Multiple sequence alignment - TraesCS1B01G113700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G113700 chr1B 100.000 2765 0 0 1 2765 133074678 133077442 0.000000e+00 5107.0
1 TraesCS1B01G113700 chr1B 84.518 788 107 13 989 1769 132938240 132939019 0.000000e+00 765.0
2 TraesCS1B01G113700 chr1B 83.605 799 107 18 980 1772 133032471 133033251 0.000000e+00 728.0
3 TraesCS1B01G113700 chr1B 80.365 876 130 26 905 1765 133481409 133482257 6.500000e-176 627.0
4 TraesCS1B01G113700 chr1B 91.964 112 8 1 1870 1980 306202818 306202929 3.690000e-34 156.0
5 TraesCS1B01G113700 chr1B 91.150 113 8 1 1870 1980 524504772 524504884 4.770000e-33 152.0
6 TraesCS1B01G113700 chr7A 97.674 903 14 5 1870 2765 729958662 729957760 0.000000e+00 1544.0
7 TraesCS1B01G113700 chr7A 89.583 48 4 1 624 670 39299141 39299188 2.970000e-05 60.2
8 TraesCS1B01G113700 chr7A 89.583 48 4 1 624 670 443999396 443999443 2.970000e-05 60.2
9 TraesCS1B01G113700 chr1A 96.067 890 32 1 967 1853 99071077 99071966 0.000000e+00 1447.0
10 TraesCS1B01G113700 chr1A 90.667 675 50 6 1870 2537 376651480 376650812 0.000000e+00 885.0
11 TraesCS1B01G113700 chr1A 84.131 794 99 18 980 1769 99018608 99019378 0.000000e+00 743.0
12 TraesCS1B01G113700 chr1A 83.484 775 104 19 999 1765 99234401 99235159 0.000000e+00 701.0
13 TraesCS1B01G113700 chr1A 82.338 787 125 9 980 1763 99048754 99049529 0.000000e+00 671.0
14 TraesCS1B01G113700 chr1A 91.379 232 14 4 401 626 99069830 99070061 2.070000e-81 313.0
15 TraesCS1B01G113700 chr1A 91.089 202 9 3 769 969 99070855 99071048 5.870000e-67 265.0
16 TraesCS1B01G113700 chr1A 91.379 174 7 6 207 375 99069678 99069848 5.960000e-57 231.0
17 TraesCS1B01G113700 chr1A 89.583 48 4 1 624 670 67017216 67017169 2.970000e-05 60.2
18 TraesCS1B01G113700 chr1D 95.378 887 37 3 967 1853 80540961 80541843 0.000000e+00 1408.0
19 TraesCS1B01G113700 chr1D 80.276 943 156 20 836 1765 80816851 80817776 0.000000e+00 684.0
20 TraesCS1B01G113700 chr1D 85.391 486 67 4 1289 1772 80537403 80537886 4.110000e-138 501.0
21 TraesCS1B01G113700 chr1D 88.318 428 26 10 207 626 80540278 80540689 2.470000e-135 492.0
22 TraesCS1B01G113700 chr1D 90.441 272 19 5 967 1231 80448284 80448555 4.380000e-93 351.0
23 TraesCS1B01G113700 chr1D 91.701 241 19 1 980 1219 80537068 80537308 1.590000e-87 333.0
24 TraesCS1B01G113700 chr1D 90.152 264 7 2 707 969 80540687 80540932 2.660000e-85 326.0
25 TraesCS1B01G113700 chr7B 93.713 668 35 2 1870 2537 87059624 87060284 0.000000e+00 994.0
26 TraesCS1B01G113700 chr7B 83.312 785 101 20 998 1765 95337269 95338040 0.000000e+00 697.0
27 TraesCS1B01G113700 chr7B 96.618 207 5 1 1 207 179284982 179284778 2.640000e-90 342.0
28 TraesCS1B01G113700 chr7B 96.602 206 5 1 1 206 354760770 354760973 9.480000e-90 340.0
29 TraesCS1B01G113700 chr6B 93.013 687 34 7 1853 2537 430579825 430579151 0.000000e+00 990.0
30 TraesCS1B01G113700 chr6B 94.068 236 5 5 2538 2765 430565162 430564928 1.580000e-92 350.0
31 TraesCS1B01G113700 chr4A 92.110 545 35 3 1870 2413 718519554 718519017 0.000000e+00 761.0
32 TraesCS1B01G113700 chr4A 85.569 589 40 15 1870 2415 718899235 718899821 2.390000e-160 575.0
33 TraesCS1B01G113700 chrUn 98.006 351 7 0 2072 2422 40187392 40187042 6.550000e-171 610.0
34 TraesCS1B01G113700 chrUn 98.031 254 4 1 2513 2765 40187013 40186760 9.090000e-120 440.0
35 TraesCS1B01G113700 chrUn 99.043 209 2 0 1869 2077 40187870 40187662 2.600000e-100 375.0
36 TraesCS1B01G113700 chr6D 97.101 207 5 1 1 207 384023094 384023299 5.670000e-92 348.0
37 TraesCS1B01G113700 chr5D 96.635 208 5 2 1 207 272024728 272024934 7.330000e-91 344.0
38 TraesCS1B01G113700 chr5D 92.208 231 14 4 1 229 353681266 353681038 9.550000e-85 324.0
39 TraesCS1B01G113700 chr3B 96.635 208 5 1 1 208 227852015 227852220 7.330000e-91 344.0
