Multiple sequence alignment - TraesCS1B01G111500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G111500 chr1B 100.000 3158 0 0 1 3158 129514623 129511466 0.000000e+00 5832.0
1 TraesCS1B01G111500 chr1B 84.126 1241 167 23 995 2221 129553336 129552112 0.000000e+00 1173.0
2 TraesCS1B01G111500 chr1B 89.752 322 30 3 2615 2934 129551656 129551336 2.930000e-110 409.0
3 TraesCS1B01G111500 chr1B 75.300 834 172 28 1349 2165 129177231 129176415 4.980000e-98 368.0
4 TraesCS1B01G111500 chr1B 85.337 341 32 12 2229 2557 129551986 129551652 1.400000e-88 337.0
5 TraesCS1B01G111500 chr1B 78.140 430 75 13 1003 1430 129177640 129177228 4.040000e-64 255.0
6 TraesCS1B01G111500 chr1B 90.751 173 16 0 240 412 336774412 336774584 6.810000e-57 231.0
7 TraesCS1B01G111500 chr1B 91.304 115 10 0 470 584 661509420 661509306 1.170000e-34 158.0
8 TraesCS1B01G111500 chr1D 91.796 1548 105 14 688 2232 79078857 79077329 0.000000e+00 2135.0
9 TraesCS1B01G111500 chr1D 91.429 910 60 12 2229 3125 79077215 79076311 0.000000e+00 1232.0
10 TraesCS1B01G111500 chr1D 81.661 1276 177 34 969 2232 79088536 79087306 0.000000e+00 1007.0
11 TraesCS1B01G111500 chr1D 86.160 513 49 8 2615 3107 79086865 79086355 4.640000e-148 534.0
12 TraesCS1B01G111500 chr1D 87.059 340 27 11 2229 2557 79087194 79086861 4.980000e-98 368.0
13 TraesCS1B01G111500 chr1D 78.404 426 74 15 1014 1430 79051030 79050614 8.690000e-66 261.0
14 TraesCS1B01G111500 chr1D 80.412 194 33 5 1 192 293595288 293595098 3.280000e-30 143.0
15 TraesCS1B01G111500 chr1A 94.686 1242 61 2 991 2232 96445800 96447036 0.000000e+00 1923.0
16 TraesCS1B01G111500 chr1A 82.848 1271 186 21 979 2231 96438076 96439332 0.000000e+00 1110.0
17 TraesCS1B01G111500 chr1A 90.173 865 64 9 2229 3081 96447150 96448005 0.000000e+00 1107.0
18 TraesCS1B01G111500 chr1A 85.386 479 45 13 2615 3069 96439775 96440252 1.030000e-129 473.0
19 TraesCS1B01G111500 chr1A 88.820 322 16 13 688 994 96443093 96443409 8.270000e-101 377.0
20 TraesCS1B01G111500 chr1A 86.510 341 28 12 2229 2557 96439445 96439779 2.990000e-95 359.0
21 TraesCS1B01G111500 chr1A 78.291 433 76 13 1008 1430 96453318 96453742 2.420000e-66 263.0
22 TraesCS1B01G111500 chr2A 80.911 461 72 7 1 458 541778552 541778105 1.800000e-92 350.0
23 TraesCS1B01G111500 chr3A 87.083 240 27 2 1 237 239775527 239775289 5.190000e-68 268.0
24 TraesCS1B01G111500 chr3B 90.503 179 16 1 240 417 107961847 107961669 5.270000e-58 235.0
25 TraesCS1B01G111500 chr3B 90.286 175 17 0 240 414 672963440 672963614 2.450000e-56 230.0
26 TraesCS1B01G111500 chr3B 88.950 181 20 0 234 414 655849414 655849594 1.140000e-54 224.0
27 TraesCS1B01G111500 chr3B 90.551 127 11 1 465 590 623661398 623661272 1.950000e-37 167.0
28 TraesCS1B01G111500 chr3B 89.256 121 12 1 471 591 40198726 40198607 1.960000e-32 150.0
29 TraesCS1B01G111500 chr5D 90.341 176 16 1 240 414 368995524 368995349 2.450000e-56 230.0
30 TraesCS1B01G111500 chr5D 96.774 31 1 0 1078 1108 244209859 244209829 6.000000e-03 52.8
31 TraesCS1B01G111500 chr2D 90.286 175 17 0 239 413 537190493 537190319 2.450000e-56 230.0
32 TraesCS1B01G111500 chr4A 87.562 201 19 5 241 438 582530141 582529944 8.810000e-56 228.0
33 TraesCS1B01G111500 chr4A 81.481 162 22 5 32 192 164488888 164488734 3.310000e-25 126.0
34 TraesCS1B01G111500 chr4A 82.667 150 19 7 55 201 678013739 678013594 3.310000e-25 126.0
35 TraesCS1B01G111500 chr4B 89.071 183 18 2 236 416 327862137 327861955 3.170000e-55 226.0
36 TraesCS1B01G111500 chr4B 92.661 109 8 0 470 578 79997266 79997158 1.170000e-34 158.0
37 TraesCS1B01G111500 chr4D 82.979 188 28 3 29 213 487215042 487215228 1.950000e-37 167.0
38 TraesCS1B01G111500 chr6B 92.241 116 9 0 470 585 558675058 558674943 7.010000e-37 165.0
39 TraesCS1B01G111500 chr6B 93.458 107 7 0 471 577 525565719 525565613 3.260000e-35 159.0
40 TraesCS1B01G111500 chr2B 93.636 110 7 0 471 580 46570301 46570192 7.010000e-37 165.0
41 TraesCS1B01G111500 chrUn 93.578 109 7 0 470 578 27987412 27987520 2.520000e-36 163.0
42 TraesCS1B01G111500 chr5B 93.519 108 7 0 470 577 511839788 511839681 9.060000e-36 161.0
43 TraesCS1B01G111500 chr5A 81.183 186 27 7 33 213 572700262 572700080 3.280000e-30 143.0
44 TraesCS1B01G111500 chr5A 76.371 237 51 3 4 237 546232694 546232928 4.280000e-24 122.0
45 TraesCS1B01G111500 chr7A 78.155 206 40 5 29 232 112242665 112242867 3.310000e-25 126.0
46 TraesCS1B01G111500 chr7A 77.720 193 40 2 1 192 66175276 66175086 7.160000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G111500 chr1B 129511466 129514623 3157 True 5832.000000 5832 100.0000 1 3158 1 chr1B.!!$R1 3157
1 TraesCS1B01G111500 chr1B 129551336 129553336 2000 True 639.666667 1173 86.4050 995 2934 3 chr1B.!!$R4 1939
