Multiple sequence alignment - TraesCS1B01G111800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G111800 chr1B 100.000 3080 0 0 1 3080 130000406 130003485 0.000000 5688.0
1 TraesCS1B01G111800 chr1A 92.688 2571 152 14 516 3057 96362170 96359607 0.000000 3674.0
2 TraesCS1B01G111800 chr1A 92.308 39 3 0 88 126 96363622 96363584 0.000429 56.5
3 TraesCS1B01G111800 chr1D 91.856 2603 153 15 516 3080 79094217 79096798 0.000000 3578.0
4 TraesCS1B01G111800 chr1D 92.308 39 3 0 88 126 79093175 79093213 0.000429 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G111800 chr1B 130000406 130003485 3079 False 5688.00 5688 100.000 1 3080 1 chr1B.!!$F1 3079
1 TraesCS1B01G111800 chr1A 96359607 96363622 4015 True 1865.25 3674 92.498 88 3057 2 chr1A.!!$R1 2969
2 TraesCS1B01G111800 chr1D 79093175 79096798 3623 False 1817.25 3578 92.082 88 3080 2 chr1D.!!$F1 2992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 1591 0.036952 TCTGCTTGCTCCTACACTGC 60.037 55.0 0.0 0.0 0.0 4.40 F
446 1701 0.108615 CTTCACTCCACCCAGCGTAG 60.109 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 2661 0.107410 TACCATCAACCGCCCACATC 60.107 55.0 0.0 0.0 0.0 3.06 R
2117 3479 0.109132 CTTTGAACCGCTGAATGGGC 60.109 55.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.372742 GCGACTAGTAATTTTCGAGGAAC 57.627 43.478 0.00 0.00 33.20 3.62
24 25 6.261118 GCGACTAGTAATTTTCGAGGAACTA 58.739 40.000 0.00 0.00 41.55 2.24
25 26 6.749118 GCGACTAGTAATTTTCGAGGAACTAA 59.251 38.462 0.00 0.00 41.55 2.24
26 27 7.434602 GCGACTAGTAATTTTCGAGGAACTAAT 59.565 37.037 0.00 0.00 41.55 1.73
27 28 8.956014 CGACTAGTAATTTTCGAGGAACTAATC 58.044 37.037 0.00 0.00 41.55 1.75
28 29 9.798994 GACTAGTAATTTTCGAGGAACTAATCA 57.201 33.333 0.00 0.00 41.55 2.57
32 33 8.936864 AGTAATTTTCGAGGAACTAATCAAGTG 58.063 33.333 0.00 0.00 41.55 3.16
33 34 7.979444 AATTTTCGAGGAACTAATCAAGTGA 57.021 32.000 0.00 0.00 41.55 3.41
34 35 7.979444 ATTTTCGAGGAACTAATCAAGTGAA 57.021 32.000 0.00 0.00 41.55 3.18
35 36 7.979444 TTTTCGAGGAACTAATCAAGTGAAT 57.021 32.000 0.00 0.00 41.55 2.57
36 37 6.968131 TTCGAGGAACTAATCAAGTGAATG 57.032 37.500 0.00 0.00 41.55 2.67
37 38 4.870426 TCGAGGAACTAATCAAGTGAATGC 59.130 41.667 0.00 0.00 41.55 3.56
38 39 4.631377 CGAGGAACTAATCAAGTGAATGCA 59.369 41.667 0.00 0.00 41.55 3.96
39 40 5.220548 CGAGGAACTAATCAAGTGAATGCAG 60.221 44.000 0.00 0.00 41.55 4.41
40 41 5.809001 AGGAACTAATCAAGTGAATGCAGA 58.191 37.500 0.00 0.00 38.88 4.26
41 42 5.645497 AGGAACTAATCAAGTGAATGCAGAC 59.355 40.000 0.00 0.00 38.88 3.51
42 43 5.446473 GGAACTAATCAAGTGAATGCAGACG 60.446 44.000 0.00 0.00 38.88 4.18
43 44 3.935203 ACTAATCAAGTGAATGCAGACGG 59.065 43.478 0.00 0.00 36.93 4.79
44 45 2.768253 ATCAAGTGAATGCAGACGGA 57.232 45.000 0.00 0.00 0.00 4.69
45 46 2.084610 TCAAGTGAATGCAGACGGAG 57.915 50.000 0.00 0.00 0.00 4.63
46 47 1.081892 CAAGTGAATGCAGACGGAGG 58.918 55.000 0.00 0.00 0.00 4.30
47 48 0.674895 AAGTGAATGCAGACGGAGGC 60.675 55.000 0.00 0.00 0.00 4.70
48 49 2.109126 GTGAATGCAGACGGAGGCC 61.109 63.158 0.00 0.00 0.00 5.19
64 65 6.548441 CGGAGGCCGTAATAAATCAAATAA 57.452 37.500 0.00 0.00 42.73 1.40
65 66 6.368213 CGGAGGCCGTAATAAATCAAATAAC 58.632 40.000 0.00 0.00 42.73 1.89
66 67 6.017770 CGGAGGCCGTAATAAATCAAATAACA 60.018 38.462 0.00 0.00 42.73 2.41
67 68 7.360361 GGAGGCCGTAATAAATCAAATAACAG 58.640 38.462 0.00 0.00 0.00 3.16
68 69 7.012989 GGAGGCCGTAATAAATCAAATAACAGT 59.987 37.037 0.00 0.00 0.00 3.55
69 70 7.703328 AGGCCGTAATAAATCAAATAACAGTG 58.297 34.615 0.00 0.00 0.00 3.66
70 71 6.416750 GGCCGTAATAAATCAAATAACAGTGC 59.583 38.462 0.00 0.00 0.00 4.40
71 72 7.193595 GCCGTAATAAATCAAATAACAGTGCT 58.806 34.615 0.00 0.00 0.00 4.40
72 73 7.700656 GCCGTAATAAATCAAATAACAGTGCTT 59.299 33.333 0.00 0.00 0.00 3.91
73 74 9.009327 CCGTAATAAATCAAATAACAGTGCTTG 57.991 33.333 0.00 0.00 0.00 4.01
74 75 9.554724 CGTAATAAATCAAATAACAGTGCTTGT 57.445 29.630 0.00 0.00 43.45 3.16
84 85 1.668751 ACAGTGCTTGTTAACGTGTGG 59.331 47.619 0.26 0.00 36.31 4.17
85 86 1.937223 CAGTGCTTGTTAACGTGTGGA 59.063 47.619 0.26 0.00 0.00 4.02
86 87 2.548057 CAGTGCTTGTTAACGTGTGGAT 59.452 45.455 0.26 0.00 0.00 3.41
115 116 0.392998 TGCGGGGCAGAGAAGAAATC 60.393 55.000 0.00 0.00 33.32 2.17
140 1395 6.073819 CCGGACATTTTGATGGAAAAAGTTTC 60.074 38.462 0.00 0.00 35.98 2.78
141 1396 6.701400 CGGACATTTTGATGGAAAAAGTTTCT 59.299 34.615 1.11 0.00 35.98 2.52
145 1400 9.447157 ACATTTTGATGGAAAAAGTTTCTGAAA 57.553 25.926 0.00 0.00 37.10 2.69
146 1401 9.706846 CATTTTGATGGAAAAAGTTTCTGAAAC 57.293 29.630 22.40 22.40 37.10 2.78
159 1414 5.365619 GTTTCTGAAACTTACTGTCCTGGA 58.634 41.667 22.55 0.00 38.35 3.86
161 1416 4.957296 TCTGAAACTTACTGTCCTGGAAC 58.043 43.478 0.00 0.00 0.00 3.62
162 1417 4.654262 TCTGAAACTTACTGTCCTGGAACT 59.346 41.667 0.00 0.00 0.00 3.01
163 1418 5.130477 TCTGAAACTTACTGTCCTGGAACTT 59.870 40.000 0.00 0.00 0.00 2.66
165 1420 5.588648 TGAAACTTACTGTCCTGGAACTTTG 59.411 40.000 0.00 0.00 0.00 2.77
166 1421 3.477530 ACTTACTGTCCTGGAACTTTGC 58.522 45.455 0.00 0.00 0.00 3.68
169 1424 3.788227 ACTGTCCTGGAACTTTGCATA 57.212 42.857 0.00 0.00 0.00 3.14
170 1425 3.679389 ACTGTCCTGGAACTTTGCATAG 58.321 45.455 0.00 2.27 0.00 2.23
171 1426 3.073062 ACTGTCCTGGAACTTTGCATAGT 59.927 43.478 3.73 3.73 0.00 2.12
172 1427 4.074970 CTGTCCTGGAACTTTGCATAGTT 58.925 43.478 20.58 20.58 40.92 2.24
178 1433 2.989422 AACTTTGCATAGTTCACCGC 57.011 45.000 15.76 0.00 33.12 5.68
181 1436 0.521291 TTTGCATAGTTCACCGCTGC 59.479 50.000 0.00 0.00 0.00 5.25
182 1437 1.305219 TTGCATAGTTCACCGCTGCC 61.305 55.000 0.00 0.00 31.89 4.85
183 1438 1.450312 GCATAGTTCACCGCTGCCT 60.450 57.895 0.00 0.00 0.00 4.75
184 1439 1.432270 GCATAGTTCACCGCTGCCTC 61.432 60.000 0.00 0.00 0.00 4.70
185 1440 0.811616 CATAGTTCACCGCTGCCTCC 60.812 60.000 0.00 0.00 0.00 4.30
186 1441 2.298158 ATAGTTCACCGCTGCCTCCG 62.298 60.000 0.00 0.00 0.00 4.63
197 1452 4.241555 GCCTCCGGCGTCCATCAT 62.242 66.667 6.01 0.00 39.62 2.45
198 1453 2.029666 CCTCCGGCGTCCATCATC 59.970 66.667 6.01 0.00 0.00 2.92
199 1454 2.796193 CCTCCGGCGTCCATCATCA 61.796 63.158 6.01 0.00 0.00 3.07
200 1455 1.592669 CTCCGGCGTCCATCATCAC 60.593 63.158 6.01 0.00 0.00 3.06
201 1456 2.186644 CCGGCGTCCATCATCACA 59.813 61.111 6.01 0.00 0.00 3.58
202 1457 1.227645 CCGGCGTCCATCATCACAT 60.228 57.895 6.01 0.00 0.00 3.21
203 1458 1.224069 CCGGCGTCCATCATCACATC 61.224 60.000 6.01 0.00 0.00 3.06
204 1459 0.530431 CGGCGTCCATCATCACATCA 60.530 55.000 0.00 0.00 0.00 3.07
205 1460 0.940126 GGCGTCCATCATCACATCAC 59.060 55.000 0.00 0.00 0.00 3.06
206 1461 1.473965 GGCGTCCATCATCACATCACT 60.474 52.381 0.00 0.00 0.00 3.41
207 1462 2.283298 GCGTCCATCATCACATCACTT 58.717 47.619 0.00 0.00 0.00 3.16
208 1463 2.031314 GCGTCCATCATCACATCACTTG 59.969 50.000 0.00 0.00 0.00 3.16
