Multiple sequence alignment - TraesCS1B01G111600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G111600 chr1B 100.000 3161 0 0 1 3161 129554330 129551170 0.000000e+00 5838.0
1 TraesCS1B01G111600 chr1B 84.100 1239 171 19 995 2219 129513629 129512403 0.000000e+00 1173.0
2 TraesCS1B01G111600 chr1B 89.752 322 30 3 2675 2995 129512009 129511690 2.930000e-110 409.0
3 TraesCS1B01G111600 chr1B 85.337 341 32 12 2345 2679 129512395 129512067 1.400000e-88 337.0
4 TraesCS1B01G111600 chr1A 96.187 2098 64 7 924 3005 96438008 96440105 0.000000e+00 3417.0
5 TraesCS1B01G111600 chr1A 85.840 1702 202 30 995 2681 96445804 96447481 0.000000e+00 1772.0
6 TraesCS1B01G111600 chr1A 88.889 315 32 3 2673 2986 96447536 96447848 4.950000e-103 385.0
7 TraesCS1B01G111600 chr1A 89.804 255 15 7 156 406 96437486 96437733 1.830000e-82 316.0
8 TraesCS1B01G111600 chr1A 98.507 67 0 1 3095 3161 96440106 96440171 1.990000e-22 117.0
9 TraesCS1B01G111600 chr1D 95.607 2117 55 10 895 3003 79088624 79086538 0.000000e+00 3360.0
10 TraesCS1B01G111600 chr1D 86.655 1701 194 24 995 2681 79078561 79076880 0.000000e+00 1853.0
11 TraesCS1B01G111600 chr1D 77.913 824 171 10 1355 2171 79050617 79049798 1.310000e-138 503.0
12 TraesCS1B01G111600 chr1D 88.803 259 24 2 157 415 79088976 79088723 2.370000e-81 313.0
13 TraesCS1B01G111600 chr1D 92.929 99 4 2 3000 3098 328886945 328887040 1.180000e-29 141.0
14 TraesCS1B01G111600 chr1D 98.485 66 0 1 3096 3161 79086538 79086474 7.160000e-22 115.0
15 TraesCS1B01G111600 chr1D 82.692 104 9 6 481 578 201526642 201526742 2.020000e-12 84.2
16 TraesCS1B01G111600 chr1D 93.617 47 1 1 800 844 79088708 79088662 5.660000e-08 69.4
17 TraesCS1B01G111600 chrUn 95.098 102 3 2 2998 3099 257220159 257220258 3.260000e-35 159.0
18 TraesCS1B01G111600 chrUn 95.098 102 3 2 2998 3099 257230610 257230709 3.260000e-35 159.0
19 TraesCS1B01G111600 chrUn 92.308 104 4 4 2998 3100 257220258 257220158 9.140000e-31 145.0
20 TraesCS1B01G111600 chrUn 92.308 104 4 4 2998 3100 257230709 257230609 9.140000e-31 145.0
21 TraesCS1B01G111600 chrUn 84.259 108 12 4 476 579 104011489 104011595 2.010000e-17 100.0
22 TraesCS1B01G111600 chr6A 94.898 98 5 0 3001 3098 511531710 511531613 1.520000e-33 154.0
23 TraesCS1B01G111600 chr7D 92.453 106 8 0 2992 3097 578742056 578742161 5.460000e-33 152.0
24 TraesCS1B01G111600 chr7D 82.000 100 13 5 491 585 121667444 121667345 2.610000e-11 80.5
25 TraesCS1B01G111600 chr4D 92.157 102 6 1 3000 3099 45339341 45339240 3.290000e-30 143.0
26 TraesCS1B01G111600 chr4D 94.444 36 2 0 550 585 5065803 5065768 4.400000e-04 56.5
27 TraesCS1B01G111600 chr2D 91.346 104 8 1 2994 3097 107564781 107564883 1.180000e-29 141.0
28 TraesCS1B01G111600 chr2D 78.238 193 30 8 582 762 344348047 344347855 2.580000e-21 113.0
29 TraesCS1B01G111600 chr6D 83.108 148 19 4 442 585 99236340 99236195 2.560000e-26 130.0
30 TraesCS1B01G111600 chr2A 85.321 109 16 0 589 697 455519034 455518926 2.580000e-21 113.0
31 TraesCS1B01G111600 chr2A 81.720 93 13 4 489 578 685494229 685494138 1.220000e-09 75.0
32 TraesCS1B01G111600 chr5D 78.621 145 18 10 444 585 529271290 529271156 2.020000e-12 84.2
33 TraesCS1B01G111600 chr6B 84.146 82 13 0 606 687 159399650 159399569 2.610000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G111600 chr1B 129551170 129554330 3160 True 5838.000000 5838 100.000000 1 3161 1 chr1B.!!$R1 3160
1 TraesCS1B01G111600 chr1B 129511690 129513629 1939 True 639.666667 1173 86.396333 995 2995 3 chr1B.!!$R2 2000
2 TraesCS1B01G111600 chr1A 96437486 96440171 2685 False 1283.333333 3417 94.832667 156 3161 3 chr1A.!!$F1 3005
3 TraesCS1B01G111600 chr1A 96445804 96447848 2044 False 1078.500000 1772 87.364500 995 2986 2 chr1A.!!$F2 1991
4 TraesCS1B01G111600 chr1D 79076880 79078561 1681 True 1853.000000 1853 86.655000 995 2681 1 chr1D.!!$R2 1686
5 TraesCS1B01G111600 chr1D 79086474 79088976 2502 True 964.350000 3360 94.128000 157 3161 4 chr1D.!!$R3 3004
6 TraesCS1B01G111600 chr1D 79049798 79050617 819 True 503.000000 503 77.913000 1355 2171 1 chr1D.!!$R1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 499 0.165944 CCGCGCTGACGAAGAAAATT 59.834 50.0 5.56 0.00 43.93 1.82 F
637 641 0.175302 CGGAGAGCTGCTCAGATGTT 59.825 55.0 29.49 9.44 45.81 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1501 4.200283 GCGAGCTCCTGGGACGAG 62.200 72.222 8.47 0.0 0.00 4.18 R
2274 2382 5.717038 AACAAAGAAAGTTTTGAATGGCG 57.283 34.783 5.58 0.0 39.79 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.834489 TGCTTTGGCAAGAATTTGGAA 57.166 38.095 0.00 0.00 46.36 3.53
22 23 3.731089 TGCTTTGGCAAGAATTTGGAAG 58.269 40.909 0.00 0.00 46.36 3.46
23 24 2.481568 GCTTTGGCAAGAATTTGGAAGC 59.518 45.455 0.00 0.00 38.54 3.86
24 25 3.731089 CTTTGGCAAGAATTTGGAAGCA 58.269 40.909 0.00 0.00 34.79 3.91
25 26 4.320870 CTTTGGCAAGAATTTGGAAGCAT 58.679 39.130 0.00 0.00 34.79 3.79
26 27 5.480642 TTTGGCAAGAATTTGGAAGCATA 57.519 34.783 0.00 0.00 34.79 3.14
27 28 5.680594 TTGGCAAGAATTTGGAAGCATAT 57.319 34.783 0.00 0.00 34.79 1.78
28 29 5.013568 TGGCAAGAATTTGGAAGCATATG 57.986 39.130 0.00 0.00 34.79 1.78
29 30 4.141892 TGGCAAGAATTTGGAAGCATATGG 60.142 41.667 4.56 0.00 34.79 2.74
30 31 4.141869 GGCAAGAATTTGGAAGCATATGGT 60.142 41.667 0.40 0.40 34.79 3.55
31 32 5.045872 GCAAGAATTTGGAAGCATATGGTC 58.954 41.667 8.07 2.13 34.79 4.02
32 33 5.394443 GCAAGAATTTGGAAGCATATGGTCA 60.394 40.000 8.07 0.00 34.79 4.02
33 34 6.684613 GCAAGAATTTGGAAGCATATGGTCAT 60.685 38.462 8.07 0.00 34.79 3.06
34 35 7.470424 GCAAGAATTTGGAAGCATATGGTCATA 60.470 37.037 8.07 0.00 34.79 2.15
35 36 7.756395 AGAATTTGGAAGCATATGGTCATAG 57.244 36.000 8.07 0.00 0.00 2.23
36 37 7.293073 AGAATTTGGAAGCATATGGTCATAGT 58.707 34.615 8.07 0.00 0.00 2.12
37 38 7.446625 AGAATTTGGAAGCATATGGTCATAGTC 59.553 37.037 8.07 7.05 0.00 2.59
38 39 5.628797 TTGGAAGCATATGGTCATAGTCA 57.371 39.130 8.07 0.00 0.00 3.41
39 40 5.830799 TGGAAGCATATGGTCATAGTCAT 57.169 39.130 8.07 0.00 0.00 3.06
40 41 6.933514 TGGAAGCATATGGTCATAGTCATA 57.066 37.500 8.07 0.00 0.00 2.15
41 42 6.939622 TGGAAGCATATGGTCATAGTCATAG 58.060 40.000 8.07 0.00 30.56 2.23
42 43 6.498303 TGGAAGCATATGGTCATAGTCATAGT 59.502 38.462 8.07 0.00 30.56 2.12
43 44 7.038659 GGAAGCATATGGTCATAGTCATAGTC 58.961 42.308 8.07 0.00 30.56 2.59
44 45 7.093552 GGAAGCATATGGTCATAGTCATAGTCT 60.094 40.741 8.07 0.00 30.56 3.24
45 46 7.167924 AGCATATGGTCATAGTCATAGTCTG 57.832 40.000 0.40 0.00 30.56 3.51
46 47 5.809562 GCATATGGTCATAGTCATAGTCTGC 59.190 44.000 4.56 0.00 30.56 4.26
47 48 4.881019 ATGGTCATAGTCATAGTCTGCC 57.119 45.455 0.00 0.00 0.00 4.85
48 49 2.965831 TGGTCATAGTCATAGTCTGCCC 59.034 50.000 0.00 0.00 0.00 5.36
