Multiple sequence alignment - TraesCS1B01G113200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G113200 chr1B 100.000 4153 0 0 1 4153 131790879 131786727 0.000000e+00 7670.0
1 TraesCS1B01G113200 chr1B 93.109 2293 102 23 606 2887 131505639 131503392 0.000000e+00 3308.0
2 TraesCS1B01G113200 chr1B 90.943 1336 81 22 2484 3783 130795270 130793939 0.000000e+00 1760.0
3 TraesCS1B01G113200 chr1B 90.780 1334 86 19 2484 3783 130860810 130859480 0.000000e+00 1748.0
4 TraesCS1B01G113200 chr1B 90.630 1334 88 21 2484 3783 131130925 131129595 0.000000e+00 1736.0
5 TraesCS1B01G113200 chr1B 90.337 1335 91 19 2484 3783 131381340 131380009 0.000000e+00 1716.0
6 TraesCS1B01G113200 chr1B 91.691 674 43 7 2484 3145 131602258 131601586 0.000000e+00 922.0
7 TraesCS1B01G113200 chr1B 88.537 663 51 10 3143 3783 131583972 131583313 0.000000e+00 780.0
8 TraesCS1B01G113200 chr1B 85.957 470 45 10 606 1075 131077018 131076570 2.250000e-132 483.0
9 TraesCS1B01G113200 chr1B 84.681 470 51 10 606 1075 131309023 131308575 2.280000e-122 449.0
10 TraesCS1B01G113200 chr1B 87.798 336 28 6 274 597 130742535 130742201 8.420000e-102 381.0
11 TraesCS1B01G113200 chr1B 87.278 338 27 10 272 597 131506027 131505694 5.070000e-99 372.0
12 TraesCS1B01G113200 chr1B 84.557 395 38 12 682 1075 130742102 130741730 1.820000e-98 370.0
13 TraesCS1B01G113200 chr1B 97.585 207 5 0 1 207 95226007 95226213 5.110000e-94 355.0
14 TraesCS1B01G113200 chr1B 97.573 206 5 0 1 206 571052832 571053037 1.840000e-93 353.0
15 TraesCS1B01G113200 chr1B 85.503 338 35 7 272 597 131309413 131309078 1.430000e-89 340.0
16 TraesCS1B01G113200 chr1B 87.372 293 33 4 307 597 131077363 131077073 2.390000e-87 333.0
17 TraesCS1B01G113200 chr1B 93.143 175 8 4 3658 3829 131502942 131502769 1.920000e-63 254.0
18 TraesCS1B01G113200 chr1B 84.058 276 21 6 944 1219 131309664 131309412 1.150000e-60 244.0
19 TraesCS1B01G113200 chr1B 83.273 275 24 5 944 1218 130742789 130742537 2.500000e-57 233.0
20 TraesCS1B01G113200 chr1B 87.582 153 12 4 3780 3926 130793871 130793720 1.990000e-38 171.0
21 TraesCS1B01G113200 chr1B 87.582 153 12 4 3780 3926 131583245 131583094 1.990000e-38 171.0
22 TraesCS1B01G113200 chr1B 95.699 93 4 0 2371 2463 130861457 130861365 2.590000e-32 150.0
23 TraesCS1B01G113200 chr1B 95.699 93 4 0 2371 2463 131602904 131602812 2.590000e-32 150.0
24 TraesCS1B01G113200 chr1B 90.476 105 10 0 4049 4153 131502585 131502481 5.600000e-29 139.0
25 TraesCS1B01G113200 chr1B 98.718 78 1 0 3430 3507 131503723 131503646 5.600000e-29 139.0
26 TraesCS1B01G113200 chr1B 88.889 108 8 3 3557 3660 131503127 131503020 3.370000e-26 130.0
27 TraesCS1B01G113200 chr1D 92.734 1913 89 15 944 2845 80006105 80004232 0.000000e+00 2717.0
28 TraesCS1B01G113200 chr1D 91.349 1965 89 22 944 2887 79950125 79948221 0.000000e+00 2612.0
29 TraesCS1B01G113200 chr1D 94.045 1058 47 8 2884 3932 79947637 79946587 0.000000e+00 1591.0
30 TraesCS1B01G113200 chr1D 91.496 976 44 13 2843 3783 80002803 80001832 0.000000e+00 1306.0
31 TraesCS1B01G113200 chr1D 87.179 273 30 3 3152 3423 80000471 80000203 5.220000e-79 305.0
32 TraesCS1B01G113200 chr1D 86.477 281 21 6 3516 3783 79947956 79947680 4.060000e-75 292.0
33 TraesCS1B01G113200 chr1D 89.542 153 13 2 3780 3932 79947586 79947437 1.520000e-44 191.0
34 TraesCS1B01G113200 chr1D 95.370 108 5 0 4046 4153 79946589 79946482 5.520000e-39 172.0
35 TraesCS1B01G113200 chr1D 87.582 153 12 4 3780 3926 80001764 80001613 1.990000e-38 171.0
36 TraesCS1B01G113200 chr1D 97.436 78 2 0 3430 3507 79948564 79948487 2.600000e-27 134.0
37 TraesCS1B01G113200 chr1A 91.046 1932 105 29 978 2887 98604579 98602694 0.000000e+00 2547.0
38 TraesCS1B01G113200 chr1A 85.532 235 25 4 3558 3783 98602651 98602417 1.930000e-58 237.0
39 TraesCS1B01G113200 chr3A 89.634 1640 122 13 944 2552 154742490 154740868 0.000000e+00 2043.0
40 TraesCS1B01G113200 chr3A 86.928 153 19 1 3780 3932 154740188 154740037 1.990000e-38 171.0
41 TraesCS1B01G113200 chr3B 89.275 1641 124 25 944 2552 199928618 199926998 0.000000e+00 2008.0
42 TraesCS1B01G113200 chr3B 90.225 1555 104 15 1035 2552 200365802 200367345 0.000000e+00 1986.0
43 TraesCS1B01G113200 chr3B 89.840 1250 93 14 944 2176 199704232 199703000 0.000000e+00 1574.0
44 TraesCS1B01G113200 chr3B 88.971 272 22 4 2887 3150 199701484 199701213 3.100000e-86 329.0
45 TraesCS1B01G113200 chr3B 80.052 381 58 12 3780 4153 200368007 200368376 2.460000e-67 267.0
46 TraesCS1B01G113200 chr3B 86.928 153 19 1 3780 3932 199701436 199701285 1.990000e-38 171.0
47 TraesCS1B01G113200 chr3B 85.000 120 16 2 3930 4049 315406918 315406801 2.030000e-23 121.0
48 TraesCS1B01G113200 chr3B 100.000 28 0 0 4022 4049 508248003 508248030 8.000000e-03 52.8
49 TraesCS1B01G113200 chr3D 90.397 1437 110 8 944 2369 136776209 136774790 0.000000e+00 1864.0
50 TraesCS1B01G113200 chr3D 90.074 272 19 4 2887 3150 136773789 136773518 3.070000e-91 346.0
51 TraesCS1B01G113200 chr3D 85.609 271 33 5 3152 3419 136772727 136772460 3.160000e-71 279.0
52 TraesCS1B01G113200 chr3D 85.990 207 8 5 2367 2552 136774621 136774415 7.040000e-48 202.0
53 TraesCS1B01G113200 chr3D 88.235 153 17 1 3780 3932 136773741 136773590 9.170000e-42 182.0
54 TraesCS1B01G113200 chr3D 94.059 101 6 0 3516 3616 136774143 136774043 2.000000e-33 154.0
55 TraesCS1B01G113200 chr3D 88.983 118 12 1 3931 4048 607000538 607000654 1.200000e-30 145.0
56 TraesCS1B01G113200 chr5B 98.529 204 3 0 1 204 296436635 296436838 1.100000e-95 361.0
57 TraesCS1B01G113200 chr5B 98.515 202 3 0 1 202 321868395 321868596 1.420000e-94 357.0
58 TraesCS1B01G113200 chr6B 98.522 203 3 0 1 203 160417073 160417275 3.950000e-95 359.0
59 TraesCS1B01G113200 chr6B 98.507 201 3 0 1 201 538909208 538909408 5.110000e-94 355.0
60 TraesCS1B01G113200 chr6B 78.795 415 50 15 202 579 144893730 144894143 1.150000e-60 244.0
61 TraesCS1B01G113200 chr6B 85.950 121 16 1 3931 4051 363665575 363665456 1.210000e-25 128.0
62 TraesCS1B01G113200 chr6B 82.787 122 19 2 3931 4051 422358488 422358368 1.580000e-19 108.0
63 TraesCS1B01G113200 chr4B 98.507 201 3 0 1 201 542493378 542493578 5.110000e-94 355.0
64 TraesCS1B01G113200 chr2B 97.573 206 5 0 1 206 537128301 537128096 1.840000e-93 353.0