40 TraesCS1B01G113700 chr3B 96.172 209 6 1 1 209 651750381 651750175 9.480000e-90 340.0
41 TraesCS1B01G113700 chr3B 94.068 118 5 1 1868 1983 495269327 495269210 7.870000e-41 178.0
42 TraesCS1B01G113700 chr4B 95.370 216 7 3 1 216 122643443 122643655 9.480000e-90 340.0
43 TraesCS1B01G113700 chr3D 96.154 208 7 1 1 208 557884939 557884733 3.410000e-89 339.0
44 TraesCS1B01G113700 chr2A 89.583 48 4 1 624 670 413475206 413475253 2.970000e-05 60.2
45 TraesCS1B01G113700 chr5A 89.130 46 5 0 625 670 636471075 636471030 1.070000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G113700 chr1B 133074678 133077442 2764 False 5107 5107 100.0000 1 2765 1 chr1B.!!$F3 2764
1 TraesCS1B01G113700 chr1B 132938240 132939019 779 False 765 765 84.5180 989 1769 1 chr1B.!!$F1 780
2 TraesCS1B01G113700 chr1B 133032471 133033251 780 False 728 728 83.6050 980 1772 1 chr1B.!!$F2 792
3 TraesCS1B01G113700 chr1B 133481409 133482257 848 False 627 627 80.3650 905 1765 1 chr1B.!!$F4 860
4 TraesCS1B01G113700 chr7A 729957760 729958662 902 True 1544 1544 97.6740 1870 2765 1 chr7A.!!$R1 895
5 TraesCS1B01G113700 chr1A 376650812 376651480 668 True 885 885 90.6670 1870 2537 1 chr1A.!!$R2 667
6 TraesCS1B01G113700 chr1A 99018608 99019378 770 False 743 743 84.1310 980 1769 1 chr1A.!!$F1 789
7 TraesCS1B01G113700 chr1A 99234401 99235159 758 False 701 701 83.4840 999 1765 1 chr1A.!!$F3 766
8 TraesCS1B01G113700 chr1A 99048754 99049529 775 False 671 671 82.3380 980 1763 1 chr1A.!!$F2 783
9 TraesCS1B01G113700 chr1A 99069678 99071966 2288 False 564 1447 92.4785 207 1853 4 chr1A.!!$F4 1646
10 TraesCS1B01G113700 chr1D 80816851 80817776 925 False 684 684 80.2760 836 1765 1 chr1D.!!$F2 929
11 TraesCS1B01G113700 chr1D 80537068 80541843 4775 False 612 1408 90.1880 207 1853 5 chr1D.!!$F3 1646
12 TraesCS1B01G113700 chr7B 87059624 87060284 660 False 994 994 93.7130 1870 2537 1 chr7B.!!$F1 667
13 TraesCS1B01G113700 chr7B 95337269 95338040 771 False 697 697 83.3120 998 1765 1 chr7B.!!$F2 767
14 TraesCS1B01G113700 chr6B 430579151 430579825 674 True 990 990 93.0130 1853 2537 1 chr6B.!!$R2 684
15 TraesCS1B01G113700 chr4A 718519017 718519554 537 True 761 761 92.1100 1870 2413 1 chr4A.!!$R1 543
16 TraesCS1B01G113700 chr4A 718899235 718899821 586 False 575 575 85.5690 1870 2415 1 chr4A.!!$F1 545
17 TraesCS1B01G113700 chrUn 40186760 40187870 1110 True 475 610 98.3600 1869 2765 3 chrUn.!!$R1 896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.037790 GCTTCCGCTGACTCTTCTGT 60.038 55.0 0.0 0.0 0.0 3.41 F
147 148 0.041238 ATCTTCCCGTGAGTCCCTGA 59.959 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 5379 0.429736 CGTACACGTCGAACAGCTTG 59.570 55.0 0.0 0.0 34.11 4.01 R
1790 5654 1.087202 TCGCACAGACCACACAACAC 61.087 55.0 0.0 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.341316 TCTGTACTCAGATATTGTTGCTTCC 58.659 40.000 0.00 0.00 44.58 3.46
25 26 5.109210 TGTACTCAGATATTGTTGCTTCCG 58.891 41.667 0.00 0.00 0.00 4.30
27 28 3.201290 CTCAGATATTGTTGCTTCCGCT 58.799 45.455 0.00 0.00 36.97 5.52
28 29 2.938451 TCAGATATTGTTGCTTCCGCTG 59.062 45.455 0.00 0.00 36.97 5.18
29 30 2.938451 CAGATATTGTTGCTTCCGCTGA 59.062 45.455 0.00 0.00 36.97 4.26
30 31 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
31 32 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
32 33 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
33 34 0.106708 TTGTTGCTTCCGCTGACTCT 59.893 50.000 0.00 0.00 36.97 3.24
34 35 0.106708 TGTTGCTTCCGCTGACTCTT 59.893 50.000 0.00 0.00 36.97 2.85
35 36 0.793250 GTTGCTTCCGCTGACTCTTC 59.207 55.000 0.00 0.00 36.97 2.87
36 37 0.681733 TTGCTTCCGCTGACTCTTCT 59.318 50.000 0.00 0.00 36.97 2.85
37 38 0.037882 TGCTTCCGCTGACTCTTCTG 60.038 55.000 0.00 0.00 36.97 3.02
38 39 0.037790 GCTTCCGCTGACTCTTCTGT 60.038 55.000 0.00 0.00 0.00 3.41