209 1464 2.031314 CGTCCATCATCACATCACTTGC 59.969 50.000 0.00 0.00 0.00 4.01
210 1465 3.011818 GTCCATCATCACATCACTTGCA 58.988 45.455 0.00 0.00 0.00 4.08
211 1466 3.064958 GTCCATCATCACATCACTTGCAG 59.935 47.826 0.00 0.00 0.00 4.41
212 1467 3.054948 TCCATCATCACATCACTTGCAGA 60.055 43.478 0.00 0.00 0.00 4.26
213 1468 3.312697 CCATCATCACATCACTTGCAGAG 59.687 47.826 0.00 0.00 0.00 3.35
214 1469 3.690475 TCATCACATCACTTGCAGAGT 57.310 42.857 0.00 0.00 39.89 3.24
215 1470 4.806640 TCATCACATCACTTGCAGAGTA 57.193 40.909 1.95 0.00 36.65 2.59
216 1471 5.349061 TCATCACATCACTTGCAGAGTAT 57.651 39.130 1.95 0.00 36.65 2.12
217 1472 5.354767 TCATCACATCACTTGCAGAGTATC 58.645 41.667 1.95 0.00 36.65 2.24
218 1473 4.128925 TCACATCACTTGCAGAGTATCC 57.871 45.455 1.95 0.00 36.65 2.59
219 1474 3.515104 TCACATCACTTGCAGAGTATCCA 59.485 43.478 1.95 0.00 36.65 3.41
220 1475 4.162888 TCACATCACTTGCAGAGTATCCAT 59.837 41.667 1.95 0.00 36.65 3.41
221 1476 4.510711 CACATCACTTGCAGAGTATCCATC 59.489 45.833 1.95 0.00 36.65 3.51
222 1477 4.408270 ACATCACTTGCAGAGTATCCATCT 59.592 41.667 1.95 0.00 36.65 2.90
223 1478 4.662468 TCACTTGCAGAGTATCCATCTC 57.338 45.455 1.95 0.00 36.65 2.75
224 1479 4.026052 TCACTTGCAGAGTATCCATCTCA 58.974 43.478 1.95 0.00 36.65 3.27
225 1480 4.099113 TCACTTGCAGAGTATCCATCTCAG 59.901 45.833 1.95 0.00 36.65 3.35
226 1481 3.387374 ACTTGCAGAGTATCCATCTCAGG 59.613 47.826 0.44 0.00 36.65 3.86
227 1482 3.319031 TGCAGAGTATCCATCTCAGGA 57.681 47.619 0.00 0.00 43.01 3.86
241 1496 2.354109 TCAGGATGAATATCGAGCGC 57.646 50.000 0.00 0.00 45.97 5.92
242 1497 1.067565 TCAGGATGAATATCGAGCGCC 60.068 52.381 2.29 0.00 45.97 6.53
243 1498 0.109086 AGGATGAATATCGAGCGCCG 60.109 55.000 2.29 8.02 40.25 6.46
244 1499 0.388649 GGATGAATATCGAGCGCCGT 60.389 55.000 16.00 7.94 39.75 5.68
245 1500 1.135489 GGATGAATATCGAGCGCCGTA 60.135 52.381 16.00 9.51 39.75 4.02
246 1501 1.912110 GATGAATATCGAGCGCCGTAC 59.088 52.381 16.00 0.47 39.75 3.67
248 1503 0.385223 GAATATCGAGCGCCGTACGT 60.385 55.000 15.21 0.00 46.11 3.57
249 1504 0.659417 AATATCGAGCGCCGTACGTG 60.659 55.000 15.21 7.46 46.11 4.49
250 1505 2.453773 ATATCGAGCGCCGTACGTGG 62.454 60.000 15.21 6.48 46.11 4.94
253 1508 4.712425 GAGCGCCGTACGTGGTGT 62.712 66.667 15.21 0.00 46.11 4.16
256 1511 4.345962 CGCCGTACGTGGTGTGGA 62.346 66.667 15.21 0.00 36.87 4.02
257 1512 2.029369 GCCGTACGTGGTGTGGAA 59.971 61.111 15.21 0.00 0.00 3.53
258 1513 2.025418 GCCGTACGTGGTGTGGAAG 61.025 63.158 15.21 0.00 0.00 3.46
259 1514 1.373748 CCGTACGTGGTGTGGAAGG 60.374 63.158 15.21 0.00 0.00 3.46
260 1515 1.364901 CGTACGTGGTGTGGAAGGT 59.635 57.895 7.22 0.00 0.00 3.50
261 1516 0.942410 CGTACGTGGTGTGGAAGGTG 60.942 60.000 7.22 0.00 0.00 4.00
262 1517 0.390124 GTACGTGGTGTGGAAGGTGA 59.610 55.000 0.00 0.00 0.00 4.02
263 1518 0.390124 TACGTGGTGTGGAAGGTGAC 59.610 55.000 0.00 0.00 0.00 3.67
264 1519 1.597027 CGTGGTGTGGAAGGTGACC 60.597 63.158 0.00 0.00 0.00 4.02
265 1520 1.597027 GTGGTGTGGAAGGTGACCG 60.597 63.158 0.00 0.00 0.00 4.79
266 1521 1.762858 TGGTGTGGAAGGTGACCGA 60.763 57.895 0.00 0.00 0.00 4.69
267 1522 1.125093 TGGTGTGGAAGGTGACCGAT 61.125 55.000 0.00 0.00 0.00 4.18
268 1523 0.899720 GGTGTGGAAGGTGACCGATA 59.100 55.000 0.00 0.00 0.00 2.92
269 1524 1.405121 GGTGTGGAAGGTGACCGATAC 60.405 57.143 0.00 0.00 0.00 2.24
270 1525 1.274167 GTGTGGAAGGTGACCGATACA 59.726 52.381 0.00 0.00 0.00 2.29
271 1526 1.274167 TGTGGAAGGTGACCGATACAC 59.726 52.381 16.03 16.03 37.51 2.90
272 1527 0.528924 TGGAAGGTGACCGATACACG 59.471 55.000 0.00 0.00 38.90 4.49
273 1528 0.529378 GGAAGGTGACCGATACACGT 59.471 55.000 0.00 0.00 40.78 4.49
274 1529 1.745087 GGAAGGTGACCGATACACGTA 59.255 52.381 0.00 0.00 40.78 3.57
275 1530 2.223433 GGAAGGTGACCGATACACGTAG 60.223 54.545 0.00 0.00 40.78 3.51
276 1531 1.386533 AGGTGACCGATACACGTAGG 58.613 55.000 0.00 0.00 40.78 3.18
277 1532 1.065199 AGGTGACCGATACACGTAGGA 60.065 52.381 0.00 0.00 40.78 2.94
278 1533 1.332997 GGTGACCGATACACGTAGGAG 59.667 57.143 0.00 0.00 40.78 3.69
279 1534 2.012673 GTGACCGATACACGTAGGAGT 58.987 52.381 0.00 0.00 40.78 3.85
280 1535 3.198068 GTGACCGATACACGTAGGAGTA 58.802 50.000 0.00 0.00 40.78 2.59
281 1536 3.247173 GTGACCGATACACGTAGGAGTAG 59.753 52.174 0.00 0.00 40.78 2.57
282 1537 3.118629 TGACCGATACACGTAGGAGTAGT 60.119 47.826 0.00 0.00 40.78 2.73
283 1538 3.201290 ACCGATACACGTAGGAGTAGTG 58.799 50.000 0.00 0.00 40.78 2.74
285 1540 3.002042 CCGATACACGTAGGAGTAGTGTG 59.998 52.174 10.27 0.00 46.94 3.82
286 1541 3.002042 CGATACACGTAGGAGTAGTGTGG 59.998 52.174 10.27 0.00 46.94 4.17
287 1542 2.283145 ACACGTAGGAGTAGTGTGGT 57.717 50.000 0.00 0.00 45.99 4.16
288 1543 2.157738 ACACGTAGGAGTAGTGTGGTC 58.842 52.381 0.00 0.00 45.99 4.02
289 1544 2.224719 ACACGTAGGAGTAGTGTGGTCT 60.225 50.000 0.00 0.00 45.99 3.85
290 1545 2.161808 CACGTAGGAGTAGTGTGGTCTG 59.838 54.545 0.00 0.00 0.00 3.51
291 1546 1.132643 CGTAGGAGTAGTGTGGTCTGC 59.867 57.143 0.00 0.00 0.00 4.26
292 1547 1.477295 GTAGGAGTAGTGTGGTCTGCC 59.523 57.143 0.00 0.00 0.00 4.85
293 1548 0.178932 AGGAGTAGTGTGGTCTGCCA 60.179 55.000 0.00 0.00 43.73 4.92
301 1556 3.542676 TGGTCTGCCACGAACCGT 61.543 61.111 0.00 0.00 40.46 4.83
302 1557 2.280592 GGTCTGCCACGAACCGTT 60.281 61.111 0.00 0.00 38.32 4.44
303 1558 2.315386 GGTCTGCCACGAACCGTTC 61.315 63.158 0.76 0.76 38.32 3.95
312 1567 3.975246 GAACCGTTCGGCAATGGA 58.025 55.556 11.32 0.00 40.84 3.41
313 1568 1.794222 GAACCGTTCGGCAATGGAG 59.206 57.895 11.32 0.00 40.84 3.86
314 1569 1.644786 GAACCGTTCGGCAATGGAGG 61.645 60.000 11.32 0.00 40.84 4.30
315 1570 2.119484 AACCGTTCGGCAATGGAGGA 62.119 55.000 11.32 0.00 40.84 3.71
316 1571 1.376683 CCGTTCGGCAATGGAGGAA 60.377 57.895 0.00 0.00 40.84 3.36
317 1572 0.748005 CCGTTCGGCAATGGAGGAAT 60.748 55.000 0.00 0.00 40.84 3.01
318 1573 0.657840 CGTTCGGCAATGGAGGAATC 59.342 55.000 0.00 0.00 0.00 2.52
319 1574 1.743772 CGTTCGGCAATGGAGGAATCT 60.744 52.381 0.00 0.00 0.00 2.40
320 1575 1.672881 GTTCGGCAATGGAGGAATCTG 59.327 52.381 0.00 0.00 0.00 2.90
321 1576 0.464373 TCGGCAATGGAGGAATCTGC 60.464 55.000 0.00 0.00 0.00 4.26
322 1577 0.465097 CGGCAATGGAGGAATCTGCT 60.465 55.000 0.00 0.00 33.49 4.24
323 1578 1.772836 GGCAATGGAGGAATCTGCTT 58.227 50.000 0.00 0.00 33.49 3.91
324 1579 1.407979 GGCAATGGAGGAATCTGCTTG 59.592 52.381 0.00 0.00 33.49 4.01
325 1580 1.202382 GCAATGGAGGAATCTGCTTGC 60.202 52.381 0.00 0.00 37.82 4.01
326 1581 2.376109 CAATGGAGGAATCTGCTTGCT 58.624 47.619 0.00 0.00 38.38 3.91
331 1586 2.832563 GAGGAATCTGCTTGCTCCTAC 58.167 52.381 1.83 0.00 44.24 3.18
332 1587 2.169352 GAGGAATCTGCTTGCTCCTACA 59.831 50.000 1.83 0.00 44.24 2.74
333 1588 2.093235 AGGAATCTGCTTGCTCCTACAC 60.093 50.000 0.12 0.00 36.51 2.90
334 1589 2.093235 GGAATCTGCTTGCTCCTACACT 60.093 50.000 0.00 0.00 0.00 3.55
