80633448 80634336 888 False 452.00 671 90.6815 986 1942 2 chr1D.!!$F2 956
5 TraesCS1B01G113800 chr1A 99137786 99139957 2171 False 1167.50 2104 92.3905 219 1939 2 chr1A.!!$F1 1720
6 TraesCS1B01G113800 chr1A 99148732 99149616 884 False 436.50 632 90.3680 982 1930 2 chr1A.!!$F2 948
7 TraesCS1B01G113800 chr7B 588820122 588820680 558 False 483.00 483 82.9270 2388 2939 1 chr7B.!!$F2 551
8 TraesCS1B01G113800 chr7B 588874519 588875190 671 False 258.00 294 86.3050 2223 2763 2 chr7B.!!$F3 540
9 TraesCS1B01G113800 chr5D 289724781 289725289 508 False 274.00 331 87.3290 2388 2939 2 chr5D.!!$F3 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 1358 0.248661 CGCTCCTGTACAGTCCGATG 60.249 60.0 21.18 5.25 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 5606 0.101399 ACCGCAAAATGAACGCAACA 59.899 45.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 8.762645 TGTATCATATCCATCATTTCTACTCCC 58.237 37.037 0.00 0.00 0.00 4.30
68 69 8.986991 GTATCATATCCATCATTTCTACTCCCT 58.013 37.037 0.00 0.00 0.00 4.20
69 70 7.487822 TCATATCCATCATTTCTACTCCCTC 57.512 40.000 0.00 0.00 0.00 4.30
70 71 6.441924 TCATATCCATCATTTCTACTCCCTCC 59.558 42.308 0.00 0.00 0.00 4.30
71 72 2.965831 TCCATCATTTCTACTCCCTCCG 59.034 50.000 0.00 0.00 0.00 4.63
72 73 2.700897 CCATCATTTCTACTCCCTCCGT 59.299 50.000 0.00 0.00 0.00 4.69
73 74 3.134804 CCATCATTTCTACTCCCTCCGTT 59.865 47.826 0.00 0.00 0.00 4.44
74 75 4.372656 CATCATTTCTACTCCCTCCGTTC 58.627 47.826 0.00 0.00 0.00 3.95
75 76 2.764572 TCATTTCTACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
76 77 2.617840 TTTCTACTCCCTCCGTTCCT 57.382 50.000 0.00 0.00 0.00 3.36
77 78 3.744940 TTTCTACTCCCTCCGTTCCTA 57.255 47.619 0.00 0.00 0.00 2.94
78 79 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
79 80 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
80 81 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
81 82 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
82 83 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
83 84 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
84 85 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
85 86 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
86 87 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
87 88 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
88 89 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
89 90 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
90 91 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
91 92 6.313164 CCTCCGTTCCTAAATACAAGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
92 93 7.001099 TCCGTTCCTAAATACAAGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
93 94 8.125978 TCCGTTCCTAAATACAAGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
94 95 8.248945 TCCGTTCCTAAATACAAGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
95 96 8.248945 CCGTTCCTAAATACAAGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
96 97 9.291664 CGTTCCTAAATACAAGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
106 107 7.496747 ACAAGTCTTTCTAGAGATTCCTATGC 58.503 38.462 0.00 0.00 0.00 3.14
107 108 6.325919 AGTCTTTCTAGAGATTCCTATGCG 57.674 41.667 0.00 0.00 0.00 4.73
108 109 6.065374 AGTCTTTCTAGAGATTCCTATGCGA 58.935 40.000 0.00 0.00 0.00 5.10
