Multiple sequence alignment - TraesCS1B01G112500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G112500 chr1B 100.000 2675 0 0 1 2675 130365195 130362521 0.000000e+00 4940.0
1 TraesCS1B01G112500 chr1B 94.519 821 43 2 1777 2596 634502852 634503671 0.000000e+00 1266.0
2 TraesCS1B01G112500 chr1A 93.884 932 47 3 843 1774 98023957 98023036 0.000000e+00 1397.0
3 TraesCS1B01G112500 chr6B 94.896 862 41 3 1768 2627 608191119 608190259 0.000000e+00 1345.0
4 TraesCS1B01G112500 chr6B 98.592 213 3 0 17 229 713793507 713793295 6.990000e-101 377.0
5 TraesCS1B01G112500 chr3B 94.872 858 43 1 1771 2627 691447371 691446514 0.000000e+00 1339.0
6 TraesCS1B01G112500 chr3B 94.929 848 43 0 1776 2623 790394400 790395247 0.000000e+00 1328.0
7 TraesCS1B01G112500 chr3B 94.503 855 45 2 1773 2627 611425662 611424810 0.000000e+00 1317.0
8 TraesCS1B01G112500 chr3B 93.435 853 52 3 1773 2622 753263370 753264221 0.000000e+00 1262.0
9 TraesCS1B01G112500 chr1D 92.727 935 39 13 843 1775 79171530 79170623 0.000000e+00 1323.0
10 TraesCS1B01G112500 chr1D 92.593 54 4 0 2622 2675 79170621 79170568 7.940000e-11 78.7
11 TraesCS1B01G112500 chr7B 93.897 852 51 1 1776 2627 35153241 35152391 0.000000e+00 1284.0
12 TraesCS1B01G112500 chr7B 93.886 229 14 0 617 845 685061627 685061399 1.970000e-91 346.0
13 TraesCS1B01G112500 chr4B 93.302 851 54 2 1775 2622 33173864 33174714 0.000000e+00 1253.0
14 TraesCS1B01G112500 chr5D 93.381 846 50 5 1780 2622 435674256 435673414 0.000000e+00 1247.0
15 TraesCS1B01G112500 chr4A 98.039 561 10 1 285 844 716482394 716481834 0.000000e+00 974.0
16 TraesCS1B01G112500 chr2D 97.778 45 1 0 799 843 591597933 591597889 7.940000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G112500 chr1B 130362521 130365195 2674 True 4940.00 4940 100.000 1 2675 1 chr1B.!!$R1 2674
1 TraesCS1B01G112500 chr1B 634502852 634503671 819 False 1266.00 1266 94.519 1777 2596 1 chr1B.!!$F1 819
2 TraesCS1B01G112500 chr1A 98023036 98023957 921 True 1397.00 1397 93.884 843 1774 1 chr1A.!!$R1 931
3 TraesCS1B01G112500 chr6B 608190259 608191119 860 True 1345.00 1345 94.896 1768 2627 1 chr6B.!!$R1 859
4 TraesCS1B01G112500 chr3B 691446514 691447371 857 True 1339.00 1339 94.872 1771 2627 1 chr3B.!!$R2 856
5 TraesCS1B01G112500 chr3B 790394400 790395247 847 False 1328.00 1328 94.929 1776 2623 1 chr3B.!!$F2 847
6 TraesCS1B01G112500 chr3B 611424810 611425662 852 True 1317.00 1317 94.503 1773 2627 1 chr3B.!!$R1 854
7 TraesCS1B01G112500 chr3B 753263370 753264221 851 False 1262.00 1262 93.435 1773 2622 1 chr3B.!!$F1 849
8 TraesCS1B01G112500 chr1D 79170568 79171530 962 True 700.85 1323 92.660 843 2675 2 chr1D.!!$R1 1832
9 TraesCS1B01G112500 chr7B 35152391 35153241 850 True 1284.00 1284 93.897 1776 2627 1 chr7B.!!$R1 851
10 TraesCS1B01G112500 chr4B 33173864 33174714 850 False 1253.00 1253 93.302 1775 2622 1 chr4B.!!$F1 847
11 TraesCS1B01G112500 chr5D 435673414 435674256 842 True 1247.00 1247 93.381 1780 2622 1 chr5D.!!$R1 842
12 TraesCS1B01G112500 chr4A 716481834 716482394 560 True 974.00 974 98.039 285 844 1 chr4A.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.109597 CAAGGAAGTGTGGCGAATGC 60.11 55.0 0.0 0.0 41.71 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 1969 0.732571 CGCCTGGTTGCATATCGTTT 59.267 50.0 0.0 0.0 0.0 3.6 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.816682 ACCTTTTTATCAGGTGTAAGGAGG 58.183 41.667 0.00 0.00 43.52 4.30
29 30 5.312443 ACCTTTTTATCAGGTGTAAGGAGGT 59.688 40.000 0.00 0.00 43.52 3.85
30 31 5.880887 CCTTTTTATCAGGTGTAAGGAGGTC 59.119 44.000 0.00 0.00 35.30 3.85
31 32 6.442541 TTTTTATCAGGTGTAAGGAGGTCA 57.557 37.500 0.00 0.00 0.00 4.02
32 33 6.442541 TTTTATCAGGTGTAAGGAGGTCAA 57.557 37.500 0.00 0.00 0.00 3.18
33 34 5.677319 TTATCAGGTGTAAGGAGGTCAAG 57.323 43.478 0.00 0.00 0.00 3.02
34 35 2.257207 TCAGGTGTAAGGAGGTCAAGG 58.743 52.381 0.00 0.00 0.00 3.61
35 36 2.158219 TCAGGTGTAAGGAGGTCAAGGA 60.158 50.000 0.00 0.00 0.00 3.36
36 37 2.637872 CAGGTGTAAGGAGGTCAAGGAA 59.362 50.000 0.00 0.00 0.00 3.36
37 38 2.907042 AGGTGTAAGGAGGTCAAGGAAG 59.093 50.000 0.00 0.00 0.00 3.46
38 39 2.638363 GGTGTAAGGAGGTCAAGGAAGT 59.362 50.000 0.00 0.00 0.00 3.01
39 40 3.557264 GGTGTAAGGAGGTCAAGGAAGTG 60.557 52.174 0.00 0.00 0.00 3.16
40 41 3.071167 GTGTAAGGAGGTCAAGGAAGTGT 59.929 47.826 0.00 0.00 0.00 3.55
41 42 2.938956 AAGGAGGTCAAGGAAGTGTG 57.061 50.000 0.00 0.00 0.00 3.82
42 43 1.059913 AGGAGGTCAAGGAAGTGTGG 58.940 55.000 0.00 0.00 0.00 4.17
43 44 0.606673 GGAGGTCAAGGAAGTGTGGC 60.607 60.000 0.00 0.00 0.00 5.01
44 45 0.951040 GAGGTCAAGGAAGTGTGGCG 60.951 60.000 0.00 0.00 0.00 5.69
45 46 1.070786 GGTCAAGGAAGTGTGGCGA 59.929 57.895 0.00 0.00 0.00 5.54
46 47 0.534203 GGTCAAGGAAGTGTGGCGAA 60.534 55.000 0.00 0.00 0.00 4.70
47 48 1.523758 GTCAAGGAAGTGTGGCGAAT 58.476 50.000 0.00 0.00 0.00 3.34
48 49 1.197721 GTCAAGGAAGTGTGGCGAATG 59.802 52.381 0.00 0.00 0.00 2.67
49 50 0.109597 CAAGGAAGTGTGGCGAATGC 60.110 55.000 0.00 0.00 41.71 3.56
50 51 0.250901 AAGGAAGTGTGGCGAATGCT 60.251 50.000 0.00 0.00 42.25 3.79
51 52 0.957395 AGGAAGTGTGGCGAATGCTG 60.957 55.000 0.00 0.00 42.25 4.41
52 53 1.503542 GAAGTGTGGCGAATGCTGG 59.496 57.895 0.00 0.00 42.25 4.85
53 54 1.926511 GAAGTGTGGCGAATGCTGGG 61.927 60.000 0.00 0.00 42.25 4.45
54 55 4.120331 GTGTGGCGAATGCTGGGC 62.120 66.667 0.00 0.00 42.25 5.36
55 56 4.349503 TGTGGCGAATGCTGGGCT 62.350 61.111 0.00 0.00 42.25 5.19
56 57 3.064324 GTGGCGAATGCTGGGCTT 61.064 61.111 0.00 0.00 42.25 4.35