335 1590 2.687700 ATCTGCTTGCTCCTACACTG 57.312 50.000 0.00 0.00 0.00 3.66
336 1591 0.036952 TCTGCTTGCTCCTACACTGC 60.037 55.000 0.00 0.00 0.00 4.40
337 1592 1.357258 CTGCTTGCTCCTACACTGCG 61.357 60.000 0.00 0.00 0.00 5.18
338 1593 1.374758 GCTTGCTCCTACACTGCGT 60.375 57.895 0.00 0.00 0.00 5.24
339 1594 1.355066 GCTTGCTCCTACACTGCGTC 61.355 60.000 0.00 0.00 0.00 5.19
340 1595 1.073216 CTTGCTCCTACACTGCGTCG 61.073 60.000 0.00 0.00 0.00 5.12
341 1596 2.881352 GCTCCTACACTGCGTCGC 60.881 66.667 11.10 11.10 0.00 5.19
342 1597 2.202623 CTCCTACACTGCGTCGCC 60.203 66.667 15.88 0.00 0.00 5.54
343 1598 4.111016 TCCTACACTGCGTCGCCG 62.111 66.667 15.88 11.36 37.07 6.46
345 1600 4.111016 CTACACTGCGTCGCCGGA 62.111 66.667 15.88 0.00 33.68 5.14
352 1607 4.814294 GCGTCGCCGGAGTGGAAT 62.814 66.667 5.05 0.00 42.00 3.01
353 1608 2.885644 CGTCGCCGGAGTGGAATG 60.886 66.667 5.05 0.00 42.00 2.67
354 1609 2.577059 GTCGCCGGAGTGGAATGA 59.423 61.111 5.05 0.00 42.00 2.57
355 1610 1.144057 GTCGCCGGAGTGGAATGAT 59.856 57.895 5.05 0.00 42.00 2.45
356 1611 0.462047 GTCGCCGGAGTGGAATGATT 60.462 55.000 5.05 0.00 42.00 2.57
357 1612 0.251916 TCGCCGGAGTGGAATGATTT 59.748 50.000 5.05 0.00 42.00 2.17
358 1613 1.094785 CGCCGGAGTGGAATGATTTT 58.905 50.000 5.05 0.00 42.00 1.82
359 1614 1.472480 CGCCGGAGTGGAATGATTTTT 59.528 47.619 5.05 0.00 42.00 1.94
360 1615 2.477863 CGCCGGAGTGGAATGATTTTTC 60.478 50.000 5.05 0.00 42.00 2.29
361 1616 2.755103 GCCGGAGTGGAATGATTTTTCT 59.245 45.455 5.05 0.00 42.00 2.52
362 1617 3.181496 GCCGGAGTGGAATGATTTTTCTC 60.181 47.826 5.05 0.00 42.00 2.87
363 1618 4.009675 CCGGAGTGGAATGATTTTTCTCA 58.990 43.478 0.00 0.00 42.00 3.27
364 1619 4.095483 CCGGAGTGGAATGATTTTTCTCAG 59.905 45.833 0.00 0.00 42.00 3.35
365 1620 4.095483 CGGAGTGGAATGATTTTTCTCAGG 59.905 45.833 0.00 0.00 0.00 3.86
366 1621 4.142293 GGAGTGGAATGATTTTTCTCAGGC 60.142 45.833 0.00 0.00 0.00 4.85
367 1622 3.766051 AGTGGAATGATTTTTCTCAGGCC 59.234 43.478 0.00 0.00 0.00 5.19
368 1623 3.766051 GTGGAATGATTTTTCTCAGGCCT 59.234 43.478 0.00 0.00 0.00 5.19
369 1624 4.019174 TGGAATGATTTTTCTCAGGCCTC 58.981 43.478 0.00 0.00 0.00 4.70
370 1625 3.382865 GGAATGATTTTTCTCAGGCCTCC 59.617 47.826 0.00 0.00 0.00 4.30
371 1626 4.276642 GAATGATTTTTCTCAGGCCTCCT 58.723 43.478 0.00 0.00 0.00 3.69
372 1627 5.440610 GAATGATTTTTCTCAGGCCTCCTA 58.559 41.667 0.00 0.00 29.64 2.94
373 1628 4.222124 TGATTTTTCTCAGGCCTCCTAC 57.778 45.455 0.00 0.00 29.64 3.18
374 1629 3.587061 TGATTTTTCTCAGGCCTCCTACA 59.413 43.478 0.00 0.00 29.64 2.74
375 1630 3.703001 TTTTTCTCAGGCCTCCTACAG 57.297 47.619 0.00 0.00 29.64 2.74
376 1631 0.905357 TTTCTCAGGCCTCCTACAGC 59.095 55.000 0.00 0.00 29.64 4.40
382 1637 3.402681 GCCTCCTACAGCCAGCCA 61.403 66.667 0.00 0.00 0.00 4.75
383 1638 2.906458 CCTCCTACAGCCAGCCAG 59.094 66.667 0.00 0.00 0.00 4.85
384 1639 1.992277 CCTCCTACAGCCAGCCAGT 60.992 63.158 0.00 0.00 0.00 4.00
385 1640 1.220206 CTCCTACAGCCAGCCAGTG 59.780 63.158 0.00 0.00 0.00 3.66
386 1641 2.437359 CCTACAGCCAGCCAGTGC 60.437 66.667 0.00 0.00 37.95 4.40
387 1642 2.816958 CTACAGCCAGCCAGTGCG 60.817 66.667 0.00 0.00 44.33 5.34
388 1643 4.393155 TACAGCCAGCCAGTGCGG 62.393 66.667 0.00 0.00 44.33 5.69
398 1653 4.742201 CAGTGCGGGGGACTCGTG 62.742 72.222 0.00 0.00 30.21 4.35
403 1658 4.760047 CGGGGGACTCGTGCCAAG 62.760 72.222 9.84 0.00 43.56 3.61
404 1659 4.410400 GGGGGACTCGTGCCAAGG 62.410 72.222 9.84 0.00 43.56 3.61
405 1660 3.637273 GGGGACTCGTGCCAAGGT 61.637 66.667 9.84 0.00 43.56 3.50
406 1661 2.047179 GGGACTCGTGCCAAGGTC 60.047 66.667 2.47 0.00 41.16 3.85
407 1662 2.432628 GGACTCGTGCCAAGGTCG 60.433 66.667 0.00 0.00 0.00 4.79
408 1663 2.649034 GACTCGTGCCAAGGTCGA 59.351 61.111 7.87 7.87 0.00 4.20
409 1664 1.733399 GACTCGTGCCAAGGTCGAC 60.733 63.158 7.13 7.13 0.00 4.20
410 1665 2.338620 CTCGTGCCAAGGTCGACA 59.661 61.111 18.91 0.00 0.00 4.35
411 1666 2.022129 CTCGTGCCAAGGTCGACAC 61.022 63.158 18.91 6.91 0.00 3.67
413 1668 2.028484 GTGCCAAGGTCGACACGA 59.972 61.111 18.91 0.00 0.00 4.35
414 1669 1.593209 GTGCCAAGGTCGACACGAA 60.593 57.895 18.91 0.00 37.72 3.85
415 1670 1.144276 TGCCAAGGTCGACACGAAA 59.856 52.632 18.91 0.00 37.72 3.46
416 1671 0.462225 TGCCAAGGTCGACACGAAAA 60.462 50.000 18.91 0.00 37.72 2.29
417 1672 0.234884 GCCAAGGTCGACACGAAAAG 59.765 55.000 18.91 0.00 37.72 2.27
418 1673 0.865769 CCAAGGTCGACACGAAAAGG 59.134 55.000 18.91 5.05 37.72 3.11
419 1674 0.865769 CAAGGTCGACACGAAAAGGG 59.134 55.000 18.91 0.00 37.72 3.95
420 1675 0.754472 AAGGTCGACACGAAAAGGGA 59.246 50.000 18.91 0.00 37.72 4.20
421 1676 0.317479 AGGTCGACACGAAAAGGGAG 59.683 55.000 18.91 0.00 37.72 4.30
422 1677 1.289800 GGTCGACACGAAAAGGGAGC 61.290 60.000 18.91 0.00 37.72 4.70
423 1678 0.319641 GTCGACACGAAAAGGGAGCT 60.320 55.000 11.55 0.00 37.72 4.09
424 1679 0.391597 TCGACACGAAAAGGGAGCTT 59.608 50.000 0.00 0.00 31.06 3.74
425 1680 1.614903 TCGACACGAAAAGGGAGCTTA 59.385 47.619 0.00 0.00 31.06 3.09
426 1681 2.036217 TCGACACGAAAAGGGAGCTTAA 59.964 45.455 0.00 0.00 31.06 1.85
427 1682 2.157085 CGACACGAAAAGGGAGCTTAAC 59.843 50.000 0.00 0.00 0.00 2.01
428 1683 3.400255 GACACGAAAAGGGAGCTTAACT 58.600 45.455 0.00 0.00 0.00 2.24
429 1684 3.813724 GACACGAAAAGGGAGCTTAACTT 59.186 43.478 0.00 0.00 0.00 2.66
430 1685 3.813724 ACACGAAAAGGGAGCTTAACTTC 59.186 43.478 0.00 0.00 0.00 3.01
431 1686 3.813166 CACGAAAAGGGAGCTTAACTTCA 59.187 43.478 0.00 0.00 0.00 3.02
432 1687 3.813724 ACGAAAAGGGAGCTTAACTTCAC 59.186 43.478 0.00 0.00 0.00 3.18
433 1688 4.065789 CGAAAAGGGAGCTTAACTTCACT 58.934 43.478 0.00 0.00 0.00 3.41
434 1689 4.152580 CGAAAAGGGAGCTTAACTTCACTC 59.847 45.833 0.00 0.00 0.00 3.51
435 1690 3.704800 AAGGGAGCTTAACTTCACTCC 57.295 47.619 0.00 0.00 46.61 3.85
438 1693 2.701107 GGAGCTTAACTTCACTCCACC 58.299 52.381 3.07 0.00 46.57 4.61
439 1694 2.615747 GGAGCTTAACTTCACTCCACCC 60.616 54.545 3.07 0.00 46.57 4.61
440 1695 2.038557 GAGCTTAACTTCACTCCACCCA 59.961 50.000 0.00 0.00 0.00 4.51
441 1696 2.039084 AGCTTAACTTCACTCCACCCAG 59.961 50.000 0.00 0.00 0.00 4.45
442 1697 2.427506 CTTAACTTCACTCCACCCAGC 58.572 52.381 0.00 0.00 0.00 4.85
443 1698 0.320374 TAACTTCACTCCACCCAGCG 59.680 55.000 0.00 0.00 0.00 5.18
444 1699 1.696097 AACTTCACTCCACCCAGCGT 61.696 55.000 0.00 0.00 0.00 5.07
445 1700 0.830444 ACTTCACTCCACCCAGCGTA 60.830 55.000 0.00 0.00 0.00 4.42
446 1701 0.108615 CTTCACTCCACCCAGCGTAG 60.109 60.000 0.00 0.00 0.00 3.51
459 1714 2.433664 CGTAGCCAACGTCCCCAC 60.434 66.667 0.00 0.00 46.72 4.61
460 1715 2.046604 GTAGCCAACGTCCCCACC 60.047 66.667 0.00 0.00 0.00 4.61
461 1716 3.697747 TAGCCAACGTCCCCACCG 61.698 66.667 0.00 0.00 0.00 4.94
464 1719 3.943691 CCAACGTCCCCACCGGAA 61.944 66.667 9.46 0.00 44.47 4.30
465 1720 2.358247 CAACGTCCCCACCGGAAG 60.358 66.667 9.46 0.00 44.47 3.46