109 110 6.547880 AGTCTTTCTAGAGATTCCTATGCGAA 59.452 38.462 0.00 0.00 0.00 4.70
110 111 7.232534 AGTCTTTCTAGAGATTCCTATGCGAAT 59.767 37.037 0.00 0.00 35.14 3.34
111 112 7.870445 GTCTTTCTAGAGATTCCTATGCGAATT 59.130 37.037 0.00 0.00 32.56 2.17
112 113 9.078990 TCTTTCTAGAGATTCCTATGCGAATTA 57.921 33.333 0.00 0.00 32.56 1.40
113 114 9.868277 CTTTCTAGAGATTCCTATGCGAATTAT 57.132 33.333 0.00 0.00 32.56 1.28
119 120 9.121658 AGAGATTCCTATGCGAATTATATACGA 57.878 33.333 0.00 0.00 32.56 3.43
120 121 9.731819 GAGATTCCTATGCGAATTATATACGAA 57.268 33.333 0.00 0.00 32.56 3.85
121 122 9.737427 AGATTCCTATGCGAATTATATACGAAG 57.263 33.333 0.00 0.00 32.56 3.79
122 123 7.751047 TTCCTATGCGAATTATATACGAAGC 57.249 36.000 0.00 0.00 0.00 3.86
123 124 6.859017 TCCTATGCGAATTATATACGAAGCA 58.141 36.000 0.00 5.10 37.77 3.91
124 125 7.317390 TCCTATGCGAATTATATACGAAGCAA 58.683 34.615 0.00 0.00 36.92 3.91
125 126 7.815549 TCCTATGCGAATTATATACGAAGCAAA 59.184 33.333 0.00 0.00 36.92 3.68
126 127 8.440059 CCTATGCGAATTATATACGAAGCAAAA 58.560 33.333 0.00 0.05 36.92 2.44
127 128 9.973246 CTATGCGAATTATATACGAAGCAAAAT 57.027 29.630 0.00 0.00 36.92 1.82
130 131 9.805966 TGCGAATTATATACGAAGCAAAATAAG 57.194 29.630 0.00 0.00 0.00 1.73
131 132 9.807386 GCGAATTATATACGAAGCAAAATAAGT 57.193 29.630 0.00 0.00 0.00 2.24
140 141 7.667043 ACGAAGCAAAATAAGTGAATCTACA 57.333 32.000 0.00 0.00 0.00 2.74
141 142 7.519002 ACGAAGCAAAATAAGTGAATCTACAC 58.481 34.615 0.00 0.00 40.60 2.90
337 338 8.785946 CATGCATTATATACATGTGGAAGTTCA 58.214 33.333 9.11 0.00 37.10 3.18
411 836 1.529244 AAGATGCTATTGCCGGCCC 60.529 57.895 26.77 7.60 38.71 5.80
413 838 2.203394 ATGCTATTGCCGGCCCTG 60.203 61.111 26.77 12.68 38.71 4.45
427 852 1.335132 GCCCTGATCCCCGTAAGTGA 61.335 60.000 0.00 0.00 0.00 3.41
445 870 7.693120 CGTAAGTGAGTTCTCATACAAGTCTAC 59.307 40.741 5.80 0.51 0.00 2.59
463 891 6.534634 AGTCTACTTGTAGGTTCAAATTGCT 58.465 36.000 7.81 0.00 0.00 3.91
464 892 6.998673 AGTCTACTTGTAGGTTCAAATTGCTT 59.001 34.615 7.81 0.00 0.00 3.91
473 901 5.308014 AGGTTCAAATTGCTTCCCAAATTC 58.692 37.500 0.00 0.00 36.92 2.17
477 905 4.280677 TCAAATTGCTTCCCAAATTCGTCT 59.719 37.500 0.00 0.00 36.92 4.18
481 909 3.009723 TGCTTCCCAAATTCGTCTGATC 58.990 45.455 0.00 0.00 0.00 2.92
483 911 3.064545 GCTTCCCAAATTCGTCTGATCTG 59.935 47.826 0.00 0.00 0.00 2.90
489 917 6.371548 TCCCAAATTCGTCTGATCTGTTTAAG 59.628 38.462 0.00 0.00 0.00 1.85
522 950 4.569180 CTTGGATGGCCGCCGGAT 62.569 66.667 7.68 0.00 36.79 4.18
523 951 4.873810 TTGGATGGCCGCCGGATG 62.874 66.667 7.68 0.00 36.79 3.51
526 954 2.665185 GATGGCCGCCGGATGTAC 60.665 66.667 7.68 0.00 0.00 2.90
527 955 3.454587 GATGGCCGCCGGATGTACA 62.455 63.158 7.68 0.00 0.00 2.90
530 958 2.972505 GCCGCCGGATGTACATGG 60.973 66.667 14.43 10.49 0.00 3.66
531 959 2.280797 CCGCCGGATGTACATGGG 60.281 66.667 14.43 14.93 0.00 4.00
545 973 4.411869 TGTACATGGGATAGCTTTGGATGA 59.588 41.667 0.00 0.00 0.00 2.92
570 998 1.336440 CTTCCGCATTGGTGTTTGTGA 59.664 47.619 0.00 0.00 39.52 3.58
599 1027 3.690280 TGTCTGCGGACGGATGCA 61.690 61.111 20.49 0.00 44.83 3.96
615 1043 1.891919 GCAGTGTCTGGTTTGCGGA 60.892 57.895 0.00 0.00 31.21 5.54
616 1044 1.444119 GCAGTGTCTGGTTTGCGGAA 61.444 55.000 0.00 0.00 31.21 4.30
619 1047 0.736053 GTGTCTGGTTTGCGGAACAA 59.264 50.000 0.00 0.00 40.13 2.83