57 58 1.748879 GTGGCGAATGCTGGGCTTA 60.749 57.895 0.00 0.00 42.25 3.09
58 59 1.451927 TGGCGAATGCTGGGCTTAG 60.452 57.895 0.00 0.00 42.25 2.18
59 60 1.153168 GGCGAATGCTGGGCTTAGA 60.153 57.895 0.00 0.00 42.25 2.10
60 61 1.162800 GGCGAATGCTGGGCTTAGAG 61.163 60.000 0.00 0.00 42.25 2.43
61 62 1.162800 GCGAATGCTGGGCTTAGAGG 61.163 60.000 0.00 0.00 38.39 3.69
62 63 0.465705 CGAATGCTGGGCTTAGAGGA 59.534 55.000 0.00 0.00 0.00 3.71
63 64 1.539929 CGAATGCTGGGCTTAGAGGAG 60.540 57.143 0.00 0.00 0.00 3.69
64 65 0.842635 AATGCTGGGCTTAGAGGAGG 59.157 55.000 0.00 0.00 0.00 4.30
65 66 0.327000 ATGCTGGGCTTAGAGGAGGT 60.327 55.000 0.00 0.00 0.00 3.85
66 67 1.267574 TGCTGGGCTTAGAGGAGGTG 61.268 60.000 0.00 0.00 0.00 4.00
67 68 0.978146 GCTGGGCTTAGAGGAGGTGA 60.978 60.000 0.00 0.00 0.00 4.02
68 69 1.118838 CTGGGCTTAGAGGAGGTGAG 58.881 60.000 0.00 0.00 0.00 3.51
69 70 0.710588 TGGGCTTAGAGGAGGTGAGA 59.289 55.000 0.00 0.00 0.00 3.27
70 71 1.078823 TGGGCTTAGAGGAGGTGAGAA 59.921 52.381 0.00 0.00 0.00 2.87
71 72 1.483004 GGGCTTAGAGGAGGTGAGAAC 59.517 57.143 0.00 0.00 0.00 3.01
72 73 2.180276 GGCTTAGAGGAGGTGAGAACA 58.820 52.381 0.00 0.00 0.00 3.18
73 74 2.567615 GGCTTAGAGGAGGTGAGAACAA 59.432 50.000 0.00 0.00 0.00 2.83
74 75 3.008049 GGCTTAGAGGAGGTGAGAACAAA 59.992 47.826 0.00 0.00 0.00 2.83
75 76 4.249661 GCTTAGAGGAGGTGAGAACAAAG 58.750 47.826 0.00 0.00 0.00 2.77
76 77 4.262678 GCTTAGAGGAGGTGAGAACAAAGT 60.263 45.833 0.00 0.00 0.00 2.66
77 78 5.743422 GCTTAGAGGAGGTGAGAACAAAGTT 60.743 44.000 0.00 0.00 0.00 2.66
78 79 4.078639 AGAGGAGGTGAGAACAAAGTTG 57.921 45.455 0.00 0.00 0.00 3.16
79 80 3.142174 GAGGAGGTGAGAACAAAGTTGG 58.858 50.000 0.00 0.00 0.00 3.77
80 81 2.777692 AGGAGGTGAGAACAAAGTTGGA 59.222 45.455 0.00 0.00 0.00 3.53
81 82 3.142174 GGAGGTGAGAACAAAGTTGGAG 58.858 50.000 0.00 0.00 0.00 3.86
82 83 3.181454 GGAGGTGAGAACAAAGTTGGAGA 60.181 47.826 0.00 0.00 0.00 3.71
83 84 4.451900 GAGGTGAGAACAAAGTTGGAGAA 58.548 43.478 0.00 0.00 0.00 2.87
84 85 4.455606 AGGTGAGAACAAAGTTGGAGAAG 58.544 43.478 0.00 0.00 0.00 2.85
85 86 4.080299 AGGTGAGAACAAAGTTGGAGAAGT 60.080 41.667 0.00 0.00 0.00 3.01
86 87 4.035675 GGTGAGAACAAAGTTGGAGAAGTG 59.964 45.833 0.00 0.00 0.00 3.16
87 88 4.636206 GTGAGAACAAAGTTGGAGAAGTGT 59.364 41.667 0.00 0.00 0.00 3.55
88 89 5.123979 GTGAGAACAAAGTTGGAGAAGTGTT 59.876 40.000 0.00 0.00 32.15 3.32
89 90 5.354234 TGAGAACAAAGTTGGAGAAGTGTTC 59.646 40.000 6.29 6.29 43.20 3.18
90 91 5.253330 AGAACAAAGTTGGAGAAGTGTTCA 58.747 37.500 14.64 0.00 44.56 3.18
91 92 5.888161 AGAACAAAGTTGGAGAAGTGTTCAT 59.112 36.000 14.64 0.66 44.56 2.57
92 93 5.757850 ACAAAGTTGGAGAAGTGTTCATC 57.242 39.130 0.00 0.00 0.00 2.92
93 94 5.440610 ACAAAGTTGGAGAAGTGTTCATCT 58.559 37.500 0.00 0.00 0.00 2.90
94 95 5.297776 ACAAAGTTGGAGAAGTGTTCATCTG 59.702 40.000 0.00 0.00 0.00 2.90
95 96 4.696479 AGTTGGAGAAGTGTTCATCTGT 57.304 40.909 0.00 0.00 0.00 3.41
96 97 4.384056 AGTTGGAGAAGTGTTCATCTGTG 58.616 43.478 0.00 0.00 0.00 3.66
97 98 4.130118 GTTGGAGAAGTGTTCATCTGTGT 58.870 43.478 0.00 0.00 0.00 3.72
98 99 5.070446 AGTTGGAGAAGTGTTCATCTGTGTA 59.930 40.000 0.00 0.00 0.00 2.90
99 100 5.745312 TGGAGAAGTGTTCATCTGTGTAT 57.255 39.130 0.00 0.00 0.00 2.29
100 101 5.482006 TGGAGAAGTGTTCATCTGTGTATG 58.518 41.667 0.00 0.00 0.00 2.39
101 102 4.331168 GGAGAAGTGTTCATCTGTGTATGC 59.669 45.833 0.00 0.00 0.00 3.14
102 103 4.898320 AGAAGTGTTCATCTGTGTATGCA 58.102 39.130 0.00 0.00 0.00 3.96
103 104 4.934001 AGAAGTGTTCATCTGTGTATGCAG 59.066 41.667 0.00 0.00 37.81 4.41
104 105 3.005554 AGTGTTCATCTGTGTATGCAGC 58.994 45.455 0.00 0.00 36.49 5.25
105 106 3.005554 GTGTTCATCTGTGTATGCAGCT 58.994 45.455 0.00 0.00 36.49 4.24
106 107 3.438087 GTGTTCATCTGTGTATGCAGCTT 59.562 43.478 0.00 0.00 36.49 3.74
107 108 4.074259 TGTTCATCTGTGTATGCAGCTTT 58.926 39.130 0.00 0.00 36.49 3.51
108 109 4.083164 TGTTCATCTGTGTATGCAGCTTTG 60.083 41.667 0.00 0.00 36.49 2.77
109 110 3.011818 TCATCTGTGTATGCAGCTTTGG 58.988 45.455 0.00 0.00 36.49 3.28
110 111 2.857186 TCTGTGTATGCAGCTTTGGA 57.143 45.000 0.00 0.00 36.49 3.53
111 112 3.354948 TCTGTGTATGCAGCTTTGGAT 57.645 42.857 0.00 0.00 36.49 3.41
112 113 3.011818 TCTGTGTATGCAGCTTTGGATG 58.988 45.455 0.00 0.00 36.49 3.51
120 121 1.325355 CAGCTTTGGATGCCCTATGG 58.675 55.000 0.00 0.00 0.00 2.74
121 122 1.133699 CAGCTTTGGATGCCCTATGGA 60.134 52.381 0.00 0.00 0.00 3.41
122 123 1.133668 AGCTTTGGATGCCCTATGGAC 60.134 52.381 0.00 0.00 0.00 4.02
123 124 1.597742 CTTTGGATGCCCTATGGACG 58.402 55.000 0.00 0.00 0.00 4.79
124 125 1.140852 CTTTGGATGCCCTATGGACGA 59.859 52.381 0.00 0.00 0.00 4.20
125 126 1.434188 TTGGATGCCCTATGGACGAT 58.566 50.000 0.00 0.00 0.00 3.73
126 127 2.319025 TGGATGCCCTATGGACGATA 57.681 50.000 0.00 0.00 0.00 2.92
127 128 1.899814 TGGATGCCCTATGGACGATAC 59.100 52.381 0.00 0.00 0.00 2.24
128 129 1.899814 GGATGCCCTATGGACGATACA 59.100 52.381 0.00 0.00 0.00 2.29
129 130 2.353803 GGATGCCCTATGGACGATACAC 60.354 54.545 0.00 0.00 0.00 2.90
143 144 4.227177 CGATACACGTAGACAAAGTTGC 57.773 45.455 0.00 0.00 37.22 4.17
144 145 3.060363 CGATACACGTAGACAAAGTTGCC 59.940 47.826 0.00 0.00 37.22 4.52
145 146 2.319136 ACACGTAGACAAAGTTGCCA 57.681 45.000 0.00 0.00 0.00 4.92
146 147 2.846193 ACACGTAGACAAAGTTGCCAT 58.154 42.857 0.00 0.00 0.00 4.40
147 148 2.548057 ACACGTAGACAAAGTTGCCATG 59.452 45.455 0.00 0.00 0.00 3.66
148 149 2.095768 CACGTAGACAAAGTTGCCATGG 60.096 50.000 7.63 7.63 0.00 3.66
149 150 2.151202 CGTAGACAAAGTTGCCATGGT 58.849 47.619 14.67 0.00 0.00 3.55