2 TraesCS1B01G111500 chr1B 129176415 129177640 1225 True 311.500000 368 76.7200 1003 2165 2 chr1B.!!$R3 1162
3 TraesCS1B01G111500 chr1D 79076311 79078857 2546 True 1683.500000 2135 91.6125 688 3125 2 chr1D.!!$R3 2437
4 TraesCS1B01G111500 chr1D 79086355 79088536 2181 True 636.333333 1007 84.9600 969 3107 3 chr1D.!!$R4 2138
5 TraesCS1B01G111500 chr1A 96438076 96448005 9929 False 891.500000 1923 88.0705 688 3081 6 chr1A.!!$F2 2393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 472 0.033503 TCCTCCGTGGATGACTGCTA 60.034 55.0 0.0 0.0 40.56 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 9266 0.312102 TCGCGGCTATCATGTCTCAG 59.688 55.0 6.13 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.975439 GTAAAGACCATGATAAGTTACATACCG 58.025 37.037 0.00 0.00 0.00 4.02
28 29 7.828508 AGACCATGATAAGTTACATACCGTA 57.171 36.000 0.00 0.00 0.00 4.02
29 30 7.883217 AGACCATGATAAGTTACATACCGTAG 58.117 38.462 0.00 0.00 0.00 3.51
44 45 3.425577 CCGTAGGCGTGATAGTTTACA 57.574 47.619 0.00 0.00 46.14 2.41
45 46 3.973657 CCGTAGGCGTGATAGTTTACAT 58.026 45.455 0.00 0.00 46.14 2.29
46 47 5.112220 CCGTAGGCGTGATAGTTTACATA 57.888 43.478 0.00 0.00 46.14 2.29
47 48 5.152097 CCGTAGGCGTGATAGTTTACATAG 58.848 45.833 0.00 0.00 46.14 2.23
48 49 5.278169 CCGTAGGCGTGATAGTTTACATAGT 60.278 44.000 0.00 0.00 46.14 2.12
49 50 5.850128 CGTAGGCGTGATAGTTTACATAGTC 59.150 44.000 0.00 0.00 0.00 2.59
50 51 6.293298 CGTAGGCGTGATAGTTTACATAGTCT 60.293 42.308 0.00 0.00 0.00 3.24
51 52 7.095481 CGTAGGCGTGATAGTTTACATAGTCTA 60.095 40.741 0.00 0.00 0.00 2.59
53 54 6.996879 AGGCGTGATAGTTTACATAGTCTAGA 59.003 38.462 0.00 0.00 0.00 2.43
54 55 7.666388 AGGCGTGATAGTTTACATAGTCTAGAT 59.334 37.037 0.00 0.00 0.00 1.98
55 56 7.751348 GGCGTGATAGTTTACATAGTCTAGATG 59.249 40.741 0.00 0.00 0.00 2.90
57 58 9.600646 CGTGATAGTTTACATAGTCTAGATGTG 57.399 37.037 7.58 4.53 38.03 3.21
59 60 9.642343 TGATAGTTTACATAGTCTAGATGTGGT 57.358 33.333 7.58 2.38 38.03 4.16
63 64 9.476928 AGTTTACATAGTCTAGATGTGGTAACT 57.523 33.333 7.58 10.19 38.03 2.24
101 102 8.900511 AAAATTCATCGAAACATACTGACATG 57.099 30.769 0.00 0.00 0.00 3.21
102 103 7.848223 AATTCATCGAAACATACTGACATGA 57.152 32.000 0.00 0.00 0.00 3.07
104 105 6.207691 TCATCGAAACATACTGACATGAGA 57.792 37.500 0.00 0.00 0.00 3.27
105 106 6.809869 TCATCGAAACATACTGACATGAGAT 58.190 36.000 0.00 0.00 0.00 2.75
106 107 6.920210 TCATCGAAACATACTGACATGAGATC 59.080 38.462 0.00 0.00 0.00 2.75
107 108 6.456795 TCGAAACATACTGACATGAGATCT 57.543 37.500 0.00 0.00 0.00 2.75
108 109 7.568199 TCGAAACATACTGACATGAGATCTA 57.432 36.000 0.00 0.00 0.00 1.98
109 110 7.643579 TCGAAACATACTGACATGAGATCTAG 58.356 38.462 0.00 0.00 0.00 2.43
111 112 7.918033 CGAAACATACTGACATGAGATCTAGTT 59.082 37.037 0.00 0.00 0.00 2.24
112 113 9.593134 GAAACATACTGACATGAGATCTAGTTT 57.407 33.333 0.00 3.10 0.00 2.66
113 114 9.593134 AAACATACTGACATGAGATCTAGTTTC 57.407 33.333 0.00 0.00 0.00 2.78
114 115 7.421599 ACATACTGACATGAGATCTAGTTTCG 58.578 38.462 0.00 0.00 0.00 3.46
115 116 7.283354 ACATACTGACATGAGATCTAGTTTCGA 59.717 37.037 0.00 0.00 0.00 3.71
116 117 6.516739 ACTGACATGAGATCTAGTTTCGAA 57.483 37.500 0.00 0.00 0.00 3.71
117 118 6.559810 ACTGACATGAGATCTAGTTTCGAAG 58.440 40.000 0.00 0.00 0.00 3.79
118 119 6.375736 ACTGACATGAGATCTAGTTTCGAAGA 59.624 38.462 0.00 0.00 0.00 2.87
119 120 7.068103 ACTGACATGAGATCTAGTTTCGAAGAT 59.932 37.037 0.00 0.00 35.04 2.40
134 135 3.701532 GAAGATCTCGTCGAGGTGATT 57.298 47.619 21.63 11.75 0.00 2.57
135 136 4.035278 GAAGATCTCGTCGAGGTGATTT 57.965 45.455 21.63 13.69 0.00 2.17
136 137 4.425520 GAAGATCTCGTCGAGGTGATTTT 58.574 43.478 21.63 19.70 0.00 1.82
137 138 4.457834 AGATCTCGTCGAGGTGATTTTT 57.542 40.909 21.63 9.40 0.00 1.94
171 172 4.558538 GGATTTTGAATCCGAGTGATGG 57.441 45.455 4.10 0.00 32.68 3.51
172 173 3.947834 GGATTTTGAATCCGAGTGATGGT 59.052 43.478 4.10 0.00 32.68 3.55
173 174 4.399303 GGATTTTGAATCCGAGTGATGGTT 59.601 41.667 4.10 0.00 32.68 3.67
174 175 5.105756 GGATTTTGAATCCGAGTGATGGTTT 60.106 40.000 4.10 0.00 32.68 3.27
175 176 4.764679 TTTGAATCCGAGTGATGGTTTG 57.235 40.909 0.00 0.00 32.68 2.93
176 177 3.694043 TGAATCCGAGTGATGGTTTGA 57.306 42.857 0.00 0.00 32.68 2.69
177 178 4.220693 TGAATCCGAGTGATGGTTTGAT 57.779 40.909 0.00 0.00 32.68 2.57
178 179 4.191544 TGAATCCGAGTGATGGTTTGATC 58.808 43.478 0.00 0.00 32.68 2.92
180 181 5.128663 TGAATCCGAGTGATGGTTTGATCTA 59.871 40.000 0.00 0.00 32.68 1.98
182 183 3.767131 TCCGAGTGATGGTTTGATCTACA 59.233 43.478 0.00 0.00 0.00 2.74
183 184 4.221924 TCCGAGTGATGGTTTGATCTACAA 59.778 41.667 0.00 0.00 36.65 2.41
184 185 4.935205 CCGAGTGATGGTTTGATCTACAAA 59.065 41.667 0.00 0.00 44.79 2.83