622 1050 0.745128 TCTGGTTTGCGGAACAACGT 60.745 50.000 0.00 0.00 40.13 3.99
627 1055 2.224784 GGTTTGCGGAACAACGTTAGAT 59.775 45.455 0.00 0.00 40.13 1.98
653 1081 1.612442 CGGGAGGGTGAGGGAGAAA 60.612 63.158 0.00 0.00 0.00 2.52
700 1128 1.690845 CCAGCAGGGGAGACATAGTCT 60.691 57.143 0.00 0.00 46.42 3.24
713 1141 6.588373 GGAGACATAGTCTTTGACTCTTGAAC 59.412 42.308 17.28 3.07 43.53 3.18
739 1167 2.919043 CCTATGACAGTGGGGCCC 59.081 66.667 18.17 18.17 0.00 5.80
757 1185 2.036256 ATGCAAGCTGGGTGGTCC 59.964 61.111 0.00 0.00 0.00 4.46
863 1297 0.977395 CCGTTCTCCTTCCTCACCTT 59.023 55.000 0.00 0.00 0.00 3.50
871 1305 1.981495 CCTTCCTCACCTTTGACCTCT 59.019 52.381 0.00 0.00 0.00 3.69
872 1306 2.027653 CCTTCCTCACCTTTGACCTCTC 60.028 54.545 0.00 0.00 0.00 3.20
873 1307 2.704190 TCCTCACCTTTGACCTCTCT 57.296 50.000 0.00 0.00 0.00 3.10
874 1308 2.530701 TCCTCACCTTTGACCTCTCTC 58.469 52.381 0.00 0.00 0.00 3.20
875 1309 2.158310 TCCTCACCTTTGACCTCTCTCA 60.158 50.000 0.00 0.00 0.00 3.27
876 1310 2.233431 CCTCACCTTTGACCTCTCTCAG 59.767 54.545 0.00 0.00 0.00 3.35
877 1311 1.620819 TCACCTTTGACCTCTCTCAGC 59.379 52.381 0.00 0.00 0.00 4.26
878 1312 1.622811 CACCTTTGACCTCTCTCAGCT 59.377 52.381 0.00 0.00 0.00 4.24
879 1313 1.622811 ACCTTTGACCTCTCTCAGCTG 59.377 52.381 7.63 7.63 0.00 4.24
880 1314 1.675415 CCTTTGACCTCTCTCAGCTGC 60.675 57.143 9.47 0.00 0.00 5.25
881 1315 1.275856 CTTTGACCTCTCTCAGCTGCT 59.724 52.381 9.47 0.00 0.00 4.24
882 1316 0.894141 TTGACCTCTCTCAGCTGCTC 59.106 55.000 9.47 0.00 0.00 4.26
883 1317 0.969917 TGACCTCTCTCAGCTGCTCC 60.970 60.000 9.47 0.00 0.00 4.70
884 1318 1.675720 GACCTCTCTCAGCTGCTCCC 61.676 65.000 9.47 0.00 0.00 4.30
885 1319 1.685077 CCTCTCTCAGCTGCTCCCA 60.685 63.158 9.47 0.00 0.00 4.37
886 1320 1.678598 CCTCTCTCAGCTGCTCCCAG 61.679 65.000 9.47 0.15 42.13 4.45
887 1321 0.971959 CTCTCTCAGCTGCTCCCAGT 60.972 60.000 9.47 0.00 41.26 4.00
890 1324 1.078567 CTCAGCTGCTCCCAGTTCC 60.079 63.158 9.47 0.00 41.26 3.62
909 1358 0.248661 CGCTCCTGTACAGTCCGATG 60.249 60.000 21.18 5.25 0.00 3.84
919 1368 1.000163 ACAGTCCGATGCTTATAGGCG 60.000 52.381 2.06 0.00 34.52 5.52
934 1383 1.257743 AGGCGTCAGAAACAGAGCTA 58.742 50.000 0.00 0.00 0.00 3.32
966 1422 3.283259 ACAGAGCCTGCTAAATTACCC 57.717 47.619 0.00 0.00 34.37 3.69
968 1424 1.141053 AGAGCCTGCTAAATTACCCCG 59.859 52.381 0.00 0.00 0.00 5.73
969 1425 1.140252 GAGCCTGCTAAATTACCCCGA 59.860 52.381 0.00 0.00 0.00 5.14
970 1426 1.562475 AGCCTGCTAAATTACCCCGAA 59.438 47.619 0.00 0.00 0.00 4.30
971 1427 1.947456 GCCTGCTAAATTACCCCGAAG 59.053 52.381 0.00 0.00 0.00 3.79
972 1428 2.420967 GCCTGCTAAATTACCCCGAAGA 60.421 50.000 0.00 0.00 0.00 2.87
973 1429 3.467803 CCTGCTAAATTACCCCGAAGAG 58.532 50.000 0.00 0.00 0.00 2.85
974 1430 3.134081 CCTGCTAAATTACCCCGAAGAGA 59.866 47.826 0.00 0.00 0.00 3.10
975 1431 4.372656 CTGCTAAATTACCCCGAAGAGAG 58.627 47.826 0.00 0.00 0.00 3.20
976 1432 4.028131 TGCTAAATTACCCCGAAGAGAGA 58.972 43.478 0.00 0.00 0.00 3.10
977 1433 4.099573 TGCTAAATTACCCCGAAGAGAGAG 59.900 45.833 0.00 0.00 0.00 3.20
1175 1631 1.589113 GTCGGTTCTGCTGAGCTCT 59.411 57.895 16.19 0.00 32.20 4.09
1195 1651 0.250901 ACCATCAACCACAGCACTCC 60.251 55.000 0.00 0.00 0.00 3.85