150 151 3.244284 ACGTAGACAAAGTTGCCATGGTA 60.244 43.478 14.67 5.86 0.00 3.25
151 152 3.938963 CGTAGACAAAGTTGCCATGGTAT 59.061 43.478 14.67 0.00 0.00 2.73
152 153 4.394920 CGTAGACAAAGTTGCCATGGTATT 59.605 41.667 14.67 0.00 0.00 1.89
153 154 5.447279 CGTAGACAAAGTTGCCATGGTATTC 60.447 44.000 14.67 5.55 0.00 1.75
154 155 4.406456 AGACAAAGTTGCCATGGTATTCA 58.594 39.130 14.67 0.00 0.00 2.57
155 156 4.832266 AGACAAAGTTGCCATGGTATTCAA 59.168 37.500 14.67 5.99 0.00 2.69
156 157 5.481473 AGACAAAGTTGCCATGGTATTCAAT 59.519 36.000 14.67 0.00 0.00 2.57
157 158 6.014327 AGACAAAGTTGCCATGGTATTCAATT 60.014 34.615 14.67 2.81 0.00 2.32
158 159 6.532826 ACAAAGTTGCCATGGTATTCAATTT 58.467 32.000 14.67 8.95 0.00 1.82
159 160 6.650390 ACAAAGTTGCCATGGTATTCAATTTC 59.350 34.615 14.67 0.00 0.00 2.17
160 161 6.610075 AAGTTGCCATGGTATTCAATTTCT 57.390 33.333 14.67 0.09 0.00 2.52
161 162 5.969423 AGTTGCCATGGTATTCAATTTCTG 58.031 37.500 14.67 0.00 0.00 3.02
162 163 5.105228 AGTTGCCATGGTATTCAATTTCTGG 60.105 40.000 14.67 0.00 0.00 3.86
163 164 4.352009 TGCCATGGTATTCAATTTCTGGT 58.648 39.130 14.67 0.00 0.00 4.00
164 165 4.160065 TGCCATGGTATTCAATTTCTGGTG 59.840 41.667 14.67 0.00 0.00 4.17
165 166 4.441913 GCCATGGTATTCAATTTCTGGTGG 60.442 45.833 14.67 0.00 0.00 4.61
166 167 4.441913 CCATGGTATTCAATTTCTGGTGGC 60.442 45.833 2.57 0.00 0.00 5.01
167 168 3.772387 TGGTATTCAATTTCTGGTGGCA 58.228 40.909 0.00 0.00 0.00 4.92
168 169 3.509575 TGGTATTCAATTTCTGGTGGCAC 59.490 43.478 9.70 9.70 0.00 5.01
169 170 3.763897 GGTATTCAATTTCTGGTGGCACT 59.236 43.478 18.45 0.00 0.00 4.40
170 171 3.947910 ATTCAATTTCTGGTGGCACTG 57.052 42.857 18.45 10.93 0.00 3.66
171 172 1.619654 TCAATTTCTGGTGGCACTGG 58.380 50.000 18.45 10.53 0.00 4.00
172 173 1.133513 TCAATTTCTGGTGGCACTGGT 60.134 47.619 18.45 0.00 0.00 4.00
173 174 1.000060 CAATTTCTGGTGGCACTGGTG 60.000 52.381 18.45 5.57 0.00 4.17
174 175 0.540365 ATTTCTGGTGGCACTGGTGG 60.540 55.000 18.45 3.83 0.00 4.61
175 176 1.640593 TTTCTGGTGGCACTGGTGGA 61.641 55.000 18.45 6.08 0.00 4.02
176 177 1.640593 TTCTGGTGGCACTGGTGGAA 61.641 55.000 18.45 11.35 0.00 3.53
177 178 1.075482 CTGGTGGCACTGGTGGAAT 59.925 57.895 18.45 0.00 0.00 3.01
178 179 0.327924 CTGGTGGCACTGGTGGAATA 59.672 55.000 18.45 0.00 0.00 1.75
179 180 0.774276 TGGTGGCACTGGTGGAATAA 59.226 50.000 18.45 0.00 0.00 1.40
180 181 1.357420 TGGTGGCACTGGTGGAATAAT 59.643 47.619 18.45 0.00 0.00 1.28
181 182 2.024414 GGTGGCACTGGTGGAATAATC 58.976 52.381 18.45 0.00 0.00 1.75
182 183 1.670811 GTGGCACTGGTGGAATAATCG 59.329 52.381 11.13 0.00 0.00 3.34
183 184 1.308998 GGCACTGGTGGAATAATCGG 58.691 55.000 2.84 0.00 0.00 4.18
184 185 1.134220 GGCACTGGTGGAATAATCGGA 60.134 52.381 2.84 0.00 0.00 4.55
185 186 2.639065 GCACTGGTGGAATAATCGGAA 58.361 47.619 2.84 0.00 0.00 4.30
186 187 2.354821 GCACTGGTGGAATAATCGGAAC 59.645 50.000 2.84 0.00 0.00 3.62
187 188 3.605634 CACTGGTGGAATAATCGGAACA 58.394 45.455 0.00 0.00 0.00 3.18
188 189 3.623060 CACTGGTGGAATAATCGGAACAG 59.377 47.826 0.00 0.00 32.38 3.16
189 190 3.517901 ACTGGTGGAATAATCGGAACAGA 59.482 43.478 0.00 0.00 31.23 3.41
190 191 4.122776 CTGGTGGAATAATCGGAACAGAG 58.877 47.826 0.00 0.00 29.15 3.35
191 192 3.517901 TGGTGGAATAATCGGAACAGAGT 59.482 43.478 0.00 0.00 0.00 3.24
192 193 4.019681 TGGTGGAATAATCGGAACAGAGTT 60.020 41.667 0.00 0.00 0.00 3.01
193 194 4.941873 GGTGGAATAATCGGAACAGAGTTT 59.058 41.667 0.00 0.00 0.00 2.66
194 195 5.163754 GGTGGAATAATCGGAACAGAGTTTG 60.164 44.000 0.00 0.00 0.00 2.93
195 196 4.941263 TGGAATAATCGGAACAGAGTTTGG 59.059 41.667 0.00 0.00 0.00 3.28
196 197 5.183228 GGAATAATCGGAACAGAGTTTGGA 58.817 41.667 0.00 0.00 0.00 3.53
197 198 5.646360 GGAATAATCGGAACAGAGTTTGGAA 59.354 40.000 0.00 0.00 0.00 3.53
198 199 6.150474 GGAATAATCGGAACAGAGTTTGGAAA 59.850 38.462 0.00 0.00 0.00 3.13
199 200 6.743575 ATAATCGGAACAGAGTTTGGAAAG 57.256 37.500 0.00 0.00 0.00 2.62
200 201 2.846193 TCGGAACAGAGTTTGGAAAGG 58.154 47.619 0.00 0.00 0.00 3.11
201 202 2.171870 TCGGAACAGAGTTTGGAAAGGT 59.828 45.455 0.00 0.00 0.00 3.50
202 203 3.388676 TCGGAACAGAGTTTGGAAAGGTA 59.611 43.478 0.00 0.00 0.00 3.08
203 204 4.131596 CGGAACAGAGTTTGGAAAGGTAA 58.868 43.478 0.00 0.00 0.00 2.85
204 205 4.577283 CGGAACAGAGTTTGGAAAGGTAAA 59.423 41.667 0.00 0.00 0.00 2.01
205 206 5.066764 CGGAACAGAGTTTGGAAAGGTAAAA 59.933 40.000 0.00 0.00 0.00 1.52
206 207 6.270815 GGAACAGAGTTTGGAAAGGTAAAAC 58.729 40.000 0.00 0.00 34.68 2.43
207 208 6.096423 GGAACAGAGTTTGGAAAGGTAAAACT 59.904 38.462 0.00 0.00 44.61 2.66
208 209 7.283807 GGAACAGAGTTTGGAAAGGTAAAACTA 59.716 37.037 0.36 0.00 42.60 2.24
209 210 7.803279 ACAGAGTTTGGAAAGGTAAAACTAG 57.197 36.000 0.36 0.00 42.60 2.57
210 211 7.571025 ACAGAGTTTGGAAAGGTAAAACTAGA 58.429 34.615 0.00 0.00 42.60 2.43
211 212 8.218488 ACAGAGTTTGGAAAGGTAAAACTAGAT 58.782 33.333 0.00 0.00 42.60 1.98
212 213 8.507249 CAGAGTTTGGAAAGGTAAAACTAGATG 58.493 37.037 0.00 0.00 42.60 2.90
213 214 7.665974 AGAGTTTGGAAAGGTAAAACTAGATGG 59.334 37.037 0.00 0.00 42.60 3.51
214 215 6.208797 AGTTTGGAAAGGTAAAACTAGATGGC 59.791 38.462 0.00 0.00 41.19 4.40
215 216 5.249780 TGGAAAGGTAAAACTAGATGGCA 57.750 39.130 0.00 0.00 0.00 4.92
216 217 5.253330 TGGAAAGGTAAAACTAGATGGCAG 58.747 41.667 0.00 0.00 0.00 4.85
217 218 4.096532 GGAAAGGTAAAACTAGATGGCAGC 59.903 45.833 0.00 0.00 0.00 5.25
218 219 3.283259 AGGTAAAACTAGATGGCAGCC 57.717 47.619 3.66 3.66 0.00 4.85
219 220 2.576191 AGGTAAAACTAGATGGCAGCCA 59.424 45.455 18.99 18.99 38.19 4.75
220 221 3.010138 AGGTAAAACTAGATGGCAGCCAA 59.990 43.478 20.84 0.00 36.95 4.52