466 1721 2.524887 AACGTCCCCACCGGAAGA 60.525 61.111 9.46 0.00 44.47 2.87
467 1722 2.142104 AACGTCCCCACCGGAAGAA 61.142 57.895 9.46 0.00 44.47 2.52
468 1723 2.108278 AACGTCCCCACCGGAAGAAG 62.108 60.000 9.46 3.78 44.47 2.85
469 1724 2.046217 GTCCCCACCGGAAGAAGC 60.046 66.667 9.46 0.00 44.47 3.86
470 1725 3.702048 TCCCCACCGGAAGAAGCG 61.702 66.667 9.46 0.00 37.88 4.68
471 1726 4.778143 CCCCACCGGAAGAAGCGG 62.778 72.222 9.46 0.00 0.00 5.52
476 1731 4.137872 CCGGAAGAAGCGGCCGTA 62.138 66.667 28.70 0.00 43.35 4.02
478 1733 1.738830 CGGAAGAAGCGGCCGTAAA 60.739 57.895 28.70 0.00 40.17 2.01
481 1736 2.282407 GGAAGAAGCGGCCGTAAATTA 58.718 47.619 28.70 0.00 0.00 1.40
484 1739 2.277084 AGAAGCGGCCGTAAATTACAG 58.723 47.619 28.70 0.00 0.00 2.74
485 1740 2.093869 AGAAGCGGCCGTAAATTACAGA 60.094 45.455 28.70 0.00 0.00 3.41
486 1741 2.614829 AGCGGCCGTAAATTACAGAT 57.385 45.000 28.70 0.00 0.00 2.90
487 1742 2.914059 AGCGGCCGTAAATTACAGATT 58.086 42.857 28.70 0.00 0.00 2.40
490 1745 4.033019 GCGGCCGTAAATTACAGATTTTC 58.967 43.478 28.70 0.00 0.00 2.29
764 2123 3.547737 TTCCTCCCCCTCCACCCA 61.548 66.667 0.00 0.00 0.00 4.51
1035 2397 3.637273 AGCCCCGACAGGTTCACC 61.637 66.667 0.00 0.00 35.12 4.02
1299 2661 3.431725 GTGAAGGCTTTCCGGGCG 61.432 66.667 6.06 0.00 37.47 6.13
1338 2700 1.609635 TTCTGCCGAATAGGGTCGCA 61.610 55.000 0.00 0.00 39.74 5.10
1410 2772 1.174712 AGCAAGTGCATGGTTTCGCT 61.175 50.000 6.00 0.00 45.16 4.93
1413 2775 0.593128 AAGTGCATGGTTTCGCTGTC 59.407 50.000 0.00 0.00 0.00 3.51
1435 2797 0.474660 GATGGGGCTCTATGGGGAGT 60.475 60.000 0.00 0.00 35.89 3.85
1440 2802 1.501582 GGCTCTATGGGGAGTTGTCT 58.498 55.000 0.00 0.00 35.89 3.41
1475 2837 6.145048 GCTTTGATTGATATGTATGCAAAGGC 59.855 38.462 0.57 0.00 40.38 4.35
1514 2876 0.447801 AGGCGTGTTTTCGATGATGC 59.552 50.000 0.00 0.00 0.00 3.91
1557 2919 3.054434 TCTCATGGGGTTCAATGGTACTG 60.054 47.826 0.00 0.00 0.00 2.74
1584 2946 1.493022 GGCCTTCATGGTATGGGTACA 59.507 52.381 0.00 0.00 38.35 2.90
1608 2970 2.895404 AGCAGTTGCCTTGTTTGATCAT 59.105 40.909 0.00 0.00 43.38 2.45
1659 3021 0.685097 TAGTTGGTCTGGGTGTGCTC 59.315 55.000 0.00 0.00 0.00 4.26
1662 3024 0.764369 TTGGTCTGGGTGTGCTCTCT 60.764 55.000 0.00 0.00 0.00 3.10
1716 3078 5.367060 GGGACTTGAGATATACAACTCCCTT 59.633 44.000 20.13 0.00 42.08 3.95
1719 3081 7.259088 ACTTGAGATATACAACTCCCTTGTT 57.741 36.000 0.00 0.00 40.45 2.83
1771 3133 2.337583 TGTCTGCTTGCGTAGTTGATC 58.662 47.619 0.00 0.00 0.00 2.92
1785 3147 0.539986 TTGATCTACTGGGGCGTTCC 59.460 55.000 0.00 0.00 0.00 3.62
1794 3156 2.822701 GGGCGTTCCGGGTTGATC 60.823 66.667 0.00 0.00 0.00 2.92
1839 3201 2.234908 GTCAATGAGTGTAGAGCCAGGT 59.765 50.000 0.00 0.00 0.00 4.00
2028 3390 5.010012 ACAAGTGAGGGCAAAGATTAAACAG 59.990 40.000 0.00 0.00 0.00 3.16
2034 3396 3.366985 GGGCAAAGATTAAACAGGGAACG 60.367 47.826 0.00 0.00 0.00 3.95
2084 3446 3.855689 AAATGCAGCAACATAGTGACC 57.144 42.857 0.00 0.00 0.00 4.02
2089 3451 2.353889 GCAGCAACATAGTGACCATCAG 59.646 50.000 0.00 0.00 0.00 2.90
2127 3489 0.896923 TTGTTCATGGCCCATTCAGC 59.103 50.000 0.00 0.00 0.00 4.26
2134 3496 1.976474 GGCCCATTCAGCGGTTCAA 60.976 57.895 0.00 0.00 0.00 2.69
2146 3508 1.608283 GCGGTTCAAAGCTCTACCAGT 60.608 52.381 0.00 0.00 0.00 4.00
2182 3544 1.466856 TGCTCTGGAATCATTGGCAC 58.533 50.000 0.00 0.00 0.00 5.01
2203 3565 3.327757 ACTGTACAGGACCACATCAACAT 59.672 43.478 26.12 0.00 0.00 2.71
2212 3574 7.615365 ACAGGACCACATCAACATAAATTGTAT 59.385 33.333 0.00 0.00 37.68 2.29
2230 3592 8.986477 AATTGTATCATTGGCAGTTAAAAGAC 57.014 30.769 0.00 0.00 0.00 3.01
2287 3649 2.980568 TGTTCAGGCGGTGGTTATTAG 58.019 47.619 0.00 0.00 0.00 1.73
2318 3680 2.639286 CCTCTGCAACAACGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
2534 3898 5.987098 ACTGAGTTGCTAGATGAATGATGT 58.013 37.500 0.00 0.00 0.00 3.06
2557 3921 3.986996 TGACAGCAGAATCAAGGATGA 57.013 42.857 0.00 0.00 40.57 2.92
2651 4015 5.709164 CACTGACCAGAAAAGATCCAGAAAT 59.291 40.000 3.76 0.00 0.00 2.17
2679 4043 8.964476 TTGGAGAACATATAGCTTTAGAAAGG 57.036 34.615 0.00 0.00 36.53 3.11
2682 4046 8.211629 GGAGAACATATAGCTTTAGAAAGGGAA 58.788 37.037 0.00 0.00 36.53 3.97
2683 4047 9.267084 GAGAACATATAGCTTTAGAAAGGGAAG 57.733 37.037 0.00 0.00 36.53 3.46
2687 4051 9.785982 ACATATAGCTTTAGAAAGGGAAGATTC 57.214 33.333 0.00 0.00 36.53 2.52
2711 4075 6.883756 TCAAGAATGCTCAAATGGTGTGTATA 59.116 34.615 0.00 0.00 0.00 1.47
2736 4100 2.703416 TCGACTGAAATGAGCTTGCAT 58.297 42.857 0.00 0.00 0.00 3.96
2750 4114 5.639506 TGAGCTTGCATTAGTACTCACTTTC 59.360 40.000 0.00 0.00 36.14 2.62
2769 4133 3.405093 TATGCAGCTGGGGCCGAAG 62.405 63.158 17.12 0.00 39.73 3.79
2777 4141 1.993369 CTGGGGCCGAAGCGAAAATC 61.993 60.000 0.00 0.00 41.24 2.17
2812 4176 3.699538 AGTTTGGAGGTCTTTGTTTGTCC 59.300 43.478 0.00 0.00 0.00 4.02
2830 4194 7.068103 TGTTTGTCCACAGAACATGTAATTTCT 59.932 33.333 0.00 0.00 41.41 2.52
2850 4214 5.428496 TCTCAGTTTCTCTTGCACATTTG 57.572 39.130 0.00 0.00 0.00 2.32
2898 4262 7.145985 TGACAACACAAGACATTACTCTCTAC 58.854 38.462 0.00 0.00 0.00 2.59
2903 4267 6.207025 ACACAAGACATTACTCTCTACGAACT 59.793 38.462 0.00 0.00 0.00 3.01
2921 4308 1.051812 CTCATCTTGGGACCGGCTAT 58.948 55.000 0.00 0.00 0.00 2.97
2922 4309 0.758734 TCATCTTGGGACCGGCTATG 59.241 55.000 0.00 0.00 0.00 2.23
2934 4321 3.352648 ACCGGCTATGCAATTGTAAGTT 58.647 40.909 0.00 0.00 0.00 2.66
2965 4352 3.627395 ACATCATAGCCGGAGTTTGAA 57.373 42.857 5.05 0.00 0.00 2.69
3002 4389 8.611051 AGATTTATAGTGGTGGAACTCTTAGT 57.389 34.615 0.00 0.00 36.74 2.24
3003 4390 8.478877 AGATTTATAGTGGTGGAACTCTTAGTG 58.521 37.037 0.00 0.00 36.74 2.74
3038 4427 1.728971 GAGAACAGTCTGCCAATGACG 59.271 52.381 0.00 0.00 39.24 4.35
3050 4439 2.550606 GCCAATGACGAGTGTTTTGGTA 59.449 45.455 0.00 0.00 40.80 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.100943 AGTTCCTCGAAAATTACTAGTCGC 58.899 41.667 0.00 0.00 33.58 5.19
1 2 8.853469 ATTAGTTCCTCGAAAATTACTAGTCG 57.147 34.615 0.00 0.00 34.85 4.18
2 3 9.798994 TGATTAGTTCCTCGAAAATTACTAGTC 57.201 33.333 0.00 0.00 0.00 2.59
6 7 8.936864 CACTTGATTAGTTCCTCGAAAATTACT 58.063 33.333 0.00 0.00 33.85 2.24
7 8 8.932791 TCACTTGATTAGTTCCTCGAAAATTAC 58.067 33.333 0.00 0.00 33.85 1.89
8 9 9.496873 TTCACTTGATTAGTTCCTCGAAAATTA 57.503 29.630 0.00 0.00 33.85 1.40
9 10 7.979444 TCACTTGATTAGTTCCTCGAAAATT 57.021 32.000 0.00 0.00 33.85 1.82
10 11 7.979444 TTCACTTGATTAGTTCCTCGAAAAT 57.021 32.000 0.00 0.00 33.85 1.82
11 12 7.573096 GCATTCACTTGATTAGTTCCTCGAAAA 60.573 37.037 0.00 0.00 33.85 2.29
12 13 6.128282 GCATTCACTTGATTAGTTCCTCGAAA 60.128 38.462 0.00 0.00 33.85 3.46
13 14 5.351465 GCATTCACTTGATTAGTTCCTCGAA 59.649 40.000 0.00 0.00 33.85 3.71
14 15 4.870426 GCATTCACTTGATTAGTTCCTCGA 59.130 41.667 0.00 0.00 33.85 4.04
15 16 4.631377 TGCATTCACTTGATTAGTTCCTCG 59.369 41.667 0.00 0.00 33.85 4.63