1203 1659 0.976641 CCACAGCACTCCACCTTCTA 59.023 55.000 0.00 0.00 0.00 2.10
1204 1660 1.338200 CCACAGCACTCCACCTTCTAC 60.338 57.143 0.00 0.00 0.00 2.59
1208 1671 3.136626 ACAGCACTCCACCTTCTACTTTT 59.863 43.478 0.00 0.00 0.00 2.27
1209 1672 4.137543 CAGCACTCCACCTTCTACTTTTT 58.862 43.478 0.00 0.00 0.00 1.94
1523 2019 2.956964 CAGCGCGACCGATCTTCC 60.957 66.667 12.10 0.00 36.29 3.46
1808 2304 3.797353 CTACCTGGTGGCCGGCAT 61.797 66.667 30.85 6.38 36.63 4.40
2005 2501 3.802675 GCTTGGTCTTCGTCTGGTAAACT 60.803 47.826 0.00 0.00 0.00 2.66
2056 5184 7.450074 TGTGTCTCCATTGAGTTTTATACTGT 58.550 34.615 0.00 0.00 39.75 3.55
2088 5216 4.431416 TGACCCACAAGTGTTCACTTAT 57.569 40.909 16.23 4.38 0.00 1.73
2144 5272 4.925646 GGTTGGCATCAAAAGATTCTGAAC 59.074 41.667 0.00 0.00 34.28 3.18
2238 5366 6.426328 CACATATAGATGGAGAAAAGCTCACC 59.574 42.308 1.85 0.00 45.81 4.02
2285 5413 4.105697 GGAAATCCCCACATATAGTTCCCA 59.894 45.833 0.00 0.00 31.57 4.37
2347 5477 8.561738 TTTCTCCCTGTAATGTATCAAGTTTC 57.438 34.615 0.00 0.00 0.00 2.78
2380 5513 3.064820 GGTTGGGTAGTTGATACATTGCG 59.935 47.826 0.00 0.00 35.96 4.85
2447 5606 6.384305 AGAAATCTATACCACCTGCTTGTAGT 59.616 38.462 0.00 0.00 0.00 2.73
2448 5607 5.537300 ATCTATACCACCTGCTTGTAGTG 57.463 43.478 0.00 0.00 0.00 2.74
2452 5611 0.593128 CCACCTGCTTGTAGTGTTGC 59.407 55.000 0.00 0.00 0.00 4.17
2518 5678 5.290386 CCTATGACCCTGTTAATCTTCGAC 58.710 45.833 0.00 0.00 0.00 4.20
2581 5741 9.713684 AATAATGGTTTCTGATTTCTATTGGGA 57.286 29.630 0.00 0.00 0.00 4.37
2666 5937 6.651225 GCAACTACAGGTCTTAACTCTTGAAT 59.349 38.462 0.00 0.00 0.00 2.57
2763 6034 5.705397 TGATTGATCCAGGTGAGATTCTT 57.295 39.130 0.00 0.00 0.00 2.52
2764 6035 6.070951 TGATTGATCCAGGTGAGATTCTTT 57.929 37.500 0.00 0.00 0.00 2.52
2765 6036 6.487828 TGATTGATCCAGGTGAGATTCTTTT 58.512 36.000 0.00 0.00 0.00 2.27
2766 6037 6.950041 TGATTGATCCAGGTGAGATTCTTTTT 59.050 34.615 0.00 0.00 0.00 1.94
2787 6058 3.894742 TTTTTGCGGGGGATCTAGG 57.105 52.632 0.00 0.00 0.00 3.02
2788 6059 0.996583 TTTTTGCGGGGGATCTAGGT 59.003 50.000 0.00 0.00 0.00 3.08
2789 6060 0.254747 TTTTGCGGGGGATCTAGGTG 59.745 55.000 0.00 0.00 0.00 4.00
2790 6061 0.619255 TTTGCGGGGGATCTAGGTGA 60.619 55.000 0.00 0.00 0.00 4.02
2791 6062 1.048724 TTGCGGGGGATCTAGGTGAG 61.049 60.000 0.00 0.00 0.00 3.51
2792 6063 1.152525 GCGGGGGATCTAGGTGAGA 60.153 63.158 0.00 0.00 39.01 3.27
2794 6065 2.016905 CGGGGGATCTAGGTGAGATT 57.983 55.000 0.00 0.00 45.48 2.40
2795 6066 1.896465 CGGGGGATCTAGGTGAGATTC 59.104 57.143 0.00 0.00 45.48 2.52
2796 6067 2.491825 CGGGGGATCTAGGTGAGATTCT 60.492 54.545 0.00 0.00 45.48 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.762645 GGGAGTAGAAATGATGGATATGATACA 58.237 37.037 0.00 0.00 0.00 2.29
42 43 8.986991 AGGGAGTAGAAATGATGGATATGATAC 58.013 37.037 0.00 0.00 0.00 2.24
43 44 9.206690 GAGGGAGTAGAAATGATGGATATGATA 57.793 37.037 0.00 0.00 0.00 2.15
44 45 7.127032 GGAGGGAGTAGAAATGATGGATATGAT 59.873 40.741 0.00 0.00 0.00 2.45
45 46 6.441924 GGAGGGAGTAGAAATGATGGATATGA 59.558 42.308 0.00 0.00 0.00 2.15
46 47 6.629068 CGGAGGGAGTAGAAATGATGGATATG 60.629 46.154 0.00 0.00 0.00 1.78
47 48 5.423610 CGGAGGGAGTAGAAATGATGGATAT 59.576 44.000 0.00 0.00 0.00 1.63
48 49 4.772624 CGGAGGGAGTAGAAATGATGGATA 59.227 45.833 0.00 0.00 0.00 2.59