221 222 3.761752 GGTAAAACTAGATGGCAGCCAAA 59.238 43.478 20.84 6.25 36.95 3.28
222 223 4.402474 GGTAAAACTAGATGGCAGCCAAAT 59.598 41.667 20.84 12.77 36.95 2.32
223 224 4.460948 AAAACTAGATGGCAGCCAAATG 57.539 40.909 20.84 11.61 36.95 2.32
224 225 3.370840 AACTAGATGGCAGCCAAATGA 57.629 42.857 20.84 3.22 36.95 2.57
225 226 3.370840 ACTAGATGGCAGCCAAATGAA 57.629 42.857 20.84 1.53 36.95 2.57
226 227 3.700538 ACTAGATGGCAGCCAAATGAAA 58.299 40.909 20.84 0.00 36.95 2.69
227 228 4.284178 ACTAGATGGCAGCCAAATGAAAT 58.716 39.130 20.84 0.00 36.95 2.17
228 229 4.713321 ACTAGATGGCAGCCAAATGAAATT 59.287 37.500 20.84 0.00 36.95 1.82
229 230 5.893255 ACTAGATGGCAGCCAAATGAAATTA 59.107 36.000 20.84 1.75 36.95 1.40
230 231 5.881923 AGATGGCAGCCAAATGAAATTAT 57.118 34.783 20.84 0.00 36.95 1.28
231 232 5.607477 AGATGGCAGCCAAATGAAATTATG 58.393 37.500 20.84 0.00 36.95 1.90
232 233 4.822685 TGGCAGCCAAATGAAATTATGT 57.177 36.364 13.33 0.00 33.67 2.29
233 234 5.163281 TGGCAGCCAAATGAAATTATGTT 57.837 34.783 13.33 0.00 33.67 2.71
234 235 5.558818 TGGCAGCCAAATGAAATTATGTTT 58.441 33.333 13.33 0.00 33.67 2.83
235 236 5.642919 TGGCAGCCAAATGAAATTATGTTTC 59.357 36.000 13.33 0.00 33.67 2.78
236 237 5.642919 GGCAGCCAAATGAAATTATGTTTCA 59.357 36.000 6.55 9.60 41.91 2.69
237 238 6.183360 GGCAGCCAAATGAAATTATGTTTCAG 60.183 38.462 6.55 2.83 41.13 3.02
238 239 6.591062 GCAGCCAAATGAAATTATGTTTCAGA 59.409 34.615 11.94 0.00 41.13 3.27
239 240 7.412237 GCAGCCAAATGAAATTATGTTTCAGAC 60.412 37.037 11.94 3.01 41.13 3.51
240 241 7.816031 CAGCCAAATGAAATTATGTTTCAGACT 59.184 33.333 11.94 4.58 41.13 3.24
241 242 8.370182 AGCCAAATGAAATTATGTTTCAGACTT 58.630 29.630 11.94 5.11 41.13 3.01
242 243 8.992073 GCCAAATGAAATTATGTTTCAGACTTT 58.008 29.630 11.94 6.83 41.13 2.66
246 247 7.945033 TGAAATTATGTTTCAGACTTTTGCC 57.055 32.000 4.54 0.00 33.90 4.52
247 248 7.495901 TGAAATTATGTTTCAGACTTTTGCCA 58.504 30.769 4.54 0.00 33.90 4.92
248 249 7.437862 TGAAATTATGTTTCAGACTTTTGCCAC 59.562 33.333 4.54 0.00 33.90 5.01
249 250 3.733443 ATGTTTCAGACTTTTGCCACC 57.267 42.857 0.00 0.00 0.00 4.61
250 251 2.451490 TGTTTCAGACTTTTGCCACCA 58.549 42.857 0.00 0.00 0.00 4.17
251 252 2.828520 TGTTTCAGACTTTTGCCACCAA 59.171 40.909 0.00 0.00 0.00 3.67
252 253 3.450457 TGTTTCAGACTTTTGCCACCAAT 59.550 39.130 0.00 0.00 0.00 3.16
253 254 3.731652 TTCAGACTTTTGCCACCAATG 57.268 42.857 0.00 0.00 0.00 2.82
254 255 1.340889 TCAGACTTTTGCCACCAATGC 59.659 47.619 0.00 0.00 0.00 3.56
255 256 1.342174 CAGACTTTTGCCACCAATGCT 59.658 47.619 0.00 0.00 0.00 3.79
256 257 1.342174 AGACTTTTGCCACCAATGCTG 59.658 47.619 0.00 0.00 0.00 4.41
257 258 1.340889 GACTTTTGCCACCAATGCTGA 59.659 47.619 0.00 0.00 0.00 4.26
258 259 1.761784 ACTTTTGCCACCAATGCTGAA 59.238 42.857 0.00 0.00 0.00 3.02
259 260 2.369532 ACTTTTGCCACCAATGCTGAAT 59.630 40.909 0.00 0.00 0.00 2.57
260 261 3.577848 ACTTTTGCCACCAATGCTGAATA 59.422 39.130 0.00 0.00 0.00 1.75
261 262 3.591196 TTTGCCACCAATGCTGAATAC 57.409 42.857 0.00 0.00 0.00 1.89
262 263 1.473258 TGCCACCAATGCTGAATACC 58.527 50.000 0.00 0.00 0.00 2.73
263 264 1.005805 TGCCACCAATGCTGAATACCT 59.994 47.619 0.00 0.00 0.00 3.08
264 265 1.406539 GCCACCAATGCTGAATACCTG 59.593 52.381 0.00 0.00 0.00 4.00
265 266 2.726821 CCACCAATGCTGAATACCTGT 58.273 47.619 0.00 0.00 0.00 4.00
266 267 2.684881 CCACCAATGCTGAATACCTGTC 59.315 50.000 0.00 0.00 0.00 3.51
267 268 2.352651 CACCAATGCTGAATACCTGTCG 59.647 50.000 0.00 0.00 0.00 4.35
268 269 1.942657 CCAATGCTGAATACCTGTCGG 59.057 52.381 0.00 0.00 0.00 4.79
270 271 2.604046 ATGCTGAATACCTGTCGGTC 57.396 50.000 0.00 0.00 44.21 4.79
271 272 0.172578 TGCTGAATACCTGTCGGTCG 59.827 55.000 0.00 0.00 44.21 4.79
272 273 1.146358 GCTGAATACCTGTCGGTCGC 61.146 60.000 0.00 0.00 44.21 5.19
273 274 0.866061 CTGAATACCTGTCGGTCGCG 60.866 60.000 0.00 0.00 44.21 5.87
274 275 1.588139 GAATACCTGTCGGTCGCGG 60.588 63.158 6.13 0.00 44.21 6.46
275 276 2.275547 GAATACCTGTCGGTCGCGGT 62.276 60.000 6.13 0.00 44.21 5.68
276 277 2.552585 AATACCTGTCGGTCGCGGTG 62.553 60.000 6.13 0.00 44.21 4.94
278 279 4.351938 CCTGTCGGTCGCGGTGAA 62.352 66.667 6.13 0.00 0.00 3.18
279 280 2.805353 CTGTCGGTCGCGGTGAAG 60.805 66.667 6.13 0.00 0.00 3.02
280 281 3.263503 CTGTCGGTCGCGGTGAAGA 62.264 63.158 6.13 0.00 0.00 2.87
281 282 2.804090 GTCGGTCGCGGTGAAGAC 60.804 66.667 6.13 11.03 36.70 3.01
282 283 2.981909 TCGGTCGCGGTGAAGACT 60.982 61.111 6.13 0.00 37.52 3.24
283 284 2.805353 CGGTCGCGGTGAAGACTG 60.805 66.667 6.13 0.00 37.52 3.51
335 336 1.019650 AGACCACCAGAGGAGGGTAT 58.980 55.000 4.56 0.00 37.77 2.73
337 338 2.091222 AGACCACCAGAGGAGGGTATAC 60.091 54.545 4.56 0.00 37.77 1.47
391 392 2.040544 GGTGAAGATGGTGCGTGGG 61.041 63.158 0.00 0.00 0.00 4.61
529 530 5.958083 TGGCAACTGAACTAGGAGCTATCC 61.958 50.000 0.00 0.00 41.76 2.59
549 550 6.604735 ATCCGCATAATTGTAGAAACTGAC 57.395 37.500 0.00 0.00 0.00 3.51
610 611 3.244215 GGATTTCTCCAGATATGCCACGA 60.244 47.826 0.00 0.00 41.64 4.35
827 828 4.755123 ACTGTCTGCGTAATAAAGCTTTGT 59.245 37.500 22.02 12.64 0.00 2.83
836 837 9.464714 TGCGTAATAAAGCTTTGTTTTAATCAA 57.535 25.926 23.73 4.03 0.00 2.57
867 868 3.325135 GGTGGTCTCTTCTTTCAAGGAGA 59.675 47.826 0.00 0.00 38.33 3.71
872 873 5.471797 GGTCTCTTCTTTCAAGGAGAAAAGG 59.528 44.000 0.00 0.00 45.11 3.11
873 874 5.049060 GTCTCTTCTTTCAAGGAGAAAAGGC 60.049 44.000 0.00 0.00 45.11 4.35
874 875 3.815401 TCTTCTTTCAAGGAGAAAAGGCG 59.185 43.478 0.00 0.00 45.11 5.52
959 960 2.264455 AGTGAGCCACTGATCTTTCCT 58.736 47.619 7.00 0.00 43.63 3.36