49 50 3.235200 GGTCATAGTCATAGTCTGCCCT 58.765 50.000 0.00 0.00 0.00 5.19
50 51 3.643792 GGTCATAGTCATAGTCTGCCCTT 59.356 47.826 0.00 0.00 0.00 3.95
51 52 4.262249 GGTCATAGTCATAGTCTGCCCTTC 60.262 50.000 0.00 0.00 0.00 3.46
52 53 3.570125 TCATAGTCATAGTCTGCCCTTCG 59.430 47.826 0.00 0.00 0.00 3.79
53 54 1.853963 AGTCATAGTCTGCCCTTCGT 58.146 50.000 0.00 0.00 0.00 3.85
54 55 2.180276 AGTCATAGTCTGCCCTTCGTT 58.820 47.619 0.00 0.00 0.00 3.85
55 56 3.362706 AGTCATAGTCTGCCCTTCGTTA 58.637 45.455 0.00 0.00 0.00 3.18
56 57 3.767673 AGTCATAGTCTGCCCTTCGTTAA 59.232 43.478 0.00 0.00 0.00 2.01
57 58 4.406003 AGTCATAGTCTGCCCTTCGTTAAT 59.594 41.667 0.00 0.00 0.00 1.40
58 59 4.508124 GTCATAGTCTGCCCTTCGTTAATG 59.492 45.833 0.00 0.00 0.00 1.90
59 60 4.161565 TCATAGTCTGCCCTTCGTTAATGT 59.838 41.667 0.00 0.00 0.00 2.71
60 61 5.361571 TCATAGTCTGCCCTTCGTTAATGTA 59.638 40.000 0.00 0.00 0.00 2.29
61 62 4.546829 AGTCTGCCCTTCGTTAATGTAA 57.453 40.909 0.00 0.00 0.00 2.41
62 63 5.099042 AGTCTGCCCTTCGTTAATGTAAT 57.901 39.130 0.00 0.00 0.00 1.89
63 64 5.497474 AGTCTGCCCTTCGTTAATGTAATT 58.503 37.500 0.00 0.00 41.28 1.40
64 65 5.944007 AGTCTGCCCTTCGTTAATGTAATTT 59.056 36.000 0.00 0.00 37.87 1.82
65 66 6.433093 AGTCTGCCCTTCGTTAATGTAATTTT 59.567 34.615 0.00 0.00 37.87 1.82
66 67 6.745907 GTCTGCCCTTCGTTAATGTAATTTTC 59.254 38.462 0.00 0.00 37.87 2.29
67 68 5.632959 TGCCCTTCGTTAATGTAATTTTCG 58.367 37.500 0.00 0.00 37.87 3.46
68 69 5.181622 TGCCCTTCGTTAATGTAATTTTCGT 59.818 36.000 0.00 0.00 37.87 3.85
69 70 6.088173 GCCCTTCGTTAATGTAATTTTCGTT 58.912 36.000 0.00 0.00 37.87 3.85
70 71 6.583427 GCCCTTCGTTAATGTAATTTTCGTTT 59.417 34.615 0.00 0.00 37.87 3.60
71 72 7.201291 GCCCTTCGTTAATGTAATTTTCGTTTC 60.201 37.037 0.00 0.00 37.87 2.78
72 73 8.019094 CCCTTCGTTAATGTAATTTTCGTTTCT 58.981 33.333 0.00 0.00 37.87 2.52
73 74 8.837059 CCTTCGTTAATGTAATTTTCGTTTCTG 58.163 33.333 0.00 0.00 37.87 3.02
74 75 9.377383 CTTCGTTAATGTAATTTTCGTTTCTGT 57.623 29.630 0.00 0.00 37.87 3.41
75 76 8.702408 TCGTTAATGTAATTTTCGTTTCTGTG 57.298 30.769 0.00 0.00 37.87 3.66
76 77 7.799447 TCGTTAATGTAATTTTCGTTTCTGTGG 59.201 33.333 0.00 0.00 37.87 4.17
77 78 7.060174 CGTTAATGTAATTTTCGTTTCTGTGGG 59.940 37.037 0.00 0.00 37.87 4.61
78 79 6.399639 AATGTAATTTTCGTTTCTGTGGGT 57.600 33.333 0.00 0.00 26.74 4.51
79 80 5.427036 TGTAATTTTCGTTTCTGTGGGTC 57.573 39.130 0.00 0.00 0.00 4.46
80 81 4.276431 TGTAATTTTCGTTTCTGTGGGTCC 59.724 41.667 0.00 0.00 0.00 4.46
81 82 2.421751 TTTTCGTTTCTGTGGGTCCA 57.578 45.000 0.00 0.00 0.00 4.02
82 83 2.421751 TTTCGTTTCTGTGGGTCCAA 57.578 45.000 0.00 0.00 0.00 3.53
83 84 2.649531 TTCGTTTCTGTGGGTCCAAT 57.350 45.000 0.00 0.00 0.00 3.16
84 85 2.649531 TCGTTTCTGTGGGTCCAATT 57.350 45.000 0.00 0.00 0.00 2.32
85 86 3.773418 TCGTTTCTGTGGGTCCAATTA 57.227 42.857 0.00 0.00 0.00 1.40
86 87 4.295141 TCGTTTCTGTGGGTCCAATTAT 57.705 40.909 0.00 0.00 0.00 1.28
87 88 5.423704 TCGTTTCTGTGGGTCCAATTATA 57.576 39.130 0.00 0.00 0.00 0.98
88 89 5.996644 TCGTTTCTGTGGGTCCAATTATAT 58.003 37.500 0.00 0.00 0.00 0.86
89 90 5.820423 TCGTTTCTGTGGGTCCAATTATATG 59.180 40.000 0.00 0.00 0.00 1.78
90 91 5.588648 CGTTTCTGTGGGTCCAATTATATGT 59.411 40.000 0.00 0.00 0.00 2.29
91 92 6.764085 CGTTTCTGTGGGTCCAATTATATGTA 59.236 38.462 0.00 0.00 0.00 2.29
92 93 7.281324 CGTTTCTGTGGGTCCAATTATATGTAA 59.719 37.037 0.00 0.00 0.00 2.41
93 94 9.131791 GTTTCTGTGGGTCCAATTATATGTAAT 57.868 33.333 0.00 0.00 31.89 1.89
94 95 9.707957 TTTCTGTGGGTCCAATTATATGTAATT 57.292 29.630 1.87 1.87 40.31 1.40
278 279 2.099062 CGATCGCTTTGCTGCCAC 59.901 61.111 0.26 0.00 0.00 5.01
308 309 7.875327 AACACAATAATACGCCTTCCTAATT 57.125 32.000 0.00 0.00 0.00 1.40
331 335 6.942886 TTTTGTAAGCAATAAAGCAATCCG 57.057 33.333 0.00 0.00 36.85 4.18
332 336 5.888691 TTGTAAGCAATAAAGCAATCCGA 57.111 34.783 0.00 0.00 36.85 4.55
333 337 5.888691 TGTAAGCAATAAAGCAATCCGAA 57.111 34.783 0.00 0.00 36.85 4.30
343 347 1.468520 AGCAATCCGAACCGAATTGTG 59.531 47.619 0.80 0.00 0.00 3.33
348 352 0.604243 CCGAACCGAATTGTGTGGGA 60.604 55.000 0.00 0.00 0.00 4.37
382 386 3.287222 CATACCGGGACATCAAACCAAT 58.713 45.455 6.32 0.00 0.00 3.16
383 387 1.834188 ACCGGGACATCAAACCAATC 58.166 50.000 6.32 0.00 0.00 2.67
384 388 1.074727 ACCGGGACATCAAACCAATCA 59.925 47.619 6.32 0.00 0.00 2.57
385 389 2.166829 CCGGGACATCAAACCAATCAA 58.833 47.619 0.00 0.00 0.00 2.57
386 390 2.560542 CCGGGACATCAAACCAATCAAA 59.439 45.455 0.00 0.00 0.00 2.69
387 391 3.195396 CCGGGACATCAAACCAATCAAAT 59.805 43.478 0.00 0.00 0.00 2.32
412 416 1.425448 CCCTTCACCTCTTTCCCTTGT 59.575 52.381 0.00 0.00 0.00 3.16
415 419 3.583086 CCTTCACCTCTTTCCCTTGTAGA 59.417 47.826 0.00 0.00 0.00 2.59
416 420 4.323104 CCTTCACCTCTTTCCCTTGTAGAG 60.323 50.000 0.00 0.00 36.11 2.43
417 421 3.858135 TCACCTCTTTCCCTTGTAGAGT 58.142 45.455 0.00 0.00 34.87 3.24
418 422 5.006896 TCACCTCTTTCCCTTGTAGAGTA 57.993 43.478 0.00 0.00 34.87 2.59
419 423 5.399991 TCACCTCTTTCCCTTGTAGAGTAA 58.600 41.667 0.00 0.00 34.87 2.24
420 424 6.023603 TCACCTCTTTCCCTTGTAGAGTAAT 58.976 40.000 0.00 0.00 34.87 1.89
421 425 7.186972 TCACCTCTTTCCCTTGTAGAGTAATA 58.813 38.462 0.00 0.00 34.87 0.98
439 443 7.880195 AGAGTAATATAAATCTGGTCACATGGC 59.120 37.037 0.00 0.00 0.00 4.40
440 444 5.947228 AATATAAATCTGGTCACATGGCG 57.053 39.130 0.00 0.00 0.00 5.69
441 445 3.558931 ATAAATCTGGTCACATGGCGA 57.441 42.857 0.00 0.00 0.00 5.54
442 446 1.742761 AAATCTGGTCACATGGCGAG 58.257 50.000 0.00 0.00 0.00 5.03
443 447 0.904649 AATCTGGTCACATGGCGAGA 59.095 50.000 0.47 0.47 38.79 4.04
444 448 0.904649 ATCTGGTCACATGGCGAGAA 59.095 50.000 2.19 0.00 37.99 2.87
446 450 2.107366 TCTGGTCACATGGCGAGAATA 58.893 47.619 0.00 0.00 31.63 1.75
447 451 2.159099 TCTGGTCACATGGCGAGAATAC 60.159 50.000 0.00 0.00 31.63 1.89
448 452 1.552792 TGGTCACATGGCGAGAATACA 59.447 47.619 0.00 0.00 0.00 2.29
449 453 1.933853 GGTCACATGGCGAGAATACAC 59.066 52.381 0.00 0.00 0.00 2.90
450 454 2.418746 GGTCACATGGCGAGAATACACT 60.419 50.000 0.00 0.00 0.00 3.55
451 455 3.262420 GTCACATGGCGAGAATACACTT 58.738 45.455 0.00 0.00 0.00 3.16
452 456 3.684788 GTCACATGGCGAGAATACACTTT 59.315 43.478 0.00 0.00 0.00 2.66
453 457 4.154195 GTCACATGGCGAGAATACACTTTT 59.846 41.667 0.00 0.00 0.00 2.27
454 458 4.154015 TCACATGGCGAGAATACACTTTTG 59.846 41.667 0.00 0.00 0.00 2.44
455 459 4.154015 CACATGGCGAGAATACACTTTTGA 59.846 41.667 0.00 0.00 0.00 2.69
456 460 4.393062 ACATGGCGAGAATACACTTTTGAG 59.607 41.667 0.00 0.00 0.00 3.02
457 461 2.742053 TGGCGAGAATACACTTTTGAGC 59.258 45.455 0.00 0.00 0.00 4.26
458 462 2.096013 GGCGAGAATACACTTTTGAGCC 59.904 50.000 0.00 0.00 0.00 4.70