49 50 3.580458 CGGAGGGAGTAGAAATGATGGAT 59.420 47.826 0.00 0.00 0.00 3.41
50 51 2.965831 CGGAGGGAGTAGAAATGATGGA 59.034 50.000 0.00 0.00 0.00 3.41
51 52 2.700897 ACGGAGGGAGTAGAAATGATGG 59.299 50.000 0.00 0.00 0.00 3.51
52 53 4.372656 GAACGGAGGGAGTAGAAATGATG 58.627 47.826 0.00 0.00 0.00 3.07
53 54 3.388350 GGAACGGAGGGAGTAGAAATGAT 59.612 47.826 0.00 0.00 0.00 2.45
54 55 2.764572 GGAACGGAGGGAGTAGAAATGA 59.235 50.000 0.00 0.00 0.00 2.57
55 56 2.766828 AGGAACGGAGGGAGTAGAAATG 59.233 50.000 0.00 0.00 0.00 2.32
56 57 3.117552 AGGAACGGAGGGAGTAGAAAT 57.882 47.619 0.00 0.00 0.00 2.17
57 58 2.617840 AGGAACGGAGGGAGTAGAAA 57.382 50.000 0.00 0.00 0.00 2.52
58 59 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
59 60 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
60 61 4.891756 TGTATTTAGGAACGGAGGGAGTAG 59.108 45.833 0.00 0.00 0.00 2.57
61 62 4.870636 TGTATTTAGGAACGGAGGGAGTA 58.129 43.478 0.00 0.00 0.00 2.59
62 63 3.716431 TGTATTTAGGAACGGAGGGAGT 58.284 45.455 0.00 0.00 0.00 3.85
63 64 4.161754 ACTTGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
64 65 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
65 66 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
66 67 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
67 68 7.097834 AGAAAGACTTGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
68 69 7.001099 AGAAAGACTTGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
69 70 8.248945 TCTAGAAAGACTTGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
70 71 9.291664 CTCTAGAAAGACTTGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
80 81 8.634444 GCATAGGAATCTCTAGAAAGACTTGTA 58.366 37.037 0.00 0.00 0.00 2.41
81 82 7.496747 GCATAGGAATCTCTAGAAAGACTTGT 58.503 38.462 0.00 0.00 0.00 3.16
82 83 6.640499 CGCATAGGAATCTCTAGAAAGACTTG 59.360 42.308 0.00 0.00 0.00 3.16
83 84 6.547880 TCGCATAGGAATCTCTAGAAAGACTT 59.452 38.462 0.00 0.00 0.00 3.01
84 85 6.065374 TCGCATAGGAATCTCTAGAAAGACT 58.935 40.000 0.00 0.00 0.00 3.24
85 86 6.320494 TCGCATAGGAATCTCTAGAAAGAC 57.680 41.667 0.00 0.00 0.00 3.01
86 87 6.961360 TTCGCATAGGAATCTCTAGAAAGA 57.039 37.500 0.00 0.00 0.00 2.52
87 88 9.868277 ATAATTCGCATAGGAATCTCTAGAAAG 57.132 33.333 0.00 0.00 35.65 2.62
93 94 9.121658 TCGTATATAATTCGCATAGGAATCTCT 57.878 33.333 0.00 0.00 35.65 3.10
94 95 9.731819 TTCGTATATAATTCGCATAGGAATCTC 57.268 33.333 0.00 0.00 35.65 2.75
95 96 9.737427 CTTCGTATATAATTCGCATAGGAATCT 57.263 33.333 8.34 0.00 35.65 2.40
96 97 8.480853 GCTTCGTATATAATTCGCATAGGAATC 58.519 37.037 8.34 3.79 35.65 2.52
97 98 7.979537 TGCTTCGTATATAATTCGCATAGGAAT 59.020 33.333 8.34 0.00 38.24 3.01
98 99 7.317390 TGCTTCGTATATAATTCGCATAGGAA 58.683 34.615 0.00 0.00 31.71 3.36
99 100 6.859017 TGCTTCGTATATAATTCGCATAGGA 58.141 36.000 0.00 0.00 0.00 2.94
100 101 7.520119 TTGCTTCGTATATAATTCGCATAGG 57.480 36.000 0.00 0.00 0.00 2.57
101 102 9.973246 ATTTTGCTTCGTATATAATTCGCATAG 57.027 29.630 0.00 0.00 0.00 2.23
104 105 9.805966 CTTATTTTGCTTCGTATATAATTCGCA 57.194 29.630 0.00 0.00 0.00 5.10
105 106 9.807386 ACTTATTTTGCTTCGTATATAATTCGC 57.193 29.630 0.00 0.00 0.00 4.70
114 115 9.378551 TGTAGATTCACTTATTTTGCTTCGTAT 57.621 29.630 0.00 0.00 0.00 3.06
115 116 8.653338 GTGTAGATTCACTTATTTTGCTTCGTA 58.347 33.333 0.00 0.00 35.68 3.43