1230 1231 3.775654 CTCCGCCTCCTCGCCTTT 61.776 66.667 0.00 0.00 0.00 3.11
1326 1327 1.373748 GCGGTACACGGAGCTCAAA 60.374 57.895 17.19 0.00 44.51 2.69
1675 1676 1.365633 GTGCCTGGCGAGATCTAGG 59.634 63.158 14.98 4.99 0.00 3.02
1738 1741 1.666888 CGATGTTGGCTTTGGCAGTTC 60.667 52.381 0.00 0.00 39.75 3.01
1866 1871 2.490115 TGAAACGCAAACACAAAGGACT 59.510 40.909 0.00 0.00 0.00 3.85
1880 1885 7.970102 ACACAAAGGACTATAAACACCTAGAA 58.030 34.615 0.00 0.00 32.06 2.10
1964 1969 2.436109 GGAAGACCCCTGCAGCAA 59.564 61.111 8.66 0.00 0.00 3.91
1971 1976 0.037590 ACCCCTGCAGCAAAACGATA 59.962 50.000 8.66 0.00 0.00 2.92
2026 2031 0.467290 ACGGAACAATTGCCACCACT 60.467 50.000 5.05 0.00 0.00 4.00
2219 2224 1.064832 GGCAAAGCAGAATCTCCCTCT 60.065 52.381 0.00 0.00 0.00 3.69
2463 2468 3.086282 GCCCGGAGAAACTTATTCCAAA 58.914 45.455 0.73 0.00 0.00 3.28
2559 2566 2.125225 GTTCCCCCTCCCTCCTGT 59.875 66.667 0.00 0.00 0.00 4.00
2632 2639 2.030862 GGAAACCCACGTACGGCA 59.969 61.111 21.06 0.00 0.00 5.69
2636 2643 2.999739 AAACCCACGTACGGCACCAG 63.000 60.000 21.06 4.44 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.231716 ACCTGATAAAAAGGTGCCCC 57.768 50.000 0.00 0.00 46.51 5.80
6 7 5.816682 ACCTCCTTACACCTGATAAAAAGG 58.183 41.667 0.00 0.00 40.93 3.11
7 8 6.472887 TGACCTCCTTACACCTGATAAAAAG 58.527 40.000 0.00 0.00 0.00 2.27
8 9 6.442541 TGACCTCCTTACACCTGATAAAAA 57.557 37.500 0.00 0.00 0.00 1.94
9 10 6.442541 TTGACCTCCTTACACCTGATAAAA 57.557 37.500 0.00 0.00 0.00 1.52
10 11 5.045869 CCTTGACCTCCTTACACCTGATAAA 60.046 44.000 0.00 0.00 0.00 1.40
11 12 4.469945 CCTTGACCTCCTTACACCTGATAA 59.530 45.833 0.00 0.00 0.00 1.75
12 13 4.030913 CCTTGACCTCCTTACACCTGATA 58.969 47.826 0.00 0.00 0.00 2.15
13 14 2.840651 CCTTGACCTCCTTACACCTGAT 59.159 50.000 0.00 0.00 0.00 2.90
14 15 2.158219 TCCTTGACCTCCTTACACCTGA 60.158 50.000 0.00 0.00 0.00 3.86
15 16 2.257207 TCCTTGACCTCCTTACACCTG 58.743 52.381 0.00 0.00 0.00 4.00
16 17 2.715763 TCCTTGACCTCCTTACACCT 57.284 50.000 0.00 0.00 0.00 4.00
17 18 2.638363 ACTTCCTTGACCTCCTTACACC 59.362 50.000 0.00 0.00 0.00 4.16
18 19 3.071167 ACACTTCCTTGACCTCCTTACAC 59.929 47.826 0.00 0.00 0.00 2.90
19 20 3.071023 CACACTTCCTTGACCTCCTTACA 59.929 47.826 0.00 0.00 0.00 2.41
20 21 3.557264 CCACACTTCCTTGACCTCCTTAC 60.557 52.174 0.00 0.00 0.00 2.34
21 22 2.637872 CCACACTTCCTTGACCTCCTTA 59.362 50.000 0.00 0.00 0.00 2.69
22 23 1.421646 CCACACTTCCTTGACCTCCTT 59.578 52.381 0.00 0.00 0.00 3.36
23 24 1.059913 CCACACTTCCTTGACCTCCT 58.940 55.000 0.00 0.00 0.00 3.69
24 25 0.606673 GCCACACTTCCTTGACCTCC 60.607 60.000 0.00 0.00 0.00 4.30
25 26 0.951040 CGCCACACTTCCTTGACCTC 60.951 60.000 0.00 0.00 0.00 3.85
26 27 1.071471 CGCCACACTTCCTTGACCT 59.929 57.895 0.00 0.00 0.00 3.85
27 28 0.534203 TTCGCCACACTTCCTTGACC 60.534 55.000 0.00 0.00 0.00 4.02
28 29 1.197721 CATTCGCCACACTTCCTTGAC 59.802 52.381 0.00 0.00 0.00 3.18
29 30 1.522668 CATTCGCCACACTTCCTTGA 58.477 50.000 0.00 0.00 0.00 3.02
30 31 0.109597 GCATTCGCCACACTTCCTTG 60.110 55.000 0.00 0.00 0.00 3.61
31 32 0.250901 AGCATTCGCCACACTTCCTT 60.251 50.000 0.00 0.00 39.83 3.36
32 33 0.957395 CAGCATTCGCCACACTTCCT 60.957 55.000 0.00 0.00 39.83 3.36
33 34 1.503542 CAGCATTCGCCACACTTCC 59.496 57.895 0.00 0.00 39.83 3.46
34 35 1.503542 CCAGCATTCGCCACACTTC 59.496 57.895 0.00 0.00 39.83 3.01
35 36 1.973281 CCCAGCATTCGCCACACTT 60.973 57.895 0.00 0.00 39.83 3.16
36 37 2.360350 CCCAGCATTCGCCACACT 60.360 61.111 0.00 0.00 39.83 3.55
37 38 4.120331 GCCCAGCATTCGCCACAC 62.120 66.667 0.00 0.00 39.83 3.82
38 39 2.476852 TAAGCCCAGCATTCGCCACA 62.477 55.000 0.00 0.00 39.83 4.17
39 40 1.718757 CTAAGCCCAGCATTCGCCAC 61.719 60.000 0.00 0.00 39.83 5.01
40 41 1.451927 CTAAGCCCAGCATTCGCCA 60.452 57.895 0.00 0.00 39.83 5.69
41 42 1.153168 TCTAAGCCCAGCATTCGCC 60.153 57.895 0.00 0.00 39.83 5.54
42 43 1.162800 CCTCTAAGCCCAGCATTCGC 61.163 60.000 0.00 0.00 38.99 4.70
43 44 0.465705 TCCTCTAAGCCCAGCATTCG 59.534 55.000 0.00 0.00 0.00 3.34
44 45 1.202746 CCTCCTCTAAGCCCAGCATTC 60.203 57.143 0.00 0.00 0.00 2.67
45 46 0.842635 CCTCCTCTAAGCCCAGCATT 59.157 55.000 0.00 0.00 0.00 3.56
46 47 0.327000 ACCTCCTCTAAGCCCAGCAT 60.327 55.000 0.00 0.00 0.00 3.79
47 48 1.081092 ACCTCCTCTAAGCCCAGCA 59.919 57.895 0.00 0.00 0.00 4.41
48 49 0.978146 TCACCTCCTCTAAGCCCAGC 60.978 60.000 0.00 0.00 0.00 4.85
49 50 1.118838 CTCACCTCCTCTAAGCCCAG 58.881 60.000 0.00 0.00 0.00 4.45
50 51 0.710588 TCTCACCTCCTCTAAGCCCA 59.289 55.000 0.00 0.00 0.00 5.36
51 52 1.483004 GTTCTCACCTCCTCTAAGCCC 59.517 57.143 0.00 0.00 0.00 5.19
52 53 2.180276 TGTTCTCACCTCCTCTAAGCC 58.820 52.381 0.00 0.00 0.00 4.35
53 54 3.963428 TTGTTCTCACCTCCTCTAAGC 57.037 47.619 0.00 0.00 0.00 3.09
54 55 5.476091 ACTTTGTTCTCACCTCCTCTAAG 57.524 43.478 0.00 0.00 0.00 2.18
55 56 5.454755 CCAACTTTGTTCTCACCTCCTCTAA 60.455 44.000 0.00 0.00 0.00 2.10
56 57 4.040461 CCAACTTTGTTCTCACCTCCTCTA 59.960 45.833 0.00 0.00 0.00 2.43
57 58 3.181450 CCAACTTTGTTCTCACCTCCTCT 60.181 47.826 0.00 0.00 0.00 3.69
58 59 3.142174 CCAACTTTGTTCTCACCTCCTC 58.858 50.000 0.00 0.00 0.00 3.71
59 60 2.777692 TCCAACTTTGTTCTCACCTCCT 59.222 45.455 0.00 0.00 0.00 3.69
60 61 3.142174 CTCCAACTTTGTTCTCACCTCC 58.858 50.000 0.00 0.00 0.00 4.30
61 62 4.073293 TCTCCAACTTTGTTCTCACCTC 57.927 45.455 0.00 0.00 0.00 3.85
62 63 4.080299 ACTTCTCCAACTTTGTTCTCACCT 60.080 41.667 0.00 0.00 0.00 4.00
63 64 4.035675 CACTTCTCCAACTTTGTTCTCACC 59.964 45.833 0.00 0.00 0.00 4.02
64 65 4.636206 ACACTTCTCCAACTTTGTTCTCAC 59.364 41.667 0.00 0.00 0.00 3.51