185 186 8.012601 ATCCGAGTGATGGTTTGATCTACAAAA 61.013 37.037 0.00 0.00 39.99 2.44
217 218 7.530863 ACTTTGAAATAGGAAGAATCTTTCGC 58.469 34.615 0.00 0.00 34.02 4.70
218 219 6.436843 TTGAAATAGGAAGAATCTTTCGCC 57.563 37.500 0.00 0.00 34.02 5.54
219 220 4.570772 TGAAATAGGAAGAATCTTTCGCCG 59.429 41.667 0.00 0.00 35.20 6.46
220 221 4.402056 AATAGGAAGAATCTTTCGCCGA 57.598 40.909 0.00 0.00 35.20 5.54
221 222 2.011540 AGGAAGAATCTTTCGCCGAC 57.988 50.000 0.00 0.00 35.20 4.79
222 223 0.645868 GGAAGAATCTTTCGCCGACG 59.354 55.000 0.00 0.00 42.01 5.12
223 224 1.347320 GAAGAATCTTTCGCCGACGT 58.653 50.000 0.00 0.00 41.18 4.34
224 225 1.320852 GAAGAATCTTTCGCCGACGTC 59.679 52.381 5.18 5.18 41.18 4.34
225 226 0.242825 AGAATCTTTCGCCGACGTCA 59.757 50.000 17.16 0.00 41.18 4.35
226 227 1.135083 AGAATCTTTCGCCGACGTCAT 60.135 47.619 17.16 0.00 41.18 3.06
227 228 1.255600 GAATCTTTCGCCGACGTCATC 59.744 52.381 17.16 5.16 41.18 2.92
228 229 0.456221 ATCTTTCGCCGACGTCATCT 59.544 50.000 17.16 0.00 41.18 2.90
229 230 0.242825 TCTTTCGCCGACGTCATCTT 59.757 50.000 17.16 0.00 41.18 2.40
230 231 1.068474 CTTTCGCCGACGTCATCTTT 58.932 50.000 17.16 0.00 41.18 2.52
231 232 1.459592 CTTTCGCCGACGTCATCTTTT 59.540 47.619 17.16 0.00 41.18 2.27
232 233 1.504359 TTCGCCGACGTCATCTTTTT 58.496 45.000 17.16 0.00 41.18 1.94
251 252 2.599408 TTGTCTCCTACTTCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
252 253 2.599408 TGTCTCCTACTTCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
253 254 2.444421 TGTCTCCTACTTCCTCCGTTC 58.556 52.381 0.00 0.00 0.00 3.95
254 255 1.750206 GTCTCCTACTTCCTCCGTTCC 59.250 57.143 0.00 0.00 0.00 3.62
255 256 1.639628 TCTCCTACTTCCTCCGTTCCT 59.360 52.381 0.00 0.00 0.00 3.36
257 258 3.267812 TCTCCTACTTCCTCCGTTCCTAA 59.732 47.826 0.00 0.00 0.00 2.69
258 259 4.021916 CTCCTACTTCCTCCGTTCCTAAA 58.978 47.826 0.00 0.00 0.00 1.85
259 260 4.617593 TCCTACTTCCTCCGTTCCTAAAT 58.382 43.478 0.00 0.00 0.00 1.40
260 261 5.769835 TCCTACTTCCTCCGTTCCTAAATA 58.230 41.667 0.00 0.00 0.00 1.40
261 262 6.379579 TCCTACTTCCTCCGTTCCTAAATAT 58.620 40.000 0.00 0.00 0.00 1.28
262 263 6.842807 TCCTACTTCCTCCGTTCCTAAATATT 59.157 38.462 0.00 0.00 0.00 1.28
263 264 7.346436 TCCTACTTCCTCCGTTCCTAAATATTT 59.654 37.037 5.89 5.89 0.00 1.40
265 266 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
266 267 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
267 268 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
268 269 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
270 271 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
271 272 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
272 273 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
273 274 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
311 312 9.739276 TGTGATTACATAGGAAGAAAAATGAGT 57.261 29.630 0.00 0.00 0.00 3.41
313 314 9.958180 TGATTACATAGGAAGAAAAATGAGTGA 57.042 29.630 0.00 0.00 0.00 3.41
366 367 9.607988 ACATTCGTATGTGATAGTCCATTTAAA 57.392 29.630 6.89 0.00 43.29 1.52
399 400 7.675161 AAAGACAAATATTTAGGAATGGGGG 57.325 36.000 0.00 0.00 0.00 5.40
415 416 2.507407 GGGGGAGTAGTTTGCATGAA 57.493 50.000 0.00 0.00 0.00 2.57
417 418 2.689983 GGGGGAGTAGTTTGCATGAATG 59.310 50.000 0.00 0.00 0.00 2.67
436 437 8.593492 ATGAATGCAAGAAATCATGATCAATG 57.407 30.769 9.06 7.41 37.66 2.82
437 438 7.552459 TGAATGCAAGAAATCATGATCAATGT 58.448 30.769 9.06 0.00 37.56 2.71
439 440 6.275494 TGCAAGAAATCATGATCAATGTGT 57.725 33.333 9.06 0.00 37.56 3.72
440 441 6.096695 TGCAAGAAATCATGATCAATGTGTG 58.903 36.000 9.06 2.94 37.56 3.82
442 443 6.330278 CAAGAAATCATGATCAATGTGTGCT 58.670 36.000 9.06 0.00 37.56 4.40
443 444 5.891451 AGAAATCATGATCAATGTGTGCTG 58.109 37.500 9.06 0.00 37.56 4.41
445 446 2.438411 TCATGATCAATGTGTGCTGCA 58.562 42.857 0.00 0.00 37.56 4.41
446 447 3.020984 TCATGATCAATGTGTGCTGCAT 58.979 40.909 5.27 0.00 37.56 3.96
447 448 2.931512 TGATCAATGTGTGCTGCATG 57.068 45.000 5.27 0.00 0.00 4.06
448 449 1.135228 TGATCAATGTGTGCTGCATGC 60.135 47.619 11.82 11.82 43.25 4.06
458 459 1.065273 GCTGCATGCATTTCCTCCG 59.935 57.895 22.97 7.95 42.31 4.63
459 460 1.660560 GCTGCATGCATTTCCTCCGT 61.661 55.000 22.97 0.00 42.31 4.69
460 461 0.099968 CTGCATGCATTTCCTCCGTG 59.900 55.000 22.97 0.79 0.00 4.94
461 462 1.314534 TGCATGCATTTCCTCCGTGG 61.315 55.000 18.46 0.00 37.10 4.94
462 463 1.031571 GCATGCATTTCCTCCGTGGA 61.032 55.000 14.21 0.00 44.51 4.02
463 464 1.683943 CATGCATTTCCTCCGTGGAT 58.316 50.000 0.00 0.00 45.68 3.41
464 465 1.335810 CATGCATTTCCTCCGTGGATG 59.664 52.381 0.00 0.00 45.68 3.51
465 466 0.617935 TGCATTTCCTCCGTGGATGA 59.382 50.000 0.00 0.00 45.68 2.92
467 468 1.407437 GCATTTCCTCCGTGGATGACT 60.407 52.381 0.00 0.00 45.68 3.41