39 40 1.202582 GCTTCCGCTGACTCTTCTGTA 59.797 52.381 0.00 0.00 0.00 2.74
40 41 2.159170 GCTTCCGCTGACTCTTCTGTAT 60.159 50.000 0.00 0.00 0.00 2.29
41 42 3.701241 CTTCCGCTGACTCTTCTGTATC 58.299 50.000 0.00 0.00 0.00 2.24
43 44 1.671328 CCGCTGACTCTTCTGTATCGA 59.329 52.381 0.00 0.00 0.00 3.59
44 45 2.286713 CCGCTGACTCTTCTGTATCGAG 60.287 54.545 0.00 0.00 0.00 4.04
46 47 2.357637 GCTGACTCTTCTGTATCGAGCT 59.642 50.000 0.00 0.00 0.00 4.09
47 48 3.181491 GCTGACTCTTCTGTATCGAGCTT 60.181 47.826 0.00 0.00 0.00 3.74
50 51 4.941873 TGACTCTTCTGTATCGAGCTTGTA 59.058 41.667 0.00 0.00 0.00 2.41
51 52 5.590663 TGACTCTTCTGTATCGAGCTTGTAT 59.409 40.000 0.00 0.00 0.00 2.29
52 53 6.095580 TGACTCTTCTGTATCGAGCTTGTATT 59.904 38.462 0.00 0.00 0.00 1.89
74 75 4.888325 CCCTCGAGGCCCCTGGAT 62.888 72.222 26.87 0.00 30.73 3.41
75 76 2.770048 CCTCGAGGCCCCTGGATT 60.770 66.667 20.67 0.00 30.73 3.01
76 77 2.507944 CTCGAGGCCCCTGGATTG 59.492 66.667 3.91 0.00 30.73 2.67
77 78 2.285368 TCGAGGCCCCTGGATTGT 60.285 61.111 0.00 0.00 0.00 2.71
78 79 1.002403 TCGAGGCCCCTGGATTGTA 59.998 57.895 0.00 0.00 0.00 2.41
79 80 0.619255 TCGAGGCCCCTGGATTGTAA 60.619 55.000 0.00 0.00 0.00 2.41
81 82 1.697432 CGAGGCCCCTGGATTGTAATA 59.303 52.381 0.00 0.00 0.00 0.98
82 83 2.305927 CGAGGCCCCTGGATTGTAATAT 59.694 50.000 0.00 0.00 0.00 1.28
83 84 3.517901 CGAGGCCCCTGGATTGTAATATA 59.482 47.826 0.00 0.00 0.00 0.86
84 85 4.019681 CGAGGCCCCTGGATTGTAATATAA 60.020 45.833 0.00 0.00 0.00 0.98
85 86 5.514136 CGAGGCCCCTGGATTGTAATATAAA 60.514 44.000 0.00 0.00 0.00 1.40
87 88 5.375655 AGGCCCCTGGATTGTAATATAAAGT 59.624 40.000 0.00 0.00 0.00 2.66
88 89 6.075315 GGCCCCTGGATTGTAATATAAAGTT 58.925 40.000 0.00 0.00 0.00 2.66
91 92 7.069455 GCCCCTGGATTGTAATATAAAGTTTGT 59.931 37.037 0.00 0.00 0.00 2.83
121 122 7.624360 TTCATTTTTGTGTCTAGAGTTGTGT 57.376 32.000 0.00 0.00 0.00 3.72
122 123 7.624360 TCATTTTTGTGTCTAGAGTTGTGTT 57.376 32.000 0.00 0.00 0.00 3.32
123 124 7.471721 TCATTTTTGTGTCTAGAGTTGTGTTG 58.528 34.615 0.00 0.00 0.00 3.33
124 125 6.811253 TTTTTGTGTCTAGAGTTGTGTTGT 57.189 33.333 0.00 0.00 0.00 3.32
125 126 5.794687 TTTGTGTCTAGAGTTGTGTTGTG 57.205 39.130 0.00 0.00 0.00 3.33
126 127 4.729227 TGTGTCTAGAGTTGTGTTGTGA 57.271 40.909 0.00 0.00 0.00 3.58
127 128 5.276461 TGTGTCTAGAGTTGTGTTGTGAT 57.724 39.130 0.00 0.00 0.00 3.06
128 129 6.399639 TGTGTCTAGAGTTGTGTTGTGATA 57.600 37.500 0.00 0.00 0.00 2.15
129 130 6.993079 TGTGTCTAGAGTTGTGTTGTGATAT 58.007 36.000 0.00 0.00 0.00 1.63
131 132 7.039714 TGTGTCTAGAGTTGTGTTGTGATATCT 60.040 37.037 3.98 0.00 0.00 1.98
132 133 7.815068 GTGTCTAGAGTTGTGTTGTGATATCTT 59.185 37.037 3.98 0.00 0.00 2.40
133 134 8.029522 TGTCTAGAGTTGTGTTGTGATATCTTC 58.970 37.037 3.98 0.00 0.00 2.87
134 135 7.489757 GTCTAGAGTTGTGTTGTGATATCTTCC 59.510 40.741 3.98 0.00 0.00 3.46
135 136 5.491982 AGAGTTGTGTTGTGATATCTTCCC 58.508 41.667 3.98 0.00 0.00 3.97
137 138 3.973206 TGTGTTGTGATATCTTCCCGT 57.027 42.857 3.98 0.00 0.00 5.28
138 139 3.595173 TGTGTTGTGATATCTTCCCGTG 58.405 45.455 3.98 0.00 0.00 4.94
139 140 3.259625 TGTGTTGTGATATCTTCCCGTGA 59.740 43.478 3.98 0.00 0.00 4.35
141 142 3.513912 TGTTGTGATATCTTCCCGTGAGT 59.486 43.478 3.98 0.00 0.00 3.41
142 143 4.113354 GTTGTGATATCTTCCCGTGAGTC 58.887 47.826 3.98 0.00 0.00 3.36
143 144 2.693591 TGTGATATCTTCCCGTGAGTCC 59.306 50.000 3.98 0.00 0.00 3.85
145 146 2.091278 TGATATCTTCCCGTGAGTCCCT 60.091 50.000 3.98 0.00 0.00 4.20
146 147 1.776662 TATCTTCCCGTGAGTCCCTG 58.223 55.000 0.00 0.00 0.00 4.45
147 148 0.041238 ATCTTCCCGTGAGTCCCTGA 59.959 55.000 0.00 0.00 0.00 3.86
148 149 0.041238 TCTTCCCGTGAGTCCCTGAT 59.959 55.000 0.00 0.00 0.00 2.90
149 150 0.461961 CTTCCCGTGAGTCCCTGATC 59.538 60.000 0.00 0.00 0.00 2.92
150 151 0.041238 TTCCCGTGAGTCCCTGATCT 59.959 55.000 0.00 0.00 0.00 2.75