116 117 7.387948 AGTGTAGATTCACTTATTTTGCTTCGT 59.612 33.333 0.00 0.00 44.92 3.85
117 118 7.743104 AGTGTAGATTCACTTATTTTGCTTCG 58.257 34.615 0.00 0.00 44.92 3.79
200 201 4.991472 AGATACTTCGTCCGTTCCTAAAC 58.009 43.478 0.00 0.00 0.00 2.01
201 202 5.649782 AAGATACTTCGTCCGTTCCTAAA 57.350 39.130 0.00 0.00 0.00 1.85
202 203 6.949352 ATAAGATACTTCGTCCGTTCCTAA 57.051 37.500 0.00 0.00 0.00 2.69
203 204 7.220030 ACTATAAGATACTTCGTCCGTTCCTA 58.780 38.462 0.00 0.00 0.00 2.94
204 205 6.060788 ACTATAAGATACTTCGTCCGTTCCT 58.939 40.000 0.00 0.00 0.00 3.36
205 206 6.017605 TGACTATAAGATACTTCGTCCGTTCC 60.018 42.308 0.00 0.00 0.00 3.62
206 207 6.850317 GTGACTATAAGATACTTCGTCCGTTC 59.150 42.308 0.00 0.00 0.00 3.95
207 208 6.317140 TGTGACTATAAGATACTTCGTCCGTT 59.683 38.462 0.00 0.00 0.00 4.44
208 209 5.819379 TGTGACTATAAGATACTTCGTCCGT 59.181 40.000 0.00 0.00 0.00 4.69
209 210 6.296365 TGTGACTATAAGATACTTCGTCCG 57.704 41.667 0.00 0.00 0.00 4.79
210 211 8.781196 TGTATGTGACTATAAGATACTTCGTCC 58.219 37.037 0.00 0.00 0.00 4.79
211 212 9.814507 CTGTATGTGACTATAAGATACTTCGTC 57.185 37.037 0.00 0.00 0.00 4.20
212 213 9.557061 TCTGTATGTGACTATAAGATACTTCGT 57.443 33.333 0.00 0.00 0.00 3.85
337 338 7.166167 ACCCGACACTTAATGAGTTAAAAGAT 58.834 34.615 0.00 0.00 36.10 2.40
345 346 2.253610 TGGACCCGACACTTAATGAGT 58.746 47.619 0.00 0.00 39.89 3.41
374 799 2.603075 TGAAGGGCCTAGTGCAAATT 57.397 45.000 6.41 0.00 43.89 1.82
411 836 2.761208 AGAACTCACTTACGGGGATCAG 59.239 50.000 0.00 0.00 0.00 2.90
413 838 2.758979 TGAGAACTCACTTACGGGGATC 59.241 50.000 0.00 0.00 34.14 3.36
445 870 4.280677 TGGGAAGCAATTTGAACCTACAAG 59.719 41.667 0.00 0.00 0.00 3.16
463 891 4.286297 ACAGATCAGACGAATTTGGGAA 57.714 40.909 0.00 0.00 0.00 3.97
464 892 3.981071 ACAGATCAGACGAATTTGGGA 57.019 42.857 0.00 0.00 0.00 4.37
473 901 9.952188 TTGATAGATACTTAAACAGATCAGACG 57.048 33.333 0.00 0.00 0.00 4.18
489 917 6.865205 GCCATCCAAGCAAATTTGATAGATAC 59.135 38.462 22.31 12.20 0.00 2.24
505 933 4.569180 ATCCGGCGGCCATCCAAG 62.569 66.667 23.83 0.62 0.00 3.61
522 950 4.411869 TCATCCAAAGCTATCCCATGTACA 59.588 41.667 0.00 0.00 0.00 2.90
523 951 4.757149 GTCATCCAAAGCTATCCCATGTAC 59.243 45.833 0.00 0.00 0.00 2.90
526 954 3.152341 GGTCATCCAAAGCTATCCCATG 58.848 50.000 0.00 0.00 0.00 3.66
527 955 2.224621 CGGTCATCCAAAGCTATCCCAT 60.225 50.000 0.00 0.00 0.00 4.00
530 958 1.884235 CCGGTCATCCAAAGCTATCC 58.116 55.000 0.00 0.00 0.00 2.59
531 959 1.202698 AGCCGGTCATCCAAAGCTATC 60.203 52.381 1.90 0.00 34.09 2.08
570 998 0.036010 CGCAGACAGAGGGACCAATT 60.036 55.000 0.00 0.00 0.00 2.32
599 1027 0.107410 TGTTCCGCAAACCAGACACT 60.107 50.000 0.00 0.00 37.03 3.55
615 1043 3.454375 CGAGGGCATATCTAACGTTGTT 58.546 45.455 11.99 0.00 0.00 2.83
616 1044 2.223971 CCGAGGGCATATCTAACGTTGT 60.224 50.000 11.99 0.00 0.00 3.32
619 1047 0.966920 CCCGAGGGCATATCTAACGT 59.033 55.000 0.00 0.00 0.00 3.99
622 1050 1.938585 CCTCCCGAGGGCATATCTAA 58.061 55.000 2.58 0.00 44.87 2.10
653 1081 2.290134 GGTCCCGCTTCCTAAAGTCTTT 60.290 50.000 2.81 2.81 34.79 2.52
700 1128 3.278574 CACACCCTGTTCAAGAGTCAAA 58.721 45.455 0.00 0.00 0.00 2.69
713 1141 0.615331 ACTGTCATAGGCACACCCTG 59.385 55.000 0.00 0.00 45.91 4.45
739 1167 2.345760 GGACCACCCAGCTTGCATG 61.346 63.158 0.00 0.00 34.14 4.06