470 471 0.904865 TTCCTCCGTGGATGACTGCT 60.905 55.000 0.00 0.00 45.68 4.24
471 472 0.033503 TCCTCCGTGGATGACTGCTA 60.034 55.000 0.00 0.00 40.56 3.49
472 473 0.103208 CCTCCGTGGATGACTGCTAC 59.897 60.000 0.00 0.00 38.35 3.58
473 474 1.107114 CTCCGTGGATGACTGCTACT 58.893 55.000 0.00 0.00 0.00 2.57
474 475 1.066303 CTCCGTGGATGACTGCTACTC 59.934 57.143 0.00 0.00 0.00 2.59
475 476 0.103208 CCGTGGATGACTGCTACTCC 59.897 60.000 0.00 0.00 0.00 3.85
476 477 0.103208 CGTGGATGACTGCTACTCCC 59.897 60.000 0.00 0.00 0.00 4.30
477 478 1.490574 GTGGATGACTGCTACTCCCT 58.509 55.000 0.00 0.00 0.00 4.20
478 479 1.410882 GTGGATGACTGCTACTCCCTC 59.589 57.143 0.00 0.00 0.00 4.30
480 481 1.689575 GGATGACTGCTACTCCCTCCA 60.690 57.143 0.00 0.00 0.00 3.86
481 482 2.324541 GATGACTGCTACTCCCTCCAT 58.675 52.381 0.00 0.00 0.00 3.41
485 486 1.273838 ACTGCTACTCCCTCCATTCCA 60.274 52.381 0.00 0.00 0.00 3.53
486 487 1.839994 CTGCTACTCCCTCCATTCCAA 59.160 52.381 0.00 0.00 0.00 3.53
487 488 2.239654 CTGCTACTCCCTCCATTCCAAA 59.760 50.000 0.00 0.00 0.00 3.28
488 489 2.852449 TGCTACTCCCTCCATTCCAAAT 59.148 45.455 0.00 0.00 0.00 2.32
489 490 3.269381 TGCTACTCCCTCCATTCCAAATT 59.731 43.478 0.00 0.00 0.00 1.82
490 491 4.476846 TGCTACTCCCTCCATTCCAAATTA 59.523 41.667 0.00 0.00 0.00 1.40
491 492 4.822350 GCTACTCCCTCCATTCCAAATTAC 59.178 45.833 0.00 0.00 0.00 1.89
492 493 5.398012 GCTACTCCCTCCATTCCAAATTACT 60.398 44.000 0.00 0.00 0.00 2.24
494 495 4.130118 CTCCCTCCATTCCAAATTACTCG 58.870 47.826 0.00 0.00 0.00 4.18
496 497 2.618709 CCTCCATTCCAAATTACTCGCC 59.381 50.000 0.00 0.00 0.00 5.54
499 500 1.670811 CATTCCAAATTACTCGCCGCT 59.329 47.619 0.00 0.00 0.00 5.52
500 501 1.083489 TTCCAAATTACTCGCCGCTG 58.917 50.000 0.00 0.00 0.00 5.18
501 502 0.248012 TCCAAATTACTCGCCGCTGA 59.752 50.000 0.00 0.00 0.00 4.26
502 503 1.083489 CCAAATTACTCGCCGCTGAA 58.917 50.000 0.00 0.00 0.00 3.02
504 505 2.097466 CCAAATTACTCGCCGCTGAAAT 59.903 45.455 0.00 0.00 0.00 2.17
505 506 3.100817 CAAATTACTCGCCGCTGAAATG 58.899 45.455 0.00 0.00 0.00 2.32
506 507 1.299541 ATTACTCGCCGCTGAAATGG 58.700 50.000 0.00 0.00 0.00 3.16
507 508 0.248012 TTACTCGCCGCTGAAATGGA 59.752 50.000 0.00 0.00 0.00 3.41
508 509 0.464036 TACTCGCCGCTGAAATGGAT 59.536 50.000 0.00 0.00 0.00 3.41
509 510 1.091771 ACTCGCCGCTGAAATGGATG 61.092 55.000 0.00 0.00 0.00 3.51
510 511 1.078497 TCGCCGCTGAAATGGATGT 60.078 52.632 0.00 0.00 0.00 3.06
511 512 0.176910 TCGCCGCTGAAATGGATGTA 59.823 50.000 0.00 0.00 0.00 2.29
512 513 1.202639 TCGCCGCTGAAATGGATGTAT 60.203 47.619 0.00 0.00 0.00 2.29
513 514 1.195448 CGCCGCTGAAATGGATGTATC 59.805 52.381 0.00 0.00 0.00 2.24
516 517 3.681897 GCCGCTGAAATGGATGTATCTAG 59.318 47.826 0.00 0.00 0.00 2.43
517 518 4.561530 GCCGCTGAAATGGATGTATCTAGA 60.562 45.833 0.00 0.00 0.00 2.43
518 519 5.541845 CCGCTGAAATGGATGTATCTAGAA 58.458 41.667 0.00 0.00 0.00 2.10
520 521 6.219473 CGCTGAAATGGATGTATCTAGAACT 58.781 40.000 0.00 0.00 0.00 3.01
521 522 7.371159 CGCTGAAATGGATGTATCTAGAACTA 58.629 38.462 0.00 0.00 0.00 2.24
522 523 7.867909 CGCTGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
523 524 9.547753 GCTGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
528 529 9.851686 AATGGATGTATCTAGAACTAAAATGCA 57.148 29.630 0.00 0.00 0.00 3.96
549 550 8.763049 ATGCATATATATACATCCATACGTGC 57.237 34.615 0.00 0.00 0.00 5.34
550 551 6.861055 TGCATATATATACATCCATACGTGCG 59.139 38.462 0.00 0.00 0.00 5.34
551 552 7.081976 GCATATATATACATCCATACGTGCGA 58.918 38.462 0.00 0.00 0.00 5.10
556 557 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
557 558 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
558 559 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
559 560 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
560 561 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
562 563 3.615056 CCATACGTGCGACAAGTAATTCA 59.385 43.478 0.00 0.00 32.82 2.57
564 565 3.021269 ACGTGCGACAAGTAATTCAGA 57.979 42.857 0.00 0.00 0.00 3.27
566 567 3.183775 ACGTGCGACAAGTAATTCAGAAC 59.816 43.478 0.00 0.00 0.00 3.01
567 568 3.183574 CGTGCGACAAGTAATTCAGAACA 59.816 43.478 0.00 0.00 0.00 3.18
568 569 4.664139 CGTGCGACAAGTAATTCAGAACAG 60.664 45.833 0.00 0.00 0.00 3.16
569 570 4.447724 GTGCGACAAGTAATTCAGAACAGA 59.552 41.667 0.00 0.00 0.00 3.41
570 571 4.686091 TGCGACAAGTAATTCAGAACAGAG 59.314 41.667 0.00 0.00 0.00 3.35
571 572 4.923871 GCGACAAGTAATTCAGAACAGAGA 59.076 41.667 0.00 0.00 0.00 3.10
576 577 8.410673 ACAAGTAATTCAGAACAGAGAGAGTA 57.589 34.615 0.00 0.00 0.00 2.59
577 578 9.030452 ACAAGTAATTCAGAACAGAGAGAGTAT 57.970 33.333 0.00 0.00 0.00 2.12
578 579 9.868277 CAAGTAATTCAGAACAGAGAGAGTATT 57.132 33.333 0.00 0.00 0.00 1.89