151 152 0.041238 TCCCGTGAGTCCCTGATCTT 59.959 55.000 0.00 0.00 0.00 2.40
152 153 0.176680 CCCGTGAGTCCCTGATCTTG 59.823 60.000 0.00 0.00 0.00 3.02
153 154 1.186200 CCGTGAGTCCCTGATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
154 155 1.759445 CCGTGAGTCCCTGATCTTGAT 59.241 52.381 0.00 0.00 0.00 2.57
157 158 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
160 161 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
161 162 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
162 163 3.130516 GTCCCTGATCTTGATCGTACACA 59.869 47.826 6.19 0.00 0.00 3.72
163 164 3.960755 TCCCTGATCTTGATCGTACACAT 59.039 43.478 6.19 0.00 0.00 3.21
165 166 5.104941 TCCCTGATCTTGATCGTACACATTT 60.105 40.000 6.19 0.00 0.00 2.32
167 168 5.469373 TGATCTTGATCGTACACATTTGC 57.531 39.130 6.19 0.00 0.00 3.68
168 169 3.989705 TCTTGATCGTACACATTTGCG 57.010 42.857 0.00 0.00 0.00 4.85
169 170 3.322369 TCTTGATCGTACACATTTGCGT 58.678 40.909 0.00 0.00 0.00 5.24
182 183 5.868257 CACATTTGCGTGTATGATTAGTGT 58.132 37.500 0.00 0.00 32.00 3.55
183 184 6.999456 CACATTTGCGTGTATGATTAGTGTA 58.001 36.000 0.00 0.00 32.00 2.90
185 186 5.689927 TTTGCGTGTATGATTAGTGTACG 57.310 39.130 0.00 0.00 0.00 3.67
186 187 4.619437 TGCGTGTATGATTAGTGTACGA 57.381 40.909 0.00 0.00 32.36 3.43
187 188 5.177725 TGCGTGTATGATTAGTGTACGAT 57.822 39.130 0.00 0.00 32.36 3.73
189 190 5.457473 TGCGTGTATGATTAGTGTACGATTG 59.543 40.000 0.00 0.00 32.36 2.67
190 191 5.684184 GCGTGTATGATTAGTGTACGATTGA 59.316 40.000 0.00 0.00 32.36 2.57
191 192 6.197655 GCGTGTATGATTAGTGTACGATTGAA 59.802 38.462 0.00 0.00 32.36 2.69
192 193 7.096189 GCGTGTATGATTAGTGTACGATTGAAT 60.096 37.037 0.00 0.00 32.36 2.57
193 194 8.752254 CGTGTATGATTAGTGTACGATTGAATT 58.248 33.333 0.00 0.00 32.36 2.17
194 195 9.849607 GTGTATGATTAGTGTACGATTGAATTG 57.150 33.333 0.00 0.00 0.00 2.32
195 196 9.040939 TGTATGATTAGTGTACGATTGAATTGG 57.959 33.333 0.00 0.00 0.00 3.16
196 197 6.918892 TGATTAGTGTACGATTGAATTGGG 57.081 37.500 0.00 0.00 0.00 4.12
197 198 5.820423 TGATTAGTGTACGATTGAATTGGGG 59.180 40.000 0.00 0.00 0.00 4.96
198 199 2.999331 AGTGTACGATTGAATTGGGGG 58.001 47.619 0.00 0.00 0.00 5.40
199 200 1.404035 GTGTACGATTGAATTGGGGGC 59.596 52.381 0.00 0.00 0.00 5.80
200 201 0.661020 GTACGATTGAATTGGGGGCG 59.339 55.000 0.00 0.00 0.00 6.13
201 202 0.253610 TACGATTGAATTGGGGGCGT 59.746 50.000 0.00 0.00 0.00 5.68
202 203 1.029947 ACGATTGAATTGGGGGCGTC 61.030 55.000 0.00 0.00 0.00 5.19
205 206 0.251564 ATTGAATTGGGGGCGTCACA 60.252 50.000 0.00 0.00 0.00 3.58
258 3263 8.823220 ACATAGTACATTTCCTTAAATTGGCT 57.177 30.769 0.00 0.00 32.87 4.75
332 3337 5.354234 AGCATACGAAAGTTCCTACATTTGG 59.646 40.000 0.00 0.00 46.40 3.28
387 3395 3.736094 ACCATGATCTTCTAGGGGAACA 58.264 45.455 0.00 0.00 0.00 3.18
390 3398 5.194537 ACCATGATCTTCTAGGGGAACATTT 59.805 40.000 0.00 0.00 0.00 2.32
428 3436 9.606631 AAATTTTGCCTTGTCATAAGTACAAAA 57.393 25.926 11.98 11.98 36.46 2.44
468 3480 6.423001 ACGACAACTAACTCTGTAAATCCAAC 59.577 38.462 0.00 0.00 0.00 3.77
536 3548 5.072040 ACTGCAACAAAATTGGCCTATAC 57.928 39.130 3.32 0.00 0.00 1.47
544 3556 6.930731 ACAAAATTGGCCTATACGAACAAAT 58.069 32.000 3.32 0.00 0.00 2.32
583 3595 9.021863 GTACCGTAAGAATCTTGATGTTCTTAG 57.978 37.037 5.64 1.87 43.63 2.18
589 3601 8.908786 AAGAATCTTGATGTTCTTAGACAACA 57.091 30.769 0.00 0.00 41.50 3.33
626 3638 6.190954 ACTTTTGACTGGACTGTTTTGTAC 57.809 37.500 0.00 0.00 0.00 2.90
627 3639 5.944007 ACTTTTGACTGGACTGTTTTGTACT 59.056 36.000 0.00 0.00 0.00 2.73
628 3640 6.093633 ACTTTTGACTGGACTGTTTTGTACTC 59.906 38.462 0.00 0.00 0.00 2.59
629 3641 4.067972 TGACTGGACTGTTTTGTACTCC 57.932 45.455 0.00 0.00 0.00 3.85
630 3642 3.181458 TGACTGGACTGTTTTGTACTCCC 60.181 47.826 0.00 0.00 0.00 4.30
631 3643 3.046374 ACTGGACTGTTTTGTACTCCCT 58.954 45.455 0.00 0.00 0.00 4.20