757 1185 2.332654 ACGGCGCCCTTTTAGCAAG 61.333 57.895 23.46 4.79 0.00 4.01
786 1214 7.568349 AGCTAATCAGATTTCTCATACACCAA 58.432 34.615 0.00 0.00 0.00 3.67
863 1297 0.894141 GAGCAGCTGAGAGAGGTCAA 59.106 55.000 20.43 0.00 0.00 3.18
871 1305 1.548357 GGAACTGGGAGCAGCTGAGA 61.548 60.000 20.43 0.00 0.00 3.27
872 1306 1.078567 GGAACTGGGAGCAGCTGAG 60.079 63.158 20.43 7.96 0.00 3.35
873 1307 2.947532 CGGAACTGGGAGCAGCTGA 61.948 63.158 20.43 0.00 0.00 4.26
874 1308 2.435586 CGGAACTGGGAGCAGCTG 60.436 66.667 10.11 10.11 0.00 4.24
875 1309 4.400961 GCGGAACTGGGAGCAGCT 62.401 66.667 0.00 0.00 0.00 4.24
876 1310 4.400961 AGCGGAACTGGGAGCAGC 62.401 66.667 0.00 0.00 0.00 5.25
877 1311 2.125350 GAGCGGAACTGGGAGCAG 60.125 66.667 0.00 0.00 0.00 4.24
878 1312 3.706373 GGAGCGGAACTGGGAGCA 61.706 66.667 0.00 0.00 0.00 4.26
879 1313 3.394836 AGGAGCGGAACTGGGAGC 61.395 66.667 0.00 0.00 0.00 4.70
880 1314 0.970937 TACAGGAGCGGAACTGGGAG 60.971 60.000 0.00 0.00 39.00 4.30
881 1315 1.077805 TACAGGAGCGGAACTGGGA 59.922 57.895 0.00 0.00 39.00 4.37
882 1316 1.218316 GTACAGGAGCGGAACTGGG 59.782 63.158 0.00 0.00 39.00 4.45
883 1317 0.108615 CTGTACAGGAGCGGAACTGG 60.109 60.000 15.49 0.00 39.00 4.00
884 1318 0.603569 ACTGTACAGGAGCGGAACTG 59.396 55.000 26.12 0.00 40.48 3.16
885 1319 0.889306 GACTGTACAGGAGCGGAACT 59.111 55.000 26.12 2.07 0.00 3.01
886 1320 0.108756 GGACTGTACAGGAGCGGAAC 60.109 60.000 26.12 7.26 0.00 3.62
887 1321 1.592400 CGGACTGTACAGGAGCGGAA 61.592 60.000 26.12 0.00 0.00 4.30
890 1324 0.248661 CATCGGACTGTACAGGAGCG 60.249 60.000 26.12 11.37 0.00 5.03
909 1358 3.782046 TCTGTTTCTGACGCCTATAAGC 58.218 45.455 0.00 0.00 0.00 3.09
966 1422 3.384789 TCTCTCTCTCTCTCTCTCTTCGG 59.615 52.174 0.00 0.00 0.00 4.30
968 1424 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
969 1425 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
970 1426 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
971 1427 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
972 1428 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
973 1429 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
974 1430 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
975 1431 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
976 1432 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
977 1433 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1175 1631 1.003118 GGAGTGCTGTGGTTGATGGTA 59.997 52.381 0.00 0.00 0.00 3.25
1195 1651 5.293569 ACTTGTCACGAAAAAGTAGAAGGTG 59.706 40.000 0.00 0.00 32.48 4.00
1203 1659 8.205131 AGTAATAACACTTGTCACGAAAAAGT 57.795 30.769 0.00 0.00 34.52 2.66
1204 1660 8.332464 TGAGTAATAACACTTGTCACGAAAAAG 58.668 33.333 0.00 0.00 0.00 2.27
1208 1671 5.924254 CCTGAGTAATAACACTTGTCACGAA 59.076 40.000 0.00 0.00 0.00 3.85
1209 1672 5.010314 ACCTGAGTAATAACACTTGTCACGA 59.990 40.000 0.00 0.00 0.00 4.35
1492 1979 2.184579 GCTGGTGCCTCCGTACTC 59.815 66.667 0.00 0.00 39.52 2.59
1512 2008 2.485657 GGATTCCCTTGGAAGATCGGTC 60.486 54.545 1.64 0.00 45.48 4.79
1523 2019 0.253044 TTCGAGGCTGGATTCCCTTG 59.747 55.000 0.00 0.00 34.49 3.61
1683 2179 0.108424 CGAGGACCTTCTCCAGCTTG 60.108 60.000 0.00 0.00 42.46 4.01
1740 2236 1.293498 GCTGAAGAAGTCTCCGGCA 59.707 57.895 0.00 0.00 0.00 5.69