65 TraesCS1B01G113200 chr2B 97.573 206 5 0 1 206 567543935 567543730 1.840000e-93 353.0
66 TraesCS1B01G113200 chr2D 81.030 427 50 15 202 597 4410905 4410479 1.120000e-80 311.0
67 TraesCS1B01G113200 chr2D 85.714 119 16 1 3930 4048 121007808 121007925 1.570000e-24 124.0
68 TraesCS1B01G113200 chr7B 79.692 325 45 10 203 507 708997372 708997049 9.040000e-52 215.0
69 TraesCS1B01G113200 chr7B 85.000 120 16 2 3929 4048 367017880 367017997 2.030000e-23 121.0
70 TraesCS1B01G113200 chr6D 89.431 123 9 4 3928 4048 48675623 48675743 7.190000e-33 152.0
71 TraesCS1B01G113200 chr4D 87.395 119 14 1 3930 4048 15768042 15768159 7.240000e-28 135.0
72 TraesCS1B01G113200 chr4D 86.441 118 10 3 3931 4048 461277558 461277447 1.570000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G113200 chr1B 131786727 131790879 4152 True 7670.000000 7670 100.000000 1 4153 1 chr1B.!!$R3 4152
1 TraesCS1B01G113200 chr1B 131129595 131130925 1330 True 1736.000000 1736 90.630000 2484 3783 1 chr1B.!!$R1 1299
2 TraesCS1B01G113200 chr1B 131380009 131381340 1331 True 1716.000000 1716 90.337000 2484 3783 1 chr1B.!!$R2 1299
3 TraesCS1B01G113200 chr1B 130793720 130795270 1550 True 965.500000 1760 89.262500 2484 3926 2 chr1B.!!$R5 1442
4 TraesCS1B01G113200 chr1B 130859480 130861457 1977 True 949.000000 1748 93.239500 2371 3783 2 chr1B.!!$R6 1412
5 TraesCS1B01G113200 chr1B 131502481 131506027 3546 True 723.666667 3308 91.935500 272 4153 6 chr1B.!!$R9 3881
6 TraesCS1B01G113200 chr1B 131601586 131602904 1318 True 536.000000 922 93.695000 2371 3145 2 chr1B.!!$R11 774
7 TraesCS1B01G113200 chr1B 131583094 131583972 878 True 475.500000 780 88.059500 3143 3926 2 chr1B.!!$R10 783
8 TraesCS1B01G113200 chr1B 131076570 131077363 793 True 408.000000 483 86.664500 307 1075 2 chr1B.!!$R7 768
9 TraesCS1B01G113200 chr1B 131308575 131309664 1089 True 344.333333 449 84.747333 272 1219 3 chr1B.!!$R8 947
10 TraesCS1B01G113200 chr1B 130741730 130742789 1059 True 328.000000 381 85.209333 274 1218 3 chr1B.!!$R4 944
11 TraesCS1B01G113200 chr1D 80000203 80006105 5902 True 1124.750000 2717 89.747750 944 3926 4 chr1D.!!$R2 2982
12 TraesCS1B01G113200 chr1D 79946482 79950125 3643 True 832.000000 2612 92.369833 944 4153 6 chr1D.!!$R1 3209
13 TraesCS1B01G113200 chr1A 98602417 98604579 2162 True 1392.000000 2547 88.289000 978 3783 2 chr1A.!!$R1 2805
14 TraesCS1B01G113200 chr3A 154740037 154742490 2453 True 1107.000000 2043 88.281000 944 3932 2 chr3A.!!$R1 2988
15 TraesCS1B01G113200 chr3B 199926998 199928618 1620 True 2008.000000 2008 89.275000 944 2552 1 chr3B.!!$R1 1608
16 TraesCS1B01G113200 chr3B 200365802 200368376 2574 False 1126.500000 1986 85.138500 1035 4153 2 chr3B.!!$F2 3118
17 TraesCS1B01G113200 chr3B 199701213 199704232 3019 True 691.333333 1574 88.579667 944 3932 3 chr3B.!!$R3 2988
18 TraesCS1B01G113200 chr3D 136772460 136776209 3749 True 504.500000 1864 89.060667 944 3932 6 chr3D.!!$R1 2988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.033601 AGCCTCTCTGATCTCGTGGT 60.034 55.0 0.00 0.00 0.00 4.16 F
137 138 0.035343 GTCCCTTGCCTCCTGTTACC 60.035 60.0 0.00 0.00 0.00 2.85 F
172 173 0.037734 CACTGTTTGGGACCCCCTAC 59.962 60.0 8.45 3.92 45.70 3.18 F
286 287 0.172803 GGTAGCACTGTGACCTACGG 59.827 60.0 12.86 0.00 41.64 4.02 F
677 736 0.387929 AAGAGGTCTTCACGTTCGCA 59.612 50.0 0.00 0.00 0.00 5.10 F
763 822 0.555769 GGAATCCCACCTATGCCCAA 59.444 55.0 0.00 0.00 0.00 4.12 F
1023 1082 0.949397 AAAAGGAAAGCGTTCGACCC 59.051 50.0 6.29 0.00 34.28 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 2042 1.082104 GCGGTTCTTGCGGTTCTTG 60.082 57.895 0.00 0.0 0.00 3.02 R
2059 2629 1.076559 TTATCGCTCGGGGGAGTCA 60.077 57.895 8.45 0.0 37.81 3.41 R
2263 3320 3.131478 AACAATAGCCGGTGCCGC 61.131 61.111 1.90 1.2 38.69 6.53 R
2510 4336 1.899814 TGAAGGATCCACAGCTACGTT 59.100 47.619 15.82 0.0 0.00 3.99 R
2710 4539 2.479837 TGAGGCACAGAAACTAACACG 58.520 47.619 0.00 0.0 0.00 4.49 R
2726 4555 6.251471 AGGGATTAATCCTGCAATAATGAGG 58.749 40.000 29.24 0.0 46.35 3.86 R
3191 7065 0.037734 AGGGGTGCGGTAAGAAAAGG 59.962 55.000 0.00 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.974265 TAGCCTCTCTGATCTCGTGG 58.026 55.000 0.00 0.00 0.00 4.94
22 23 0.033601 AGCCTCTCTGATCTCGTGGT 60.034 55.000 0.00 0.00 0.00 4.16
23 24 1.213182 AGCCTCTCTGATCTCGTGGTA 59.787 52.381 0.00 0.00 0.00 3.25
24 25 1.606668 GCCTCTCTGATCTCGTGGTAG 59.393 57.143 0.00 0.00 0.00 3.18
25 26 2.746803 GCCTCTCTGATCTCGTGGTAGA 60.747 54.545 0.00 0.00 0.00 2.59
26 27 3.750371 CCTCTCTGATCTCGTGGTAGAT 58.250 50.000 0.00 0.00 38.95 1.98
35 36 4.703645 TCTCGTGGTAGATCAACTCTTG 57.296 45.455 0.00 0.00 35.28 3.02
36 37 4.079970 TCTCGTGGTAGATCAACTCTTGT 58.920 43.478 0.00 0.00 35.28 3.16
37 38 5.250982 TCTCGTGGTAGATCAACTCTTGTA 58.749 41.667 0.00 0.00 35.28 2.41
38 39 5.123502 TCTCGTGGTAGATCAACTCTTGTAC 59.876 44.000 0.00 0.00 35.28 2.90
39 40 5.008331 TCGTGGTAGATCAACTCTTGTACT 58.992 41.667 0.00 0.00 35.28 2.73
40 41 6.175471 TCGTGGTAGATCAACTCTTGTACTA 58.825 40.000 0.00 0.00 35.28 1.82
41 42 6.093219 TCGTGGTAGATCAACTCTTGTACTAC 59.907 42.308 0.00 0.00 38.38 2.73
42 43 6.562518 GTGGTAGATCAACTCTTGTACTACC 58.437 44.000 20.24 20.24 46.66 3.18
43 44 5.655532 TGGTAGATCAACTCTTGTACTACCC 59.344 44.000 22.03 13.32 46.37 3.69
44 45 5.655532 GGTAGATCAACTCTTGTACTACCCA 59.344 44.000 18.37 0.00 44.31 4.51
45 46 6.324254 GGTAGATCAACTCTTGTACTACCCAT 59.676 42.308 18.37 0.00 44.31 4.00
46 47 7.504911 GGTAGATCAACTCTTGTACTACCCATA 59.495 40.741 18.37 0.00 44.31 2.74
47 48 9.080097 GTAGATCAACTCTTGTACTACCCATAT 57.920 37.037 0.00 0.00 36.03 1.78
48 49 8.184304 AGATCAACTCTTGTACTACCCATATC 57.816 38.462 0.00 0.00 0.00 1.63
49 50 7.785028 AGATCAACTCTTGTACTACCCATATCA 59.215 37.037 0.00 0.00 0.00 2.15
50 51 7.914427 TCAACTCTTGTACTACCCATATCAT 57.086 36.000 0.00 0.00 0.00 2.45
51 52 7.952671 TCAACTCTTGTACTACCCATATCATC 58.047 38.462 0.00 0.00 0.00 2.92
52 53 7.563556 TCAACTCTTGTACTACCCATATCATCA 59.436 37.037 0.00 0.00 0.00 3.07
53 54 7.914427 ACTCTTGTACTACCCATATCATCAA 57.086 36.000 0.00 0.00 0.00 2.57
54 55 8.497910 ACTCTTGTACTACCCATATCATCAAT 57.502 34.615 0.00 0.00 0.00 2.57
55 56 9.601810 ACTCTTGTACTACCCATATCATCAATA 57.398 33.333 0.00 0.00 0.00 1.90