632 3644 3.071167 ACTGGACTGTTTTGTACTCCCTC 59.929 47.826 0.00 0.00 0.00 4.30
633 3645 2.370849 TGGACTGTTTTGTACTCCCTCC 59.629 50.000 0.00 0.00 0.00 4.30
634 3646 2.290134 GGACTGTTTTGTACTCCCTCCC 60.290 54.545 0.00 0.00 0.00 4.30
635 3647 2.638363 GACTGTTTTGTACTCCCTCCCT 59.362 50.000 0.00 0.00 0.00 4.20
636 3648 2.638363 ACTGTTTTGTACTCCCTCCCTC 59.362 50.000 0.00 0.00 0.00 4.30
637 3649 2.907042 CTGTTTTGTACTCCCTCCCTCT 59.093 50.000 0.00 0.00 0.00 3.69
638 3650 2.904434 TGTTTTGTACTCCCTCCCTCTC 59.096 50.000 0.00 0.00 0.00 3.20
639 3651 3.174779 GTTTTGTACTCCCTCCCTCTCT 58.825 50.000 0.00 0.00 0.00 3.10
640 3652 3.562108 TTTGTACTCCCTCCCTCTCTT 57.438 47.619 0.00 0.00 0.00 2.85
641 3653 4.687262 TTTGTACTCCCTCCCTCTCTTA 57.313 45.455 0.00 0.00 0.00 2.10
642 3654 4.687262 TTGTACTCCCTCCCTCTCTTAA 57.313 45.455 0.00 0.00 0.00 1.85
643 3655 4.901785 TGTACTCCCTCCCTCTCTTAAT 57.098 45.455 0.00 0.00 0.00 1.40
644 3656 6.351317 TTGTACTCCCTCCCTCTCTTAATA 57.649 41.667 0.00 0.00 0.00 0.98
645 3657 6.547396 TGTACTCCCTCCCTCTCTTAATAT 57.453 41.667 0.00 0.00 0.00 1.28
646 3658 7.658887 TGTACTCCCTCCCTCTCTTAATATA 57.341 40.000 0.00 0.00 0.00 0.86
647 3659 8.065385 TGTACTCCCTCCCTCTCTTAATATAA 57.935 38.462 0.00 0.00 0.00 0.98
648 3660 7.949006 TGTACTCCCTCCCTCTCTTAATATAAC 59.051 40.741 0.00 0.00 0.00 1.89
649 3661 6.935036 ACTCCCTCCCTCTCTTAATATAACA 58.065 40.000 0.00 0.00 0.00 2.41
650 3662 7.371043 ACTCCCTCCCTCTCTTAATATAACAA 58.629 38.462 0.00 0.00 0.00 2.83
651 3663 7.290481 ACTCCCTCCCTCTCTTAATATAACAAC 59.710 40.741 0.00 0.00 0.00 3.32
652 3664 7.136885 TCCCTCCCTCTCTTAATATAACAACA 58.863 38.462 0.00 0.00 0.00 3.33
653 3665 7.794683 TCCCTCCCTCTCTTAATATAACAACAT 59.205 37.037 0.00 0.00 0.00 2.71
654 3666 8.440771 CCCTCCCTCTCTTAATATAACAACATT 58.559 37.037 0.00 0.00 0.00 2.71
655 3667 9.853177 CCTCCCTCTCTTAATATAACAACATTT 57.147 33.333 0.00 0.00 0.00 2.32
671 3683 7.859325 ACAACATTTTTGACACTACACTAGT 57.141 32.000 0.00 0.00 40.28 2.57
753 3768 1.582502 GGACTACTTGACGATTTCGCG 59.417 52.381 0.00 0.00 44.43 5.87
813 4563 1.034838 AGCTCGTGTAGGCCAGAGAG 61.035 60.000 5.01 7.44 34.09 3.20
814 4564 1.316706 GCTCGTGTAGGCCAGAGAGT 61.317 60.000 5.01 0.00 33.71 3.24
815 4565 2.017623 GCTCGTGTAGGCCAGAGAGTA 61.018 57.143 5.01 0.00 33.71 2.59
816 4566 1.944024 CTCGTGTAGGCCAGAGAGTAG 59.056 57.143 5.01 0.00 32.84 2.57
817 4567 1.558294 TCGTGTAGGCCAGAGAGTAGA 59.442 52.381 5.01 0.00 0.00 2.59
818 4568 1.944024 CGTGTAGGCCAGAGAGTAGAG 59.056 57.143 5.01 0.00 0.00 2.43
819 4569 2.420269 CGTGTAGGCCAGAGAGTAGAGA 60.420 54.545 5.01 0.00 0.00 3.10
863 4613 3.006323 GGATCTGGACTGCATCGATAGTT 59.994 47.826 0.00 0.00 37.40 2.24
897 4647 4.082523 AGTGACGCCACCATCGGG 62.083 66.667 0.00 0.00 44.22 5.14
953 4711 2.135139 GTGATGAACTCGACTGTGCAA 58.865 47.619 0.00 0.00 0.00 4.08
963 4722 4.907946 CTGTGCAACGCAGTCAAG 57.092 55.556 0.00 0.00 45.00 3.02
1275 5070 3.202151 TCCCAATCCCATAAAGGACTGAC 59.798 47.826 0.00 0.00 35.07 3.51
1276 5071 3.053693 CCCAATCCCATAAAGGACTGACA 60.054 47.826 0.00 0.00 35.07 3.58
1341 5202 3.659092 CGCAAGCACAAGCCGGAA 61.659 61.111 5.05 0.00 43.56 4.30
1515 5379 3.595108 GAACGCGGCAAAGCTGACC 62.595 63.158 12.47 0.00 37.02 4.02
1572 5436 4.153330 AGGTACCTCGCCGGGGAT 62.153 66.667 22.85 10.89 36.97 3.85
1650 5514 3.445687 TACGCGTCGCTGGTGGAT 61.446 61.111 18.63 0.00 0.00 3.41
1790 5654 4.695231 ACGAGCACCGACCGAACG 62.695 66.667 5.53 0.00 41.76 3.95
1841 5705 5.409826 TCAATGTTTTGGGTTGTTTGTGTTC 59.590 36.000 0.00 0.00 33.44 3.18
1853 5717 2.979813 GTTTGTGTTCCACGCATGAATC 59.020 45.455 0.00 0.00 38.53 2.52
1854 5718 2.183478 TGTGTTCCACGCATGAATCT 57.817 45.000 0.00 0.00 37.14 2.40
1855 5719 2.076100 TGTGTTCCACGCATGAATCTC 58.924 47.619 0.00 0.00 37.14 2.75
1856 5720 2.289631 TGTGTTCCACGCATGAATCTCT 60.290 45.455 0.00 0.00 37.14 3.10