459 463 2.096013 GCGAGAATACACTTTTGAGCCC 59.904 50.000 0.00 0.00 0.00 5.19
460 464 3.334691 CGAGAATACACTTTTGAGCCCA 58.665 45.455 0.00 0.00 0.00 5.36
461 465 3.372206 CGAGAATACACTTTTGAGCCCAG 59.628 47.826 0.00 0.00 0.00 4.45
462 466 3.690460 AGAATACACTTTTGAGCCCAGG 58.310 45.455 0.00 0.00 0.00 4.45
463 467 1.839424 ATACACTTTTGAGCCCAGGC 58.161 50.000 0.00 0.00 42.33 4.85
473 477 2.827642 GCCCAGGCTCAGATGCAC 60.828 66.667 0.08 0.00 38.26 4.57
474 478 2.513204 CCCAGGCTCAGATGCACG 60.513 66.667 0.00 0.00 34.04 5.34
475 479 3.200593 CCAGGCTCAGATGCACGC 61.201 66.667 0.00 0.00 34.04 5.34
476 480 3.200593 CAGGCTCAGATGCACGCC 61.201 66.667 0.00 0.00 42.79 5.68
477 481 4.479993 AGGCTCAGATGCACGCCC 62.480 66.667 8.59 0.00 43.48 6.13
492 496 2.736995 CCCGCGCTGACGAAGAAA 60.737 61.111 5.56 0.00 43.93 2.52
493 497 2.314647 CCCGCGCTGACGAAGAAAA 61.315 57.895 5.56 0.00 43.93 2.29
494 498 1.635663 CCCGCGCTGACGAAGAAAAT 61.636 55.000 5.56 0.00 43.93 1.82
495 499 0.165944 CCGCGCTGACGAAGAAAATT 59.834 50.000 5.56 0.00 43.93 1.82
496 500 1.514136 CGCGCTGACGAAGAAAATTC 58.486 50.000 5.56 0.00 43.93 2.17
497 501 1.136363 CGCGCTGACGAAGAAAATTCA 60.136 47.619 5.56 0.00 43.93 2.57
498 502 2.661709 CGCGCTGACGAAGAAAATTCAA 60.662 45.455 5.56 0.00 43.93 2.69
499 503 3.296628 GCGCTGACGAAGAAAATTCAAA 58.703 40.909 0.00 0.00 43.93 2.69
500 504 3.728718 GCGCTGACGAAGAAAATTCAAAA 59.271 39.130 0.00 0.00 43.93 2.44
501 505 4.206200 GCGCTGACGAAGAAAATTCAAAAA 59.794 37.500 0.00 0.00 43.93 1.94
555 559 7.938563 TTTTTGTGTGGTAGTAAATTGATGC 57.061 32.000 0.00 0.00 0.00 3.91
556 560 4.937696 TGTGTGGTAGTAAATTGATGCG 57.062 40.909 0.00 0.00 0.00 4.73
557 561 4.320023 TGTGTGGTAGTAAATTGATGCGT 58.680 39.130 0.00 0.00 0.00 5.24
558 562 4.153296 TGTGTGGTAGTAAATTGATGCGTG 59.847 41.667 0.00 0.00 0.00 5.34
559 563 4.390603 GTGTGGTAGTAAATTGATGCGTGA 59.609 41.667 0.00 0.00 0.00 4.35
560 564 4.629634 TGTGGTAGTAAATTGATGCGTGAG 59.370 41.667 0.00 0.00 0.00 3.51
561 565 4.034048 GTGGTAGTAAATTGATGCGTGAGG 59.966 45.833 0.00 0.00 0.00 3.86
562 566 4.189231 GGTAGTAAATTGATGCGTGAGGT 58.811 43.478 0.00 0.00 0.00 3.85
563 567 4.270325 GGTAGTAAATTGATGCGTGAGGTC 59.730 45.833 0.00 0.00 0.00 3.85
564 568 3.270877 AGTAAATTGATGCGTGAGGTCC 58.729 45.455 0.00 0.00 0.00 4.46
565 569 1.086696 AAATTGATGCGTGAGGTCCG 58.913 50.000 0.00 0.00 0.00 4.79
572 576 4.598257 CGTGAGGTCCGCTTCAAT 57.402 55.556 0.00 0.00 32.39 2.57
573 577 2.840974 CGTGAGGTCCGCTTCAATT 58.159 52.632 0.00 0.00 32.39 2.32
574 578 1.156736 CGTGAGGTCCGCTTCAATTT 58.843 50.000 0.00 0.00 32.39 1.82
575 579 1.535462 CGTGAGGTCCGCTTCAATTTT 59.465 47.619 0.00 0.00 32.39 1.82
576 580 2.412847 CGTGAGGTCCGCTTCAATTTTC 60.413 50.000 0.00 0.00 32.39 2.29
577 581 2.552315 GTGAGGTCCGCTTCAATTTTCA 59.448 45.455 0.00 0.00 32.39 2.69
578 582 3.004315 GTGAGGTCCGCTTCAATTTTCAA 59.996 43.478 0.00 0.00 32.39 2.69
579 583 3.004315 TGAGGTCCGCTTCAATTTTCAAC 59.996 43.478 0.00 0.00 0.00 3.18
580 584 3.222603 AGGTCCGCTTCAATTTTCAACT 58.777 40.909 0.00 0.00 0.00 3.16
581 585 3.636764 AGGTCCGCTTCAATTTTCAACTT 59.363 39.130 0.00 0.00 0.00 2.66
582 586 4.825085 AGGTCCGCTTCAATTTTCAACTTA 59.175 37.500 0.00 0.00 0.00 2.24
583 587 5.476945 AGGTCCGCTTCAATTTTCAACTTAT 59.523 36.000 0.00 0.00 0.00 1.73
584 588 6.015434 AGGTCCGCTTCAATTTTCAACTTATT 60.015 34.615 0.00 0.00 0.00 1.40
585 589 6.308041 GGTCCGCTTCAATTTTCAACTTATTC 59.692 38.462 0.00 0.00 0.00 1.75
586 590 6.032460 GTCCGCTTCAATTTTCAACTTATTCG 59.968 38.462 0.00 0.00 0.00 3.34
587 591 5.856455 CCGCTTCAATTTTCAACTTATTCGT 59.144 36.000 0.00 0.00 0.00 3.85
588 592 6.183359 CCGCTTCAATTTTCAACTTATTCGTG 60.183 38.462 0.00 0.00 0.00 4.35
589 593 6.516739 GCTTCAATTTTCAACTTATTCGTGC 58.483 36.000 0.00 0.00 0.00 5.34
590 594 6.143758 GCTTCAATTTTCAACTTATTCGTGCA 59.856 34.615 0.00 0.00 0.00 4.57
591 595 6.984740 TCAATTTTCAACTTATTCGTGCAC 57.015 33.333 6.82 6.82 0.00 4.57
592 596 6.734137 TCAATTTTCAACTTATTCGTGCACT 58.266 32.000 16.19 0.00 0.00 4.40
593 597 6.636447 TCAATTTTCAACTTATTCGTGCACTG 59.364 34.615 16.19 8.79 0.00 3.66
594 598 3.536158 TTCAACTTATTCGTGCACTGC 57.464 42.857 16.19 0.00 0.00 4.40
595 599 2.766313 TCAACTTATTCGTGCACTGCT 58.234 42.857 16.19 1.11 0.00 4.24
596 600 2.736721 TCAACTTATTCGTGCACTGCTC 59.263 45.455 16.19 0.00 0.00 4.26
597 601 2.738846 CAACTTATTCGTGCACTGCTCT 59.261 45.455 16.19 0.00 0.00 4.09
598 602 2.341257 ACTTATTCGTGCACTGCTCTG 58.659 47.619 16.19 3.87 0.00 3.35
599 603 2.029020 ACTTATTCGTGCACTGCTCTGA 60.029 45.455 16.19 0.00 0.00 3.27
600 604 2.967599 TATTCGTGCACTGCTCTGAT 57.032 45.000 16.19 1.09 0.00 2.90
601 605 2.105006 ATTCGTGCACTGCTCTGATT 57.895 45.000 16.19 0.00 0.00 2.57
602 606 1.432514 TTCGTGCACTGCTCTGATTC 58.567 50.000 16.19 0.00 0.00 2.52
603 607 0.733909 TCGTGCACTGCTCTGATTCG 60.734 55.000 16.19 0.00 0.00 3.34
604 608 0.733909 CGTGCACTGCTCTGATTCGA 60.734 55.000 16.19 0.00 0.00 3.71
605 609 1.649664 GTGCACTGCTCTGATTCGAT 58.350 50.000 10.32 0.00 0.00 3.59
606 610 2.005451 GTGCACTGCTCTGATTCGATT 58.995 47.619 10.32 0.00 0.00 3.34
607 611 2.417933 GTGCACTGCTCTGATTCGATTT 59.582 45.455 10.32 0.00 0.00 2.17
608 612 2.417586 TGCACTGCTCTGATTCGATTTG 59.582 45.455 1.98 0.00 0.00 2.32
609 613 2.417933 GCACTGCTCTGATTCGATTTGT 59.582 45.455 0.00 0.00 0.00 2.83
610 614 3.484886 GCACTGCTCTGATTCGATTTGTC 60.485 47.826 0.00 0.00 0.00 3.18
611 615 3.931468 CACTGCTCTGATTCGATTTGTCT 59.069 43.478 0.00 0.00 0.00 3.41
612 616 4.032672 CACTGCTCTGATTCGATTTGTCTC 59.967 45.833 0.00 0.00 0.00 3.36
613 617 4.081752 ACTGCTCTGATTCGATTTGTCTCT 60.082 41.667 0.00 0.00 0.00 3.10
614 618 4.825422 TGCTCTGATTCGATTTGTCTCTT 58.175 39.130 0.00 0.00 0.00 2.85
615 619 5.240891 TGCTCTGATTCGATTTGTCTCTTT 58.759 37.500 0.00 0.00 0.00 2.52
616 620 5.702670 TGCTCTGATTCGATTTGTCTCTTTT 59.297 36.000 0.00 0.00 0.00 2.27
617 621 6.020372 GCTCTGATTCGATTTGTCTCTTTTG 58.980 40.000 0.00 0.00 0.00 2.44
618 622 5.931532 TCTGATTCGATTTGTCTCTTTTGC 58.068 37.500 0.00 0.00 0.00 3.68
619 623 4.711721 TGATTCGATTTGTCTCTTTTGCG 58.288 39.130 0.00 0.00 0.00 4.85
620 624 3.536158 TTCGATTTGTCTCTTTTGCGG 57.464 42.857 0.00 0.00 0.00 5.69
621 625 2.761559 TCGATTTGTCTCTTTTGCGGA 58.238 42.857 0.00 0.00 0.00 5.54
622 626 2.736721 TCGATTTGTCTCTTTTGCGGAG 59.263 45.455 0.00 0.00 0.00 4.63
623 627 2.736721 CGATTTGTCTCTTTTGCGGAGA 59.263 45.455 0.00 0.00 37.48 3.71
624 628 3.181526 CGATTTGTCTCTTTTGCGGAGAG 60.182 47.826 4.85 4.85 40.02 3.20
629 633 0.673022 CTCTTTTGCGGAGAGCTGCT 60.673 55.000 0.00 0.00 46.76 4.24
630 634 0.671781 TCTTTTGCGGAGAGCTGCTC 60.672 55.000 21.72 21.72 46.76 4.26
631 635 0.952497 CTTTTGCGGAGAGCTGCTCA 60.952 55.000 29.49 8.15 46.76 4.26