66 67 9.758021 ACCCATATCATCAATATTAATCAAGCA 57.242 29.630 0.00 0.00 0.00 3.91
76 77 9.905713 TCAATATTAATCAAGCAGAAGTAGGTT 57.094 29.630 0.00 0.00 0.00 3.50
82 83 6.819397 ATCAAGCAGAAGTAGGTTTTTACC 57.181 37.500 0.00 0.00 0.00 2.85
83 84 5.937111 TCAAGCAGAAGTAGGTTTTTACCT 58.063 37.500 2.01 2.01 43.62 3.08
84 85 5.995897 TCAAGCAGAAGTAGGTTTTTACCTC 59.004 40.000 0.00 0.00 41.12 3.85
85 86 4.907809 AGCAGAAGTAGGTTTTTACCTCC 58.092 43.478 0.00 0.00 41.12 4.30
86 87 4.349930 AGCAGAAGTAGGTTTTTACCTCCA 59.650 41.667 0.00 0.00 41.12 3.86
87 88 5.014228 AGCAGAAGTAGGTTTTTACCTCCAT 59.986 40.000 0.00 0.00 41.12 3.41
88 89 5.354513 GCAGAAGTAGGTTTTTACCTCCATC 59.645 44.000 0.00 0.00 41.12 3.51
89 90 5.581085 CAGAAGTAGGTTTTTACCTCCATCG 59.419 44.000 0.00 0.00 41.12 3.84
90 91 5.482878 AGAAGTAGGTTTTTACCTCCATCGA 59.517 40.000 0.00 0.00 41.12 3.59
91 92 5.340439 AGTAGGTTTTTACCTCCATCGAG 57.660 43.478 0.00 0.00 41.12 4.04
92 93 5.021458 AGTAGGTTTTTACCTCCATCGAGA 58.979 41.667 0.00 0.00 41.12 4.04
93 94 4.473477 AGGTTTTTACCTCCATCGAGAG 57.527 45.455 0.00 0.00 38.52 3.20
99 100 3.610669 CTCCATCGAGAGGGCCCG 61.611 72.222 18.44 4.06 38.52 6.13
100 101 4.137615 TCCATCGAGAGGGCCCGA 62.138 66.667 18.44 10.63 39.25 5.14
101 102 3.154473 CCATCGAGAGGGCCCGAA 61.154 66.667 18.44 1.01 38.36 4.30
102 103 2.107141 CATCGAGAGGGCCCGAAC 59.893 66.667 18.44 12.45 38.36 3.95
103 104 3.155167 ATCGAGAGGGCCCGAACC 61.155 66.667 18.44 7.31 38.36 3.62
104 105 3.680920 ATCGAGAGGGCCCGAACCT 62.681 63.158 18.44 12.55 42.18 3.50
105 106 4.148825 CGAGAGGGCCCGAACCTG 62.149 72.222 18.44 1.23 38.79 4.00
106 107 3.787001 GAGAGGGCCCGAACCTGG 61.787 72.222 18.44 0.00 38.79 4.45
114 115 3.970205 CCCGAACCTGGGTAAACAT 57.030 52.632 0.00 0.00 44.76 2.71
115 116 2.209690 CCCGAACCTGGGTAAACATT 57.790 50.000 0.00 0.00 44.76 2.71
116 117 1.816224 CCCGAACCTGGGTAAACATTG 59.184 52.381 0.00 0.00 44.76 2.82
117 118 2.510613 CCGAACCTGGGTAAACATTGT 58.489 47.619 0.00 0.00 0.00 2.71
118 119 2.227865 CCGAACCTGGGTAAACATTGTG 59.772 50.000 0.00 0.00 0.00 3.33
119 120 2.882137 CGAACCTGGGTAAACATTGTGT 59.118 45.455 0.00 0.00 0.00 3.72
120 121 3.058501 CGAACCTGGGTAAACATTGTGTC 60.059 47.826 0.00 0.00 0.00 3.67
121 122 2.871453 ACCTGGGTAAACATTGTGTCC 58.129 47.619 0.00 0.00 0.00 4.02
122 123 2.167662 CCTGGGTAAACATTGTGTCCC 58.832 52.381 13.79 13.79 35.85 4.46
123 124 2.225017 CCTGGGTAAACATTGTGTCCCT 60.225 50.000 18.51 0.00 36.23 4.20
124 125 3.496331 CTGGGTAAACATTGTGTCCCTT 58.504 45.455 18.51 2.09 36.23 3.95
125 126 3.226777 TGGGTAAACATTGTGTCCCTTG 58.773 45.455 18.51 0.00 36.23 3.61
126 127 2.029380 GGGTAAACATTGTGTCCCTTGC 60.029 50.000 13.54 0.00 32.89 4.01
127 128 2.029380 GGTAAACATTGTGTCCCTTGCC 60.029 50.000 0.00 0.00 0.00 4.52
128 129 2.086610 AAACATTGTGTCCCTTGCCT 57.913 45.000 0.00 0.00 0.00 4.75
129 130 1.620822 AACATTGTGTCCCTTGCCTC 58.379 50.000 0.00 0.00 0.00 4.70
130 131 0.251341 ACATTGTGTCCCTTGCCTCC 60.251 55.000 0.00 0.00 0.00 4.30
131 132 0.038744 CATTGTGTCCCTTGCCTCCT 59.961 55.000 0.00 0.00 0.00 3.69
132 133 0.038744 ATTGTGTCCCTTGCCTCCTG 59.961 55.000 0.00 0.00 0.00 3.86
133 134 1.352622 TTGTGTCCCTTGCCTCCTGT 61.353 55.000 0.00 0.00 0.00 4.00
134 135 1.352622 TGTGTCCCTTGCCTCCTGTT 61.353 55.000 0.00 0.00 0.00 3.16
135 136 0.690762 GTGTCCCTTGCCTCCTGTTA 59.309 55.000 0.00 0.00 0.00 2.41
136 137 0.690762 TGTCCCTTGCCTCCTGTTAC 59.309 55.000 0.00 0.00 0.00 2.50
137 138 0.035343 GTCCCTTGCCTCCTGTTACC 60.035 60.000 0.00 0.00 0.00 2.85
138 139 0.474854 TCCCTTGCCTCCTGTTACCA 60.475 55.000 0.00 0.00 0.00 3.25
139 140 0.625849 CCCTTGCCTCCTGTTACCAT 59.374 55.000 0.00 0.00 0.00 3.55
140 141 1.005924 CCCTTGCCTCCTGTTACCATT 59.994 52.381 0.00 0.00 0.00 3.16
141 142 2.094675 CCTTGCCTCCTGTTACCATTG 58.905 52.381 0.00 0.00 0.00 2.82
142 143 2.290896 CCTTGCCTCCTGTTACCATTGA 60.291 50.000 0.00 0.00 0.00 2.57
143 144 3.624777 CTTGCCTCCTGTTACCATTGAT 58.375 45.455 0.00 0.00 0.00 2.57
144 145 3.281727 TGCCTCCTGTTACCATTGATC 57.718 47.619 0.00 0.00 0.00 2.92
145 146 2.092429 TGCCTCCTGTTACCATTGATCC 60.092 50.000 0.00 0.00 0.00 3.36
146 147 2.173569 GCCTCCTGTTACCATTGATCCT 59.826 50.000 0.00 0.00 0.00 3.24
147 148 3.391296 GCCTCCTGTTACCATTGATCCTA 59.609 47.826 0.00 0.00 0.00 2.94
148 149 4.141482 GCCTCCTGTTACCATTGATCCTAA 60.141 45.833 0.00 0.00 0.00 2.69
149 150 5.615289 CCTCCTGTTACCATTGATCCTAAG 58.385 45.833 0.00 0.00 0.00 2.18
150 151 5.366768 CCTCCTGTTACCATTGATCCTAAGA 59.633 44.000 0.00 0.00 0.00 2.10
151 152 6.235231 TCCTGTTACCATTGATCCTAAGAC 57.765 41.667 0.00 0.00 0.00 3.01
152 153 5.050490 CCTGTTACCATTGATCCTAAGACG 58.950 45.833 0.00 0.00 0.00 4.18
153 154 4.439057 TGTTACCATTGATCCTAAGACGC 58.561 43.478 0.00 0.00 0.00 5.19
154 155 4.081365 TGTTACCATTGATCCTAAGACGCA 60.081 41.667 0.00 0.00 0.00 5.24
155 156 2.906354 ACCATTGATCCTAAGACGCAC 58.094 47.619 0.00 0.00 0.00 5.34
156 157 2.501723 ACCATTGATCCTAAGACGCACT 59.498 45.455 0.00 0.00 0.00 4.40
157 158 2.868583 CCATTGATCCTAAGACGCACTG 59.131 50.000 0.00 0.00 0.00 3.66
158 159 3.525537 CATTGATCCTAAGACGCACTGT 58.474 45.455 0.00 0.00 0.00 3.55
159 160 3.678056 TTGATCCTAAGACGCACTGTT 57.322 42.857 0.00 0.00 0.00 3.16
160 161 3.678056 TGATCCTAAGACGCACTGTTT 57.322 42.857 0.00 0.00 0.00 2.83
161 162 3.325870 TGATCCTAAGACGCACTGTTTG 58.674 45.455 0.00 0.00 0.00 2.93
162 163 2.163818 TCCTAAGACGCACTGTTTGG 57.836 50.000 0.00 0.00 0.00 3.28
163 164 1.156736 CCTAAGACGCACTGTTTGGG 58.843 55.000 0.00 0.00 43.87 4.12
164 165 1.270625 CCTAAGACGCACTGTTTGGGA 60.271 52.381 0.00 0.00 40.70 4.37
165 166 1.798813 CTAAGACGCACTGTTTGGGAC 59.201 52.381 0.00 0.00 40.70 4.46
166 167 0.818040 AAGACGCACTGTTTGGGACC 60.818 55.000 0.00 0.00 40.70 4.46
167 168 2.203294 ACGCACTGTTTGGGACCC 60.203 61.111 2.45 2.45 40.70 4.46
168 169 2.983592 CGCACTGTTTGGGACCCC 60.984 66.667 8.45 2.69 40.70 4.95
169 170 2.600470 GCACTGTTTGGGACCCCC 60.600 66.667 8.45 0.00 45.71 5.40
170 171 3.146828 GCACTGTTTGGGACCCCCT 62.147 63.158 8.45 0.00 45.70 4.79
171 172 1.785353 GCACTGTTTGGGACCCCCTA 61.785 60.000 8.45 0.00 45.70 3.53
172 173 0.037734 CACTGTTTGGGACCCCCTAC 59.962 60.000 8.45 3.92 45.70 3.18
173 174 1.138228 ACTGTTTGGGACCCCCTACC 61.138 60.000 8.45 0.00 45.70 3.18
174 175 1.853565 TGTTTGGGACCCCCTACCC 60.854 63.158 8.45 0.00 45.70 3.69