16 17 5.877012 TCTGCATTCACTTGATTAGTTCCTC 59.123 40.000 0.00 0.00 33.85 3.71
17 18 5.645497 GTCTGCATTCACTTGATTAGTTCCT 59.355 40.000 0.00 0.00 33.85 3.36
18 19 5.446473 CGTCTGCATTCACTTGATTAGTTCC 60.446 44.000 0.00 0.00 33.85 3.62
19 20 5.446473 CCGTCTGCATTCACTTGATTAGTTC 60.446 44.000 0.00 0.00 33.85 3.01
20 21 4.393062 CCGTCTGCATTCACTTGATTAGTT 59.607 41.667 0.00 0.00 33.85 2.24
21 22 3.935203 CCGTCTGCATTCACTTGATTAGT 59.065 43.478 0.00 0.00 37.68 2.24
22 23 4.183865 TCCGTCTGCATTCACTTGATTAG 58.816 43.478 0.00 0.00 0.00 1.73
23 24 4.183865 CTCCGTCTGCATTCACTTGATTA 58.816 43.478 0.00 0.00 0.00 1.75
24 25 3.005554 CTCCGTCTGCATTCACTTGATT 58.994 45.455 0.00 0.00 0.00 2.57
25 26 2.625737 CTCCGTCTGCATTCACTTGAT 58.374 47.619 0.00 0.00 0.00 2.57
26 27 1.338105 CCTCCGTCTGCATTCACTTGA 60.338 52.381 0.00 0.00 0.00 3.02
27 28 1.081892 CCTCCGTCTGCATTCACTTG 58.918 55.000 0.00 0.00 0.00 3.16
28 29 0.674895 GCCTCCGTCTGCATTCACTT 60.675 55.000 0.00 0.00 0.00 3.16
29 30 1.078848 GCCTCCGTCTGCATTCACT 60.079 57.895 0.00 0.00 0.00 3.41
30 31 2.109126 GGCCTCCGTCTGCATTCAC 61.109 63.158 0.00 0.00 0.00 3.18
31 32 2.268920 GGCCTCCGTCTGCATTCA 59.731 61.111 0.00 0.00 0.00 2.57
32 33 2.892425 CGGCCTCCGTCTGCATTC 60.892 66.667 0.00 0.00 42.73 2.67
42 43 7.012989 ACTGTTATTTGATTTATTACGGCCTCC 59.987 37.037 0.00 0.00 0.00 4.30
43 44 7.855904 CACTGTTATTTGATTTATTACGGCCTC 59.144 37.037 0.00 0.00 0.00 4.70
44 45 7.681065 GCACTGTTATTTGATTTATTACGGCCT 60.681 37.037 0.00 0.00 0.00 5.19
45 46 6.416750 GCACTGTTATTTGATTTATTACGGCC 59.583 38.462 0.00 0.00 0.00 6.13
46 47 7.193595 AGCACTGTTATTTGATTTATTACGGC 58.806 34.615 0.00 0.00 0.00 5.68
47 48 9.009327 CAAGCACTGTTATTTGATTTATTACGG 57.991 33.333 0.00 0.00 0.00 4.02
48 49 9.554724 ACAAGCACTGTTATTTGATTTATTACG 57.445 29.630 0.00 0.00 32.99 3.18
62 63 3.310227 CCACACGTTAACAAGCACTGTTA 59.690 43.478 6.39 7.19 46.75 2.41
64 65 1.668751 CCACACGTTAACAAGCACTGT 59.331 47.619 6.39 0.00 41.27 3.55
65 66 1.937223 TCCACACGTTAACAAGCACTG 59.063 47.619 6.39 0.00 0.00 3.66
66 67 2.319136 TCCACACGTTAACAAGCACT 57.681 45.000 6.39 0.00 0.00 4.40
67 68 3.422603 CGTATCCACACGTTAACAAGCAC 60.423 47.826 6.39 0.00 37.16 4.40
68 69 2.732500 CGTATCCACACGTTAACAAGCA 59.267 45.455 6.39 0.00 37.16 3.91
69 70 2.988493 TCGTATCCACACGTTAACAAGC 59.012 45.455 6.39 0.00 42.51 4.01
70 71 4.478699 TCTCGTATCCACACGTTAACAAG 58.521 43.478 6.39 0.00 42.51 3.16
71 72 4.502171 TCTCGTATCCACACGTTAACAA 57.498 40.909 6.39 0.00 42.51 2.83
72 73 4.707030 ATCTCGTATCCACACGTTAACA 57.293 40.909 6.39 0.00 42.51 2.41
73 74 5.680229 CACTATCTCGTATCCACACGTTAAC 59.320 44.000 0.00 0.00 42.51 2.01
74 75 5.731406 GCACTATCTCGTATCCACACGTTAA 60.731 44.000 0.00 0.00 42.51 2.01
75 76 4.260907 GCACTATCTCGTATCCACACGTTA 60.261 45.833 0.00 0.00 42.51 3.18
76 77 3.488721 GCACTATCTCGTATCCACACGTT 60.489 47.826 0.00 0.00 42.51 3.99
77 78 2.033049 GCACTATCTCGTATCCACACGT 59.967 50.000 0.00 0.00 42.51 4.49
78 79 2.651701 GCACTATCTCGTATCCACACG 58.348 52.381 0.00 0.00 43.28 4.49
79 80 2.604855 CCGCACTATCTCGTATCCACAC 60.605 54.545 0.00 0.00 0.00 3.82
80 81 1.607148 CCGCACTATCTCGTATCCACA 59.393 52.381 0.00 0.00 0.00 4.17
81 82 1.068472 CCCGCACTATCTCGTATCCAC 60.068 57.143 0.00 0.00 0.00 4.02
82 83 1.244816 CCCGCACTATCTCGTATCCA 58.755 55.000 0.00 0.00 0.00 3.41
83 84 0.526662 CCCCGCACTATCTCGTATCC 59.473 60.000 0.00 0.00 0.00 2.59
84 85 0.109226 GCCCCGCACTATCTCGTATC 60.109 60.000 0.00 0.00 0.00 2.24
85 86 0.826256 TGCCCCGCACTATCTCGTAT 60.826 55.000 0.00 0.00 31.71 3.06
86 87 1.452953 CTGCCCCGCACTATCTCGTA 61.453 60.000 0.00 0.00 33.79 3.43
115 116 4.881920 ACTTTTTCCATCAAAATGTCCGG 58.118 39.130 0.00 0.00 37.66 5.14
140 1395 4.962155 AGTTCCAGGACAGTAAGTTTCAG 58.038 43.478 0.00 0.00 0.00 3.02
141 1396 5.367945 AAGTTCCAGGACAGTAAGTTTCA 57.632 39.130 0.00 0.00 0.00 2.69
145 1400 3.118038 TGCAAAGTTCCAGGACAGTAAGT 60.118 43.478 0.00 0.00 0.00 2.24
146 1401 3.476552 TGCAAAGTTCCAGGACAGTAAG 58.523 45.455 0.00 0.00 0.00 2.34
147 1402 3.569194 TGCAAAGTTCCAGGACAGTAA 57.431 42.857 0.00 0.00 0.00 2.24
149 1404 2.664402 ATGCAAAGTTCCAGGACAGT 57.336 45.000 0.00 0.00 0.00 3.55
150 1405 3.679389 ACTATGCAAAGTTCCAGGACAG 58.321 45.455 0.00 0.00 0.00 3.51
151 1406 3.788227 ACTATGCAAAGTTCCAGGACA 57.212 42.857 0.00 0.00 0.00 4.02
152 1407 4.686839 GAACTATGCAAAGTTCCAGGAC 57.313 45.455 5.61 0.00 46.36 3.85
159 1414 2.226437 CAGCGGTGAACTATGCAAAGTT 59.774 45.455 9.50 0.00 42.36 2.66
161 1416 1.466360 GCAGCGGTGAACTATGCAAAG 60.466 52.381 20.69 0.00 36.88 2.77
162 1417 0.521291 GCAGCGGTGAACTATGCAAA 59.479 50.000 20.69 0.00 36.88 3.68
163 1418 1.305219 GGCAGCGGTGAACTATGCAA 61.305 55.000 20.69 0.00 38.63 4.08
165 1420 1.432270 GAGGCAGCGGTGAACTATGC 61.432 60.000 20.69 0.00 36.16 3.14
166 1421 0.811616 GGAGGCAGCGGTGAACTATG 60.812 60.000 20.69 0.00 0.00 2.23
169 1424 4.379243 CGGAGGCAGCGGTGAACT 62.379 66.667 20.69 15.34 0.00 3.01
182 1437 1.592669 GTGATGATGGACGCCGGAG 60.593 63.158 5.05 3.72 0.00 4.63
183 1438 1.685355 ATGTGATGATGGACGCCGGA 61.685 55.000 5.05 0.00 0.00 5.14
184 1439 1.224069 GATGTGATGATGGACGCCGG 61.224 60.000 0.00 0.00 0.00 6.13
185 1440 0.530431 TGATGTGATGATGGACGCCG 60.530 55.000 0.00 0.00 0.00 6.46
186 1441 0.940126 GTGATGTGATGATGGACGCC 59.060 55.000 0.00 0.00 0.00 5.68
187 1442 1.945387 AGTGATGTGATGATGGACGC 58.055 50.000 0.00 0.00 0.00 5.19
188 1443 2.031314 GCAAGTGATGTGATGATGGACG 59.969 50.000 0.00 0.00 0.00 4.79
189 1444 3.011818 TGCAAGTGATGTGATGATGGAC 58.988 45.455 0.00 0.00 0.00 4.02
190 1445 3.054948 TCTGCAAGTGATGTGATGATGGA 60.055 43.478 0.00 0.00 33.76 3.41
191 1446 3.275999 TCTGCAAGTGATGTGATGATGG 58.724 45.455 0.00 0.00 33.76 3.51
192 1447 3.939592 ACTCTGCAAGTGATGTGATGATG 59.060 43.478 1.44 0.00 36.65 3.07
193 1448 4.217836 ACTCTGCAAGTGATGTGATGAT 57.782 40.909 1.44 0.00 36.65 2.45
194 1449 3.690475 ACTCTGCAAGTGATGTGATGA 57.310 42.857 1.44 0.00 36.65 2.92
195 1450 4.510711 GGATACTCTGCAAGTGATGTGATG 59.489 45.833 10.59 0.00 39.11 3.07
196 1451 4.162888 TGGATACTCTGCAAGTGATGTGAT 59.837 41.667 10.59 0.00 39.11 3.06
197 1452 3.515104 TGGATACTCTGCAAGTGATGTGA 59.485 43.478 10.59 0.00 39.11 3.58
198 1453 3.865446 TGGATACTCTGCAAGTGATGTG 58.135 45.455 10.59 0.00 39.11 3.21
199 1454 4.408270 AGATGGATACTCTGCAAGTGATGT 59.592 41.667 10.59 0.00 39.11 3.06
200 1455 4.958509 AGATGGATACTCTGCAAGTGATG 58.041 43.478 10.59 0.00 39.11 3.07
201 1456 4.652881 TGAGATGGATACTCTGCAAGTGAT 59.347 41.667 10.59 2.91 39.11 3.06
202 1457 4.026052 TGAGATGGATACTCTGCAAGTGA 58.974 43.478 10.59 0.00 39.11 3.41
203 1458 4.370049 CTGAGATGGATACTCTGCAAGTG 58.630 47.826 10.59 0.00 39.11 3.16
204 1459 3.387374 CCTGAGATGGATACTCTGCAAGT 59.613 47.826 6.74 6.74 42.33 3.16
205 1460 3.640498 TCCTGAGATGGATACTCTGCAAG 59.360 47.826 0.00 0.00 35.66 4.01