632 636 0.952497 TTTTGCGGAGAGCTGCTCAG 60.952 55.000 29.49 20.51 46.76 3.35
633 637 1.820010 TTTGCGGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 46.76 3.27
634 638 1.611474 TTGCGGAGAGCTGCTCAGAT 61.611 55.000 29.49 10.97 46.76 2.90
635 639 1.592131 GCGGAGAGCTGCTCAGATG 60.592 63.158 29.49 17.21 45.81 2.90
636 640 1.815196 CGGAGAGCTGCTCAGATGT 59.185 57.895 29.49 10.20 45.81 3.06
637 641 0.175302 CGGAGAGCTGCTCAGATGTT 59.825 55.000 29.49 9.44 45.81 2.71
638 642 1.405256 CGGAGAGCTGCTCAGATGTTT 60.405 52.381 29.49 8.69 45.81 2.83
639 643 2.159184 CGGAGAGCTGCTCAGATGTTTA 60.159 50.000 29.49 0.00 45.81 2.01
640 644 3.677148 CGGAGAGCTGCTCAGATGTTTAA 60.677 47.826 29.49 0.00 45.81 1.52
641 645 4.256920 GGAGAGCTGCTCAGATGTTTAAA 58.743 43.478 29.49 0.00 45.81 1.52
642 646 4.880696 GGAGAGCTGCTCAGATGTTTAAAT 59.119 41.667 29.49 5.90 45.81 1.40
643 647 5.220815 GGAGAGCTGCTCAGATGTTTAAATG 60.221 44.000 29.49 0.00 45.81 2.32
644 648 5.494724 AGAGCTGCTCAGATGTTTAAATGA 58.505 37.500 29.49 0.00 32.06 2.57
645 649 5.585445 AGAGCTGCTCAGATGTTTAAATGAG 59.415 40.000 29.49 10.80 41.68 2.90
646 650 5.251764 AGCTGCTCAGATGTTTAAATGAGT 58.748 37.500 14.81 0.00 41.00 3.41
647 651 5.709164 AGCTGCTCAGATGTTTAAATGAGTT 59.291 36.000 14.81 1.29 41.00 3.01
648 652 5.798934 GCTGCTCAGATGTTTAAATGAGTTG 59.201 40.000 14.81 10.33 41.00 3.16
649 653 6.348786 GCTGCTCAGATGTTTAAATGAGTTGA 60.349 38.462 14.81 5.69 41.00 3.18
650 654 7.509141 TGCTCAGATGTTTAAATGAGTTGAA 57.491 32.000 14.81 1.27 41.00 2.69
651 655 7.939782 TGCTCAGATGTTTAAATGAGTTGAAA 58.060 30.769 14.81 0.00 41.00 2.69
652 656 8.412456 TGCTCAGATGTTTAAATGAGTTGAAAA 58.588 29.630 14.81 0.00 41.00 2.29
670 674 6.246420 TGAAAACTAAAGCAGATCTCAAGC 57.754 37.500 0.00 0.00 0.00 4.01
671 675 5.764686 TGAAAACTAAAGCAGATCTCAAGCA 59.235 36.000 6.33 0.00 0.00 3.91
672 676 6.432162 TGAAAACTAAAGCAGATCTCAAGCAT 59.568 34.615 6.33 0.00 0.00 3.79
673 677 6.434018 AAACTAAAGCAGATCTCAAGCATC 57.566 37.500 6.33 0.00 0.00 3.91
674 678 5.095145 ACTAAAGCAGATCTCAAGCATCA 57.905 39.130 6.33 0.00 0.00 3.07
675 679 5.494724 ACTAAAGCAGATCTCAAGCATCAA 58.505 37.500 6.33 0.00 0.00 2.57
676 680 6.120905 ACTAAAGCAGATCTCAAGCATCAAT 58.879 36.000 6.33 0.00 0.00 2.57
677 681 5.916661 AAAGCAGATCTCAAGCATCAATT 57.083 34.783 6.33 0.00 0.00 2.32
678 682 5.916661 AAGCAGATCTCAAGCATCAATTT 57.083 34.783 6.33 0.00 0.00 1.82
679 683 7.400599 AAAGCAGATCTCAAGCATCAATTTA 57.599 32.000 6.33 0.00 0.00 1.40
680 684 7.584122 AAGCAGATCTCAAGCATCAATTTAT 57.416 32.000 6.33 0.00 0.00 1.40
681 685 7.204496 AGCAGATCTCAAGCATCAATTTATC 57.796 36.000 6.33 0.00 0.00 1.75
682 686 6.999272 AGCAGATCTCAAGCATCAATTTATCT 59.001 34.615 6.33 0.00 0.00 1.98
683 687 8.155510 AGCAGATCTCAAGCATCAATTTATCTA 58.844 33.333 6.33 0.00 0.00 1.98
684 688 8.229137 GCAGATCTCAAGCATCAATTTATCTAC 58.771 37.037 0.00 0.00 0.00 2.59
685 689 8.719648 CAGATCTCAAGCATCAATTTATCTACC 58.280 37.037 0.00 0.00 0.00 3.18
686 690 8.435187 AGATCTCAAGCATCAATTTATCTACCA 58.565 33.333 0.00 0.00 0.00 3.25
687 691 9.228949 GATCTCAAGCATCAATTTATCTACCAT 57.771 33.333 0.00 0.00 0.00 3.55
689 693 9.494271 TCTCAAGCATCAATTTATCTACCATAC 57.506 33.333 0.00 0.00 0.00 2.39
690 694 8.310406 TCAAGCATCAATTTATCTACCATACG 57.690 34.615 0.00 0.00 0.00 3.06
691 695 7.387673 TCAAGCATCAATTTATCTACCATACGG 59.612 37.037 0.00 0.00 38.77 4.02
692 696 7.004555 AGCATCAATTTATCTACCATACGGA 57.995 36.000 0.00 0.00 35.59 4.69
693 697 7.450074 AGCATCAATTTATCTACCATACGGAA 58.550 34.615 0.00 0.00 35.59 4.30
694 698 7.936847 AGCATCAATTTATCTACCATACGGAAA 59.063 33.333 0.00 0.00 35.59 3.13
695 699 8.564574 GCATCAATTTATCTACCATACGGAAAA 58.435 33.333 0.00 0.00 35.59 2.29
736 740 8.690840 CGGTATTTGTTTTGATTCTTTTCTGAC 58.309 33.333 0.00 0.00 0.00 3.51
738 742 7.698836 ATTTGTTTTGATTCTTTTCTGACCG 57.301 32.000 0.00 0.00 0.00 4.79
739 743 5.181690 TGTTTTGATTCTTTTCTGACCGG 57.818 39.130 0.00 0.00 0.00 5.28
746 750 1.140052 TCTTTTCTGACCGGTTGCAGA 59.860 47.619 19.26 19.26 39.24 4.26
750 754 0.684535 TCTGACCGGTTGCAGATCAA 59.315 50.000 19.26 0.85 36.31 2.57
751 755 1.278985 TCTGACCGGTTGCAGATCAAT 59.721 47.619 19.26 0.00 36.31 2.57
753 757 1.278985 TGACCGGTTGCAGATCAATCT 59.721 47.619 9.42 0.00 36.99 2.40
763 767 2.787473 AGATCAATCTGGCACCGAAA 57.213 45.000 0.00 0.00 35.42 3.46
764 768 2.359900 AGATCAATCTGGCACCGAAAC 58.640 47.619 0.00 0.00 35.42 2.78
765 769 1.062587 GATCAATCTGGCACCGAAACG 59.937 52.381 0.00 0.00 0.00 3.60
766 770 1.154225 CAATCTGGCACCGAAACGC 60.154 57.895 0.00 0.00 0.00 4.84
787 798 2.358737 CCACGTCAGAGGGTTGCC 60.359 66.667 0.00 0.00 0.00 4.52
789 800 1.541310 CCACGTCAGAGGGTTGCCTA 61.541 60.000 0.00 0.00 0.00 3.93
791 802 1.754803 CACGTCAGAGGGTTGCCTATA 59.245 52.381 0.00 0.00 0.00 1.31
792 803 2.032620 ACGTCAGAGGGTTGCCTATAG 58.967 52.381 0.00 0.00 0.00 1.31
795 806 2.103263 GTCAGAGGGTTGCCTATAGGTG 59.897 54.545 20.10 7.91 37.57 4.00
796 807 1.417890 CAGAGGGTTGCCTATAGGTGG 59.582 57.143 20.10 0.00 37.57 4.61
798 809 1.694696 GAGGGTTGCCTATAGGTGGAG 59.305 57.143 20.10 0.00 37.57 3.86
828 856 7.996098 AATTAAGCAATATTACTGGGCGTAT 57.004 32.000 0.00 0.00 0.00 3.06
829 857 6.795098 TTAAGCAATATTACTGGGCGTATG 57.205 37.500 0.00 0.00 0.00 2.39
830 858 4.617253 AGCAATATTACTGGGCGTATGA 57.383 40.909 0.00 0.00 0.00 2.15
831 859 4.968259 AGCAATATTACTGGGCGTATGAA 58.032 39.130 0.00 0.00 0.00 2.57
833 861 5.238650 AGCAATATTACTGGGCGTATGAAAC 59.761 40.000 0.00 0.00 0.00 2.78
834 862 5.562113 GCAATATTACTGGGCGTATGAAACC 60.562 44.000 0.00 0.00 0.00 3.27
835 863 3.926058 ATTACTGGGCGTATGAAACCT 57.074 42.857 0.00 0.00 0.00 3.50
836 864 2.684001 TACTGGGCGTATGAAACCTG 57.316 50.000 0.00 0.00 0.00 4.00
837 865 0.981183 ACTGGGCGTATGAAACCTGA 59.019 50.000 0.00 0.00 0.00 3.86
838 866 1.066143 ACTGGGCGTATGAAACCTGAG 60.066 52.381 0.00 0.00 0.00 3.35
839 867 0.392461 TGGGCGTATGAAACCTGAGC 60.392 55.000 0.00 0.00 0.00 4.26
840 868 1.429148 GGGCGTATGAAACCTGAGCG 61.429 60.000 0.00 0.00 0.00 5.03
841 869 0.739813 GGCGTATGAAACCTGAGCGT 60.740 55.000 0.00 0.00 0.00 5.07
842 870 1.076332 GCGTATGAAACCTGAGCGTT 58.924 50.000 0.00 0.00 0.00 4.84
843 871 1.463444 GCGTATGAAACCTGAGCGTTT 59.537 47.619 0.00 0.00 38.65 3.60
844 872 2.095919 GCGTATGAAACCTGAGCGTTTT 60.096 45.455 1.62 0.00 36.10 2.43
845 873 3.732943 CGTATGAAACCTGAGCGTTTTC 58.267 45.455 1.62 0.00 36.10 2.29
846 874 3.432252 CGTATGAAACCTGAGCGTTTTCT 59.568 43.478 1.62 0.00 36.10 2.52
847 875 4.084013 CGTATGAAACCTGAGCGTTTTCTT 60.084 41.667 1.62 0.00 36.10 2.52
848 876 4.918810 ATGAAACCTGAGCGTTTTCTTT 57.081 36.364 1.62 0.00 36.10 2.52