178 179 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
179 180 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
180 181 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
181 182 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
182 183 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
183 184 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
184 185 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
185 186 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
186 187 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
187 188 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
189 190 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
190 191 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
191 192 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
192 193 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
193 194 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
194 195 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
195 196 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
196 197 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
203 204 1.278637 GGTTTTGACACCGACAGCG 59.721 57.895 0.00 0.00 37.24 5.18
225 226 3.776781 CGACCGGCATGGGTGGTA 61.777 66.667 0.00 0.00 44.64 3.25
226 227 2.672295 GACCGGCATGGGTGGTAA 59.328 61.111 0.00 0.00 44.64 2.85
227 228 1.747745 GACCGGCATGGGTGGTAAC 60.748 63.158 0.00 0.00 44.64 2.50
228 229 2.822255 CCGGCATGGGTGGTAACG 60.822 66.667 0.00 0.00 42.51 3.18
229 230 2.046700 CGGCATGGGTGGTAACGT 60.047 61.111 0.00 0.00 42.51 3.99
230 231 2.395360 CGGCATGGGTGGTAACGTG 61.395 63.158 0.00 0.00 42.51 4.49
231 232 1.003112 GGCATGGGTGGTAACGTGA 60.003 57.895 0.00 0.00 42.51 4.35
232 233 1.303091 GGCATGGGTGGTAACGTGAC 61.303 60.000 0.00 0.00 42.51 3.67
233 234 1.303091 GCATGGGTGGTAACGTGACC 61.303 60.000 15.94 15.94 40.21 4.02
235 236 2.047939 GGGTGGTAACGTGACCCG 60.048 66.667 19.93 0.00 40.20 5.28
236 237 2.047939 GGTGGTAACGTGACCCGG 60.048 66.667 19.93 0.00 42.24 5.73
237 238 2.047939 GTGGTAACGTGACCCGGG 60.048 66.667 22.25 22.25 42.24 5.73
238 239 3.312718 TGGTAACGTGACCCGGGG 61.313 66.667 27.92 12.73 42.24 5.73
239 240 2.996734 GGTAACGTGACCCGGGGA 60.997 66.667 27.92 8.15 42.24 4.81
240 241 2.582493 GGTAACGTGACCCGGGGAA 61.582 63.158 27.92 9.81 42.24 3.97
241 242 1.598517 GTAACGTGACCCGGGGAAT 59.401 57.895 27.92 2.66 42.24 3.01
242 243 0.741927 GTAACGTGACCCGGGGAATG 60.742 60.000 27.92 19.75 42.24 2.67
243 244 1.901654 TAACGTGACCCGGGGAATGG 61.902 60.000 27.92 12.37 42.24 3.16
244 245 3.712907 CGTGACCCGGGGAATGGT 61.713 66.667 27.92 0.68 37.64 3.55
245 246 2.045340 GTGACCCGGGGAATGGTG 60.045 66.667 27.92 0.00 34.20 4.17
246 247 2.204013 TGACCCGGGGAATGGTGA 60.204 61.111 27.92 0.00 34.20 4.02
247 248 2.297895 TGACCCGGGGAATGGTGAG 61.298 63.158 27.92 0.00 34.20 3.51
248 249 3.699134 GACCCGGGGAATGGTGAGC 62.699 68.421 27.92 0.00 34.20 4.26
249 250 4.856801 CCCGGGGAATGGTGAGCG 62.857 72.222 14.71 0.00 0.00 5.03
286 287 0.172803 GGTAGCACTGTGACCTACGG 59.827 60.000 12.86 0.00 41.64 4.02
299 301 3.567478 CTACGGTGTGGTGAGCGCA 62.567 63.158 11.47 0.00 40.49 6.09
339 351 1.345415 CCAAGGAAAGCTTGGTGCAAT 59.655 47.619 0.00 0.00 44.55 3.56
347 359 4.292145 TTGGTGCAATGGCCCCGA 62.292 61.111 0.00 0.00 40.95 5.14
468 481 2.416893 CCTCTTTTAAGTCTCGCCTTGC 59.583 50.000 0.00 0.00 0.00 4.01
490 503 2.322830 CGTCCGTCGTGTCTCTCCA 61.323 63.158 0.00 0.00 34.52 3.86
494 507 0.956410 CCGTCGTGTCTCTCCACTCT 60.956 60.000 0.00 0.00 33.07 3.24
505 518 0.605589 CTCCACTCTTTGACGCCTCT 59.394 55.000 0.00 0.00 0.00 3.69
513 526 1.001406 CTTTGACGCCTCTGAGAAGGT 59.999 52.381 6.17 0.57 38.79 3.50
529 542 3.901844 AGAAGGTGAGGTTGCTAACACTA 59.098 43.478 0.00 0.00 34.28 2.74
534 547 4.262506 GGTGAGGTTGCTAACACTAGAGTT 60.263 45.833 10.48 10.48 34.28 3.01
539 552 3.040147 TGCTAACACTAGAGTTGGTGC 57.960 47.619 14.91 15.01 39.21 5.01
597 610 2.646175 CCGGGCAAGAAGAGGACGA 61.646 63.158 0.00 0.00 0.00 4.20
598 611 1.517832 CGGGCAAGAAGAGGACGAT 59.482 57.895 0.00 0.00 0.00 3.73
599 612 0.807667 CGGGCAAGAAGAGGACGATG 60.808 60.000 0.00 0.00 0.00 3.84
600 613 0.462759 GGGCAAGAAGAGGACGATGG 60.463 60.000 0.00 0.00 0.00 3.51
601 614 0.537188 GGCAAGAAGAGGACGATGGA 59.463 55.000 0.00 0.00 0.00 3.41
614 673 1.837538 CGATGGACGTTGTTTGCCGT 61.838 55.000 0.00 0.00 40.54 5.68
618 677 0.590481 GGACGTTGTTTGCCGTGTTC 60.590 55.000 0.00 0.00 37.44 3.18
633 692 4.953010 TTCGCCAGCAAGCTGCCA 62.953 61.111 16.33 0.00 46.52 4.92
635 694 3.755628 CGCCAGCAAGCTGCCATT 61.756 61.111 16.33 0.00 46.52 3.16
677 736 0.387929 AAGAGGTCTTCACGTTCGCA 59.612 50.000 0.00 0.00 0.00 5.10
680 739 0.603569 AGGTCTTCACGTTCGCAGAT 59.396 50.000 0.00 0.00 35.04 2.90
691 750 3.250323 CGCAGATGACAGACGCCG 61.250 66.667 0.00 0.00 0.00 6.46
739 798 2.480555 GCGGACGCCACATTTGAG 59.519 61.111 5.20 0.00 34.56 3.02
741 800 1.573829 GCGGACGCCACATTTGAGAA 61.574 55.000 5.20 0.00 34.56 2.87
742 801 0.871722 CGGACGCCACATTTGAGAAA 59.128 50.000 0.00 0.00 0.00 2.52
754 813 5.014808 CATTTGAGAAATGGAATCCCACC 57.985 43.478 0.00 0.00 46.98 4.61
763 822 0.555769 GGAATCCCACCTATGCCCAA 59.444 55.000 0.00 0.00 0.00 4.12
769 828 2.091555 TCCCACCTATGCCCAAATAACC 60.092 50.000 0.00 0.00 0.00 2.85
783 842 8.865090 TGCCCAAATAACCCACATAAATTATAG 58.135 33.333 0.00 0.00 0.00 1.31
790 849 7.582667 AACCCACATAAATTATAGTGAAGCC 57.417 36.000 13.34 0.00 33.99 4.35
801 860 4.989875 ATAGTGAAGCCTTGGCTATCAT 57.010 40.909 15.12 11.78 0.00 2.45
802 861 3.205784 AGTGAAGCCTTGGCTATCATC 57.794 47.619 15.12 9.14 0.00 2.92
806 865 2.875094 AGCCTTGGCTATCATCCATC 57.125 50.000 13.08 0.00 32.92 3.51
818 877 5.981315 GCTATCATCCATCAAAATGTGTTGG 59.019 40.000 0.00 0.00 45.25 3.77
832 891 4.374689 TGTGTTGGAATTAAGTGGGCTA 57.625 40.909 0.00 0.00 0.00 3.93
862 921 2.695666 CACCTACTATCAGTCCCACCTG 59.304 54.545 0.00 0.00 0.00 4.00
863 922 2.315155 ACCTACTATCAGTCCCACCTGT 59.685 50.000 0.00 0.00 34.02 4.00
873 932 1.189524 TCCCACCTGTAACCTGACCG 61.190 60.000 0.00 0.00 0.00 4.79
875 934 1.736645 CACCTGTAACCTGACCGCG 60.737 63.158 0.00 0.00 0.00 6.46
1023 1082 0.949397 AAAAGGAAAGCGTTCGACCC 59.051 50.000 6.29 0.00 34.28 4.46
1054 1114 1.745264 CGCAGATTCCCCTCTCCTC 59.255 63.158 0.00 0.00 0.00 3.71