581 582 9.458374 GTAATTCAGAACAGAGAGAGTATTAGC 57.542 37.037 0.00 0.00 0.00 3.09
582 583 7.896383 ATTCAGAACAGAGAGAGTATTAGCT 57.104 36.000 0.00 0.00 0.00 3.32
584 585 8.809468 TTCAGAACAGAGAGAGTATTAGCTAA 57.191 34.615 8.99 8.99 0.00 3.09
585 586 8.988546 TCAGAACAGAGAGAGTATTAGCTAAT 57.011 34.615 22.09 22.09 0.00 1.73
650 651 5.828299 AAAAAGTGTTCGGACTTGAATCA 57.172 34.783 0.00 0.00 36.28 2.57
651 652 6.391227 AAAAAGTGTTCGGACTTGAATCAT 57.609 33.333 0.00 0.00 36.28 2.45
653 654 3.600388 AGTGTTCGGACTTGAATCATCC 58.400 45.455 0.00 0.00 0.00 3.51
659 660 1.407437 GGACTTGAATCATCCGTGCCT 60.407 52.381 0.00 0.00 0.00 4.75
660 661 2.158957 GGACTTGAATCATCCGTGCCTA 60.159 50.000 0.00 0.00 0.00 3.93
661 662 3.495100 GGACTTGAATCATCCGTGCCTAT 60.495 47.826 0.00 0.00 0.00 2.57
662 663 4.130118 GACTTGAATCATCCGTGCCTATT 58.870 43.478 0.00 0.00 0.00 1.73
663 664 5.290493 ACTTGAATCATCCGTGCCTATTA 57.710 39.130 0.00 0.00 0.00 0.98
666 667 6.041637 ACTTGAATCATCCGTGCCTATTACTA 59.958 38.462 0.00 0.00 0.00 1.82
667 668 6.413783 TGAATCATCCGTGCCTATTACTAA 57.586 37.500 0.00 0.00 0.00 2.24
668 669 6.822442 TGAATCATCCGTGCCTATTACTAAA 58.178 36.000 0.00 0.00 0.00 1.85
669 670 7.450074 TGAATCATCCGTGCCTATTACTAAAT 58.550 34.615 0.00 0.00 0.00 1.40
670 671 7.936847 TGAATCATCCGTGCCTATTACTAAATT 59.063 33.333 0.00 0.00 0.00 1.82
674 675 5.607477 TCCGTGCCTATTACTAAATTCCTG 58.393 41.667 0.00 0.00 0.00 3.86
675 676 5.129815 TCCGTGCCTATTACTAAATTCCTGT 59.870 40.000 0.00 0.00 0.00 4.00
679 680 4.451435 GCCTATTACTAAATTCCTGTCGGC 59.549 45.833 0.00 0.00 0.00 5.54
680 681 5.607477 CCTATTACTAAATTCCTGTCGGCA 58.393 41.667 0.00 0.00 0.00 5.69
701 702 5.221581 GGCAGGACCGTTTTCTAATATCCTA 60.222 44.000 0.00 0.00 33.29 2.94
827 5161 1.310904 CCCCCGAGAAAAACGAAACA 58.689 50.000 0.00 0.00 0.00 2.83
859 5196 4.065789 CAGAACCTCCTACAACCAGAAAC 58.934 47.826 0.00 0.00 0.00 2.78
875 5212 2.711547 AGAAACAACTGGGGTAGAAGCT 59.288 45.455 0.00 0.00 0.00 3.74
942 5286 0.108472 TCTCCTCTGTGCGATTGCTG 60.108 55.000 6.47 0.00 43.34 4.41
954 5298 1.942657 CGATTGCTGGACACATTAGGG 59.057 52.381 0.00 0.00 0.00 3.53
975 5322 0.521291 CACAATGAAACGCCGTCCAT 59.479 50.000 0.00 0.00 0.00 3.41
1128 7872 3.702048 CCTTTCCTCCGGGTCGCA 61.702 66.667 0.00 0.00 0.00 5.10
1293 8037 1.828660 CCGCACTATCGAGGGAGGT 60.829 63.158 0.00 0.00 41.01 3.85
1389 8205 1.003839 CAACGGCAGCCTCCTGTTA 60.004 57.895 10.54 0.00 41.26 2.41
1613 8432 4.747529 GTGGGCCGACGTGGGTAC 62.748 72.222 18.47 11.54 38.63 3.34
2067 8886 0.532573 TGAAGATGACGAGGCTGTCC 59.467 55.000 12.45 1.73 38.11 4.02
2114 8933 6.431278 CGCTGATATATCCTTACACGATAGG 58.569 44.000 10.25 0.00 43.77 2.57
2165 8984 3.508845 ACAAGGTGCTTGATAAGGTGT 57.491 42.857 0.00 0.00 43.42 4.16
2166 8985 3.149196 ACAAGGTGCTTGATAAGGTGTG 58.851 45.455 0.00 0.00 43.42 3.82
2167 8986 3.149196 CAAGGTGCTTGATAAGGTGTGT 58.851 45.455 0.00 0.00 43.42 3.72
2169 8988 2.639839 AGGTGCTTGATAAGGTGTGTCT 59.360 45.455 0.00 0.00 0.00 3.41
2171 8990 3.003480 GTGCTTGATAAGGTGTGTCTCC 58.997 50.000 0.00 0.00 0.00 3.71
2172 8991 2.906389 TGCTTGATAAGGTGTGTCTCCT 59.094 45.455 0.00 0.00 36.81 3.69
2173 8992 3.265791 GCTTGATAAGGTGTGTCTCCTG 58.734 50.000 0.00 0.00 35.27 3.86
2174 8993 3.307059 GCTTGATAAGGTGTGTCTCCTGT 60.307 47.826 0.00 0.00 35.27 4.00
2175 8994 4.081642 GCTTGATAAGGTGTGTCTCCTGTA 60.082 45.833 0.00 0.00 35.27 2.74
2178 8997 2.841442 AAGGTGTGTCTCCTGTAAGC 57.159 50.000 0.00 0.00 35.27 3.09
2225 9047 8.468720 TGTAAATTTTGATCAATGATGTGCTG 57.531 30.769 9.40 0.00 0.00 4.41
2240 9178 1.246056 TGCTGAACTGCCAGGAATGC 61.246 55.000 0.00 0.00 34.82 3.56
2241 9179 1.246056 GCTGAACTGCCAGGAATGCA 61.246 55.000 0.00 0.00 37.17 3.96
2266 9204 6.259608 AGCACTACATTTCAGCTTATGATGAC 59.740 38.462 7.12 0.00 38.42 3.06
2291 9229 2.609427 TGTGTGGCAGAGCTGATATC 57.391 50.000 0.85 0.00 0.00 1.63
2310 9249 3.848272 TCGGAAAAGGATGTCATTTGC 57.152 42.857 0.00 0.00 29.66 3.68
2327 9266 7.088905 GTCATTTGCTCATCCATATGAATTCC 58.911 38.462 3.65 0.00 41.57 3.01
2395 9334 9.772973 TGTTTTAGCCTCGTATCATGTAATTAT 57.227 29.630 0.00 0.00 0.00 1.28
2425 9364 4.771903 TGCAGTCTTAGTTGGTGTGTTAA 58.228 39.130 0.00 0.00 0.00 2.01
2426 9365 5.186942 TGCAGTCTTAGTTGGTGTGTTAAA 58.813 37.500 0.00 0.00 0.00 1.52
2442 9381 6.751888 GTGTGTTAAATTCTGCCACCATTATC 59.248 38.462 0.00 0.00 0.00 1.75
2462 9401 7.603180 TTATCTGTATGGTCACTCTATTGCT 57.397 36.000 0.00 0.00 0.00 3.91
2463 9402 5.521906 TCTGTATGGTCACTCTATTGCTC 57.478 43.478 0.00 0.00 0.00 4.26
2468 9407 2.025155 GGTCACTCTATTGCTCGAGGA 58.975 52.381 15.58 9.02 0.00 3.71
2469 9408 2.427453 GGTCACTCTATTGCTCGAGGAA 59.573 50.000 22.12 22.12 0.00 3.36
2470 9409 3.068873 GGTCACTCTATTGCTCGAGGAAT 59.931 47.826 30.95 30.95 39.44 3.01