849 877 4.287238 TGAAACCTGAGCGTTTTCTTTC 57.713 40.909 1.62 0.00 36.10 2.62
850 878 3.945285 TGAAACCTGAGCGTTTTCTTTCT 59.055 39.130 1.62 0.00 36.10 2.52
851 879 4.398044 TGAAACCTGAGCGTTTTCTTTCTT 59.602 37.500 1.62 0.00 36.10 2.52
852 880 4.983671 AACCTGAGCGTTTTCTTTCTTT 57.016 36.364 0.00 0.00 0.00 2.52
853 881 4.983671 ACCTGAGCGTTTTCTTTCTTTT 57.016 36.364 0.00 0.00 0.00 2.27
854 882 5.324784 ACCTGAGCGTTTTCTTTCTTTTT 57.675 34.783 0.00 0.00 0.00 1.94
887 915 2.992476 ACCTGAGCGGTTATGGAGT 58.008 52.632 8.15 0.00 46.37 3.85
889 917 2.679082 ACCTGAGCGGTTATGGAGTAT 58.321 47.619 8.15 0.00 46.37 2.12
891 919 3.181465 ACCTGAGCGGTTATGGAGTATTG 60.181 47.826 8.15 0.00 46.37 1.90
892 920 2.802816 CTGAGCGGTTATGGAGTATTGC 59.197 50.000 0.00 0.00 0.00 3.56
893 921 2.169561 TGAGCGGTTATGGAGTATTGCA 59.830 45.455 0.00 0.00 0.00 4.08
895 923 3.206150 AGCGGTTATGGAGTATTGCAAG 58.794 45.455 4.94 0.00 0.00 4.01
896 924 2.290641 GCGGTTATGGAGTATTGCAAGG 59.709 50.000 4.94 0.00 0.00 3.61
897 925 2.290641 CGGTTATGGAGTATTGCAAGGC 59.709 50.000 4.94 0.00 0.00 4.35
1599 1699 3.144193 CTCTCCTCCGCCGAGCTT 61.144 66.667 0.00 0.00 34.49 3.74
2094 2197 2.343758 GAGAGTTGCCCGTCTGCA 59.656 61.111 0.00 0.00 40.07 4.41
2219 2327 5.411361 TCCTGTAAGTTTTGATCAACGATGG 59.589 40.000 7.89 3.34 0.00 3.51
2274 2382 8.951787 AAACCAAACAGTTTAATTAACCTTCC 57.048 30.769 0.00 0.00 38.17 3.46
2494 2606 6.044512 AGTCGTGTTTACAGTTTTAGCTTG 57.955 37.500 0.00 0.00 0.00 4.01
2549 2661 2.503331 TGGTGTGTTATGTTCTGCCAG 58.497 47.619 0.00 0.00 0.00 4.85
3005 3183 6.989169 TCTGAGTTACGTTATAGAGTACTCCC 59.011 42.308 19.38 0.00 0.00 4.30
3006 3184 6.893583 TGAGTTACGTTATAGAGTACTCCCT 58.106 40.000 19.38 9.43 0.00 4.20
3007 3185 6.989169 TGAGTTACGTTATAGAGTACTCCCTC 59.011 42.308 19.38 9.17 0.00 4.30
3008 3186 7.135591 AGTTACGTTATAGAGTACTCCCTCT 57.864 40.000 19.38 3.39 44.00 3.69
3009 3187 6.991531 AGTTACGTTATAGAGTACTCCCTCTG 59.008 42.308 19.38 7.99 41.81 3.35
3010 3188 5.370875 ACGTTATAGAGTACTCCCTCTGT 57.629 43.478 19.38 8.60 41.81 3.41
3011 3189 6.491714 ACGTTATAGAGTACTCCCTCTGTA 57.508 41.667 19.38 4.57 41.81 2.74
3012 3190 6.893583 ACGTTATAGAGTACTCCCTCTGTAA 58.106 40.000 19.38 7.05 41.81 2.41
3013 3191 7.341805 ACGTTATAGAGTACTCCCTCTGTAAA 58.658 38.462 19.38 0.82 42.83 2.01
3014 3192 7.281999 ACGTTATAGAGTACTCCCTCTGTAAAC 59.718 40.741 19.38 10.97 42.83 2.01
3015 3193 7.498570 CGTTATAGAGTACTCCCTCTGTAAACT 59.501 40.741 19.38 0.00 42.83 2.66
3016 3194 9.844257 GTTATAGAGTACTCCCTCTGTAAACTA 57.156 37.037 19.38 1.15 42.83 2.24
3026 3204 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3027 3205 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3028 3206 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3029 3207 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3030 3208 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3068 3246 9.784680 TTAGTGATCTAAACGAGTGATCTAAAC 57.215 33.333 0.00 0.00 37.89 2.01
3069 3247 7.827701 AGTGATCTAAACGAGTGATCTAAACA 58.172 34.615 0.00 0.00 37.89 2.83
3070 3248 7.755822 AGTGATCTAAACGAGTGATCTAAACAC 59.244 37.037 0.00 0.00 37.89 3.32
3093 3271 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
3130 3308 4.225573 ACCATGTTTGCATATATTGGGCT 58.774 39.130 0.00 0.00 33.30 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.481568 GCTTCCAAATTCTTGCCAAAGC 59.518 45.455 0.00 0.00 35.65 3.51
3 4 3.731089 TGCTTCCAAATTCTTGCCAAAG 58.269 40.909 0.00 0.00 34.45 2.77
4 5 3.834489 TGCTTCCAAATTCTTGCCAAA 57.166 38.095 0.00 0.00 0.00 3.28
5 6 5.421277 CATATGCTTCCAAATTCTTGCCAA 58.579 37.500 0.00 0.00 0.00 4.52
6 7 4.141892 CCATATGCTTCCAAATTCTTGCCA 60.142 41.667 0.00 0.00 0.00 4.92
7 8 4.141869 ACCATATGCTTCCAAATTCTTGCC 60.142 41.667 0.00 0.00 0.00 4.52
8 9 5.014808 ACCATATGCTTCCAAATTCTTGC 57.985 39.130 0.00 0.00 0.00 4.01
9 10 6.211587 TGACCATATGCTTCCAAATTCTTG 57.788 37.500 0.00 0.00 0.00 3.02
10 11 7.781693 ACTATGACCATATGCTTCCAAATTCTT 59.218 33.333 0.00 0.00 0.00 2.52
11 12 7.293073 ACTATGACCATATGCTTCCAAATTCT 58.707 34.615 0.00 0.00 0.00 2.40
12 13 7.229306 TGACTATGACCATATGCTTCCAAATTC 59.771 37.037 0.00 0.00 0.00 2.17
13 14 7.062322 TGACTATGACCATATGCTTCCAAATT 58.938 34.615 0.00 0.00 0.00 1.82
14 15 6.604171 TGACTATGACCATATGCTTCCAAAT 58.396 36.000 0.00 0.00 0.00 2.32
15 16 6.000246 TGACTATGACCATATGCTTCCAAA 58.000 37.500 0.00 0.00 0.00 3.28
16 17 5.628797 TGACTATGACCATATGCTTCCAA 57.371 39.130 0.00 0.00 0.00 3.53
17 18 5.830799 ATGACTATGACCATATGCTTCCA 57.169 39.130 0.00 0.00 0.00 3.53
18 19 6.940739 ACTATGACTATGACCATATGCTTCC 58.059 40.000 0.00 0.00 0.00 3.46
19 20 7.758980 CAGACTATGACTATGACCATATGCTTC 59.241 40.741 0.00 0.00 0.00 3.86
20 21 7.609960 CAGACTATGACTATGACCATATGCTT 58.390 38.462 0.00 0.00 0.00 3.91
21 22 6.350864 GCAGACTATGACTATGACCATATGCT 60.351 42.308 0.00 0.00 31.36 3.79
22 23 5.809562 GCAGACTATGACTATGACCATATGC 59.190 44.000 0.00 0.00 0.00 3.14
23 24 6.336566 GGCAGACTATGACTATGACCATATG 58.663 44.000 0.00 0.00 32.26 1.78
24 25 5.423610 GGGCAGACTATGACTATGACCATAT 59.576 44.000 0.00 0.00 39.01 1.78
25 26 4.772624 GGGCAGACTATGACTATGACCATA 59.227 45.833 0.00 0.00 39.01 2.74
26 27 3.580458 GGGCAGACTATGACTATGACCAT 59.420 47.826 0.00 0.00 39.01 3.55
27 28 2.965831 GGGCAGACTATGACTATGACCA 59.034 50.000 0.00 0.00 39.01 4.02
28 29 3.235200 AGGGCAGACTATGACTATGACC 58.765 50.000 0.00 0.00 39.52 4.02
29 30 4.557695 CGAAGGGCAGACTATGACTATGAC 60.558 50.000 0.00 0.00 36.99 3.06
30 31 3.570125 CGAAGGGCAGACTATGACTATGA 59.430 47.826 0.00 0.00 36.99 2.15
31 32 3.319405 ACGAAGGGCAGACTATGACTATG 59.681 47.826 0.00 0.00 36.99 2.23
32 33 3.567397 ACGAAGGGCAGACTATGACTAT 58.433 45.455 0.00 0.00 36.99 2.12
33 34 3.014304 ACGAAGGGCAGACTATGACTA 57.986 47.619 0.00 0.00 36.99 2.59
34 35 1.853963 ACGAAGGGCAGACTATGACT 58.146 50.000 0.00 0.00 36.99 3.41
35 36 2.674796 AACGAAGGGCAGACTATGAC 57.325 50.000 0.00 0.00 35.46 3.06
36 37 4.161565 ACATTAACGAAGGGCAGACTATGA 59.838 41.667 0.00 0.00 0.00 2.15
37 38 4.442706 ACATTAACGAAGGGCAGACTATG 58.557 43.478 0.00 0.00 0.00 2.23
38 39 4.755266 ACATTAACGAAGGGCAGACTAT 57.245 40.909 0.00 0.00 0.00 2.12
39 40 5.664294 TTACATTAACGAAGGGCAGACTA 57.336 39.130 0.00 0.00 0.00 2.59
40 41 4.546829 TTACATTAACGAAGGGCAGACT 57.453 40.909 0.00 0.00 0.00 3.24
41 42 5.813080 AATTACATTAACGAAGGGCAGAC 57.187 39.130 0.00 0.00 0.00 3.51
42 43 6.402766 CGAAAATTACATTAACGAAGGGCAGA 60.403 38.462 0.00 0.00 0.00 4.26
43 44 5.737290 CGAAAATTACATTAACGAAGGGCAG 59.263 40.000 0.00 0.00 0.00 4.85
44 45 5.181622 ACGAAAATTACATTAACGAAGGGCA 59.818 36.000 0.00 0.00 0.00 5.36
45 46 5.633927 ACGAAAATTACATTAACGAAGGGC 58.366 37.500 0.00 0.00 0.00 5.19