1059 1119 1.458588 ATTCCCCTCTCCTCTCCGC 60.459 63.158 0.00 0.00 0.00 5.54
1834 2081 2.684843 CGCAGGCAGAGCAAGAACC 61.685 63.158 0.00 0.00 0.00 3.62
2059 2629 2.020694 GCTGACCTGCTACAATGCCAT 61.021 52.381 0.00 0.00 0.00 4.40
2469 4293 2.293399 GCTTTCTGTTGGAACCGACATT 59.707 45.455 13.47 0.00 39.36 2.71
2622 4450 5.163824 TGTGATCGAATTCAGTGAGCATTTC 60.164 40.000 6.22 0.00 30.01 2.17
2710 4539 6.214191 TGAAGAGTGAGTGATTATCCTGAC 57.786 41.667 0.00 0.00 0.00 3.51
2726 4555 2.221055 CCTGACGTGTTAGTTTCTGTGC 59.779 50.000 0.00 0.00 0.00 4.57
2915 6777 8.500753 TTACTGTTATTGACACAACAAAGTCT 57.499 30.769 3.98 0.00 34.43 3.24
2933 6795 5.171339 AGTCTTGCCATCAATAGTCACTT 57.829 39.130 0.00 0.00 0.00 3.16
2979 6843 9.726438 ATGTAGAGCTTACTGAAGTAAAACAAT 57.274 29.630 4.57 0.00 39.70 2.71
3128 7001 9.099454 CAAGTAGTACCTAAACCAATTGATCTC 57.901 37.037 7.12 0.00 0.00 2.75
3191 7065 4.387256 TGTTTGTTTGCTGTTGTTGCTTAC 59.613 37.500 0.00 0.00 0.00 2.34
3202 7076 6.139048 TGTTGTTGCTTACCTTTTCTTACC 57.861 37.500 0.00 0.00 0.00 2.85
3203 7077 5.209977 GTTGTTGCTTACCTTTTCTTACCG 58.790 41.667 0.00 0.00 0.00 4.02
3210 7084 0.037734 CCTTTTCTTACCGCACCCCT 59.962 55.000 0.00 0.00 0.00 4.79
3217 7091 3.148412 TCTTACCGCACCCCTTTAAAAC 58.852 45.455 0.00 0.00 0.00 2.43
3225 7099 4.698304 CGCACCCCTTTAAAACTTATCTGA 59.302 41.667 0.00 0.00 0.00 3.27
3268 7142 4.334481 AGGGTATTTACGTACTTGCATTGC 59.666 41.667 0.46 0.46 0.00 3.56
3276 7150 2.799978 CGTACTTGCATTGCGATGGATA 59.200 45.455 15.85 0.48 33.35 2.59
3285 7159 5.149273 GCATTGCGATGGATATGTTACAAG 58.851 41.667 15.85 0.00 33.72 3.16
3410 7286 9.727627 GCTATAGAAAGAAGAATCAATGTTTGG 57.272 33.333 3.21 0.00 0.00 3.28
3428 7304 6.298361 TGTTTGGAGTCTGAATCTGAAATCA 58.702 36.000 5.02 1.59 0.00 2.57
3432 7308 4.749099 GGAGTCTGAATCTGAAATCATCCG 59.251 45.833 5.02 0.00 0.00 4.18
3764 7870 6.719370 TCTGGTTTGAATTAGCAATGTACCTT 59.281 34.615 0.00 0.00 30.91 3.50
3862 8158 7.275888 AGCTGTCATAATGTTCAAGTCAAAA 57.724 32.000 0.00 0.00 0.00 2.44
3865 8161 8.981647 GCTGTCATAATGTTCAAGTCAAAATTT 58.018 29.630 0.00 0.00 0.00 1.82
3915 8211 1.000843 TGGTCGTGACATGTCAAGAGG 59.999 52.381 35.01 22.15 45.83 3.69
3930 8226 7.482169 TGTCAAGAGGAGTGTTCTATATTGT 57.518 36.000 0.00 0.00 0.00 2.71
3931 8227 8.589701 TGTCAAGAGGAGTGTTCTATATTGTA 57.410 34.615 0.00 0.00 0.00 2.41
3932 8228 8.467598 TGTCAAGAGGAGTGTTCTATATTGTAC 58.532 37.037 0.00 0.00 0.00 2.90
3933 8229 8.688151 GTCAAGAGGAGTGTTCTATATTGTACT 58.312 37.037 0.00 0.00 0.00 2.73
3934 8230 8.904834 TCAAGAGGAGTGTTCTATATTGTACTC 58.095 37.037 0.00 0.00 35.13 2.59
3937 8233 6.980416 GGAGTGTTCTATATTGTACTCCCT 57.020 41.667 17.80 4.89 45.23 4.20
3938 8234 6.983984 GGAGTGTTCTATATTGTACTCCCTC 58.016 44.000 17.80 10.57 45.23 4.30
3939 8235 6.015265 GGAGTGTTCTATATTGTACTCCCTCC 60.015 46.154 17.80 13.80 45.23 4.30
3940 8236 5.535406 AGTGTTCTATATTGTACTCCCTCCG 59.465 44.000 0.00 0.00 0.00 4.63
3941 8237 5.301298 GTGTTCTATATTGTACTCCCTCCGT 59.699 44.000 0.00 0.00 0.00 4.69
3942 8238 5.533903 TGTTCTATATTGTACTCCCTCCGTC 59.466 44.000 0.00 0.00 0.00 4.79
3943 8239 4.660168 TCTATATTGTACTCCCTCCGTCC 58.340 47.826 0.00 0.00 0.00 4.79
3944 8240 1.683943 TATTGTACTCCCTCCGTCCG 58.316 55.000 0.00 0.00 0.00 4.79
3945 8241 1.041447 ATTGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
3946 8242 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
3947 8243 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3948 8244 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3949 8245 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3950 8246 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3951 8247 0.674534 CTCCCTCCGTCCGGAAATAG 59.325 60.000 5.23 3.15 44.66 1.73
3952 8248 0.032813 TCCCTCCGTCCGGAAATAGT 60.033 55.000 5.23 0.00 44.66 2.12
3953 8249 0.828677 CCCTCCGTCCGGAAATAGTT 59.171 55.000 5.23 0.00 44.66 2.24
3954 8250 1.472728 CCCTCCGTCCGGAAATAGTTG 60.473 57.143 5.23 0.00 44.66 3.16
3955 8251 1.206371 CCTCCGTCCGGAAATAGTTGT 59.794 52.381 5.23 0.00 44.66 3.32
3956 8252 2.537401 CTCCGTCCGGAAATAGTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3957 8253 1.135315 TCCGTCCGGAAATAGTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3958 8254 1.274596 CGTCCGGAAATAGTTGTCGG 58.725 55.000 5.23 7.67 41.80 4.79
3959 8255 1.135315 CGTCCGGAAATAGTTGTCGGA 60.135 52.381 5.23 11.39 46.06 4.55
3960 8256 2.953466 TCCGGAAATAGTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3961 8257 2.449464 TCCGGAAATAGTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
3962 8258 2.827322 TCCGGAAATAGTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
3963 8259 3.258872 TCCGGAAATAGTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3964 8260 4.081309 TCCGGAAATAGTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
3965 8261 5.127519 TCCGGAAATAGTTGTCGGAGAAATA 59.872 40.000 0.00 0.00 43.84 1.40
3966 8262 5.989777 CCGGAAATAGTTGTCGGAGAAATAT 59.010 40.000 0.00 2.46 42.94 1.28
3967 8263 7.014518 TCCGGAAATAGTTGTCGGAGAAATATA 59.985 37.037 0.00 0.00 43.84 0.86
3968 8264 7.817962 CCGGAAATAGTTGTCGGAGAAATATAT 59.182 37.037 8.05 0.00 42.94 0.86
3969 8265 9.850628 CGGAAATAGTTGTCGGAGAAATATATA 57.149 33.333 8.05 0.00 39.69 0.86
3976 8272 9.273016 AGTTGTCGGAGAAATATATACAAATGG 57.727 33.333 0.00 0.00 39.69 3.16
3977 8273 9.268268 GTTGTCGGAGAAATATATACAAATGGA 57.732 33.333 0.00 0.00 39.69 3.41
3979 8275 9.435688 TGTCGGAGAAATATATACAAATGGATG 57.564 33.333 0.00 0.00 39.69 3.51
3980 8276 9.436957 GTCGGAGAAATATATACAAATGGATGT 57.563 33.333 0.00 0.00 39.69 3.06
3995 8291 9.975218 ACAAATGGATGTACCTAGAACTAAAAT 57.025 29.630 0.00 0.00 39.86 1.82
4001 8297 9.408069 GGATGTACCTAGAACTAAAATATGTCG 57.592 37.037 0.00 0.00 35.41 4.35
4004 8300 9.399797 TGTACCTAGAACTAAAATATGTCGAGA 57.600 33.333 0.00 0.00 0.00 4.04
4075 8483 8.884124 TCCCATTAGTTCTCTGAATTTTCAAT 57.116 30.769 0.00 0.00 36.64 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.690497 CCACGAGATCAGAGAGGCTAAA 59.310 50.000 0.00 0.00 0.00 1.85
2 3 1.213182 ACCACGAGATCAGAGAGGCTA 59.787 52.381 0.00 0.00 0.00 3.93
4 5 1.606668 CTACCACGAGATCAGAGAGGC 59.393 57.143 0.00 0.00 0.00 4.70
5 6 3.201353 TCTACCACGAGATCAGAGAGG 57.799 52.381 0.00 0.00 0.00 3.69