1857 5721 2.349886 GTGTTCCACGCATGAATCTCTC 59.650 50.000 0.00 0.00 0.00 3.20
1858 5722 1.936547 GTTCCACGCATGAATCTCTCC 59.063 52.381 0.00 0.00 0.00 3.71
1859 5723 1.489481 TCCACGCATGAATCTCTCCT 58.511 50.000 0.00 0.00 0.00 3.69
1860 5724 1.833630 TCCACGCATGAATCTCTCCTT 59.166 47.619 0.00 0.00 0.00 3.36
1861 5725 3.031013 TCCACGCATGAATCTCTCCTTA 58.969 45.455 0.00 0.00 0.00 2.69
1862 5726 3.450817 TCCACGCATGAATCTCTCCTTAA 59.549 43.478 0.00 0.00 0.00 1.85
2080 6267 5.537674 TCCGTCTCAAAACTTCCTAAGTAGT 59.462 40.000 0.00 0.00 41.91 2.73
2318 6508 9.386122 AGCCATCTAGGAATAAGAAATAAGAGA 57.614 33.333 0.00 0.00 41.22 3.10
2396 6588 3.435186 GGAAAGGAGCGCCACTGC 61.435 66.667 9.88 0.00 36.89 4.40
2475 6669 1.205893 CAGAGAGCCTAGCGACCTTTT 59.794 52.381 0.00 0.00 0.00 2.27
2557 6751 1.009829 GTGATGGATGACGAGCAACC 58.990 55.000 0.00 0.00 39.74 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.643339 CGGAAGCAACAATATCTGAGTAC 57.357 43.478 0.00 0.00 0.00 2.73
21 22 2.097629 CGATACAGAAGAGTCAGCGGAA 59.902 50.000 0.00 0.00 0.00 4.30
22 23 1.671328 CGATACAGAAGAGTCAGCGGA 59.329 52.381 0.00 0.00 0.00 5.54
23 24 1.671328 TCGATACAGAAGAGTCAGCGG 59.329 52.381 0.00 0.00 0.00 5.52
24 25 2.852901 GCTCGATACAGAAGAGTCAGCG 60.853 54.545 0.00 0.00 34.69 5.18
25 26 2.357637 AGCTCGATACAGAAGAGTCAGC 59.642 50.000 0.00 0.00 34.69 4.26
27 28 3.759086 ACAAGCTCGATACAGAAGAGTCA 59.241 43.478 0.00 0.00 34.69 3.41
28 29 4.364415 ACAAGCTCGATACAGAAGAGTC 57.636 45.455 0.00 0.00 34.69 3.36
29 30 6.458232 AATACAAGCTCGATACAGAAGAGT 57.542 37.500 0.00 0.00 34.69 3.24
30 31 5.623264 CGAATACAAGCTCGATACAGAAGAG 59.377 44.000 0.00 0.00 37.23 2.85
31 32 5.296035 TCGAATACAAGCTCGATACAGAAGA 59.704 40.000 0.00 0.00 39.07 2.87
32 33 5.511571 TCGAATACAAGCTCGATACAGAAG 58.488 41.667 0.00 0.00 39.07 2.85
33 34 5.494632 TCGAATACAAGCTCGATACAGAA 57.505 39.130 0.00 0.00 39.07 3.02
34 35 4.554919 GCTCGAATACAAGCTCGATACAGA 60.555 45.833 0.00 0.00 42.73 3.41
35 36 3.666334 GCTCGAATACAAGCTCGATACAG 59.334 47.826 0.00 0.00 42.73 2.74
36 37 3.550233 GGCTCGAATACAAGCTCGATACA 60.550 47.826 0.00 0.00 42.73 2.29
37 38 2.981140 GGCTCGAATACAAGCTCGATAC 59.019 50.000 0.00 0.00 42.73 2.24
38 39 2.030185 GGGCTCGAATACAAGCTCGATA 60.030 50.000 0.00 0.00 42.73 2.92
39 40 1.269831 GGGCTCGAATACAAGCTCGAT 60.270 52.381 0.00 0.00 42.73 3.59
40 41 0.102481 GGGCTCGAATACAAGCTCGA 59.898 55.000 0.00 0.00 41.54 4.04
41 42 0.103208 AGGGCTCGAATACAAGCTCG 59.897 55.000 0.00 0.00 43.97 5.03
57 58 4.888325 ATCCAGGGGCCTCGAGGG 62.888 72.222 32.06 15.17 35.18 4.30
58 59 2.770048 AATCCAGGGGCCTCGAGG 60.770 66.667 27.83 27.83 38.53 4.63
60 61 0.619255 TTACAATCCAGGGGCCTCGA 60.619 55.000 0.84 0.00 0.00 4.04
62 63 5.514500 TTATATTACAATCCAGGGGCCTC 57.486 43.478 0.84 0.00 0.00 4.70
63 64 5.375655 ACTTTATATTACAATCCAGGGGCCT 59.624 40.000 0.84 0.00 0.00 5.19
64 65 5.641155 ACTTTATATTACAATCCAGGGGCC 58.359 41.667 0.00 0.00 0.00 5.80
65 66 7.069455 ACAAACTTTATATTACAATCCAGGGGC 59.931 37.037 0.00 0.00 0.00 5.80
96 97 8.050778 ACACAACTCTAGACACAAAAATGAAA 57.949 30.769 0.00 0.00 0.00 2.69
97 98 7.624360 ACACAACTCTAGACACAAAAATGAA 57.376 32.000 0.00 0.00 0.00 2.57
98 99 7.120579 ACAACACAACTCTAGACACAAAAATGA 59.879 33.333 0.00 0.00 0.00 2.57
100 101 7.120579 TCACAACACAACTCTAGACACAAAAAT 59.879 33.333 0.00 0.00 0.00 1.82
101 102 6.428465 TCACAACACAACTCTAGACACAAAAA 59.572 34.615 0.00 0.00 0.00 1.94
102 103 5.935206 TCACAACACAACTCTAGACACAAAA 59.065 36.000 0.00 0.00 0.00 2.44
103 104 5.483811 TCACAACACAACTCTAGACACAAA 58.516 37.500 0.00 0.00 0.00 2.83
105 106 4.729227 TCACAACACAACTCTAGACACA 57.271 40.909 0.00 0.00 0.00 3.72
107 108 7.468141 AGATATCACAACACAACTCTAGACA 57.532 36.000 5.32 0.00 0.00 3.41
110 111 6.758886 GGGAAGATATCACAACACAACTCTAG 59.241 42.308 5.32 0.00 0.00 2.43