2471 9410 4.278669 GGTCACTCTATTGCTCGAGGAATA 59.721 45.833 30.03 30.03 37.30 1.75
2472 9411 5.047660 GGTCACTCTATTGCTCGAGGAATAT 60.048 44.000 31.50 18.99 37.62 1.28
2474 9413 7.247728 GTCACTCTATTGCTCGAGGAATATAG 58.752 42.308 32.13 32.13 37.62 1.31
2475 9414 6.375736 TCACTCTATTGCTCGAGGAATATAGG 59.624 42.308 34.38 27.32 37.08 2.57
2507 9455 4.628333 GCATGCTTTTGTGAATGTTATGCT 59.372 37.500 11.37 0.00 34.18 3.79
2573 9522 6.535150 GTCAATTTCAGTATCAGTTCATCCGA 59.465 38.462 0.00 0.00 0.00 4.55
2574 9523 7.064609 GTCAATTTCAGTATCAGTTCATCCGAA 59.935 37.037 0.00 0.00 0.00 4.30
2576 9525 7.721286 ATTTCAGTATCAGTTCATCCGAATC 57.279 36.000 0.00 0.00 32.61 2.52
2585 9534 6.649155 TCAGTTCATCCGAATCCTCAATTTA 58.351 36.000 0.00 0.00 32.61 1.40
2608 9557 3.811497 GGTGCTTAACTTAAGGTTGTCGT 59.189 43.478 7.53 0.00 38.75 4.34
2610 9559 3.810941 TGCTTAACTTAAGGTTGTCGTGG 59.189 43.478 7.53 0.00 38.75 4.94
2621 9570 3.135994 GGTTGTCGTGGTACATTTCTGT 58.864 45.455 0.00 0.00 44.52 3.41
2715 9666 5.399858 CATGCTCAATGAAGAAACTGAAGG 58.600 41.667 0.00 0.00 38.72 3.46
2754 9705 7.063308 GCCTAATGTCACCAAATGTTGTTATTG 59.937 37.037 0.00 0.00 0.00 1.90
2827 9779 3.662759 TTTTTCACTTCTCTGGGGTGT 57.337 42.857 0.00 0.00 33.30 4.16
2854 9806 2.302445 GGATGGAGATAGCAGCATCACT 59.698 50.000 0.00 0.00 0.00 3.41
2969 9930 4.000325 TCATGTTCGAATATATTGGGCGG 59.000 43.478 7.11 0.00 0.00 6.13
3022 9993 3.632643 TCTGATGCAAATGCCAGTCTA 57.367 42.857 2.46 0.00 41.18 2.59
3025 9996 3.419943 TGATGCAAATGCCAGTCTAACA 58.580 40.909 2.46 0.00 41.18 2.41
3027 9998 1.541147 TGCAAATGCCAGTCTAACAGC 59.459 47.619 2.46 0.00 41.18 4.40
3058 10030 0.962356 CCAAGGTCATGCACAGGGAC 60.962 60.000 0.00 0.00 0.00 4.46
3098 10070 4.843728 TGAAGAACTAACTTGGCCTATGG 58.156 43.478 3.32 0.00 0.00 2.74
3111 10083 1.489481 CCTATGGCAGTGAGTCAGGA 58.511 55.000 0.00 0.00 33.74 3.86
3112 10084 2.045524 CCTATGGCAGTGAGTCAGGAT 58.954 52.381 0.00 0.00 33.74 3.24
3113 10085 2.224233 CCTATGGCAGTGAGTCAGGATG 60.224 54.545 0.00 0.00 33.74 3.51
3114 10086 1.283347 ATGGCAGTGAGTCAGGATGT 58.717 50.000 0.00 0.00 33.74 3.06
3115 10087 0.322648 TGGCAGTGAGTCAGGATGTG 59.677 55.000 0.00 0.00 37.40 3.21
3116 10088 1.023513 GGCAGTGAGTCAGGATGTGC 61.024 60.000 0.00 0.00 37.40 4.57
3117 10089 0.036577 GCAGTGAGTCAGGATGTGCT 60.037 55.000 0.00 0.00 37.40 4.40
3118 10090 1.723220 CAGTGAGTCAGGATGTGCTG 58.277 55.000 0.00 0.00 37.40 4.41
3119 10091 1.274447 CAGTGAGTCAGGATGTGCTGA 59.726 52.381 0.00 0.00 37.40 4.26
3120 10092 1.973515 AGTGAGTCAGGATGTGCTGAA 59.026 47.619 5.77 0.00 37.40 3.02
3121 10093 2.028294 AGTGAGTCAGGATGTGCTGAAG 60.028 50.000 5.77 0.00 37.40 3.02
3122 10094 1.338484 TGAGTCAGGATGTGCTGAAGC 60.338 52.381 5.77 0.00 37.40 3.86
3123 10095 0.982704 AGTCAGGATGTGCTGAAGCT 59.017 50.000 5.77 0.00 37.00 3.74
3124 10096 1.085091 GTCAGGATGTGCTGAAGCTG 58.915 55.000 5.77 0.00 37.00 4.24
3125 10097 0.689055 TCAGGATGTGCTGAAGCTGT 59.311 50.000 1.47 0.00 37.00 4.40
3126 10098 1.085091 CAGGATGTGCTGAAGCTGTC 58.915 55.000 3.61 0.00 42.66 3.51
3127 10099 0.689055 AGGATGTGCTGAAGCTGTCA 59.311 50.000 3.61 1.48 42.66 3.58
3128 10100 1.281287 AGGATGTGCTGAAGCTGTCAT 59.719 47.619 3.61 6.00 42.66 3.06
3129 10101 1.669779 GGATGTGCTGAAGCTGTCATC 59.330 52.381 18.15 18.15 42.66 2.92
3130 10102 1.669779 GATGTGCTGAAGCTGTCATCC 59.330 52.381 16.79 0.00 42.66 3.51
3144 10116 0.468226 TCATCCCCGTTATGAGGTGC 59.532 55.000 0.00 0.00 0.00 5.01
3145 10117 0.469917 CATCCCCGTTATGAGGTGCT 59.530 55.000 0.00 0.00 0.00 4.40
3147 10119 0.616395 TCCCCGTTATGAGGTGCTGA 60.616 55.000 0.00 0.00 0.00 4.26
3148 10120 0.251916 CCCCGTTATGAGGTGCTGAA 59.748 55.000 0.00 0.00 0.00 3.02
3150 10122 1.009829 CCGTTATGAGGTGCTGAAGC 58.990 55.000 0.00 0.00 42.50 3.86
3151 10123 1.406069 CCGTTATGAGGTGCTGAAGCT 60.406 52.381 3.61 0.00 42.66 3.74
3152 10124 1.662629 CGTTATGAGGTGCTGAAGCTG 59.337 52.381 3.61 0.00 42.66 4.24
3153 10125 2.704572 GTTATGAGGTGCTGAAGCTGT 58.295 47.619 3.61 0.00 42.66 4.40
3154 10126 2.675348 GTTATGAGGTGCTGAAGCTGTC 59.325 50.000 3.61 0.00 42.66 3.51
3155 10127 0.689055 ATGAGGTGCTGAAGCTGTCA 59.311 50.000 3.61 4.37 42.66 3.58
3156 10128 0.689055 TGAGGTGCTGAAGCTGTCAT 59.311 50.000 3.61 0.00 42.66 3.06
3157 10129 1.338484 TGAGGTGCTGAAGCTGTCATC 60.338 52.381 3.61 2.87 42.66 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.698210 ACGGTATGTAACTTATCATGGTCTTTA 58.302 33.333 0.00 0.00 0.00 1.85
2 3 7.562135 ACGGTATGTAACTTATCATGGTCTTT 58.438 34.615 0.00 0.00 0.00 2.52
3 4 7.120923 ACGGTATGTAACTTATCATGGTCTT 57.879 36.000 0.00 0.00 0.00 3.01
4 5 6.726490 ACGGTATGTAACTTATCATGGTCT 57.274 37.500 0.00 0.00 0.00 3.85
5 6 7.088905 CCTACGGTATGTAACTTATCATGGTC 58.911 42.308 0.00 0.00 31.20 4.02