13 14 4.707448 ACAAGAGTTGATCTACCACGAGAT 59.293 41.667 3.54 0.00 37.23 2.75
14 15 4.079970 ACAAGAGTTGATCTACCACGAGA 58.920 43.478 3.54 0.00 37.23 4.04
15 16 4.442375 ACAAGAGTTGATCTACCACGAG 57.558 45.455 3.54 1.07 37.23 4.18
16 17 5.008331 AGTACAAGAGTTGATCTACCACGA 58.992 41.667 3.54 0.00 37.23 4.35
17 18 5.312120 AGTACAAGAGTTGATCTACCACG 57.688 43.478 3.54 0.00 37.23 4.94
18 19 6.562518 GGTAGTACAAGAGTTGATCTACCAC 58.437 44.000 23.36 0.00 46.30 4.16
19 20 6.770746 GGTAGTACAAGAGTTGATCTACCA 57.229 41.667 23.36 0.00 46.30 3.25
20 21 5.655532 TGGGTAGTACAAGAGTTGATCTACC 59.344 44.000 21.89 21.89 46.30 3.18
21 22 6.770746 TGGGTAGTACAAGAGTTGATCTAC 57.229 41.667 2.06 0.00 37.23 2.59
22 23 9.298250 GATATGGGTAGTACAAGAGTTGATCTA 57.702 37.037 2.06 0.00 37.23 1.98
23 24 7.785028 TGATATGGGTAGTACAAGAGTTGATCT 59.215 37.037 2.06 0.00 41.27 2.75
24 25 7.952671 TGATATGGGTAGTACAAGAGTTGATC 58.047 38.462 2.06 0.00 0.00 2.92
25 26 7.914427 TGATATGGGTAGTACAAGAGTTGAT 57.086 36.000 2.06 0.00 0.00 2.57
26 27 7.563556 TGATGATATGGGTAGTACAAGAGTTGA 59.436 37.037 2.06 0.00 0.00 3.18
27 28 7.726216 TGATGATATGGGTAGTACAAGAGTTG 58.274 38.462 2.06 0.00 0.00 3.16
28 29 7.914427 TGATGATATGGGTAGTACAAGAGTT 57.086 36.000 2.06 0.00 0.00 3.01
29 30 7.914427 TTGATGATATGGGTAGTACAAGAGT 57.086 36.000 2.06 0.00 0.00 3.24
40 41 9.758021 TGCTTGATTAATATTGATGATATGGGT 57.242 29.630 0.00 0.00 31.27 4.51
50 51 9.905713 AACCTACTTCTGCTTGATTAATATTGA 57.094 29.630 0.00 0.00 0.00 2.57
56 57 8.789762 GGTAAAAACCTACTTCTGCTTGATTAA 58.210 33.333 0.00 0.00 0.00 1.40
57 58 8.161425 AGGTAAAAACCTACTTCTGCTTGATTA 58.839 33.333 0.00 0.00 38.58 1.75
58 59 7.004691 AGGTAAAAACCTACTTCTGCTTGATT 58.995 34.615 0.00 0.00 38.58 2.57
59 60 6.543735 AGGTAAAAACCTACTTCTGCTTGAT 58.456 36.000 0.00 0.00 38.58 2.57
60 61 5.937111 AGGTAAAAACCTACTTCTGCTTGA 58.063 37.500 0.00 0.00 38.58 3.02
61 62 5.181433 GGAGGTAAAAACCTACTTCTGCTTG 59.819 44.000 0.00 0.00 40.86 4.01
62 63 5.163131 TGGAGGTAAAAACCTACTTCTGCTT 60.163 40.000 8.24 0.00 41.39 3.91
63 64 4.349930 TGGAGGTAAAAACCTACTTCTGCT 59.650 41.667 8.24 0.00 41.39 4.24
64 65 4.648651 TGGAGGTAAAAACCTACTTCTGC 58.351 43.478 8.24 0.00 41.39 4.26
65 66 5.581085 CGATGGAGGTAAAAACCTACTTCTG 59.419 44.000 16.43 9.22 40.71 3.02
66 67 5.482878 TCGATGGAGGTAAAAACCTACTTCT 59.517 40.000 16.43 0.67 40.71 2.85
67 68 5.727434 TCGATGGAGGTAAAAACCTACTTC 58.273 41.667 8.24 9.81 41.39 3.01
68 69 5.482878 TCTCGATGGAGGTAAAAACCTACTT 59.517 40.000 8.24 1.81 41.39 2.24
69 70 5.021458 TCTCGATGGAGGTAAAAACCTACT 58.979 41.667 8.24 0.00 41.39 2.57
70 71 5.334724 TCTCGATGGAGGTAAAAACCTAC 57.665 43.478 4.78 0.00 40.86 3.18
71 72 4.404715 CCTCTCGATGGAGGTAAAAACCTA 59.595 45.833 11.66 0.00 45.65 3.08
72 73 3.197983 CCTCTCGATGGAGGTAAAAACCT 59.802 47.826 11.66 0.00 45.65 3.50
73 74 3.532542 CCTCTCGATGGAGGTAAAAACC 58.467 50.000 11.66 0.00 45.65 3.27
82 83 3.610669 CGGGCCCTCTCGATGGAG 61.611 72.222 22.43 0.00 41.89 3.86
83 84 3.672338 TTCGGGCCCTCTCGATGGA 62.672 63.158 22.43 3.53 35.25 3.41
84 85 3.154473 TTCGGGCCCTCTCGATGG 61.154 66.667 22.43 0.54 35.25 3.51
85 86 2.107141 GTTCGGGCCCTCTCGATG 59.893 66.667 22.43 1.43 35.25 3.84
86 87 3.155167 GGTTCGGGCCCTCTCGAT 61.155 66.667 22.43 0.00 35.25 3.59
87 88 4.377760 AGGTTCGGGCCCTCTCGA 62.378 66.667 22.43 9.26 0.00 4.04
88 89 4.148825 CAGGTTCGGGCCCTCTCG 62.149 72.222 22.43 6.49 0.00 4.04
89 90 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
97 98 2.227865 CACAATGTTTACCCAGGTTCGG 59.772 50.000 0.00 0.00 0.00 4.30
98 99 2.882137 ACACAATGTTTACCCAGGTTCG 59.118 45.455 0.00 0.00 0.00 3.95
99 100 3.254903 GGACACAATGTTTACCCAGGTTC 59.745 47.826 0.00 0.00 0.00 3.62
100 101 3.227614 GGACACAATGTTTACCCAGGTT 58.772 45.455 0.00 0.00 0.00 3.50
101 102 2.490168 GGGACACAATGTTTACCCAGGT 60.490 50.000 12.30 0.00 37.50 4.00
102 103 2.167662 GGGACACAATGTTTACCCAGG 58.832 52.381 12.30 0.00 37.50 4.45
103 104 3.154827 AGGGACACAATGTTTACCCAG 57.845 47.619 17.22 0.00 39.73 4.45
104 105 3.226777 CAAGGGACACAATGTTTACCCA 58.773 45.455 17.22 0.00 39.73 4.51
105 106 2.029380 GCAAGGGACACAATGTTTACCC 60.029 50.000 0.00 4.37 37.79 3.69
106 107 2.029380 GGCAAGGGACACAATGTTTACC 60.029 50.000 0.00 0.00 0.00 2.85
107 108 2.890945 AGGCAAGGGACACAATGTTTAC 59.109 45.455 0.00 0.00 0.00 2.01
108 109 3.153919 GAGGCAAGGGACACAATGTTTA 58.846 45.455 0.00 0.00 0.00 2.01
109 110 1.963515 GAGGCAAGGGACACAATGTTT 59.036 47.619 0.00 0.00 0.00 2.83
110 111 1.620822 GAGGCAAGGGACACAATGTT 58.379 50.000 0.00 0.00 0.00 2.71
111 112 0.251341 GGAGGCAAGGGACACAATGT 60.251 55.000 0.00 0.00 0.00 2.71
112 113 0.038744 AGGAGGCAAGGGACACAATG 59.961 55.000 0.00 0.00 0.00 2.82
113 114 0.038744 CAGGAGGCAAGGGACACAAT 59.961 55.000 0.00 0.00 0.00 2.71
114 115 1.352622 ACAGGAGGCAAGGGACACAA 61.353 55.000 0.00 0.00 0.00 3.33
115 116 1.352622 AACAGGAGGCAAGGGACACA 61.353 55.000 0.00 0.00 0.00 3.72
116 117 0.690762 TAACAGGAGGCAAGGGACAC 59.309 55.000 0.00 0.00 0.00 3.67
117 118 0.690762 GTAACAGGAGGCAAGGGACA 59.309 55.000 0.00 0.00 0.00 4.02
118 119 0.035343 GGTAACAGGAGGCAAGGGAC 60.035 60.000 0.00 0.00 0.00 4.46
119 120 0.474854 TGGTAACAGGAGGCAAGGGA 60.475 55.000 0.00 0.00 46.17 4.20
120 121 2.074967 TGGTAACAGGAGGCAAGGG 58.925 57.895 0.00 0.00 46.17 3.95
132 133 4.270325 GTGCGTCTTAGGATCAATGGTAAC 59.730 45.833 0.00 0.00 0.00 2.50
133 134 4.161565 AGTGCGTCTTAGGATCAATGGTAA 59.838 41.667 0.00 0.00 0.00 2.85
134 135 3.704566 AGTGCGTCTTAGGATCAATGGTA 59.295 43.478 0.00 0.00 0.00 3.25
135 136 2.501723 AGTGCGTCTTAGGATCAATGGT 59.498 45.455 0.00 0.00 0.00 3.55
136 137 2.868583 CAGTGCGTCTTAGGATCAATGG 59.131 50.000 0.00 0.00 0.00 3.16
137 138 3.525537 ACAGTGCGTCTTAGGATCAATG 58.474 45.455 0.00 6.15 33.02 2.82
138 139 3.895232 ACAGTGCGTCTTAGGATCAAT 57.105 42.857 0.00 0.00 0.00 2.57
139 140 3.678056 AACAGTGCGTCTTAGGATCAA 57.322 42.857 0.00 0.00 0.00 2.57
140 141 3.325870 CAAACAGTGCGTCTTAGGATCA 58.674 45.455 0.00 0.00 0.00 2.92
141 142 2.673368 CCAAACAGTGCGTCTTAGGATC 59.327 50.000 0.00 0.00 0.00 3.36
142 143 2.615493 CCCAAACAGTGCGTCTTAGGAT 60.615 50.000 0.00 0.00 0.00 3.24
143 144 1.270625 CCCAAACAGTGCGTCTTAGGA 60.271 52.381 0.00 0.00 0.00 2.94
144 145 1.156736 CCCAAACAGTGCGTCTTAGG 58.843 55.000 0.00 0.00 0.00 2.69