46 47 8.019094 AGAAACGAAAATTACATTAACGAAGGG 58.981 33.333 0.00 0.00 0.00 3.95
47 48 8.837059 CAGAAACGAAAATTACATTAACGAAGG 58.163 33.333 0.00 0.00 0.00 3.46
48 49 9.377383 ACAGAAACGAAAATTACATTAACGAAG 57.623 29.630 0.00 0.00 0.00 3.79
49 50 9.160576 CACAGAAACGAAAATTACATTAACGAA 57.839 29.630 0.00 0.00 0.00 3.85
50 51 7.799447 CCACAGAAACGAAAATTACATTAACGA 59.201 33.333 0.00 0.00 0.00 3.85
51 52 7.060174 CCCACAGAAACGAAAATTACATTAACG 59.940 37.037 0.00 0.00 0.00 3.18
52 53 7.863877 ACCCACAGAAACGAAAATTACATTAAC 59.136 33.333 0.00 0.00 0.00 2.01
53 54 7.942990 ACCCACAGAAACGAAAATTACATTAA 58.057 30.769 0.00 0.00 0.00 1.40
54 55 7.308710 GGACCCACAGAAACGAAAATTACATTA 60.309 37.037 0.00 0.00 0.00 1.90
55 56 6.399639 ACCCACAGAAACGAAAATTACATT 57.600 33.333 0.00 0.00 0.00 2.71
56 57 5.048294 GGACCCACAGAAACGAAAATTACAT 60.048 40.000 0.00 0.00 0.00 2.29
57 58 4.276431 GGACCCACAGAAACGAAAATTACA 59.724 41.667 0.00 0.00 0.00 2.41
58 59 4.276431 TGGACCCACAGAAACGAAAATTAC 59.724 41.667 0.00 0.00 0.00 1.89
59 60 4.462133 TGGACCCACAGAAACGAAAATTA 58.538 39.130 0.00 0.00 0.00 1.40
60 61 3.292460 TGGACCCACAGAAACGAAAATT 58.708 40.909 0.00 0.00 0.00 1.82
61 62 2.938838 TGGACCCACAGAAACGAAAAT 58.061 42.857 0.00 0.00 0.00 1.82
62 63 2.421751 TGGACCCACAGAAACGAAAA 57.578 45.000 0.00 0.00 0.00 2.29
63 64 2.421751 TTGGACCCACAGAAACGAAA 57.578 45.000 0.00 0.00 0.00 3.46
64 65 2.649531 ATTGGACCCACAGAAACGAA 57.350 45.000 0.00 0.00 0.00 3.85
65 66 2.649531 AATTGGACCCACAGAAACGA 57.350 45.000 0.00 0.00 0.00 3.85
66 67 5.588648 ACATATAATTGGACCCACAGAAACG 59.411 40.000 0.00 0.00 0.00 3.60
67 68 8.514330 TTACATATAATTGGACCCACAGAAAC 57.486 34.615 0.00 0.00 0.00 2.78
68 69 9.707957 AATTACATATAATTGGACCCACAGAAA 57.292 29.630 0.00 0.00 39.16 2.52
144 145 7.271511 TCACAATATTGTTGGCTGAACTTTTT 58.728 30.769 18.50 0.00 39.91 1.94
145 146 6.815089 TCACAATATTGTTGGCTGAACTTTT 58.185 32.000 18.50 0.00 39.91 2.27
146 147 6.403866 TCACAATATTGTTGGCTGAACTTT 57.596 33.333 18.50 0.00 39.91 2.66
147 148 6.594788 ATCACAATATTGTTGGCTGAACTT 57.405 33.333 18.50 0.00 39.91 2.66
148 149 7.201848 CCATATCACAATATTGTTGGCTGAACT 60.202 37.037 18.50 2.11 39.91 3.01
149 150 6.919662 CCATATCACAATATTGTTGGCTGAAC 59.080 38.462 18.50 0.00 39.91 3.18
150 151 6.832900 TCCATATCACAATATTGTTGGCTGAA 59.167 34.615 23.66 10.45 39.91 3.02
151 152 6.363882 TCCATATCACAATATTGTTGGCTGA 58.636 36.000 23.66 16.38 39.91 4.26
152 153 6.638096 TCCATATCACAATATTGTTGGCTG 57.362 37.500 23.66 16.46 39.91 4.85
153 154 6.835488 AGTTCCATATCACAATATTGTTGGCT 59.165 34.615 23.66 16.40 39.91 4.75
154 155 7.042797 AGTTCCATATCACAATATTGTTGGC 57.957 36.000 23.66 14.96 39.91 4.52
163 164 5.716228 TCTTGCCAAAGTTCCATATCACAAT 59.284 36.000 0.00 0.00 34.78 2.71
261 262 2.099062 GTGGCAGCAAAGCGATCG 59.901 61.111 11.69 11.69 34.64 3.69
278 279 6.526674 GGAAGGCGTATTATTGTGTTTCTTTG 59.473 38.462 0.00 0.00 0.00 2.77
308 309 6.682746 TCGGATTGCTTTATTGCTTACAAAA 58.317 32.000 0.00 0.00 39.77 2.44
331 335 1.135402 GCATCCCACACAATTCGGTTC 60.135 52.381 0.00 0.00 0.00 3.62
332 336 0.887933 GCATCCCACACAATTCGGTT 59.112 50.000 0.00 0.00 0.00 4.44
333 337 0.965363 GGCATCCCACACAATTCGGT 60.965 55.000 0.00 0.00 0.00 4.69
343 347 1.337118 TGGAAAAGTTGGCATCCCAC 58.663 50.000 1.80 0.00 41.97 4.61
348 352 2.099405 CCGGTATGGAAAAGTTGGCAT 58.901 47.619 0.00 0.00 42.00 4.40
382 386 4.453480 AGAGGTGAAGGGTTTGATTTGA 57.547 40.909 0.00 0.00 0.00 2.69
383 387 5.509670 GGAAAGAGGTGAAGGGTTTGATTTG 60.510 44.000 0.00 0.00 0.00 2.32
384 388 4.588951 GGAAAGAGGTGAAGGGTTTGATTT 59.411 41.667 0.00 0.00 0.00 2.17
385 389 4.152647 GGAAAGAGGTGAAGGGTTTGATT 58.847 43.478 0.00 0.00 0.00 2.57
386 390 3.500471 GGGAAAGAGGTGAAGGGTTTGAT 60.500 47.826 0.00 0.00 0.00 2.57
387 391 2.158519 GGGAAAGAGGTGAAGGGTTTGA 60.159 50.000 0.00 0.00 0.00 2.69
415 419 6.650807 CGCCATGTGACCAGATTTATATTACT 59.349 38.462 0.00 0.00 0.00 2.24
416 420 6.649141 TCGCCATGTGACCAGATTTATATTAC 59.351 38.462 0.00 0.00 0.00 1.89
417 421 6.764379 TCGCCATGTGACCAGATTTATATTA 58.236 36.000 0.00 0.00 0.00 0.98
418 422 5.620206 TCGCCATGTGACCAGATTTATATT 58.380 37.500 0.00 0.00 0.00 1.28
419 423 5.012046 TCTCGCCATGTGACCAGATTTATAT 59.988 40.000 0.00 0.00 0.00 0.86
420 424 4.343814 TCTCGCCATGTGACCAGATTTATA 59.656 41.667 0.00 0.00 0.00 0.98
421 425 3.134623 TCTCGCCATGTGACCAGATTTAT 59.865 43.478 0.00 0.00 0.00 1.40
429 433 1.933853 GTGTATTCTCGCCATGTGACC 59.066 52.381 0.00 0.00 0.00 4.02
434 438 4.728882 GCTCAAAAGTGTATTCTCGCCATG 60.729 45.833 0.00 0.00 0.00 3.66
437 441 2.096013 GGCTCAAAAGTGTATTCTCGCC 59.904 50.000 0.00 0.00 0.00 5.54
438 442 2.096013 GGGCTCAAAAGTGTATTCTCGC 59.904 50.000 0.00 0.00 0.00 5.03
439 443 3.334691 TGGGCTCAAAAGTGTATTCTCG 58.665 45.455 0.00 0.00 0.00 4.04
440 444 3.691609 CCTGGGCTCAAAAGTGTATTCTC 59.308 47.826 0.00 0.00 0.00 2.87
441 445 3.690460 CCTGGGCTCAAAAGTGTATTCT 58.310 45.455 0.00 0.00 0.00 2.40
442 446 2.164422 GCCTGGGCTCAAAAGTGTATTC 59.836 50.000 4.12 0.00 38.26 1.75
443 447 2.171003 GCCTGGGCTCAAAAGTGTATT 58.829 47.619 4.12 0.00 38.26 1.89
444 448 1.839424 GCCTGGGCTCAAAAGTGTAT 58.161 50.000 4.12 0.00 38.26 2.29
446 450 4.181051 GCCTGGGCTCAAAAGTGT 57.819 55.556 4.12 0.00 38.26 3.55
456 460 2.827642 GTGCATCTGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
457 461 2.513204 CGTGCATCTGAGCCTGGG 60.513 66.667 0.00 0.00 0.00 4.45
458 462 3.200593 GCGTGCATCTGAGCCTGG 61.201 66.667 0.00 0.00 0.00 4.45
459 463 3.200593 GGCGTGCATCTGAGCCTG 61.201 66.667 11.19 0.00 45.67 4.85
475 479 1.635663 ATTTTCTTCGTCAGCGCGGG 61.636 55.000 8.83 1.03 38.14 6.13
476 480 0.165944 AATTTTCTTCGTCAGCGCGG 59.834 50.000 8.83 0.00 38.14 6.46
477 481 1.136363 TGAATTTTCTTCGTCAGCGCG 60.136 47.619 0.00 0.00 38.14 6.86
478 482 2.594529 TGAATTTTCTTCGTCAGCGC 57.405 45.000 0.00 0.00 38.14 5.92
479 483 5.864830 TTTTTGAATTTTCTTCGTCAGCG 57.135 34.783 0.00 0.00 39.92 5.18
537 541 4.570930 TCACGCATCAATTTACTACCACA 58.429 39.130 0.00 0.00 0.00 4.17
542 546 4.439057 GGACCTCACGCATCAATTTACTA 58.561 43.478 0.00 0.00 0.00 1.82
544 548 2.030457 CGGACCTCACGCATCAATTTAC 59.970 50.000 0.00 0.00 0.00 2.01
545 549 2.276201 CGGACCTCACGCATCAATTTA 58.724 47.619 0.00 0.00 0.00 1.40
546 550 1.086696 CGGACCTCACGCATCAATTT 58.913 50.000 0.00 0.00 0.00 1.82
547 551 2.767536 CGGACCTCACGCATCAATT 58.232 52.632 0.00 0.00 0.00 2.32
555 559 1.156736 AAATTGAAGCGGACCTCACG 58.843 50.000 0.00 0.00 0.00 4.35
556 560 2.552315 TGAAAATTGAAGCGGACCTCAC 59.448 45.455 0.00 0.00 0.00 3.51
557 561 2.857483 TGAAAATTGAAGCGGACCTCA 58.143 42.857 0.00 0.00 0.00 3.86
558 562 3.253432 AGTTGAAAATTGAAGCGGACCTC 59.747 43.478 0.00 0.00 0.00 3.85