1771 2267 3.288964 AGTAGGTGATACCGAAGTGGAG 58.711 50.000 0.00 0.00 44.90 3.86
1808 2304 4.806481 GCAGCGTCGCGTACTCGA 62.806 66.667 12.30 3.36 39.71 4.04
2056 5184 3.137544 ACTTGTGGGTCAATACACCAAGA 59.862 43.478 12.75 0.00 38.53 3.02
2088 5216 5.417894 ACAGTTGGTGATCTTGTACGAGATA 59.582 40.000 23.08 7.32 36.54 1.98
2144 5272 3.562973 AGAAATCAGATAATGCTGCACGG 59.437 43.478 3.57 0.00 35.86 4.94
2238 5366 3.314763 TCGATACGAGTTCTACTTGCG 57.685 47.619 0.00 0.00 32.76 4.85
2285 5413 8.358582 ACTCATTAGATCTTGCAAAGGAAAAT 57.641 30.769 0.00 0.00 46.24 1.82
2347 5477 1.405105 CTACCCAACCAAATGCATCGG 59.595 52.381 12.45 12.45 0.00 4.18
2380 5513 1.673920 TGCAAGGAAAACTCAACCGAC 59.326 47.619 0.00 0.00 0.00 4.79
2447 5606 0.101399 ACCGCAAAATGAACGCAACA 59.899 45.000 0.00 0.00 0.00 3.33
2448 5607 0.502275 CACCGCAAAATGAACGCAAC 59.498 50.000 0.00 0.00 0.00 4.17
2452 5611 0.317770 AGCACACCGCAAAATGAACG 60.318 50.000 0.00 0.00 46.13 3.95
2518 5678 8.331022 CAACCTGTCATGTTAGATTATCTTTCG 58.669 37.037 0.00 0.00 0.00 3.46
2666 5937 1.532437 CGACAAGCAGCAATCACAGAA 59.468 47.619 0.00 0.00 0.00 3.02
2769 6040 0.996583 ACCTAGATCCCCCGCAAAAA 59.003 50.000 0.00 0.00 0.00 1.94
2770 6041 0.254747 CACCTAGATCCCCCGCAAAA 59.745 55.000 0.00 0.00 0.00 2.44
2771 6042 0.619255 TCACCTAGATCCCCCGCAAA 60.619 55.000 0.00 0.00 0.00 3.68
2772 6043 1.002403 TCACCTAGATCCCCCGCAA 59.998 57.895 0.00 0.00 0.00 4.85
2773 6044 1.457643 CTCACCTAGATCCCCCGCA 60.458 63.158 0.00 0.00 0.00 5.69
2774 6045 0.543174 ATCTCACCTAGATCCCCCGC 60.543 60.000 0.00 0.00 41.32 6.13
2775 6046 1.896465 GAATCTCACCTAGATCCCCCG 59.104 57.143 0.00 0.00 44.56 5.73
2776 6047 2.903135 CAGAATCTCACCTAGATCCCCC 59.097 54.545 0.00 0.00 44.56 5.40
2777 6048 3.831911 CTCAGAATCTCACCTAGATCCCC 59.168 52.174 0.00 0.00 44.56 4.81
2778 6049 4.735369 TCTCAGAATCTCACCTAGATCCC 58.265 47.826 0.00 0.00 44.56 3.85
2779 6050 6.009589 TGATCTCAGAATCTCACCTAGATCC 58.990 44.000 0.00 0.00 44.56 3.36
2780 6051 6.716628 AGTGATCTCAGAATCTCACCTAGATC 59.283 42.308 3.65 0.00 44.56 2.75
2782 6053 6.012337 AGTGATCTCAGAATCTCACCTAGA 57.988 41.667 3.65 0.00 39.00 2.43
2783 6054 8.408043 AATAGTGATCTCAGAATCTCACCTAG 57.592 38.462 3.65 0.00 39.00 3.02
2784 6055 8.224025 AGAATAGTGATCTCAGAATCTCACCTA 58.776 37.037 3.65 0.00 39.00 3.08
2785 6056 7.014518 CAGAATAGTGATCTCAGAATCTCACCT 59.985 40.741 3.65 0.00 39.00 4.00
2786 6057 7.147312 CAGAATAGTGATCTCAGAATCTCACC 58.853 42.308 3.65 0.00 39.00 4.02
2787 6058 6.642131 GCAGAATAGTGATCTCAGAATCTCAC 59.358 42.308 0.00 0.00 38.59 3.51
2788 6059 6.323225 TGCAGAATAGTGATCTCAGAATCTCA 59.677 38.462 0.00 0.00 0.00 3.27
2789 6060 6.747125 TGCAGAATAGTGATCTCAGAATCTC 58.253 40.000 0.00 0.00 0.00 2.75
2790 6061 6.728089 TGCAGAATAGTGATCTCAGAATCT 57.272 37.500 0.00 0.00 0.00 2.40
2791 6062 6.930164 ACATGCAGAATAGTGATCTCAGAATC 59.070 38.462 0.00 0.00 0.00 2.52
2792 6063 6.828788 ACATGCAGAATAGTGATCTCAGAAT 58.171 36.000 0.00 0.00 0.00 2.40
2793 6064 6.231258 ACATGCAGAATAGTGATCTCAGAA 57.769 37.500 0.00 0.00 0.00 3.02
2794 6065 5.866159 ACATGCAGAATAGTGATCTCAGA 57.134 39.130 0.00 0.00 0.00 3.27
2795 6066 5.816258 ACAACATGCAGAATAGTGATCTCAG 59.184 40.000 0.00 0.00 0.00 3.35
2796 6067 5.737860 ACAACATGCAGAATAGTGATCTCA 58.262 37.500 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.