6 7 6.517864 GCCTACGGTATGTAACTTATCATGGT 60.518 42.308 0.00 0.00 31.20 3.55
7 8 5.867716 GCCTACGGTATGTAACTTATCATGG 59.132 44.000 0.00 0.00 31.20 3.66
9 10 5.242393 ACGCCTACGGTATGTAACTTATCAT 59.758 40.000 0.00 0.00 46.04 2.45
10 11 4.580167 ACGCCTACGGTATGTAACTTATCA 59.420 41.667 0.00 0.00 46.04 2.15
11 12 4.913924 CACGCCTACGGTATGTAACTTATC 59.086 45.833 0.00 0.00 46.04 1.75
12 13 4.580167 TCACGCCTACGGTATGTAACTTAT 59.420 41.667 0.00 0.00 46.04 1.73
14 15 2.754552 TCACGCCTACGGTATGTAACTT 59.245 45.455 0.00 0.00 46.04 2.66
15 16 2.368439 TCACGCCTACGGTATGTAACT 58.632 47.619 0.00 0.00 46.04 2.24
16 17 2.849880 TCACGCCTACGGTATGTAAC 57.150 50.000 0.00 0.00 46.04 2.50
17 18 4.136796 ACTATCACGCCTACGGTATGTAA 58.863 43.478 0.00 0.00 46.04 2.41
18 19 3.743521 ACTATCACGCCTACGGTATGTA 58.256 45.455 0.00 0.00 46.04 2.29
19 20 2.579873 ACTATCACGCCTACGGTATGT 58.420 47.619 0.00 0.00 46.04 2.29
20 21 3.637998 AACTATCACGCCTACGGTATG 57.362 47.619 0.00 0.00 46.04 2.39
21 22 4.580167 TGTAAACTATCACGCCTACGGTAT 59.420 41.667 0.00 0.00 46.04 2.73
22 23 3.944650 TGTAAACTATCACGCCTACGGTA 59.055 43.478 0.00 0.00 46.04 4.02
23 24 2.754552 TGTAAACTATCACGCCTACGGT 59.245 45.455 0.00 0.00 46.04 4.83
24 25 3.425577 TGTAAACTATCACGCCTACGG 57.574 47.619 0.00 0.00 46.04 4.02
26 27 6.968250 AGACTATGTAAACTATCACGCCTAC 58.032 40.000 0.00 0.00 0.00 3.18
28 29 6.996879 TCTAGACTATGTAAACTATCACGCCT 59.003 38.462 0.00 0.00 0.00 5.52
29 30 7.199541 TCTAGACTATGTAAACTATCACGCC 57.800 40.000 0.00 0.00 0.00 5.68
32 33 9.900710 CCACATCTAGACTATGTAAACTATCAC 57.099 37.037 0.00 0.00 35.82 3.06
37 38 9.476928 AGTTACCACATCTAGACTATGTAAACT 57.523 33.333 0.00 4.53 35.82 2.66
75 76 9.345517 CATGTCAGTATGTTTCGATGAATTTTT 57.654 29.630 0.00 0.00 37.40 1.94
76 77 8.729756 TCATGTCAGTATGTTTCGATGAATTTT 58.270 29.630 0.00 0.00 37.40 1.82
78 79 7.765819 TCTCATGTCAGTATGTTTCGATGAATT 59.234 33.333 0.00 0.00 37.40 2.17
79 80 7.267857 TCTCATGTCAGTATGTTTCGATGAAT 58.732 34.615 0.00 0.00 37.40 2.57
81 82 6.207691 TCTCATGTCAGTATGTTTCGATGA 57.792 37.500 0.00 0.00 37.40 2.92
82 83 6.922407 AGATCTCATGTCAGTATGTTTCGATG 59.078 38.462 0.00 0.00 37.40 3.84
83 84 7.048629 AGATCTCATGTCAGTATGTTTCGAT 57.951 36.000 0.00 0.00 37.40 3.59
84 85 6.456795 AGATCTCATGTCAGTATGTTTCGA 57.543 37.500 0.00 0.00 37.40 3.71
85 86 7.421599 ACTAGATCTCATGTCAGTATGTTTCG 58.578 38.462 0.00 0.00 37.40 3.46
86 87 9.593134 AAACTAGATCTCATGTCAGTATGTTTC 57.407 33.333 0.00 0.00 37.40 2.78
87 88 9.593134 GAAACTAGATCTCATGTCAGTATGTTT 57.407 33.333 0.00 0.00 37.40 2.83
88 89 7.918033 CGAAACTAGATCTCATGTCAGTATGTT 59.082 37.037 0.00 0.00 37.40 2.71
89 90 7.283354 TCGAAACTAGATCTCATGTCAGTATGT 59.717 37.037 0.00 0.00 37.40 2.29
90 91 7.643579 TCGAAACTAGATCTCATGTCAGTATG 58.356 38.462 0.00 0.00 37.54 2.39
91 92 7.809546 TCGAAACTAGATCTCATGTCAGTAT 57.190 36.000 0.00 0.00 0.00 2.12
93 94 6.375736 TCTTCGAAACTAGATCTCATGTCAGT 59.624 38.462 0.00 0.00 0.00 3.41
95 96 6.759497 TCTTCGAAACTAGATCTCATGTCA 57.241 37.500 0.00 0.00 0.00 3.58
114 115 3.701532 AATCACCTCGACGAGATCTTC 57.298 47.619 26.11 0.00 0.00 2.87
115 116 4.457834 AAAATCACCTCGACGAGATCTT 57.542 40.909 26.11 10.60 0.00 2.40
116 117 4.457834 AAAAATCACCTCGACGAGATCT 57.542 40.909 26.11 0.00 0.00 2.75
136 137 8.983724 GGATTCAAAATCCGTTTTCACATAAAA 58.016 29.630 3.10 0.00 35.41 1.52
137 138 8.527567 GGATTCAAAATCCGTTTTCACATAAA 57.472 30.769 3.10 0.00 35.41 1.40
150 151 3.947834 ACCATCACTCGGATTCAAAATCC 59.052 43.478 8.39 8.39 32.57 3.01
152 153 5.476599 TCAAACCATCACTCGGATTCAAAAT 59.523 36.000 0.00 0.00 32.57 1.82
153 154 4.824537 TCAAACCATCACTCGGATTCAAAA 59.175 37.500 0.00 0.00 32.57 2.44
154 155 4.393834 TCAAACCATCACTCGGATTCAAA 58.606 39.130 0.00 0.00 32.57 2.69
155 156 4.014569 TCAAACCATCACTCGGATTCAA 57.985 40.909 0.00 0.00 32.57 2.69
156 157 3.694043 TCAAACCATCACTCGGATTCA 57.306 42.857 0.00 0.00 32.57 2.57
157 158 4.446371 AGATCAAACCATCACTCGGATTC 58.554 43.478 0.00 0.00 32.57 2.52
158 159 4.494091 AGATCAAACCATCACTCGGATT 57.506 40.909 0.00 0.00 32.57 3.01
159 160 4.405680 TGTAGATCAAACCATCACTCGGAT 59.594 41.667 0.00 0.00 36.39 4.18
160 161 3.767131 TGTAGATCAAACCATCACTCGGA 59.233 43.478 0.00 0.00 0.00 4.55
164 165 7.765695 ATGTTTTGTAGATCAAACCATCACT 57.234 32.000 0.00 0.00 42.59 3.41
165 166 8.816640 AAATGTTTTGTAGATCAAACCATCAC 57.183 30.769 0.00 0.00 44.39 3.06
191 192 8.665685 GCGAAAGATTCTTCCTATTTCAAAGTA 58.334 33.333 0.00 0.00 31.69 2.24
192 193 7.362142 GGCGAAAGATTCTTCCTATTTCAAAGT 60.362 37.037 0.00 0.00 31.69 2.66
194 195 6.403200 CGGCGAAAGATTCTTCCTATTTCAAA 60.403 38.462 0.00 0.00 31.69 2.69
195 196 5.064707 CGGCGAAAGATTCTTCCTATTTCAA 59.935 40.000 0.00 0.00 31.69 2.69