65 66 4.843728 ACACTTCTCCAACTTTGTTCTCA 58.156 39.130 0.00 0.00 0.00 3.27
66 67 5.354234 TGAACACTTCTCCAACTTTGTTCTC 59.646 40.000 12.14 0.00 42.10 2.87
67 68 5.253330 TGAACACTTCTCCAACTTTGTTCT 58.747 37.500 12.14 0.00 42.10 3.01
68 69 5.560966 TGAACACTTCTCCAACTTTGTTC 57.439 39.130 5.51 5.51 42.00 3.18
69 70 5.888161 AGATGAACACTTCTCCAACTTTGTT 59.112 36.000 0.00 0.00 0.00 2.83
70 71 5.297776 CAGATGAACACTTCTCCAACTTTGT 59.702 40.000 0.00 0.00 0.00 2.83
71 72 5.297776 ACAGATGAACACTTCTCCAACTTTG 59.702 40.000 0.00 0.00 0.00 2.77
72 73 5.297776 CACAGATGAACACTTCTCCAACTTT 59.702 40.000 0.00 0.00 0.00 2.66
73 74 4.818546 CACAGATGAACACTTCTCCAACTT 59.181 41.667 0.00 0.00 0.00 2.66
74 75 4.141620 ACACAGATGAACACTTCTCCAACT 60.142 41.667 0.00 0.00 0.00 3.16
75 76 4.130118 ACACAGATGAACACTTCTCCAAC 58.870 43.478 0.00 0.00 0.00 3.77
76 77 4.422073 ACACAGATGAACACTTCTCCAA 57.578 40.909 0.00 0.00 0.00 3.53
77 78 5.482006 CATACACAGATGAACACTTCTCCA 58.518 41.667 0.00 0.00 0.00 3.86
78 79 4.331168 GCATACACAGATGAACACTTCTCC 59.669 45.833 0.00 0.00 0.00 3.71
79 80 4.931601 TGCATACACAGATGAACACTTCTC 59.068 41.667 0.00 0.00 0.00 2.87
80 81 4.898320 TGCATACACAGATGAACACTTCT 58.102 39.130 0.00 0.00 0.00 2.85
81 82 4.436584 GCTGCATACACAGATGAACACTTC 60.437 45.833 0.00 0.00 40.25 3.01
82 83 3.438087 GCTGCATACACAGATGAACACTT 59.562 43.478 0.00 0.00 40.25 3.16
83 84 3.005554 GCTGCATACACAGATGAACACT 58.994 45.455 0.00 0.00 40.25 3.55
84 85 3.005554 AGCTGCATACACAGATGAACAC 58.994 45.455 1.02 0.00 40.25 3.32
85 86 3.339253 AGCTGCATACACAGATGAACA 57.661 42.857 1.02 0.00 40.25 3.18
86 87 4.409570 CAAAGCTGCATACACAGATGAAC 58.590 43.478 1.02 0.00 40.25 3.18
87 88 3.441222 CCAAAGCTGCATACACAGATGAA 59.559 43.478 1.02 0.00 40.25 2.57
88 89 3.011818 CCAAAGCTGCATACACAGATGA 58.988 45.455 1.02 0.00 40.25 2.92
89 90 3.011818 TCCAAAGCTGCATACACAGATG 58.988 45.455 1.02 0.00 40.25 2.90
90 91 3.354948 TCCAAAGCTGCATACACAGAT 57.645 42.857 1.02 0.00 40.25 2.90
91 92 2.857186 TCCAAAGCTGCATACACAGA 57.143 45.000 1.02 0.00 40.25 3.41
92 93 2.479049 GCATCCAAAGCTGCATACACAG 60.479 50.000 1.02 0.00 40.80 3.66
93 94 1.473677 GCATCCAAAGCTGCATACACA 59.526 47.619 1.02 0.00 38.28 3.72
94 95 1.202336 GGCATCCAAAGCTGCATACAC 60.202 52.381 1.02 0.00 40.18 2.90
95 96 1.105457 GGCATCCAAAGCTGCATACA 58.895 50.000 1.02 0.00 40.18 2.29
96 97 0.386838 GGGCATCCAAAGCTGCATAC 59.613 55.000 1.02 0.00 40.18 2.39
97 98 0.259647 AGGGCATCCAAAGCTGCATA 59.740 50.000 1.02 0.00 40.18 3.14
98 99 0.259647 TAGGGCATCCAAAGCTGCAT 59.740 50.000 1.02 0.00 40.18 3.96
99 100 0.259647 ATAGGGCATCCAAAGCTGCA 59.740 50.000 1.02 0.00 40.18 4.41
100 101 0.672342 CATAGGGCATCCAAAGCTGC 59.328 55.000 0.00 0.00 37.66 5.25
101 102 1.133699 TCCATAGGGCATCCAAAGCTG 60.134 52.381 0.00 0.00 34.83 4.24
102 103 1.133668 GTCCATAGGGCATCCAAAGCT 60.134 52.381 0.00 0.00 34.83 3.74
103 104 1.322442 GTCCATAGGGCATCCAAAGC 58.678 55.000 0.00 0.00 34.83 3.51
104 105 1.140852 TCGTCCATAGGGCATCCAAAG 59.859 52.381 0.00 0.00 34.83 2.77
105 106 1.208706 TCGTCCATAGGGCATCCAAA 58.791 50.000 0.00 0.00 34.83 3.28
106 107 1.434188 ATCGTCCATAGGGCATCCAA 58.566 50.000 0.00 0.00 34.83 3.53
107 108 1.899814 GTATCGTCCATAGGGCATCCA 59.100 52.381 0.00 0.00 34.83 3.41
108 109 1.899814 TGTATCGTCCATAGGGCATCC 59.100 52.381 0.00 0.00 0.00 3.51
109 110 2.671351 CGTGTATCGTCCATAGGGCATC 60.671 54.545 0.00 0.00 34.52 3.91
110 111 1.272490 CGTGTATCGTCCATAGGGCAT 59.728 52.381 0.00 0.00 34.52 4.40
111 112 0.671796 CGTGTATCGTCCATAGGGCA 59.328 55.000 0.00 0.00 34.52 5.36
112 113 3.491581 CGTGTATCGTCCATAGGGC 57.508 57.895 0.00 0.00 34.52 5.19
122 123 3.060363 GGCAACTTTGTCTACGTGTATCG 59.940 47.826 0.00 0.00 46.00 2.92
123 124 3.991773 TGGCAACTTTGTCTACGTGTATC 59.008 43.478 0.00 0.00 33.01 2.24
124 125 3.997762 TGGCAACTTTGTCTACGTGTAT 58.002 40.909 0.00 0.00 33.01 2.29
125 126 3.455990 TGGCAACTTTGTCTACGTGTA 57.544 42.857 0.00 0.00 33.01 2.90
126 127 2.319136 TGGCAACTTTGTCTACGTGT 57.681 45.000 0.00 0.00 33.01 4.49
127 128 2.095768 CCATGGCAACTTTGTCTACGTG 60.096 50.000 0.00 0.00 33.01 4.49
128 129 2.151202 CCATGGCAACTTTGTCTACGT 58.849 47.619 0.00 0.00 33.01 3.57
129 130 2.151202 ACCATGGCAACTTTGTCTACG 58.849 47.619 13.04 0.00 33.01 3.51
130 131 5.414454 TGAATACCATGGCAACTTTGTCTAC 59.586 40.000 13.04 0.00 33.01 2.59
131 132 5.565509 TGAATACCATGGCAACTTTGTCTA 58.434 37.500 13.04 0.00 33.01 2.59
132 133 4.406456 TGAATACCATGGCAACTTTGTCT 58.594 39.130 13.04 0.00 33.01 3.41
133 134 4.782019 TGAATACCATGGCAACTTTGTC 57.218 40.909 13.04 0.00 37.61 3.18
134 135 5.743636 ATTGAATACCATGGCAACTTTGT 57.256 34.783 13.04 0.00 37.61 2.83
135 136 6.875195 AGAAATTGAATACCATGGCAACTTTG 59.125 34.615 13.04 0.00 37.61 2.77
136 137 6.875195 CAGAAATTGAATACCATGGCAACTTT 59.125 34.615 13.04 9.91 37.61 2.66
137 138 6.400568 CAGAAATTGAATACCATGGCAACTT 58.599 36.000 13.04 3.80 37.61 2.66
138 139 5.105228 CCAGAAATTGAATACCATGGCAACT 60.105 40.000 13.04 0.00 37.61 3.16
139 140 5.111293 CCAGAAATTGAATACCATGGCAAC 58.889 41.667 13.04 1.59 0.00 4.17
140 141 4.776837 ACCAGAAATTGAATACCATGGCAA 59.223 37.500 13.04 8.39 0.00 4.52
141 142 4.160065 CACCAGAAATTGAATACCATGGCA 59.840 41.667 13.04 0.00 0.00 4.92
142 143 4.441913 CCACCAGAAATTGAATACCATGGC 60.442 45.833 13.04 0.00 0.00 4.40
143 144 4.441913 GCCACCAGAAATTGAATACCATGG 60.442 45.833 11.19 11.19 0.00 3.66
144 145 4.160065 TGCCACCAGAAATTGAATACCATG 59.840 41.667 0.00 0.00 0.00 3.66