559 563 3.222603 AGTTGAAAATTGAAGCGGACCT 58.777 40.909 0.00 0.00 0.00 3.85
560 564 3.643159 AGTTGAAAATTGAAGCGGACC 57.357 42.857 0.00 0.00 0.00 4.46
561 565 6.032460 CGAATAAGTTGAAAATTGAAGCGGAC 59.968 38.462 0.00 0.00 0.00 4.79
562 566 6.083630 CGAATAAGTTGAAAATTGAAGCGGA 58.916 36.000 0.00 0.00 0.00 5.54
563 567 5.856455 ACGAATAAGTTGAAAATTGAAGCGG 59.144 36.000 0.00 0.00 0.00 5.52
564 568 6.665055 GCACGAATAAGTTGAAAATTGAAGCG 60.665 38.462 0.00 0.00 0.00 4.68
565 569 6.143758 TGCACGAATAAGTTGAAAATTGAAGC 59.856 34.615 0.00 0.00 0.00 3.86
566 570 7.379529 AGTGCACGAATAAGTTGAAAATTGAAG 59.620 33.333 12.01 0.00 0.00 3.02
567 571 7.167302 CAGTGCACGAATAAGTTGAAAATTGAA 59.833 33.333 12.01 0.00 0.00 2.69
568 572 6.636447 CAGTGCACGAATAAGTTGAAAATTGA 59.364 34.615 12.01 0.00 0.00 2.57
569 573 6.614162 GCAGTGCACGAATAAGTTGAAAATTG 60.614 38.462 11.09 0.00 0.00 2.32
570 574 5.402270 GCAGTGCACGAATAAGTTGAAAATT 59.598 36.000 11.09 0.00 0.00 1.82
571 575 4.917415 GCAGTGCACGAATAAGTTGAAAAT 59.083 37.500 11.09 0.00 0.00 1.82
572 576 4.036262 AGCAGTGCACGAATAAGTTGAAAA 59.964 37.500 19.20 0.00 0.00 2.29
573 577 3.563808 AGCAGTGCACGAATAAGTTGAAA 59.436 39.130 19.20 0.00 0.00 2.69
574 578 3.138304 AGCAGTGCACGAATAAGTTGAA 58.862 40.909 19.20 0.00 0.00 2.69
575 579 2.736721 GAGCAGTGCACGAATAAGTTGA 59.263 45.455 19.20 0.00 0.00 3.18
576 580 2.738846 AGAGCAGTGCACGAATAAGTTG 59.261 45.455 19.20 2.43 0.00 3.16
577 581 2.738846 CAGAGCAGTGCACGAATAAGTT 59.261 45.455 19.20 0.00 0.00 2.66
578 582 2.029020 TCAGAGCAGTGCACGAATAAGT 60.029 45.455 19.20 0.00 0.00 2.24
579 583 2.610433 TCAGAGCAGTGCACGAATAAG 58.390 47.619 19.20 2.08 0.00 1.73
580 584 2.741759 TCAGAGCAGTGCACGAATAA 57.258 45.000 19.20 0.00 0.00 1.40
581 585 2.967599 ATCAGAGCAGTGCACGAATA 57.032 45.000 19.20 0.00 0.00 1.75
582 586 2.005451 GAATCAGAGCAGTGCACGAAT 58.995 47.619 19.20 7.35 0.00 3.34
583 587 1.432514 GAATCAGAGCAGTGCACGAA 58.567 50.000 19.20 5.12 0.00 3.85
584 588 0.733909 CGAATCAGAGCAGTGCACGA 60.734 55.000 19.20 12.97 0.00 4.35
585 589 0.733909 TCGAATCAGAGCAGTGCACG 60.734 55.000 19.20 7.77 0.00 5.34
586 590 1.649664 ATCGAATCAGAGCAGTGCAC 58.350 50.000 19.20 9.40 0.00 4.57
587 591 2.391616 AATCGAATCAGAGCAGTGCA 57.608 45.000 19.20 0.00 0.00 4.57
588 592 2.417933 ACAAATCGAATCAGAGCAGTGC 59.582 45.455 7.13 7.13 0.00 4.40
589 593 3.931468 AGACAAATCGAATCAGAGCAGTG 59.069 43.478 0.00 0.00 0.00 3.66
590 594 4.081752 AGAGACAAATCGAATCAGAGCAGT 60.082 41.667 0.00 0.00 0.00 4.40
591 595 4.431809 AGAGACAAATCGAATCAGAGCAG 58.568 43.478 0.00 0.00 0.00 4.24
592 596 4.462508 AGAGACAAATCGAATCAGAGCA 57.537 40.909 0.00 0.00 0.00 4.26
593 597 5.793026 AAAGAGACAAATCGAATCAGAGC 57.207 39.130 0.00 0.00 0.00 4.09
594 598 6.020372 GCAAAAGAGACAAATCGAATCAGAG 58.980 40.000 0.00 0.00 0.00 3.35
595 599 5.389830 CGCAAAAGAGACAAATCGAATCAGA 60.390 40.000 0.00 0.00 0.00 3.27
596 600 4.785055 CGCAAAAGAGACAAATCGAATCAG 59.215 41.667 0.00 0.00 0.00 2.90
597 601 4.378356 CCGCAAAAGAGACAAATCGAATCA 60.378 41.667 0.00 0.00 0.00 2.57
598 602 4.091424 CCGCAAAAGAGACAAATCGAATC 58.909 43.478 0.00 0.00 0.00 2.52
599 603 3.751175 TCCGCAAAAGAGACAAATCGAAT 59.249 39.130 0.00 0.00 0.00 3.34
600 604 3.135225 TCCGCAAAAGAGACAAATCGAA 58.865 40.909 0.00 0.00 0.00 3.71
601 605 2.736721 CTCCGCAAAAGAGACAAATCGA 59.263 45.455 0.00 0.00 32.86 3.59
602 606 2.736721 TCTCCGCAAAAGAGACAAATCG 59.263 45.455 0.00 0.00 35.46 3.34
603 607 3.425492 GCTCTCCGCAAAAGAGACAAATC 60.425 47.826 10.33 0.00 42.39 2.17
604 608 2.485814 GCTCTCCGCAAAAGAGACAAAT 59.514 45.455 10.33 0.00 42.39 2.32
605 609 1.873591 GCTCTCCGCAAAAGAGACAAA 59.126 47.619 10.33 0.00 42.39 2.83
606 610 1.070758 AGCTCTCCGCAAAAGAGACAA 59.929 47.619 10.33 0.00 42.39 3.18
607 611 0.681733 AGCTCTCCGCAAAAGAGACA 59.318 50.000 10.33 0.00 42.39 3.41
608 612 1.074752 CAGCTCTCCGCAAAAGAGAC 58.925 55.000 10.33 3.39 42.39 3.36
609 613 0.671781 GCAGCTCTCCGCAAAAGAGA 60.672 55.000 10.33 2.62 42.39 3.10
610 614 0.673022 AGCAGCTCTCCGCAAAAGAG 60.673 55.000 0.00 3.28 42.62 2.85
611 615 0.671781 GAGCAGCTCTCCGCAAAAGA 60.672 55.000 15.78 0.00 42.61 2.52
612 616 0.952497 TGAGCAGCTCTCCGCAAAAG 60.952 55.000 23.15 0.00 41.18 2.27
613 617 0.952497 CTGAGCAGCTCTCCGCAAAA 60.952 55.000 23.15 0.00 41.18 2.44
614 618 1.375140 CTGAGCAGCTCTCCGCAAA 60.375 57.895 23.15 0.00 41.18 3.68
615 619 1.611474 ATCTGAGCAGCTCTCCGCAA 61.611 55.000 23.15 0.68 41.18 4.85
616 620 2.056815 ATCTGAGCAGCTCTCCGCA 61.057 57.895 23.15 2.15 41.18 5.69
617 621 1.592131 CATCTGAGCAGCTCTCCGC 60.592 63.158 23.15 0.00 41.18 5.54
618 622 0.175302 AACATCTGAGCAGCTCTCCG 59.825 55.000 23.15 11.54 41.18 4.63
619 623 2.399916 AAACATCTGAGCAGCTCTCC 57.600 50.000 23.15 0.00 41.18 3.71
620 624 5.583854 TCATTTAAACATCTGAGCAGCTCTC 59.416 40.000 23.15 0.00 42.23 3.20
621 625 5.494724 TCATTTAAACATCTGAGCAGCTCT 58.505 37.500 23.15 3.66 0.00 4.09
622 626 5.353678 ACTCATTTAAACATCTGAGCAGCTC 59.646 40.000 16.21 16.21 38.94 4.09
623 627 5.251764 ACTCATTTAAACATCTGAGCAGCT 58.748 37.500 13.87 0.00 38.94 4.24
624 628 5.557891 ACTCATTTAAACATCTGAGCAGC 57.442 39.130 13.87 0.00 38.94 5.25
625 629 7.137490 TCAACTCATTTAAACATCTGAGCAG 57.863 36.000 13.87 8.57 38.94 4.24
626 630 7.509141 TTCAACTCATTTAAACATCTGAGCA 57.491 32.000 13.87 0.15 38.94 4.26
627 631 8.694394 GTTTTCAACTCATTTAAACATCTGAGC 58.306 33.333 13.87 0.00 38.94 4.26
628 632 9.956720 AGTTTTCAACTCATTTAAACATCTGAG 57.043 29.630 12.80 12.80 37.02 3.35
634 638 9.862371 TGCTTTAGTTTTCAACTCATTTAAACA 57.138 25.926 0.00 0.00 41.77 2.83
639 643 8.854117 AGATCTGCTTTAGTTTTCAACTCATTT 58.146 29.630 0.00 0.00 41.77 2.32
640 644 8.401490 AGATCTGCTTTAGTTTTCAACTCATT 57.599 30.769 0.00 0.00 41.77 2.57
641 645 7.663081 TGAGATCTGCTTTAGTTTTCAACTCAT 59.337 33.333 0.00 0.00 41.77 2.90
642 646 6.992123 TGAGATCTGCTTTAGTTTTCAACTCA 59.008 34.615 0.00 0.00 41.77 3.41
643 647 7.426929 TGAGATCTGCTTTAGTTTTCAACTC 57.573 36.000 0.00 0.00 41.77 3.01
644 648 7.521261 GCTTGAGATCTGCTTTAGTTTTCAACT 60.521 37.037 0.00 0.00 45.40 3.16
645 649 6.580416 GCTTGAGATCTGCTTTAGTTTTCAAC 59.420 38.462 0.00 0.00 0.00 3.18
646 650 6.262944 TGCTTGAGATCTGCTTTAGTTTTCAA 59.737 34.615 0.00 0.00 0.00 2.69
647 651 5.764686 TGCTTGAGATCTGCTTTAGTTTTCA 59.235 36.000 0.00 0.00 0.00 2.69
648 652 6.246420 TGCTTGAGATCTGCTTTAGTTTTC 57.754 37.500 0.00 0.00 0.00 2.29
649 653 6.432162 TGATGCTTGAGATCTGCTTTAGTTTT 59.568 34.615 0.00 0.00 0.00 2.43
650 654 5.942236 TGATGCTTGAGATCTGCTTTAGTTT 59.058 36.000 0.00 0.00 0.00 2.66
651 655 5.494724 TGATGCTTGAGATCTGCTTTAGTT 58.505 37.500 0.00 0.00 0.00 2.24
652 656 5.095145 TGATGCTTGAGATCTGCTTTAGT 57.905 39.130 0.00 0.00 0.00 2.24