206 1461 3.646534 TCCTGAGATGGATACTCTGCAA 58.353 45.455 0.00 0.00 35.66 4.08
207 1462 3.319031 TCCTGAGATGGATACTCTGCA 57.681 47.619 0.00 0.00 35.66 4.41
208 1463 4.191033 CATCCTGAGATGGATACTCTGC 57.809 50.000 0.00 0.00 44.38 4.26
209 1464 6.608539 ATTCATCCTGAGATGGATACTCTG 57.391 41.667 3.39 0.00 45.43 3.35
219 1474 3.428725 GCGCTCGATATTCATCCTGAGAT 60.429 47.826 0.00 0.00 0.00 2.75
220 1475 2.095008 GCGCTCGATATTCATCCTGAGA 60.095 50.000 0.00 0.00 0.00 3.27
221 1476 2.257894 GCGCTCGATATTCATCCTGAG 58.742 52.381 0.00 0.00 0.00 3.35
222 1477 1.067565 GGCGCTCGATATTCATCCTGA 60.068 52.381 7.64 0.00 0.00 3.86
223 1478 1.354040 GGCGCTCGATATTCATCCTG 58.646 55.000 7.64 0.00 0.00 3.86
224 1479 0.109086 CGGCGCTCGATATTCATCCT 60.109 55.000 7.64 0.00 42.43 3.24
225 1480 0.388649 ACGGCGCTCGATATTCATCC 60.389 55.000 22.10 0.00 42.43 3.51
226 1481 1.912110 GTACGGCGCTCGATATTCATC 59.088 52.381 22.10 0.00 42.43 2.92
227 1482 1.728179 CGTACGGCGCTCGATATTCAT 60.728 52.381 22.10 3.52 42.43 2.57
228 1483 0.385098 CGTACGGCGCTCGATATTCA 60.385 55.000 22.10 0.98 42.43 2.57
229 1484 0.385223 ACGTACGGCGCTCGATATTC 60.385 55.000 25.50 8.33 46.11 1.75
230 1485 0.659417 CACGTACGGCGCTCGATATT 60.659 55.000 25.50 5.11 46.11 1.28
231 1486 1.082300 CACGTACGGCGCTCGATAT 60.082 57.895 25.50 5.42 46.11 1.63
232 1487 2.325511 CACGTACGGCGCTCGATA 59.674 61.111 25.50 9.82 46.11 2.92
233 1488 4.547905 CCACGTACGGCGCTCGAT 62.548 66.667 25.50 10.64 46.11 3.59
236 1491 4.712425 ACACCACGTACGGCGCTC 62.712 66.667 21.06 0.00 46.11 5.03
240 1495 2.025418 CTTCCACACCACGTACGGC 61.025 63.158 21.06 0.00 0.00 5.68
241 1496 1.373748 CCTTCCACACCACGTACGG 60.374 63.158 21.06 8.46 0.00 4.02
242 1497 0.942410 CACCTTCCACACCACGTACG 60.942 60.000 15.01 15.01 0.00 3.67
243 1498 0.390124 TCACCTTCCACACCACGTAC 59.610 55.000 0.00 0.00 0.00 3.67
244 1499 0.390124 GTCACCTTCCACACCACGTA 59.610 55.000 0.00 0.00 0.00 3.57
245 1500 1.145377 GTCACCTTCCACACCACGT 59.855 57.895 0.00 0.00 0.00 4.49
246 1501 1.597027 GGTCACCTTCCACACCACG 60.597 63.158 0.00 0.00 0.00 4.94
247 1502 1.597027 CGGTCACCTTCCACACCAC 60.597 63.158 0.00 0.00 0.00 4.16
248 1503 1.125093 ATCGGTCACCTTCCACACCA 61.125 55.000 0.00 0.00 0.00 4.17
249 1504 0.899720 TATCGGTCACCTTCCACACC 59.100 55.000 0.00 0.00 0.00 4.16
250 1505 1.274167 TGTATCGGTCACCTTCCACAC 59.726 52.381 0.00 0.00 0.00 3.82
251 1506 1.274167 GTGTATCGGTCACCTTCCACA 59.726 52.381 0.00 0.00 0.00 4.17
252 1507 1.734707 CGTGTATCGGTCACCTTCCAC 60.735 57.143 0.00 0.00 35.71 4.02
253 1508 0.528924 CGTGTATCGGTCACCTTCCA 59.471 55.000 0.00 0.00 35.71 3.53
254 1509 0.529378 ACGTGTATCGGTCACCTTCC 59.471 55.000 0.00 0.00 44.69 3.46
255 1510 2.223433 CCTACGTGTATCGGTCACCTTC 60.223 54.545 0.00 0.00 44.69 3.46
256 1511 1.747355 CCTACGTGTATCGGTCACCTT 59.253 52.381 0.00 0.00 44.69 3.50
257 1512 1.065199 TCCTACGTGTATCGGTCACCT 60.065 52.381 0.00 0.00 44.69 4.00
258 1513 1.332997 CTCCTACGTGTATCGGTCACC 59.667 57.143 0.00 0.00 44.69 4.02
259 1514 2.012673 ACTCCTACGTGTATCGGTCAC 58.987 52.381 0.00 0.00 44.69 3.67
260 1515 2.408271 ACTCCTACGTGTATCGGTCA 57.592 50.000 0.00 0.00 44.69 4.02
261 1516 3.247173 CACTACTCCTACGTGTATCGGTC 59.753 52.174 0.00 0.00 44.69 4.79
262 1517 3.201290 CACTACTCCTACGTGTATCGGT 58.799 50.000 0.00 0.00 44.69 4.69
263 1518 3.002042 CACACTACTCCTACGTGTATCGG 59.998 52.174 0.00 0.00 44.69 4.18
264 1519 3.002042 CCACACTACTCCTACGTGTATCG 59.998 52.174 0.00 0.00 39.66 2.92
265 1520 3.944015 ACCACACTACTCCTACGTGTATC 59.056 47.826 0.00 0.00 39.66 2.24
266 1521 3.944015 GACCACACTACTCCTACGTGTAT 59.056 47.826 0.00 0.00 39.66 2.29
267 1522 3.008375 AGACCACACTACTCCTACGTGTA 59.992 47.826 0.00 0.00 39.66 2.90
268 1523 2.157738 GACCACACTACTCCTACGTGT 58.842 52.381 0.00 0.00 42.14 4.49
269 1524 2.161808 CAGACCACACTACTCCTACGTG 59.838 54.545 0.00 0.00 34.92 4.49
270 1525 2.434428 CAGACCACACTACTCCTACGT 58.566 52.381 0.00 0.00 0.00 3.57
271 1526 1.132643 GCAGACCACACTACTCCTACG 59.867 57.143 0.00 0.00 0.00 3.51
272 1527 1.477295 GGCAGACCACACTACTCCTAC 59.523 57.143 0.00 0.00 35.26 3.18
273 1528 1.076513 TGGCAGACCACACTACTCCTA 59.923 52.381 0.00 0.00 42.67 2.94
274 1529 0.178932 TGGCAGACCACACTACTCCT 60.179 55.000 0.00 0.00 42.67 3.69
275 1530 2.362242 TGGCAGACCACACTACTCC 58.638 57.895 0.00 0.00 42.67 3.85
284 1539 2.981977 GAACGGTTCGTGGCAGACCA 62.982 60.000 4.94 0.00 46.51 4.02
285 1540 2.280592 AACGGTTCGTGGCAGACC 60.281 61.111 4.90 4.90 39.99 3.85
286 1541 3.241177 GAACGGTTCGTGGCAGAC 58.759 61.111 4.94 0.00 39.99 3.51
295 1550 1.644786 CCTCCATTGCCGAACGGTTC 61.645 60.000 14.63 10.83 37.65 3.62
296 1551 1.674322 CCTCCATTGCCGAACGGTT 60.674 57.895 14.63 0.00 37.65 4.44
297 1552 2.046314 CCTCCATTGCCGAACGGT 60.046 61.111 14.63 0.00 37.65 4.83
298 1553 0.748005 ATTCCTCCATTGCCGAACGG 60.748 55.000 9.00 9.00 38.57 4.44
299 1554 0.657840 GATTCCTCCATTGCCGAACG 59.342 55.000 0.00 0.00 0.00 3.95
300 1555 1.672881 CAGATTCCTCCATTGCCGAAC 59.327 52.381 0.00 0.00 0.00 3.95
301 1556 2.018644 GCAGATTCCTCCATTGCCGAA 61.019 52.381 0.00 0.00 0.00 4.30
302 1557 0.464373 GCAGATTCCTCCATTGCCGA 60.464 55.000 0.00 0.00 0.00 5.54
303 1558 0.465097 AGCAGATTCCTCCATTGCCG 60.465 55.000 0.00 0.00 35.44 5.69
304 1559 1.407979 CAAGCAGATTCCTCCATTGCC 59.592 52.381 0.00 0.00 35.44 4.52
305 1560 1.202382 GCAAGCAGATTCCTCCATTGC 60.202 52.381 0.00 0.00 35.35 3.56
306 1561 2.358267 GAGCAAGCAGATTCCTCCATTG 59.642 50.000 0.00 0.00 0.00 2.82
307 1562 2.652590 GAGCAAGCAGATTCCTCCATT 58.347 47.619 0.00 0.00 0.00 3.16
308 1563 1.133853 GGAGCAAGCAGATTCCTCCAT 60.134 52.381 3.26 0.00 41.31 3.41
309 1564 0.254178 GGAGCAAGCAGATTCCTCCA 59.746 55.000 3.26 0.00 41.31 3.86
310 1565 0.545646 AGGAGCAAGCAGATTCCTCC 59.454 55.000 0.00 0.00 41.84 4.30
311 1566 2.169352 TGTAGGAGCAAGCAGATTCCTC 59.831 50.000 4.11 0.00 40.43 3.71
312 1567 2.093235 GTGTAGGAGCAAGCAGATTCCT 60.093 50.000 5.96 5.96 42.50 3.36
313 1568 2.093235 AGTGTAGGAGCAAGCAGATTCC 60.093 50.000 0.00 0.00 0.00 3.01
314 1569 2.935201 CAGTGTAGGAGCAAGCAGATTC 59.065 50.000 0.00 0.00 0.00 2.52
315 1570 2.938756 GCAGTGTAGGAGCAAGCAGATT 60.939 50.000 0.00 0.00 0.00 2.40
316 1571 1.406614 GCAGTGTAGGAGCAAGCAGAT 60.407 52.381 0.00 0.00 0.00 2.90
317 1572 0.036952 GCAGTGTAGGAGCAAGCAGA 60.037 55.000 0.00 0.00 0.00 4.26
318 1573 1.357258 CGCAGTGTAGGAGCAAGCAG 61.357 60.000 0.00 0.00 0.00 4.24
319 1574 1.374631 CGCAGTGTAGGAGCAAGCA 60.375 57.895 0.00 0.00 0.00 3.91
320 1575 1.374758 ACGCAGTGTAGGAGCAAGC 60.375 57.895 0.00 0.00 42.51 4.01
321 1576 4.996976 ACGCAGTGTAGGAGCAAG 57.003 55.556 0.00 0.00 42.51 4.01
337 1592 0.462047 AATCATTCCACTCCGGCGAC 60.462 55.000 9.30 0.00 33.14 5.19
338 1593 0.251916 AAATCATTCCACTCCGGCGA 59.748 50.000 9.30 0.00 33.14 5.54