145 146 4.160252 GTGCCACCAGAAATTGAATACCAT 59.840 41.667 0.00 0.00 0.00 3.55
146 147 3.509575 GTGCCACCAGAAATTGAATACCA 59.490 43.478 0.00 0.00 0.00 3.25
147 148 3.763897 AGTGCCACCAGAAATTGAATACC 59.236 43.478 0.00 0.00 0.00 2.73
148 149 4.380867 CCAGTGCCACCAGAAATTGAATAC 60.381 45.833 0.00 0.00 0.00 1.89
149 150 3.763360 CCAGTGCCACCAGAAATTGAATA 59.237 43.478 0.00 0.00 0.00 1.75
150 151 2.564062 CCAGTGCCACCAGAAATTGAAT 59.436 45.455 0.00 0.00 0.00 2.57
151 152 1.962807 CCAGTGCCACCAGAAATTGAA 59.037 47.619 0.00 0.00 0.00 2.69
152 153 1.133513 ACCAGTGCCACCAGAAATTGA 60.134 47.619 0.00 0.00 0.00 2.57
153 154 1.000060 CACCAGTGCCACCAGAAATTG 60.000 52.381 0.00 0.00 0.00 2.32
154 155 1.331214 CACCAGTGCCACCAGAAATT 58.669 50.000 0.00 0.00 0.00 1.82
155 156 0.540365 CCACCAGTGCCACCAGAAAT 60.540 55.000 0.00 0.00 0.00 2.17
156 157 1.152777 CCACCAGTGCCACCAGAAA 60.153 57.895 0.00 0.00 0.00 2.52
157 158 1.640593 TTCCACCAGTGCCACCAGAA 61.641 55.000 0.00 0.00 0.00 3.02
158 159 1.426251 ATTCCACCAGTGCCACCAGA 61.426 55.000 0.00 0.00 0.00 3.86
159 160 0.327924 TATTCCACCAGTGCCACCAG 59.672 55.000 0.00 0.00 0.00 4.00
160 161 0.774276 TTATTCCACCAGTGCCACCA 59.226 50.000 0.00 0.00 0.00 4.17
161 162 2.024414 GATTATTCCACCAGTGCCACC 58.976 52.381 0.00 0.00 0.00 4.61
162 163 1.670811 CGATTATTCCACCAGTGCCAC 59.329 52.381 0.00 0.00 0.00 5.01
163 164 1.408127 CCGATTATTCCACCAGTGCCA 60.408 52.381 0.00 0.00 0.00 4.92
164 165 1.134220 TCCGATTATTCCACCAGTGCC 60.134 52.381 0.00 0.00 0.00 5.01
165 166 2.325583 TCCGATTATTCCACCAGTGC 57.674 50.000 0.00 0.00 0.00 4.40
166 167 3.605634 TGTTCCGATTATTCCACCAGTG 58.394 45.455 0.00 0.00 0.00 3.66
167 168 3.517901 TCTGTTCCGATTATTCCACCAGT 59.482 43.478 0.00 0.00 0.00 4.00
168 169 4.122776 CTCTGTTCCGATTATTCCACCAG 58.877 47.826 0.00 0.00 0.00 4.00
169 170 3.517901 ACTCTGTTCCGATTATTCCACCA 59.482 43.478 0.00 0.00 0.00 4.17
170 171 4.138487 ACTCTGTTCCGATTATTCCACC 57.862 45.455 0.00 0.00 0.00 4.61
171 172 5.163754 CCAAACTCTGTTCCGATTATTCCAC 60.164 44.000 0.00 0.00 0.00 4.02
172 173 4.941263 CCAAACTCTGTTCCGATTATTCCA 59.059 41.667 0.00 0.00 0.00 3.53
173 174 5.183228 TCCAAACTCTGTTCCGATTATTCC 58.817 41.667 0.00 0.00 0.00 3.01
174 175 6.737254 TTCCAAACTCTGTTCCGATTATTC 57.263 37.500 0.00 0.00 0.00 1.75
175 176 6.151144 CCTTTCCAAACTCTGTTCCGATTATT 59.849 38.462 0.00 0.00 0.00 1.40
176 177 5.648092 CCTTTCCAAACTCTGTTCCGATTAT 59.352 40.000 0.00 0.00 0.00 1.28
177 178 5.001232 CCTTTCCAAACTCTGTTCCGATTA 58.999 41.667 0.00 0.00 0.00 1.75
178 179 3.821033 CCTTTCCAAACTCTGTTCCGATT 59.179 43.478 0.00 0.00 0.00 3.34
179 180 3.181443 ACCTTTCCAAACTCTGTTCCGAT 60.181 43.478 0.00 0.00 0.00 4.18
180 181 2.171870 ACCTTTCCAAACTCTGTTCCGA 59.828 45.455 0.00 0.00 0.00 4.55
181 182 2.572290 ACCTTTCCAAACTCTGTTCCG 58.428 47.619 0.00 0.00 0.00 4.30
182 183 6.096423 AGTTTTACCTTTCCAAACTCTGTTCC 59.904 38.462 0.00 0.00 36.23 3.62
183 184 7.096884 AGTTTTACCTTTCCAAACTCTGTTC 57.903 36.000 0.00 0.00 36.23 3.18
184 185 8.050930 TCTAGTTTTACCTTTCCAAACTCTGTT 58.949 33.333 0.00 0.00 40.44 3.16
185 186 7.571025 TCTAGTTTTACCTTTCCAAACTCTGT 58.429 34.615 0.00 0.00 40.44 3.41
186 187 8.507249 CATCTAGTTTTACCTTTCCAAACTCTG 58.493 37.037 0.00 0.00 40.44 3.35
187 188 7.665974 CCATCTAGTTTTACCTTTCCAAACTCT 59.334 37.037 0.00 0.00 40.44 3.24
188 189 7.575155 GCCATCTAGTTTTACCTTTCCAAACTC 60.575 40.741 0.00 0.00 40.44 3.01
189 190 6.208797 GCCATCTAGTTTTACCTTTCCAAACT 59.791 38.462 0.00 0.00 42.20 2.66
190 191 6.015772 TGCCATCTAGTTTTACCTTTCCAAAC 60.016 38.462 0.00 0.00 0.00 2.93
191 192 6.071984 TGCCATCTAGTTTTACCTTTCCAAA 58.928 36.000 0.00 0.00 0.00 3.28
192 193 5.636123 TGCCATCTAGTTTTACCTTTCCAA 58.364 37.500 0.00 0.00 0.00 3.53
193 194 5.249780 TGCCATCTAGTTTTACCTTTCCA 57.750 39.130 0.00 0.00 0.00 3.53
194 195 4.096532 GCTGCCATCTAGTTTTACCTTTCC 59.903 45.833 0.00 0.00 0.00 3.13
195 196 4.096532 GGCTGCCATCTAGTTTTACCTTTC 59.903 45.833 15.17 0.00 0.00 2.62
196 197 4.017126 GGCTGCCATCTAGTTTTACCTTT 58.983 43.478 15.17 0.00 0.00 3.11
197 198 3.010138 TGGCTGCCATCTAGTTTTACCTT 59.990 43.478 19.30 0.00 0.00 3.50
198 199 2.576191 TGGCTGCCATCTAGTTTTACCT 59.424 45.455 19.30 0.00 0.00 3.08
199 200 2.999331 TGGCTGCCATCTAGTTTTACC 58.001 47.619 19.30 0.00 0.00 2.85
200 201 5.125417 TCATTTGGCTGCCATCTAGTTTTAC 59.875 40.000 24.03 0.00 31.53 2.01
201 202 5.260424 TCATTTGGCTGCCATCTAGTTTTA 58.740 37.500 24.03 0.16 31.53 1.52
202 203 4.088634 TCATTTGGCTGCCATCTAGTTTT 58.911 39.130 24.03 0.00 31.53 2.43
203 204 3.700538 TCATTTGGCTGCCATCTAGTTT 58.299 40.909 24.03 0.00 31.53 2.66
204 205 3.370840 TCATTTGGCTGCCATCTAGTT 57.629 42.857 24.03 1.00 31.53 2.24
205 206 3.370840 TTCATTTGGCTGCCATCTAGT 57.629 42.857 24.03 0.99 31.53 2.57
206 207 4.931661 ATTTCATTTGGCTGCCATCTAG 57.068 40.909 24.03 12.86 31.53 2.43
207 208 6.324512 ACATAATTTCATTTGGCTGCCATCTA 59.675 34.615 24.03 11.53 31.53 1.98
208 209 5.129815 ACATAATTTCATTTGGCTGCCATCT 59.870 36.000 24.03 10.03 31.53 2.90
209 210 5.362263 ACATAATTTCATTTGGCTGCCATC 58.638 37.500 24.03 0.00 31.53 3.51
210 211 5.362105 ACATAATTTCATTTGGCTGCCAT 57.638 34.783 24.03 5.41 31.53 4.40
211 212 4.822685 ACATAATTTCATTTGGCTGCCA 57.177 36.364 19.30 19.30 0.00 4.92
212 213 5.642919 TGAAACATAATTTCATTTGGCTGCC 59.357 36.000 12.87 12.87 33.90 4.85
213 214 6.591062 TCTGAAACATAATTTCATTTGGCTGC 59.409 34.615 2.75 0.00 37.72 5.25
214 215 7.816031 AGTCTGAAACATAATTTCATTTGGCTG 59.184 33.333 2.75 0.00 37.72 4.85
215 216 7.899973 AGTCTGAAACATAATTTCATTTGGCT 58.100 30.769 2.75 0.00 37.72 4.75