145 146 1.798813 GTCCCAAACAGTGCGTCTTAG 59.201 52.381 0.00 0.00 0.00 2.18
146 147 1.541670 GGTCCCAAACAGTGCGTCTTA 60.542 52.381 0.00 0.00 0.00 2.10
147 148 0.818040 GGTCCCAAACAGTGCGTCTT 60.818 55.000 0.00 0.00 0.00 3.01
148 149 1.227853 GGTCCCAAACAGTGCGTCT 60.228 57.895 0.00 0.00 0.00 4.18
149 150 2.258726 GGGTCCCAAACAGTGCGTC 61.259 63.158 1.78 0.00 0.00 5.19
150 151 2.203294 GGGTCCCAAACAGTGCGT 60.203 61.111 1.78 0.00 0.00 5.24
151 152 2.983592 GGGGTCCCAAACAGTGCG 60.984 66.667 10.98 0.00 35.81 5.34
152 153 2.600470 GGGGGTCCCAAACAGTGC 60.600 66.667 10.98 0.00 44.65 4.40
161 162 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
162 163 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
163 164 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
164 165 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
165 166 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
166 167 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
167 168 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
168 169 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
169 170 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
174 175 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
175 176 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
176 177 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
177 178 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
178 179 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
179 180 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
185 186 1.278637 CGCTGTCGGTGTCAAAACC 59.721 57.895 0.00 0.00 36.82 3.27
186 187 4.893241 CGCTGTCGGTGTCAAAAC 57.107 55.556 0.00 0.00 0.00 2.43
208 209 3.318006 TTACCACCCATGCCGGTCG 62.318 63.158 1.90 0.00 32.17 4.79
209 210 1.747745 GTTACCACCCATGCCGGTC 60.748 63.158 1.90 0.00 32.17 4.79
210 211 2.353573 GTTACCACCCATGCCGGT 59.646 61.111 1.90 4.58 36.18 5.28
211 212 2.822255 CGTTACCACCCATGCCGG 60.822 66.667 0.00 0.00 0.00 6.13
212 213 2.046700 ACGTTACCACCCATGCCG 60.047 61.111 0.00 0.00 0.00 5.69
213 214 1.003112 TCACGTTACCACCCATGCC 60.003 57.895 0.00 0.00 0.00 4.40
214 215 1.303091 GGTCACGTTACCACCCATGC 61.303 60.000 14.08 0.00 39.50 4.06
215 216 2.849081 GGTCACGTTACCACCCATG 58.151 57.895 14.08 0.00 39.50 3.66
218 219 2.047939 CGGGTCACGTTACCACCC 60.048 66.667 20.08 14.89 45.82 4.61
219 220 2.047939 CCGGGTCACGTTACCACC 60.048 66.667 20.08 7.62 41.67 4.61
220 221 2.047939 CCCGGGTCACGTTACCAC 60.048 66.667 20.08 8.91 41.67 4.16
221 222 3.312718 CCCCGGGTCACGTTACCA 61.313 66.667 21.85 0.00 41.67 3.25
222 223 1.902765 ATTCCCCGGGTCACGTTACC 61.903 60.000 21.85 10.58 42.24 2.85
223 224 0.741927 CATTCCCCGGGTCACGTTAC 60.742 60.000 21.85 0.00 42.24 2.50
224 225 1.597989 CATTCCCCGGGTCACGTTA 59.402 57.895 21.85 0.00 42.24 3.18
225 226 2.349755 CATTCCCCGGGTCACGTT 59.650 61.111 21.85 0.00 42.24 3.99
226 227 3.712907 CCATTCCCCGGGTCACGT 61.713 66.667 21.85 0.00 42.24 4.49
227 228 3.712907 ACCATTCCCCGGGTCACG 61.713 66.667 21.85 3.45 43.80 4.35
228 229 2.045340 CACCATTCCCCGGGTCAC 60.045 66.667 21.85 0.00 34.45 3.67
229 230 2.204013 TCACCATTCCCCGGGTCA 60.204 61.111 21.85 5.33 34.45 4.02
230 231 2.590092 CTCACCATTCCCCGGGTC 59.410 66.667 21.85 0.00 34.45 4.46
231 232 3.728373 GCTCACCATTCCCCGGGT 61.728 66.667 21.85 0.00 38.10 5.28
232 233 4.856801 CGCTCACCATTCCCCGGG 62.857 72.222 15.80 15.80 0.00 5.73
260 261 0.170339 TCACAGTGCTACCGATGTCG 59.830 55.000 0.00 0.00 39.44 4.35
261 262 1.630148 GTCACAGTGCTACCGATGTC 58.370 55.000 0.00 0.00 0.00 3.06
262 263 0.246635 GGTCACAGTGCTACCGATGT 59.753 55.000 0.00 0.00 0.00 3.06
263 264 0.532573 AGGTCACAGTGCTACCGATG 59.467 55.000 8.44 0.00 38.37 3.84
264 265 1.749634 GTAGGTCACAGTGCTACCGAT 59.250 52.381 8.44 0.00 38.37 4.18
265 266 1.171308 GTAGGTCACAGTGCTACCGA 58.829 55.000 8.44 1.79 38.37 4.69
266 267 0.179171 CGTAGGTCACAGTGCTACCG 60.179 60.000 10.93 5.07 38.37 4.02
267 268 3.715854 CGTAGGTCACAGTGCTACC 57.284 57.895 10.93 7.75 0.00 3.18
347 359 2.338984 GGAGCACGTTCGTCCAGT 59.661 61.111 3.23 0.00 0.00 4.00
372 385 4.445545 CTCGCTTGGAAACGCCGC 62.446 66.667 0.00 0.00 40.66 6.53
381 394 3.782244 GTGCACGCTCTCGCTTGG 61.782 66.667 0.00 0.00 39.84 3.61
478 491 2.293677 GTCAAAGAGTGGAGAGACACGA 59.706 50.000 0.00 0.00 45.80 4.35
490 503 1.621992 TCTCAGAGGCGTCAAAGAGT 58.378 50.000 9.41 0.00 0.00 3.24
494 507 1.048601 ACCTTCTCAGAGGCGTCAAA 58.951 50.000 9.41 0.00 40.65 2.69
505 518 2.703536 TGTTAGCAACCTCACCTTCTCA 59.296 45.455 0.00 0.00 0.00 3.27
513 526 4.262463 CCAACTCTAGTGTTAGCAACCTCA 60.262 45.833 9.72 0.00 0.00 3.86
516 529 3.746492 CACCAACTCTAGTGTTAGCAACC 59.254 47.826 9.72 0.00 0.00 3.77
529 542 0.036952 CATCGTCCAGCACCAACTCT 60.037 55.000 0.00 0.00 0.00 3.24
534 547 4.408821 GCCCATCGTCCAGCACCA 62.409 66.667 0.00 0.00 0.00 4.17
578 591 2.436824 GTCCTCTTCTTGCCCGGC 60.437 66.667 1.04 1.04 0.00 6.13
597 610 1.098712 ACACGGCAAACAACGTCCAT 61.099 50.000 0.00 0.00 42.04 3.41
598 611 1.306642 AACACGGCAAACAACGTCCA 61.307 50.000 0.00 0.00 42.04 4.02
599 612 0.590481 GAACACGGCAAACAACGTCC 60.590 55.000 0.00 0.00 42.04 4.79
600 613 0.922111 CGAACACGGCAAACAACGTC 60.922 55.000 0.00 0.00 42.04 4.34
601 614 1.061253 CGAACACGGCAAACAACGT 59.939 52.632 0.00 0.00 45.25 3.99
603 616 3.595961 GCGAACACGGCAAACAAC 58.404 55.556 0.00 0.00 0.00 3.32
611 670 4.389576 GCTTGCTGGCGAACACGG 62.390 66.667 0.00 0.00 0.00 4.94
614 673 3.663176 GCAGCTTGCTGGCGAACA 61.663 61.111 21.98 0.00 40.96 3.18
677 736 1.983196 CTCGTCGGCGTCTGTCATCT 61.983 60.000 10.18 0.00 39.49 2.90
680 739 4.400109 GCTCGTCGGCGTCTGTCA 62.400 66.667 10.18 0.00 39.49 3.58
691 750 2.277373 CTCGTAGGTGCGCTCGTC 60.277 66.667 9.73 0.52 0.00 4.20
728 787 4.436332 GGATTCCATTTCTCAAATGTGGC 58.564 43.478 7.92 0.00 45.28 5.01
739 798 2.893489 GGCATAGGTGGGATTCCATTTC 59.107 50.000 0.00 0.00 46.09 2.17
741 800 1.147817 GGGCATAGGTGGGATTCCATT 59.852 52.381 0.00 0.00 46.09 3.16
742 801 0.779997 GGGCATAGGTGGGATTCCAT 59.220 55.000 0.00 0.00 46.09 3.41
754 813 6.723298 TTTATGTGGGTTATTTGGGCATAG 57.277 37.500 0.00 0.00 0.00 2.23
769 828 7.651808 CCAAGGCTTCACTATAATTTATGTGG 58.348 38.462 0.00 0.00 0.00 4.17
790 849 6.183360 ACACATTTTGATGGATGATAGCCAAG 60.183 38.462 0.00 0.00 39.21 3.61