111 112 6.627287 CGGGAAGATATCACAACACAACTCTA 60.627 42.308 5.32 0.00 0.00 2.43
112 113 5.491982 GGGAAGATATCACAACACAACTCT 58.508 41.667 5.32 0.00 0.00 3.24
113 114 4.330074 CGGGAAGATATCACAACACAACTC 59.670 45.833 5.32 0.00 0.00 3.01
114 115 4.253685 CGGGAAGATATCACAACACAACT 58.746 43.478 5.32 0.00 0.00 3.16
115 116 4.000988 ACGGGAAGATATCACAACACAAC 58.999 43.478 5.32 0.00 0.00 3.32
117 118 3.259625 TCACGGGAAGATATCACAACACA 59.740 43.478 5.32 0.00 0.00 3.72
120 121 4.113354 GACTCACGGGAAGATATCACAAC 58.887 47.826 5.32 0.00 0.00 3.32
121 122 3.132289 GGACTCACGGGAAGATATCACAA 59.868 47.826 5.32 0.00 0.00 3.33
122 123 2.693591 GGACTCACGGGAAGATATCACA 59.306 50.000 5.32 0.00 0.00 3.58
123 124 2.036089 GGGACTCACGGGAAGATATCAC 59.964 54.545 5.32 0.00 0.00 3.06
124 125 2.091278 AGGGACTCACGGGAAGATATCA 60.091 50.000 5.32 0.00 0.00 2.15
125 126 2.297597 CAGGGACTCACGGGAAGATATC 59.702 54.545 0.00 0.00 34.60 1.63
126 127 2.091278 TCAGGGACTCACGGGAAGATAT 60.091 50.000 0.00 0.00 34.60 1.63
127 128 1.286849 TCAGGGACTCACGGGAAGATA 59.713 52.381 0.00 0.00 34.60 1.98
128 129 0.041238 TCAGGGACTCACGGGAAGAT 59.959 55.000 0.00 0.00 34.60 2.40
129 130 0.041238 ATCAGGGACTCACGGGAAGA 59.959 55.000 0.00 0.00 34.60 2.87
131 132 0.041238 AGATCAGGGACTCACGGGAA 59.959 55.000 0.00 0.00 34.60 3.97
132 133 0.041238 AAGATCAGGGACTCACGGGA 59.959 55.000 0.00 0.00 34.60 5.14
133 134 0.176680 CAAGATCAGGGACTCACGGG 59.823 60.000 0.00 0.00 34.60 5.28
134 135 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
135 136 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
137 138 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
138 139 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
139 140 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
141 142 3.361786 TGTGTACGATCAAGATCAGGGA 58.638 45.455 10.39 0.00 37.69 4.20
142 143 3.801114 TGTGTACGATCAAGATCAGGG 57.199 47.619 10.39 0.00 37.69 4.45
143 144 5.503031 GCAAATGTGTACGATCAAGATCAGG 60.503 44.000 10.39 0.00 37.69 3.86
145 146 4.032786 CGCAAATGTGTACGATCAAGATCA 59.967 41.667 10.39 0.00 37.69 2.92
146 147 4.032900 ACGCAAATGTGTACGATCAAGATC 59.967 41.667 0.00 0.00 36.94 2.75
147 148 3.932710 ACGCAAATGTGTACGATCAAGAT 59.067 39.130 0.00 0.00 36.94 2.40
148 149 3.122780 CACGCAAATGTGTACGATCAAGA 59.877 43.478 0.00 0.00 36.94 3.02
149 150 3.407252 CACGCAAATGTGTACGATCAAG 58.593 45.455 0.00 0.00 36.94 3.02
150 151 3.447752 CACGCAAATGTGTACGATCAA 57.552 42.857 0.00 0.00 36.94 2.57
160 161 6.237728 CGTACACTAATCATACACGCAAATGT 60.238 38.462 0.00 0.00 36.56 2.71
161 162 6.020201 TCGTACACTAATCATACACGCAAATG 60.020 38.462 0.00 0.00 0.00 2.32
162 163 6.037726 TCGTACACTAATCATACACGCAAAT 58.962 36.000 0.00 0.00 0.00 2.32
163 164 5.400703 TCGTACACTAATCATACACGCAAA 58.599 37.500 0.00 0.00 0.00 3.68
165 166 4.619437 TCGTACACTAATCATACACGCA 57.381 40.909 0.00 0.00 0.00 5.24
167 168 7.673810 TTCAATCGTACACTAATCATACACG 57.326 36.000 0.00 0.00 0.00 4.49
168 169 9.849607 CAATTCAATCGTACACTAATCATACAC 57.150 33.333 0.00 0.00 0.00 2.90
169 170 9.040939 CCAATTCAATCGTACACTAATCATACA 57.959 33.333 0.00 0.00 0.00 2.29
171 172 7.659799 CCCCAATTCAATCGTACACTAATCATA 59.340 37.037 0.00 0.00 0.00 2.15
173 174 5.820423 CCCCAATTCAATCGTACACTAATCA 59.180 40.000 0.00 0.00 0.00 2.57
174 175 5.238650 CCCCCAATTCAATCGTACACTAATC 59.761 44.000 0.00 0.00 0.00 1.75
175 176 5.130350 CCCCCAATTCAATCGTACACTAAT 58.870 41.667 0.00 0.00 0.00 1.73
176 177 4.519213 CCCCCAATTCAATCGTACACTAA 58.481 43.478 0.00 0.00 0.00 2.24
177 178 3.683281 GCCCCCAATTCAATCGTACACTA 60.683 47.826 0.00 0.00 0.00 2.74
178 179 2.944094 GCCCCCAATTCAATCGTACACT 60.944 50.000 0.00 0.00 0.00 3.55
179 180 1.404035 GCCCCCAATTCAATCGTACAC 59.596 52.381 0.00 0.00 0.00 2.90
180 181 1.757682 GCCCCCAATTCAATCGTACA 58.242 50.000 0.00 0.00 0.00 2.90