216 217 8.538409 AAGTCTGAAACATAATTTCATTTGGC 57.462 30.769 2.75 0.00 37.72 4.52
220 221 8.992073 GGCAAAAGTCTGAAACATAATTTCATT 58.008 29.630 2.75 0.00 37.72 2.57
221 222 8.149647 TGGCAAAAGTCTGAAACATAATTTCAT 58.850 29.630 2.75 0.00 37.72 2.57
222 223 7.437862 GTGGCAAAAGTCTGAAACATAATTTCA 59.562 33.333 0.00 2.38 36.98 2.69
223 224 7.095649 GGTGGCAAAAGTCTGAAACATAATTTC 60.096 37.037 0.00 0.00 0.00 2.17
224 225 6.705825 GGTGGCAAAAGTCTGAAACATAATTT 59.294 34.615 0.00 0.00 0.00 1.82
225 226 6.183360 TGGTGGCAAAAGTCTGAAACATAATT 60.183 34.615 0.00 0.00 0.00 1.40
226 227 5.304101 TGGTGGCAAAAGTCTGAAACATAAT 59.696 36.000 0.00 0.00 0.00 1.28
227 228 4.646945 TGGTGGCAAAAGTCTGAAACATAA 59.353 37.500 0.00 0.00 0.00 1.90
228 229 4.211125 TGGTGGCAAAAGTCTGAAACATA 58.789 39.130 0.00 0.00 0.00 2.29
229 230 3.030291 TGGTGGCAAAAGTCTGAAACAT 58.970 40.909 0.00 0.00 0.00 2.71
230 231 2.451490 TGGTGGCAAAAGTCTGAAACA 58.549 42.857 0.00 0.00 0.00 2.83
231 232 3.518634 TTGGTGGCAAAAGTCTGAAAC 57.481 42.857 0.00 0.00 0.00 2.78
232 233 3.740764 GCATTGGTGGCAAAAGTCTGAAA 60.741 43.478 0.00 0.00 0.00 2.69
233 234 2.224018 GCATTGGTGGCAAAAGTCTGAA 60.224 45.455 0.00 0.00 0.00 3.02
234 235 1.340889 GCATTGGTGGCAAAAGTCTGA 59.659 47.619 0.00 0.00 0.00 3.27
235 236 1.342174 AGCATTGGTGGCAAAAGTCTG 59.658 47.619 0.00 0.00 0.00 3.51
236 237 1.342174 CAGCATTGGTGGCAAAAGTCT 59.658 47.619 7.98 0.00 0.00 3.24
237 238 1.340889 TCAGCATTGGTGGCAAAAGTC 59.659 47.619 15.36 0.00 0.00 3.01
238 239 1.412079 TCAGCATTGGTGGCAAAAGT 58.588 45.000 15.36 0.00 0.00 2.66
239 240 2.529780 TTCAGCATTGGTGGCAAAAG 57.470 45.000 15.36 0.00 0.00 2.27
240 241 3.306641 GGTATTCAGCATTGGTGGCAAAA 60.307 43.478 15.36 3.40 0.00 2.44
241 242 2.233431 GGTATTCAGCATTGGTGGCAAA 59.767 45.455 15.36 3.74 0.00 3.68
242 243 1.824230 GGTATTCAGCATTGGTGGCAA 59.176 47.619 15.36 4.43 0.00 4.52
243 244 1.005805 AGGTATTCAGCATTGGTGGCA 59.994 47.619 15.36 3.86 0.00 4.92
244 245 1.406539 CAGGTATTCAGCATTGGTGGC 59.593 52.381 15.36 4.53 0.00 5.01
245 246 2.684881 GACAGGTATTCAGCATTGGTGG 59.315 50.000 15.36 0.86 0.00 4.61
246 247 2.352651 CGACAGGTATTCAGCATTGGTG 59.647 50.000 9.57 9.57 0.00 4.17
247 248 2.632377 CGACAGGTATTCAGCATTGGT 58.368 47.619 0.00 0.00 0.00 3.67
248 249 1.942657 CCGACAGGTATTCAGCATTGG 59.057 52.381 0.00 0.00 0.00 3.16
261 262 4.351938 TTCACCGCGACCGACAGG 62.352 66.667 8.23 0.00 45.13 4.00
262 263 2.805353 CTTCACCGCGACCGACAG 60.805 66.667 8.23 0.00 36.29 3.51
263 264 3.289062 TCTTCACCGCGACCGACA 61.289 61.111 8.23 0.00 36.29 4.35
264 265 2.804090 GTCTTCACCGCGACCGAC 60.804 66.667 8.23 2.82 36.29 4.79
265 266 2.981909 AGTCTTCACCGCGACCGA 60.982 61.111 8.23 0.00 36.29 4.69
266 267 2.742710 TTCAGTCTTCACCGCGACCG 62.743 60.000 8.23 0.00 0.00 4.79
267 268 0.599204 TTTCAGTCTTCACCGCGACC 60.599 55.000 8.23 0.00 0.00 4.79
268 269 1.214367 TTTTCAGTCTTCACCGCGAC 58.786 50.000 8.23 0.00 0.00 5.19
269 270 1.864711 CTTTTTCAGTCTTCACCGCGA 59.135 47.619 8.23 0.00 0.00 5.87
270 271 1.069906 CCTTTTTCAGTCTTCACCGCG 60.070 52.381 0.00 0.00 0.00 6.46
271 272 2.218603 TCCTTTTTCAGTCTTCACCGC 58.781 47.619 0.00 0.00 0.00 5.68
272 273 3.877508 ACTTCCTTTTTCAGTCTTCACCG 59.122 43.478 0.00 0.00 0.00 4.94
273 274 6.937436 TTACTTCCTTTTTCAGTCTTCACC 57.063 37.500 0.00 0.00 0.00 4.02
309 310 1.203300 TCCTCTGGTGGTCTCCATTGA 60.203 52.381 0.00 0.00 35.28 2.57
335 336 7.512130 AGCACCATCAATATTGATCTTCAGTA 58.488 34.615 24.94 0.00 45.62 2.74
337 338 6.879276 AGCACCATCAATATTGATCTTCAG 57.121 37.500 24.94 14.73 45.62 3.02
391 392 4.872691 CCTGTAATCTCTCACAATCACACC 59.127 45.833 0.00 0.00 0.00 4.16
529 530 6.090763 TGTGAGTCAGTTTCTACAATTATGCG 59.909 38.462 0.00 0.00 0.00 4.73
535 536 5.992217 GGAGTTGTGAGTCAGTTTCTACAAT 59.008 40.000 0.00 0.00 31.68 2.71
549 550 0.873054 CAGCTGCAAGGAGTTGTGAG 59.127 55.000 0.00 0.00 35.92 3.51
663 664 1.263356 CCTCCCTACGACAAACCTGA 58.737 55.000 0.00 0.00 0.00 3.86
894 895 5.590530 TTGCTTCCTCTGCTTTTGTTTTA 57.409 34.783 0.00 0.00 0.00 1.52
895 896 4.470334 TTGCTTCCTCTGCTTTTGTTTT 57.530 36.364 0.00 0.00 0.00 2.43
896 897 4.436332 CTTTGCTTCCTCTGCTTTTGTTT 58.564 39.130 0.00 0.00 0.00 2.83
897 898 3.739209 GCTTTGCTTCCTCTGCTTTTGTT 60.739 43.478 0.00 0.00 0.00 2.83
898 899 2.223900 GCTTTGCTTCCTCTGCTTTTGT 60.224 45.455 0.00 0.00 0.00 2.83
899 900 2.223876 TGCTTTGCTTCCTCTGCTTTTG 60.224 45.455 0.00 0.00 0.00 2.44
959 960 0.961019 GACTTGGTGCAATGCAGGAA 59.039 50.000 8.73 3.25 40.08 3.36
1242 1243 1.673808 GGTTGTAGGAGACGGCGGAT 61.674 60.000 13.24 0.00 0.00 4.18
1656 1657 1.395045 CCTAGATCTCGCCAGGCACA 61.395 60.000 13.30 0.00 0.00 4.57
1738 1741 1.399440 CCATCGCCATGAGAACAAGTG 59.601 52.381 0.00 0.00 30.57 3.16
1803 1808 9.820229 TCAACTATTTTGTATTGTTTCGTGATC 57.180 29.630 0.00 0.00 0.00 2.92
1830 1835 2.612212 CGTTTCAGTGTGCTTGTAAGGT 59.388 45.455 0.00 0.00 0.00 3.50
1866 1871 9.940974 TGTCTTAGGGTATTCTAGGTGTTTATA 57.059 33.333 0.00 0.00 0.00 0.98
1880 1885 9.220906 TCTTATGTTATGGTTGTCTTAGGGTAT 57.779 33.333 0.00 0.00 0.00 2.73
1964 1969 0.732571 CGCCTGGTTGCATATCGTTT 59.267 50.000 0.00 0.00 0.00 3.60
1971 1976 4.060038 GCTTGCGCCTGGTTGCAT 62.060 61.111 14.86 0.00 41.42 3.96
2219 2224 1.957177 CCTTCCTCTACGCTGATGCTA 59.043 52.381 0.00 0.00 36.97 3.49
2230 2235 4.021016 GCTGTTGTTCTTCTCCTTCCTCTA 60.021 45.833 0.00 0.00 0.00 2.43
2642 2649 0.745845 ATGCACGTCAAGGAGCCATC 60.746 55.000 0.00 0.00 0.00 3.51
2643 2650 0.322816 AATGCACGTCAAGGAGCCAT 60.323 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.