339 1594 1.094785 AAAATCATTCCACTCCGGCG 58.905 50.000 0.00 0.00 33.14 6.46
340 1595 2.755103 AGAAAAATCATTCCACTCCGGC 59.245 45.455 0.00 0.00 33.14 6.13
341 1596 4.009675 TGAGAAAAATCATTCCACTCCGG 58.990 43.478 0.00 0.00 0.00 5.14
342 1597 4.095483 CCTGAGAAAAATCATTCCACTCCG 59.905 45.833 0.00 0.00 0.00 4.63
343 1598 4.142293 GCCTGAGAAAAATCATTCCACTCC 60.142 45.833 0.00 0.00 0.00 3.85
344 1599 4.142293 GGCCTGAGAAAAATCATTCCACTC 60.142 45.833 0.00 0.00 0.00 3.51
345 1600 3.766051 GGCCTGAGAAAAATCATTCCACT 59.234 43.478 0.00 0.00 0.00 4.00
346 1601 3.766051 AGGCCTGAGAAAAATCATTCCAC 59.234 43.478 3.11 0.00 0.00 4.02
347 1602 4.019174 GAGGCCTGAGAAAAATCATTCCA 58.981 43.478 12.00 0.00 0.00 3.53
348 1603 3.382865 GGAGGCCTGAGAAAAATCATTCC 59.617 47.826 12.00 0.00 0.00 3.01
349 1604 4.276642 AGGAGGCCTGAGAAAAATCATTC 58.723 43.478 12.00 0.00 29.57 2.67
350 1605 4.328118 AGGAGGCCTGAGAAAAATCATT 57.672 40.909 12.00 0.00 29.57 2.57
351 1606 4.228210 TGTAGGAGGCCTGAGAAAAATCAT 59.772 41.667 12.00 0.00 34.61 2.45
352 1607 3.587061 TGTAGGAGGCCTGAGAAAAATCA 59.413 43.478 12.00 0.00 34.61 2.57
353 1608 4.195416 CTGTAGGAGGCCTGAGAAAAATC 58.805 47.826 12.00 0.00 34.61 2.17
354 1609 3.623453 GCTGTAGGAGGCCTGAGAAAAAT 60.623 47.826 12.00 0.00 34.61 1.82
355 1610 2.290323 GCTGTAGGAGGCCTGAGAAAAA 60.290 50.000 12.00 0.00 34.61 1.94
356 1611 1.279271 GCTGTAGGAGGCCTGAGAAAA 59.721 52.381 12.00 0.00 34.61 2.29
357 1612 0.905357 GCTGTAGGAGGCCTGAGAAA 59.095 55.000 12.00 0.00 34.61 2.52
358 1613 0.978146 GGCTGTAGGAGGCCTGAGAA 60.978 60.000 12.00 0.00 44.48 2.87
359 1614 1.381872 GGCTGTAGGAGGCCTGAGA 60.382 63.158 12.00 0.00 44.48 3.27
360 1615 3.225235 GGCTGTAGGAGGCCTGAG 58.775 66.667 12.00 0.00 44.48 3.35
366 1621 1.992277 ACTGGCTGGCTGTAGGAGG 60.992 63.158 11.94 0.00 0.00 4.30
367 1622 1.220206 CACTGGCTGGCTGTAGGAG 59.780 63.158 13.12 0.00 0.00 3.69
368 1623 2.959484 GCACTGGCTGGCTGTAGGA 61.959 63.158 13.12 0.00 36.96 2.94
369 1624 2.437359 GCACTGGCTGGCTGTAGG 60.437 66.667 13.12 4.13 36.96 3.18
370 1625 2.816958 CGCACTGGCTGGCTGTAG 60.817 66.667 13.12 9.19 38.10 2.74
371 1626 4.393155 CCGCACTGGCTGGCTGTA 62.393 66.667 13.12 0.00 38.10 2.74
381 1636 4.742201 CACGAGTCCCCCGCACTG 62.742 72.222 0.00 0.00 0.00 3.66
386 1641 4.760047 CTTGGCACGAGTCCCCCG 62.760 72.222 0.00 0.00 0.00 5.73
387 1642 4.410400 CCTTGGCACGAGTCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
388 1643 3.607370 GACCTTGGCACGAGTCCCC 62.607 68.421 0.00 0.00 0.00 4.81
389 1644 2.047179 GACCTTGGCACGAGTCCC 60.047 66.667 0.00 0.00 0.00 4.46
390 1645 2.432628 CGACCTTGGCACGAGTCC 60.433 66.667 0.00 0.00 0.00 3.85
391 1646 1.733399 GTCGACCTTGGCACGAGTC 60.733 63.158 3.51 0.00 36.74 3.36
392 1647 2.338984 GTCGACCTTGGCACGAGT 59.661 61.111 3.51 0.00 36.74 4.18
393 1648 2.022129 GTGTCGACCTTGGCACGAG 61.022 63.158 14.12 0.00 36.74 4.18
394 1649 2.028484 GTGTCGACCTTGGCACGA 59.972 61.111 14.12 5.70 0.00 4.35
395 1650 3.403057 CGTGTCGACCTTGGCACG 61.403 66.667 14.12 11.29 46.28 5.34
396 1651 1.155424 TTTCGTGTCGACCTTGGCAC 61.155 55.000 14.12 2.06 34.89 5.01
397 1652 0.462225 TTTTCGTGTCGACCTTGGCA 60.462 50.000 14.12 0.00 34.89 4.92
398 1653 0.234884 CTTTTCGTGTCGACCTTGGC 59.765 55.000 14.12 0.00 34.89 4.52
399 1654 0.865769 CCTTTTCGTGTCGACCTTGG 59.134 55.000 14.12 2.01 34.89 3.61
400 1655 0.865769 CCCTTTTCGTGTCGACCTTG 59.134 55.000 14.12 2.59 34.89 3.61
401 1656 0.754472 TCCCTTTTCGTGTCGACCTT 59.246 50.000 14.12 0.00 34.89 3.50
402 1657 0.317479 CTCCCTTTTCGTGTCGACCT 59.683 55.000 14.12 0.00 34.89 3.85
403 1658 1.289800 GCTCCCTTTTCGTGTCGACC 61.290 60.000 14.12 3.43 34.89 4.79
404 1659 0.319641 AGCTCCCTTTTCGTGTCGAC 60.320 55.000 9.11 9.11 34.89 4.20
405 1660 0.391597 AAGCTCCCTTTTCGTGTCGA 59.608 50.000 0.00 0.00 0.00 4.20
406 1661 2.074547 TAAGCTCCCTTTTCGTGTCG 57.925 50.000 0.00 0.00 32.47 4.35
407 1662 3.400255 AGTTAAGCTCCCTTTTCGTGTC 58.600 45.455 0.00 0.00 32.47 3.67
408 1663 3.487120 AGTTAAGCTCCCTTTTCGTGT 57.513 42.857 0.00 0.00 32.47 4.49
409 1664 3.813166 TGAAGTTAAGCTCCCTTTTCGTG 59.187 43.478 0.00 0.00 32.47 4.35
410 1665 3.813724 GTGAAGTTAAGCTCCCTTTTCGT 59.186 43.478 0.00 0.00 32.47 3.85
411 1666 4.065789 AGTGAAGTTAAGCTCCCTTTTCG 58.934 43.478 0.00 0.00 32.47 3.46
412 1667 4.456222 GGAGTGAAGTTAAGCTCCCTTTTC 59.544 45.833 8.05 0.00 41.08 2.29
413 1668 4.141251 TGGAGTGAAGTTAAGCTCCCTTTT 60.141 41.667 13.87 0.00 45.04 2.27
414 1669 3.394606 TGGAGTGAAGTTAAGCTCCCTTT 59.605 43.478 13.87 0.00 45.04 3.11
415 1670 2.979678 TGGAGTGAAGTTAAGCTCCCTT 59.020 45.455 13.87 0.00 45.04 3.95
416 1671 2.303311 GTGGAGTGAAGTTAAGCTCCCT 59.697 50.000 13.87 0.00 45.04 4.20
417 1672 2.615747 GGTGGAGTGAAGTTAAGCTCCC 60.616 54.545 13.87 7.86 45.04 4.30
418 1673 2.615747 GGGTGGAGTGAAGTTAAGCTCC 60.616 54.545 11.03 11.03 45.64 4.70
419 1674 2.038557 TGGGTGGAGTGAAGTTAAGCTC 59.961 50.000 0.00 0.00 0.00 4.09
420 1675 2.039084 CTGGGTGGAGTGAAGTTAAGCT 59.961 50.000 0.00 0.00 0.00 3.74
421 1676 2.427506 CTGGGTGGAGTGAAGTTAAGC 58.572 52.381 0.00 0.00 0.00 3.09
422 1677 2.427506 GCTGGGTGGAGTGAAGTTAAG 58.572 52.381 0.00 0.00 0.00 1.85
423 1678 1.270625 CGCTGGGTGGAGTGAAGTTAA 60.271 52.381 0.00 0.00 0.00 2.01
424 1679 0.320374 CGCTGGGTGGAGTGAAGTTA 59.680 55.000 0.00 0.00 0.00 2.24
425 1680 1.071471 CGCTGGGTGGAGTGAAGTT 59.929 57.895 0.00 0.00 0.00 2.66
426 1681 0.830444 TACGCTGGGTGGAGTGAAGT 60.830 55.000 7.71 0.00 0.00 3.01
427 1682 0.108615 CTACGCTGGGTGGAGTGAAG 60.109 60.000 7.71 0.00 0.00 3.02
428 1683 1.972198 CTACGCTGGGTGGAGTGAA 59.028 57.895 7.71 0.00 0.00 3.18
429 1684 2.646175 GCTACGCTGGGTGGAGTGA 61.646 63.158 12.30 0.00 0.00 3.41
430 1685 2.125512 GCTACGCTGGGTGGAGTG 60.126 66.667 12.30 0.00 0.00 3.51
431 1686 3.391382 GGCTACGCTGGGTGGAGT 61.391 66.667 12.30 0.00 0.00 3.85
432 1687 2.954684 TTGGCTACGCTGGGTGGAG 61.955 63.158 12.30 1.51 0.00 3.86
433 1688 2.925706 TTGGCTACGCTGGGTGGA 60.926 61.111 12.30 0.00 0.00 4.02
434 1689 2.746277 GTTGGCTACGCTGGGTGG 60.746 66.667 7.71 5.70 0.00 4.61
435 1690 3.118454 CGTTGGCTACGCTGGGTG 61.118 66.667 8.76 0.00 44.26 4.61
443 1698 2.046604 GGTGGGGACGTTGGCTAC 60.047 66.667 0.00 0.00 0.00 3.58
444 1699 3.697747 CGGTGGGGACGTTGGCTA 61.698 66.667 0.00 0.00 0.00 3.93
453 1708 3.702048 CGCTTCTTCCGGTGGGGA 61.702 66.667 0.00 0.00 45.40 4.81
454 1709 4.778143 CCGCTTCTTCCGGTGGGG 62.778 72.222 0.00 2.25 40.84 4.96
459 1714 3.652539 TTACGGCCGCTTCTTCCGG 62.653 63.158 28.58 0.00 46.78 5.14
461 1716 1.092348 AATTTACGGCCGCTTCTTCC 58.908 50.000 28.58 0.00 0.00 3.46
462 1717 2.674357 TGTAATTTACGGCCGCTTCTTC 59.326 45.455 28.58 11.30 0.00 2.87
463 1718 2.676342 CTGTAATTTACGGCCGCTTCTT 59.324 45.455 28.58 16.51 0.00 2.52
464 1719 2.093869 TCTGTAATTTACGGCCGCTTCT 60.094 45.455 28.58 8.43 35.03 2.85