182 183 0.253610 ACGCCCCCAATTCAATCGTA 59.746 50.000 0.00 0.00 0.00 3.43
183 184 1.001393 ACGCCCCCAATTCAATCGT 60.001 52.632 0.00 0.00 0.00 3.73
185 186 0.455815 GTGACGCCCCCAATTCAATC 59.544 55.000 0.00 0.00 0.00 2.67
186 187 0.251564 TGTGACGCCCCCAATTCAAT 60.252 50.000 0.00 0.00 0.00 2.57
187 188 1.151679 TGTGACGCCCCCAATTCAA 59.848 52.632 0.00 0.00 0.00 2.69
189 190 1.175983 TTGTGTGACGCCCCCAATTC 61.176 55.000 0.00 0.00 0.00 2.17
190 191 1.152652 TTGTGTGACGCCCCCAATT 60.153 52.632 0.00 0.00 0.00 2.32
191 192 1.603455 CTTGTGTGACGCCCCCAAT 60.603 57.895 0.00 0.00 0.00 3.16
192 193 2.203280 CTTGTGTGACGCCCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
193 194 3.164977 TCTTGTGTGACGCCCCCA 61.165 61.111 0.00 0.00 0.00 4.96
194 195 2.358737 CTCTTGTGTGACGCCCCC 60.359 66.667 0.00 0.00 0.00 5.40
195 196 1.374758 CTCTCTTGTGTGACGCCCC 60.375 63.158 0.00 0.00 0.00 5.80
196 197 2.029844 GCTCTCTTGTGTGACGCCC 61.030 63.158 0.00 0.00 0.00 6.13
197 198 0.243907 TAGCTCTCTTGTGTGACGCC 59.756 55.000 0.00 0.00 0.00 5.68
198 199 1.721926 GTTAGCTCTCTTGTGTGACGC 59.278 52.381 0.00 0.00 0.00 5.19
199 200 3.290308 AGTTAGCTCTCTTGTGTGACG 57.710 47.619 0.00 0.00 0.00 4.35
200 201 5.993106 AAAAGTTAGCTCTCTTGTGTGAC 57.007 39.130 0.00 0.00 0.00 3.67
201 202 9.371136 CATATAAAAGTTAGCTCTCTTGTGTGA 57.629 33.333 0.00 0.00 0.00 3.58
202 203 9.155975 ACATATAAAAGTTAGCTCTCTTGTGTG 57.844 33.333 0.00 0.00 0.00 3.82
246 3251 9.665719 AAAAATGGTTACATAGCCAATTTAAGG 57.334 29.630 7.89 0.00 38.28 2.69
293 3298 3.501062 CGTATGCTGAGAAATCATGGCAT 59.499 43.478 0.00 0.00 42.05 4.40
309 3314 5.569413 CCAAATGTAGGAACTTTCGTATGC 58.431 41.667 0.00 0.00 41.75 3.14
428 3436 6.308371 AGTTGTCGTCGGTGAAAATTAAAT 57.692 33.333 0.00 0.00 0.00 1.40
443 3451 6.092955 TGGATTTACAGAGTTAGTTGTCGT 57.907 37.500 0.00 0.00 0.00 4.34
583 3595 2.812011 GTTGGGTGATGGTACTGTTGTC 59.188 50.000 0.00 0.00 0.00 3.18
589 3601 4.141251 AGTCAAAAGTTGGGTGATGGTACT 60.141 41.667 0.00 0.00 0.00 2.73
626 3638 7.290248 TGTTGTTATATTAAGAGAGGGAGGGAG 59.710 40.741 0.00 0.00 0.00 4.30
627 3639 7.136885 TGTTGTTATATTAAGAGAGGGAGGGA 58.863 38.462 0.00 0.00 0.00 4.20
628 3640 7.374975 TGTTGTTATATTAAGAGAGGGAGGG 57.625 40.000 0.00 0.00 0.00 4.30
629 3641 9.853177 AAATGTTGTTATATTAAGAGAGGGAGG 57.147 33.333 0.00 0.00 0.00 4.30
645 3657 9.386010 ACTAGTGTAGTGTCAAAAATGTTGTTA 57.614 29.630 0.00 0.00 37.69 2.41
646 3658 8.276252 ACTAGTGTAGTGTCAAAAATGTTGTT 57.724 30.769 0.00 0.00 37.69 2.83
647 3659 7.859325 ACTAGTGTAGTGTCAAAAATGTTGT 57.141 32.000 0.00 0.00 37.69 3.32
736 3750 1.904144 TCCGCGAAATCGTCAAGTAG 58.096 50.000 8.23 0.00 42.22 2.57
753 3768 2.456989 CAAATGCATGTTCGCTCATCC 58.543 47.619 0.00 0.00 0.00 3.51
863 4613 1.080093 CTGCTTGCGTCCGGAGTTA 60.080 57.895 3.06 0.00 0.00 2.24
953 4711 2.633657 CGCTTTGCTTGACTGCGT 59.366 55.556 0.00 0.00 41.45 5.24
963 4722 3.804193 CTCCCGCTTCCGCTTTGC 61.804 66.667 0.00 0.00 0.00 3.68
1009 4804 1.228675 ACCCGTAGACCTTCACCGT 60.229 57.895 0.00 0.00 0.00 4.83
1341 5202 4.496336 GAGCCGGAGCCCAGCAAT 62.496 66.667 5.05 0.00 41.25 3.56
1383 5247 2.447572 TCCACCTCCAGCCACACA 60.448 61.111 0.00 0.00 0.00 3.72
1515 5379 0.429736 CGTACACGTCGAACAGCTTG 59.570 55.000 0.00 0.00 34.11 4.01
1753 5617 3.658709 GTTCTTGTCTTCACTCCTCTGG 58.341 50.000 0.00 0.00 0.00 3.86
1790 5654 1.087202 TCGCACAGACCACACAACAC 61.087 55.000 0.00 0.00 0.00 3.32
1841 5705 2.322355 AAGGAGAGATTCATGCGTGG 57.678 50.000 5.98 0.00 0.00 4.94
2080 6267 4.337274 GGTTTTGAGACGGAGAAAGGAAAA 59.663 41.667 0.00 0.00 0.00 2.29
2396 6588 2.029649 CACAGCAACCTTCCTTCCATTG 60.030 50.000 0.00 0.00 0.00 2.82
2475 6669 2.199208 TCCATTCCATTCTCTGCTCCA 58.801 47.619 0.00 0.00 0.00 3.86
2557 6751 2.223923 CGAGCTCCCTTATCCAGACAAG 60.224 54.545 8.47 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.