806 865 5.179182 GCCCACTTAATTCCAACACATTTTG 59.821 40.000 0.00 0.00 0.00 2.44
818 877 3.117663 TCCCACCATAGCCCACTTAATTC 60.118 47.826 0.00 0.00 0.00 2.17
819 878 2.856231 TCCCACCATAGCCCACTTAATT 59.144 45.455 0.00 0.00 0.00 1.40
825 884 1.077716 GTGTCCCACCATAGCCCAC 60.078 63.158 0.00 0.00 0.00 4.61
845 904 4.016851 AGGTTACAGGTGGGACTGATAGTA 60.017 45.833 0.00 0.00 40.97 1.82
862 921 2.183555 CCCTCGCGGTCAGGTTAC 59.816 66.667 6.13 0.00 0.00 2.50
863 922 3.072468 CCCCTCGCGGTCAGGTTA 61.072 66.667 6.13 0.00 0.00 2.85
875 934 3.286915 CTTGCAAAAGCGCCCCCTC 62.287 63.158 2.29 0.00 0.00 4.30
879 938 3.994853 AGGCTTGCAAAAGCGCCC 61.995 61.111 20.44 6.36 46.38 6.13
880 939 2.735857 CAGGCTTGCAAAAGCGCC 60.736 61.111 17.38 17.38 46.38 6.53
881 940 2.028043 ACAGGCTTGCAAAAGCGC 59.972 55.556 0.00 0.00 46.38 5.92
883 942 1.301165 CCCACAGGCTTGCAAAAGC 60.301 57.895 0.00 0.17 44.76 3.51
884 943 1.368579 CCCCACAGGCTTGCAAAAG 59.631 57.895 0.00 0.00 0.00 2.27
885 944 3.548488 CCCCACAGGCTTGCAAAA 58.452 55.556 0.00 0.00 0.00 2.44
1571 1786 4.153117 CGCTTCTTGTAGATTTTGCAGAGT 59.847 41.667 0.00 0.00 0.00 3.24
1827 2042 1.082104 GCGGTTCTTGCGGTTCTTG 60.082 57.895 0.00 0.00 0.00 3.02
1829 2044 2.668550 GGCGGTTCTTGCGGTTCT 60.669 61.111 0.00 0.00 0.00 3.01
1830 2077 4.084888 CGGCGGTTCTTGCGGTTC 62.085 66.667 0.00 0.00 0.00 3.62
1834 2081 3.484547 GTACCGGCGGTTCTTGCG 61.485 66.667 38.73 5.27 37.09 4.85
2059 2629 1.076559 TTATCGCTCGGGGGAGTCA 60.077 57.895 8.45 0.00 37.81 3.41
2263 3320 3.131478 AACAATAGCCGGTGCCGC 61.131 61.111 1.90 1.20 38.69 6.53
2510 4336 1.899814 TGAAGGATCCACAGCTACGTT 59.100 47.619 15.82 0.00 0.00 3.99
2641 4470 7.253905 ACCAAGCCTAATTTACTCTTCACTA 57.746 36.000 0.00 0.00 0.00 2.74
2710 4539 2.479837 TGAGGCACAGAAACTAACACG 58.520 47.619 0.00 0.00 0.00 4.49
2726 4555 6.251471 AGGGATTAATCCTGCAATAATGAGG 58.749 40.000 29.24 0.00 46.35 3.86
2940 6802 8.194104 AGTAAGCTCTACATTATGTCTGAACTG 58.806 37.037 0.00 0.00 0.00 3.16
2941 6803 8.194104 CAGTAAGCTCTACATTATGTCTGAACT 58.806 37.037 0.00 0.16 0.00 3.01
2942 6804 8.191446 TCAGTAAGCTCTACATTATGTCTGAAC 58.809 37.037 0.00 0.00 0.00 3.18
3191 7065 0.037734 AGGGGTGCGGTAAGAAAAGG 59.962 55.000 0.00 0.00 0.00 3.11
3202 7076 4.698304 TCAGATAAGTTTTAAAGGGGTGCG 59.302 41.667 0.00 0.00 0.00 5.34
3203 7077 6.584185 TTCAGATAAGTTTTAAAGGGGTGC 57.416 37.500 0.00 0.00 0.00 5.01
3254 7128 0.726827 CCATCGCAATGCAAGTACGT 59.273 50.000 5.91 0.00 0.00 3.57
3268 7142 7.770801 TTGAGTTCTTGTAACATATCCATCG 57.229 36.000 0.00 0.00 0.00 3.84
3410 7286 5.595885 TCGGATGATTTCAGATTCAGACTC 58.404 41.667 0.00 0.00 0.00 3.36
3412 7288 6.090628 GCTATCGGATGATTTCAGATTCAGAC 59.909 42.308 0.00 0.00 39.56 3.51
3428 7304 5.762179 TCATATGGAAAAGGCTATCGGAT 57.238 39.130 2.13 0.00 0.00 4.18
3432 7308 8.416329 ACACAAAATCATATGGAAAAGGCTATC 58.584 33.333 2.13 0.00 0.00 2.08
3645 7657 9.001542 ACTCACATTATATACCTCGAAGTAGAC 57.998 37.037 0.00 0.00 0.00 2.59
3733 7839 5.689383 TGCTAATTCAAACCAGAACAGAC 57.311 39.130 0.00 0.00 0.00 3.51
3862 8158 6.015688 AGTCAATGACATGAAGCAAGACAAAT 60.016 34.615 16.38 0.00 34.60 2.32
3865 8161 4.214758 CAGTCAATGACATGAAGCAAGACA 59.785 41.667 16.38 0.00 34.60 3.41
3872 8168 3.079578 AGGTGCAGTCAATGACATGAAG 58.920 45.455 16.38 1.30 34.60 3.02
3915 8211 6.294065 CGGAGGGAGTACAATATAGAACACTC 60.294 46.154 0.00 0.00 33.31 3.51
3930 8226 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3931 8227 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3932 8228 0.674534 CTATTTCCGGACGGAGGGAG 59.325 60.000 13.64 8.24 46.06 4.30
3933 8229 0.032813 ACTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3934 8230 0.828677 AACTATTTCCGGACGGAGGG 59.171 55.000 13.64 7.89 46.06 4.30
3935 8231 1.206371 ACAACTATTTCCGGACGGAGG 59.794 52.381 13.64 8.21 46.06 4.30
3936 8232 2.537401 GACAACTATTTCCGGACGGAG 58.463 52.381 13.64 3.57 46.06 4.63
3937 8233 1.135315 CGACAACTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3938 8234 1.274596 CGACAACTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3939 8235 1.135315 TCCGACAACTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3940 8236 2.165030 TCTCCGACAACTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
3941 8237 2.449464 TCTCCGACAACTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
3942 8238 2.953466 TCTCCGACAACTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
3943 8239 8.758633 ATATATTTCTCCGACAACTATTTCCG 57.241 34.615 0.00 0.00 0.00 4.30
3950 8246 9.273016 CCATTTGTATATATTTCTCCGACAACT 57.727 33.333 0.00 0.00 0.00 3.16
3951 8247 9.268268 TCCATTTGTATATATTTCTCCGACAAC 57.732 33.333 0.00 0.00 0.00 3.32
3953 8249 9.435688 CATCCATTTGTATATATTTCTCCGACA 57.564 33.333 0.00 0.00 0.00 4.35
3954 8250 9.436957 ACATCCATTTGTATATATTTCTCCGAC 57.563 33.333 0.00 0.00 0.00 4.79
3969 8265 9.975218 ATTTTAGTTCTAGGTACATCCATTTGT 57.025 29.630 0.00 0.00 39.02 2.83
3975 8271 9.408069 CGACATATTTTAGTTCTAGGTACATCC 57.592 37.037 0.00 0.00 0.00 3.51
3978 8274 9.399797 TCTCGACATATTTTAGTTCTAGGTACA 57.600 33.333 0.00 0.00 0.00 2.90
4015 8311 3.822167 GTCCGGGAATACTTGTCCAAAAA 59.178 43.478 0.00 0.00 36.83 1.94
4016 8312 3.414269 GTCCGGGAATACTTGTCCAAAA 58.586 45.455 0.00 0.00 36.83 2.44
4017 8313 2.613474 CGTCCGGGAATACTTGTCCAAA 60.613 50.000 0.00 0.00 36.83 3.28
4018 8314 1.066716 CGTCCGGGAATACTTGTCCAA 60.067 52.381 0.00 0.00 36.83 3.53
4019 8315 0.533491 CGTCCGGGAATACTTGTCCA 59.467 55.000 0.00 0.00 36.83 4.02
4020 8316 0.179092 CCGTCCGGGAATACTTGTCC 60.179 60.000 0.00 0.00 38.47 4.02
4021 8317 0.819582 TCCGTCCGGGAATACTTGTC 59.180 55.000 0.00 0.00 43.62 3.18
4022 8318 0.822164 CTCCGTCCGGGAATACTTGT 59.178 55.000 0.00 0.00 46.61 3.16
4023 8319 0.104304 CCTCCGTCCGGGAATACTTG 59.896 60.000 0.00 0.00 46.61 3.16
4024 8320 1.047034 CCCTCCGTCCGGGAATACTT 61.047 60.000 0.00 0.00 46.61 2.24
4025 8321 1.457079 CCCTCCGTCCGGGAATACT 60.457 63.158 0.00 0.00 46.61 2.12
4026 8322 3.135814 CCCTCCGTCCGGGAATAC 58.864 66.667 0.00 0.00 46.61 1.89
4031 8327 0.039326 ATATACTCCCTCCGTCCGGG 59.961 60.000 0.00 0.00 43.38 5.73
4032 8328 1.461559 GATATACTCCCTCCGTCCGG 58.538 60.000 0.00 0.00 0.00 5.14
4033 8329 1.461559 GGATATACTCCCTCCGTCCG 58.538 60.000 0.00 0.00 38.19 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.