465 1720 2.273557 TCTGTAATTTACGGCCGCTTC 58.726 47.619 28.58 9.49 35.03 3.86
466 1721 2.389962 TCTGTAATTTACGGCCGCTT 57.610 45.000 28.58 16.14 35.03 4.68
467 1722 2.614829 ATCTGTAATTTACGGCCGCT 57.385 45.000 28.58 15.49 35.03 5.52
468 1723 3.685836 AAATCTGTAATTTACGGCCGC 57.314 42.857 28.58 7.50 35.03 6.53
469 1724 5.163794 ACTGAAAATCTGTAATTTACGGCCG 60.164 40.000 26.86 26.86 35.03 6.13
470 1725 6.190954 ACTGAAAATCTGTAATTTACGGCC 57.809 37.500 10.05 0.00 35.03 6.13
471 1726 6.033513 GCAACTGAAAATCTGTAATTTACGGC 59.966 38.462 10.05 0.00 35.03 5.68
472 1727 7.081349 TGCAACTGAAAATCTGTAATTTACGG 58.919 34.615 8.81 8.81 36.38 4.02
473 1728 8.500837 TTGCAACTGAAAATCTGTAATTTACG 57.499 30.769 0.00 0.00 0.00 3.18
476 1731 6.424812 GGCTTGCAACTGAAAATCTGTAATTT 59.575 34.615 0.00 0.00 0.00 1.82
478 1733 5.473039 GGCTTGCAACTGAAAATCTGTAAT 58.527 37.500 0.00 0.00 0.00 1.89
481 1736 2.036346 GGGCTTGCAACTGAAAATCTGT 59.964 45.455 0.00 0.00 0.00 3.41
484 1739 1.344114 TGGGGCTTGCAACTGAAAATC 59.656 47.619 0.00 0.00 0.00 2.17
485 1740 1.345415 CTGGGGCTTGCAACTGAAAAT 59.655 47.619 0.00 0.00 0.00 1.82
486 1741 0.752054 CTGGGGCTTGCAACTGAAAA 59.248 50.000 0.00 0.00 0.00 2.29
487 1742 1.747325 GCTGGGGCTTGCAACTGAAA 61.747 55.000 0.00 0.00 35.22 2.69
490 1745 2.913578 TGCTGGGGCTTGCAACTG 60.914 61.111 0.00 0.00 39.59 3.16
602 1952 1.192803 GGGAGTTGAAGACGGGGAGT 61.193 60.000 0.00 0.00 0.00 3.85
1018 2380 3.637273 GGTGAACCTGTCGGGGCT 61.637 66.667 1.89 0.00 40.03 5.19
1023 2385 1.442184 CGAGACGGTGAACCTGTCG 60.442 63.158 14.46 9.86 41.24 4.35
1035 2397 4.838486 GACAGGAGCGCCGAGACG 62.838 72.222 2.29 0.00 39.96 4.18
1210 2572 1.468914 CGAGACGACATTCCTCTGACA 59.531 52.381 0.00 0.00 0.00 3.58
1211 2573 1.469308 ACGAGACGACATTCCTCTGAC 59.531 52.381 0.00 0.00 0.00 3.51
1299 2661 0.107410 TACCATCAACCGCCCACATC 60.107 55.000 0.00 0.00 0.00 3.06
1410 2772 1.427809 CATAGAGCCCCATCCTGACA 58.572 55.000 0.00 0.00 0.00 3.58
1413 2775 1.495579 CCCCATAGAGCCCCATCCTG 61.496 65.000 0.00 0.00 0.00 3.86
1435 2797 6.039605 TCAATCAAAGCATTGTTGAGAGACAA 59.960 34.615 12.46 0.00 43.08 3.18
1440 2802 8.058667 ACATATCAATCAAAGCATTGTTGAGA 57.941 30.769 17.86 15.44 38.60 3.27
1456 2818 3.507233 CCGGCCTTTGCATACATATCAAT 59.493 43.478 0.00 0.00 40.13 2.57
1475 2837 2.823829 GCATAACGCAAGGCTCCGG 61.824 63.158 11.40 0.00 46.39 5.14
1500 2862 3.126858 GCCAAGTAGCATCATCGAAAACA 59.873 43.478 0.00 0.00 0.00 2.83
1501 2863 3.685058 GCCAAGTAGCATCATCGAAAAC 58.315 45.455 0.00 0.00 0.00 2.43
1514 2876 2.076100 TGACATCTTTGCGCCAAGTAG 58.924 47.619 19.49 15.19 0.00 2.57
1557 2919 3.157087 CATACCATGAAGGCCATAACCC 58.843 50.000 5.01 0.00 43.14 4.11
1608 2970 3.554934 CTTAACCCCAGAAGCATGCATA 58.445 45.455 21.98 0.00 0.00 3.14
1716 3078 5.222027 TGGATGGACTTTGTGATCCTTAACA 60.222 40.000 0.00 0.00 36.17 2.41
1719 3081 5.253330 GTTGGATGGACTTTGTGATCCTTA 58.747 41.667 0.00 0.00 36.17 2.69
1785 3147 2.180204 GGCATGGTCGATCAACCCG 61.180 63.158 0.60 0.00 38.65 5.28
1827 3189 1.358103 ACACTAGGACCTGGCTCTACA 59.642 52.381 3.53 0.00 0.00 2.74
1839 3201 1.291033 AGTGCTCCCCATACACTAGGA 59.709 52.381 0.00 0.00 42.65 2.94
1974 3336 0.116342 TCCACCTACCAGAAGAGGCA 59.884 55.000 0.00 0.00 36.17 4.75
2028 3390 2.686405 AGGTGTTTTCTTCAACGTTCCC 59.314 45.455 0.00 0.00 0.00 3.97
2034 3396 2.540973 GCGACCAGGTGTTTTCTTCAAC 60.541 50.000 0.00 0.00 0.00 3.18
2117 3479 0.109132 CTTTGAACCGCTGAATGGGC 60.109 55.000 0.00 0.00 0.00 5.36
2119 3481 0.883833 AGCTTTGAACCGCTGAATGG 59.116 50.000 0.00 0.00 34.69 3.16
2121 3483 2.191128 AGAGCTTTGAACCGCTGAAT 57.809 45.000 0.00 0.00 36.45 2.57
2127 3489 2.069273 CACTGGTAGAGCTTTGAACCG 58.931 52.381 0.00 0.00 34.60 4.44
2134 3496 3.981071 TTATGTGCACTGGTAGAGCTT 57.019 42.857 19.41 0.00 32.86 3.74
2146 3508 4.395854 CAGAGCATAACCAGTTTATGTGCA 59.604 41.667 0.16 0.00 46.30 4.57
2160 3522 3.633525 GTGCCAATGATTCCAGAGCATAA 59.366 43.478 0.00 0.00 31.30 1.90
2182 3544 3.401033 TGTTGATGTGGTCCTGTACAG 57.599 47.619 16.34 16.34 0.00 2.74
2212 3574 4.724399 TCTGGTCTTTTAACTGCCAATGA 58.276 39.130 0.00 0.00 0.00 2.57
2267 3629 2.568062 TCTAATAACCACCGCCTGAACA 59.432 45.455 0.00 0.00 0.00 3.18
2287 3649 0.514691 CAGAGGCACTTCGTTTGCTC 59.485 55.000 5.81 0.00 41.55 4.26
2318 3680 1.603802 AGTGAACATTGCAGACAACCG 59.396 47.619 0.00 0.00 38.99 4.44
2325 3687 2.507484 TGGGAAGAGTGAACATTGCAG 58.493 47.619 0.00 0.00 0.00 4.41
2494 3856 9.384764 GCAACTCAGTTACTATCCTAGAAAAAT 57.615 33.333 0.00 0.00 0.00 1.82
2534 3898 3.490439 TCCTTGATTCTGCTGTCAACA 57.510 42.857 0.00 0.00 31.55 3.33
2548 3912 6.950041 AGAATGTTCTTTTGGATCATCCTTGA 59.050 34.615 4.96 0.00 33.52 3.02
2557 3921 9.466497 TCTTATGCTTAGAATGTTCTTTTGGAT 57.534 29.630 0.00 2.22 38.70 3.41
2585 3949 7.808218 TCTTGGGAAGTTTAGGTTCTTAGAAA 58.192 34.615 0.00 0.00 0.00 2.52
2589 3953 5.072600 TGCTCTTGGGAAGTTTAGGTTCTTA 59.927 40.000 0.00 0.00 0.00 2.10
2598 3962 3.244596 GGTCTAGTGCTCTTGGGAAGTTT 60.245 47.826 0.00 0.00 0.00 2.66
2679 4043 6.040878 CCATTTGAGCATTCTTGAATCTTCC 58.959 40.000 0.00 0.00 0.00 3.46
2682 4046 5.479375 ACACCATTTGAGCATTCTTGAATCT 59.521 36.000 0.00 0.00 0.00 2.40
2683 4047 5.575606 CACACCATTTGAGCATTCTTGAATC 59.424 40.000 0.00 0.00 0.00 2.52
2687 4051 4.247267 ACACACCATTTGAGCATTCTTG 57.753 40.909 0.00 0.00 0.00 3.02
2711 4075 3.340814 AGCTCATTTCAGTCGATGGTT 57.659 42.857 0.00 0.00 0.00 3.67
2736 4100 6.333416 CAGCTGCATAGAAAGTGAGTACTAA 58.667 40.000 0.00 0.00 35.69 2.24
2750 4114 3.405093 TTCGGCCCCAGCTGCATAG 62.405 63.158 8.66 0.00 45.70 2.23
2769 4133 4.214332 ACTCAAGTCAAAGAGGATTTTCGC 59.786 41.667 0.00 0.00 36.20 4.70
2771 4135 6.920210 CCAAACTCAAGTCAAAGAGGATTTTC 59.080 38.462 0.00 0.00 36.20 2.29
2777 4141 3.817647 CCTCCAAACTCAAGTCAAAGAGG 59.182 47.826 0.00 0.00 36.20 3.69
2812 4176 8.562892 AGAAACTGAGAAATTACATGTTCTGTG 58.437 33.333 2.30 0.00 38.92 3.66
2830 4194 5.125257 TGAACAAATGTGCAAGAGAAACTGA 59.875 36.000 0.00 0.00 28.73 3.41
2850 4214 9.651718 GTCATCCATTTTATAGTCGAAATGAAC 57.348 33.333 6.79 0.00 42.85 3.18
2873 4237 6.161855 AGAGAGTAATGTCTTGTGTTGTCA 57.838 37.500 0.00 0.00 0.00 3.58
2898 4262 0.460284 CCGGTCCCAAGATGAGTTCG 60.460 60.000 0.00 0.00 0.00 3.95
2903 4267 0.758734 CATAGCCGGTCCCAAGATGA 59.241 55.000 1.90 0.00 0.00 2.92
2934 4321 6.416415 TCCGGCTATGATGTTTTAAGGTAAA 58.584 36.000 0.00 0.00 0.00 2.01
2955 4342 5.932303 TCTACTCCTCAAAATTCAAACTCCG 59.068 40.000 0.00 0.00 0.00 4.63
2965 4352 9.838339 CACCACTATAAATCTACTCCTCAAAAT 57.162 33.333 0.00 0.00 0.00 1.82
3002 4389 2.271944 TCTCAGTGAGTTCGACTCCA 57.728 50.000 19.53 0.00 44.44 3.86
3003 4390 2.293677 TGTTCTCAGTGAGTTCGACTCC 59.706 50.000 19.53 1.66 44.44 3.85
3050 4439 0.258774 AAGGTTTATGCCCTGGCGAT 59.741 50.000 3.32 1.45 45.51 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.