653 657 6.621316 ATTGATGCTTGAGATCTGCTTTAG 57.379 37.500 0.00 0.00 0.00 1.85
654 658 7.400599 AAATTGATGCTTGAGATCTGCTTTA 57.599 32.000 0.00 0.00 0.00 1.85
655 659 5.916661 AATTGATGCTTGAGATCTGCTTT 57.083 34.783 0.00 0.00 0.00 3.51
656 660 5.916661 AAATTGATGCTTGAGATCTGCTT 57.083 34.783 0.00 0.00 0.00 3.91
657 661 6.999272 AGATAAATTGATGCTTGAGATCTGCT 59.001 34.615 0.00 0.00 0.00 4.24
658 662 7.204496 AGATAAATTGATGCTTGAGATCTGC 57.796 36.000 0.00 0.00 0.00 4.26
659 663 8.719648 GGTAGATAAATTGATGCTTGAGATCTG 58.280 37.037 0.00 0.00 0.00 2.90
660 664 8.435187 TGGTAGATAAATTGATGCTTGAGATCT 58.565 33.333 0.00 0.00 0.00 2.75
661 665 8.613060 TGGTAGATAAATTGATGCTTGAGATC 57.387 34.615 0.00 0.00 0.00 2.75
663 667 9.494271 GTATGGTAGATAAATTGATGCTTGAGA 57.506 33.333 0.00 0.00 0.00 3.27
664 668 8.438513 CGTATGGTAGATAAATTGATGCTTGAG 58.561 37.037 0.00 0.00 0.00 3.02
665 669 7.387673 CCGTATGGTAGATAAATTGATGCTTGA 59.612 37.037 0.00 0.00 0.00 3.02
666 670 7.387673 TCCGTATGGTAGATAAATTGATGCTTG 59.612 37.037 0.00 0.00 36.30 4.01
667 671 7.450074 TCCGTATGGTAGATAAATTGATGCTT 58.550 34.615 0.00 0.00 36.30 3.91
668 672 7.004555 TCCGTATGGTAGATAAATTGATGCT 57.995 36.000 0.00 0.00 36.30 3.79
669 673 7.667043 TTCCGTATGGTAGATAAATTGATGC 57.333 36.000 0.00 0.00 36.30 3.91
708 712 9.410556 CAGAAAAGAATCAAAACAAATACCGAT 57.589 29.630 0.00 0.00 0.00 4.18
709 713 8.625651 TCAGAAAAGAATCAAAACAAATACCGA 58.374 29.630 0.00 0.00 0.00 4.69
710 714 8.690840 GTCAGAAAAGAATCAAAACAAATACCG 58.309 33.333 0.00 0.00 0.00 4.02
711 715 8.978539 GGTCAGAAAAGAATCAAAACAAATACC 58.021 33.333 0.00 0.00 0.00 2.73
712 716 8.690840 CGGTCAGAAAAGAATCAAAACAAATAC 58.309 33.333 0.00 0.00 0.00 1.89
713 717 7.865385 CCGGTCAGAAAAGAATCAAAACAAATA 59.135 33.333 0.00 0.00 0.00 1.40
714 718 6.701400 CCGGTCAGAAAAGAATCAAAACAAAT 59.299 34.615 0.00 0.00 0.00 2.32
715 719 6.039616 CCGGTCAGAAAAGAATCAAAACAAA 58.960 36.000 0.00 0.00 0.00 2.83
716 720 5.126384 ACCGGTCAGAAAAGAATCAAAACAA 59.874 36.000 0.00 0.00 0.00 2.83
717 721 4.642885 ACCGGTCAGAAAAGAATCAAAACA 59.357 37.500 0.00 0.00 0.00 2.83
718 722 5.183014 ACCGGTCAGAAAAGAATCAAAAC 57.817 39.130 0.00 0.00 0.00 2.43
719 723 5.587289 CAACCGGTCAGAAAAGAATCAAAA 58.413 37.500 8.04 0.00 0.00 2.44
722 726 2.552315 GCAACCGGTCAGAAAAGAATCA 59.448 45.455 8.04 0.00 0.00 2.57
726 730 1.140052 TCTGCAACCGGTCAGAAAAGA 59.860 47.619 20.50 10.08 36.50 2.52
727 731 1.593196 TCTGCAACCGGTCAGAAAAG 58.407 50.000 20.50 8.11 36.50 2.27
728 732 2.151202 GATCTGCAACCGGTCAGAAAA 58.849 47.619 24.92 7.65 41.96 2.29
729 733 1.071542 TGATCTGCAACCGGTCAGAAA 59.928 47.619 24.92 15.78 41.96 2.52
731 735 0.684535 TTGATCTGCAACCGGTCAGA 59.315 50.000 23.77 23.77 42.72 3.27
746 750 1.086696 CGTTTCGGTGCCAGATTGAT 58.913 50.000 0.00 0.00 0.00 2.57
767 771 4.003788 AACCCTCTGACGTGGGCG 62.004 66.667 8.56 0.00 45.87 6.13
768 772 2.358737 CAACCCTCTGACGTGGGC 60.359 66.667 8.56 0.00 45.87 5.36
770 774 1.541310 TAGGCAACCCTCTGACGTGG 61.541 60.000 0.00 0.00 41.75 4.94
771 775 0.537188 ATAGGCAACCCTCTGACGTG 59.463 55.000 0.00 0.00 41.75 4.49
773 777 1.341531 CCTATAGGCAACCCTCTGACG 59.658 57.143 5.67 0.00 41.75 4.35
778 789 1.694696 CTCCACCTATAGGCAACCCTC 59.305 57.143 19.25 0.00 41.75 4.30
830 858 4.983671 AAGAAAGAAAACGCTCAGGTTT 57.016 36.364 0.00 0.00 43.58 3.27
831 859 4.983671 AAAGAAAGAAAACGCTCAGGTT 57.016 36.364 0.00 0.00 0.00 3.50
857 885 3.259064 CCGCTCAGGTCGATTCTAAAAA 58.741 45.455 0.00 0.00 34.51 1.94
858 886 2.888594 CCGCTCAGGTCGATTCTAAAA 58.111 47.619 0.00 0.00 34.51 1.52
859 887 2.579207 CCGCTCAGGTCGATTCTAAA 57.421 50.000 0.00 0.00 34.51 1.85
892 920 2.341176 GGCACTTTGGCAGCCTTG 59.659 61.111 14.15 5.80 44.92 3.61
960 1036 0.039180 GGACGGGGAAAGGGATGTTT 59.961 55.000 0.00 0.00 0.00 2.83
1404 1501 4.200283 GCGAGCTCCTGGGACGAG 62.200 72.222 8.47 0.00 0.00 4.18
2094 2197 7.017498 CGCTATCGTGTAAGGATATATCAGT 57.983 40.000 14.60 4.11 42.17 3.41
2192 2300 6.464222 TCGTTGATCAAAACTTACAGGAGAT 58.536 36.000 10.35 0.00 0.00 2.75
2219 2327 9.341899 CATTTCTTTATAACCAGTTAAGCACAC 57.658 33.333 0.00 0.00 0.00 3.82
2274 2382 5.717038 AACAAAGAAAGTTTTGAATGGCG 57.283 34.783 5.58 0.00 39.79 5.69
2474 2585 8.440059 TGATATCAAGCTAAAACTGTAAACACG 58.560 33.333 1.98 0.00 0.00 4.49
2494 2606 8.344831 TGCAAGCACAACTAATTACATGATATC 58.655 33.333 0.00 0.00 0.00 1.63
2549 2661 7.571983 GCAATAGAGTGACCATACACATAATGC 60.572 40.741 0.00 0.00 42.45 3.56
3042 3220 9.784680 GTTTAGATCACTCGTTTAGATCACTAA 57.215 33.333 0.00 0.00 40.39 2.24
3043 3221 8.953313 TGTTTAGATCACTCGTTTAGATCACTA 58.047 33.333 0.00 0.00 40.39 2.74
3044 3222 7.755822 GTGTTTAGATCACTCGTTTAGATCACT 59.244 37.037 0.00 0.00 40.39 3.41
3045 3223 7.755822 AGTGTTTAGATCACTCGTTTAGATCAC 59.244 37.037 0.00 0.00 41.52 3.06
3046 3224 7.827701 AGTGTTTAGATCACTCGTTTAGATCA 58.172 34.615 0.00 0.00 41.52 2.92
3067 3245 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
3069 3247 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3075 3253 9.490083 ACAAGTACTCCCTCTGTAAACTAATAT 57.510 33.333 0.00 0.00 0.00 1.28
3076 3254 8.890410 ACAAGTACTCCCTCTGTAAACTAATA 57.110 34.615 0.00 0.00 0.00 0.98
3077 3255 7.674772 AGACAAGTACTCCCTCTGTAAACTAAT 59.325 37.037 0.00 0.00 0.00 1.73
3078 3256 7.008941 AGACAAGTACTCCCTCTGTAAACTAA 58.991 38.462 0.00 0.00 0.00 2.24
3079 3257 6.550163 AGACAAGTACTCCCTCTGTAAACTA 58.450 40.000 0.00 0.00 0.00 2.24
3080 3258 5.395611 AGACAAGTACTCCCTCTGTAAACT 58.604 41.667 0.00 0.00 0.00 2.66
3081 3259 5.725325 AGACAAGTACTCCCTCTGTAAAC 57.275 43.478 0.00 0.00 0.00 2.01
3082 3260 6.553852 AGAAAGACAAGTACTCCCTCTGTAAA 59.446 38.462 0.00 0.00 0.00 2.01
3083 3261 6.075984 AGAAAGACAAGTACTCCCTCTGTAA 58.924 40.000 0.00 0.00 0.00 2.41
3084 3262 5.642165 AGAAAGACAAGTACTCCCTCTGTA 58.358 41.667 0.00 0.00 0.00 2.74
3085 3263 4.484912 AGAAAGACAAGTACTCCCTCTGT 58.515 43.478 0.00 0.00 0.00 3.41
3086 3264 5.105675 GGTAGAAAGACAAGTACTCCCTCTG 60.106 48.000 0.00 0.00 0.00 3.35
3087 3265 5.018149 GGTAGAAAGACAAGTACTCCCTCT 58.982 45.833 0.00 0.00 0.00 3.69
3088 3266 4.771054 TGGTAGAAAGACAAGTACTCCCTC 59.229 45.833 0.00 0.00 0.00 4.30
3089 3267 4.748701 TGGTAGAAAGACAAGTACTCCCT 58.251 43.478 0.00 0.00 0.00 4.20
3090 3268 5.046520 ACATGGTAGAAAGACAAGTACTCCC 60.047 44.000 0.00 0.00 0.00 4.30
3091 3269 6.038997 ACATGGTAGAAAGACAAGTACTCC 57.961 41.667 0.00 0.00 0.00 3.85
3092 3270 7.571428 GCAAACATGGTAGAAAGACAAGTACTC 60.571 40.741 0.00 0.00 0.00 2.59
3093 3271 6.204882 GCAAACATGGTAGAAAGACAAGTACT 59.795 38.462 0.00 0.00 0.00 2.73
3130 3308 4.963318 ATCTGAACCAGAACTGAAGTCA 57.037 40.909 3.19 3.38 44.04 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.