197 198 4.809426 TCGGCGAAAGATTCTTCCTATTTC 59.191 41.667 7.35 0.00 0.00 2.17
198 199 4.571176 GTCGGCGAAAGATTCTTCCTATTT 59.429 41.667 12.92 0.00 0.00 1.40
200 201 3.718815 GTCGGCGAAAGATTCTTCCTAT 58.281 45.455 12.92 0.00 0.00 2.57
201 202 2.479049 CGTCGGCGAAAGATTCTTCCTA 60.479 50.000 12.92 0.00 41.33 2.94
202 203 1.736032 CGTCGGCGAAAGATTCTTCCT 60.736 52.381 12.92 0.00 41.33 3.36
204 205 1.320852 GACGTCGGCGAAAGATTCTTC 59.679 52.381 20.03 0.00 42.00 2.87
205 206 1.336517 TGACGTCGGCGAAAGATTCTT 60.337 47.619 20.03 0.00 42.00 2.52
206 207 0.242825 TGACGTCGGCGAAAGATTCT 59.757 50.000 20.03 0.00 42.00 2.40
207 208 1.255600 GATGACGTCGGCGAAAGATTC 59.744 52.381 20.03 1.55 42.00 2.52
208 209 1.135083 AGATGACGTCGGCGAAAGATT 60.135 47.619 20.03 0.00 42.00 2.40
209 210 0.456221 AGATGACGTCGGCGAAAGAT 59.544 50.000 20.03 1.05 42.00 2.40
210 211 0.242825 AAGATGACGTCGGCGAAAGA 59.757 50.000 20.03 0.00 42.00 2.52
213 214 1.504359 AAAAAGATGACGTCGGCGAA 58.496 45.000 20.03 3.69 42.00 4.70
214 215 3.204505 AAAAAGATGACGTCGGCGA 57.795 47.368 20.03 4.99 42.00 5.54
229 230 3.644738 ACGGAGGAAGTAGGAGACAAAAA 59.355 43.478 0.00 0.00 0.00 1.94
230 231 3.236896 ACGGAGGAAGTAGGAGACAAAA 58.763 45.455 0.00 0.00 0.00 2.44
231 232 2.885616 ACGGAGGAAGTAGGAGACAAA 58.114 47.619 0.00 0.00 0.00 2.83
232 233 2.599408 ACGGAGGAAGTAGGAGACAA 57.401 50.000 0.00 0.00 0.00 3.18
233 234 2.444421 GAACGGAGGAAGTAGGAGACA 58.556 52.381 0.00 0.00 0.00 3.41
234 235 1.750206 GGAACGGAGGAAGTAGGAGAC 59.250 57.143 0.00 0.00 0.00 3.36
235 236 1.639628 AGGAACGGAGGAAGTAGGAGA 59.360 52.381 0.00 0.00 0.00 3.71
237 238 3.744940 TTAGGAACGGAGGAAGTAGGA 57.255 47.619 0.00 0.00 0.00 2.94
238 239 6.667558 ATATTTAGGAACGGAGGAAGTAGG 57.332 41.667 0.00 0.00 0.00 3.18
239 240 7.985752 ACAAATATTTAGGAACGGAGGAAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
240 241 7.854337 ACAAATATTTAGGAACGGAGGAAGTA 58.146 34.615 0.00 0.00 0.00 2.24
241 242 6.718294 ACAAATATTTAGGAACGGAGGAAGT 58.282 36.000 0.00 0.00 0.00 3.01
242 243 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
243 244 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
244 245 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
245 246 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
247 248 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
285 286 9.739276 ACTCATTTTTCTTCCTATGTAATCACA 57.261 29.630 0.00 0.00 39.52 3.58
287 288 9.958180 TCACTCATTTTTCTTCCTATGTAATCA 57.042 29.630 0.00 0.00 0.00 2.57
373 374 8.548025 CCCCCATTCCTAAATATTTGTCTTTTT 58.452 33.333 11.05 0.00 0.00 1.94
374 375 8.089625 CCCCCATTCCTAAATATTTGTCTTTT 57.910 34.615 11.05 0.00 0.00 2.27
375 376 7.675161 CCCCCATTCCTAAATATTTGTCTTT 57.325 36.000 11.05 0.00 0.00 2.52
396 397 2.507407 TTCATGCAAACTACTCCCCC 57.493 50.000 0.00 0.00 0.00 5.40
410 411 8.490355 CATTGATCATGATTTCTTGCATTCATG 58.510 33.333 10.14 13.53 44.29 3.07
411 412 8.204160 ACATTGATCATGATTTCTTGCATTCAT 58.796 29.630 10.14 0.00 36.24 2.57
412 413 7.491048 CACATTGATCATGATTTCTTGCATTCA 59.509 33.333 10.14 0.00 36.24 2.57
413 414 7.491372 ACACATTGATCATGATTTCTTGCATTC 59.509 33.333 10.14 0.00 36.24 2.67
414 415 7.277760 CACACATTGATCATGATTTCTTGCATT 59.722 33.333 10.14 0.00 36.24 3.56
415 416 6.756542 CACACATTGATCATGATTTCTTGCAT 59.243 34.615 10.14 0.00 36.24 3.96
417 418 5.005394 GCACACATTGATCATGATTTCTTGC 59.995 40.000 10.14 8.81 36.24 4.01
419 420 6.330278 CAGCACACATTGATCATGATTTCTT 58.670 36.000 10.14 0.00 36.24 2.52
420 421 5.678871 GCAGCACACATTGATCATGATTTCT 60.679 40.000 10.14 0.00 36.24 2.52
421 422 4.503007 GCAGCACACATTGATCATGATTTC 59.497 41.667 10.14 0.00 36.24 2.17
422 423 4.081917 TGCAGCACACATTGATCATGATTT 60.082 37.500 10.14 0.00 36.24 2.17
423 424 3.445805 TGCAGCACACATTGATCATGATT 59.554 39.130 10.14 0.00 36.24 2.57
425 426 2.438411 TGCAGCACACATTGATCATGA 58.562 42.857 0.00 0.00 36.24 3.07
427 428 2.481276 GCATGCAGCACACATTGATCAT 60.481 45.455 14.21 0.00 44.79 2.45
428 429 1.135228 GCATGCAGCACACATTGATCA 60.135 47.619 14.21 0.00 44.79 2.92
430 431 3.733236 GCATGCAGCACACATTGAT 57.267 47.368 14.21 0.00 44.79 2.57
440 441 1.065273 CGGAGGAAATGCATGCAGC 59.935 57.895 26.69 16.84 45.96 5.25
442 443 1.314534 CCACGGAGGAAATGCATGCA 61.315 55.000 25.04 25.04 41.22 3.96
443 444 1.031571 TCCACGGAGGAAATGCATGC 61.032 55.000 11.82 11.82 45.65 4.06
454 455 1.066303 GAGTAGCAGTCATCCACGGAG 59.934 57.143 0.00 0.00 0.00 4.63
455 456 1.103803 GAGTAGCAGTCATCCACGGA 58.896 55.000 0.00 0.00 0.00 4.69
458 459 1.410882 GAGGGAGTAGCAGTCATCCAC 59.589 57.143 0.00 0.00 33.24 4.02
459 460 1.689575 GGAGGGAGTAGCAGTCATCCA 60.690 57.143 0.00 0.00 33.24 3.41
460 461 1.044611 GGAGGGAGTAGCAGTCATCC 58.955 60.000 0.00 0.00 0.00 3.51
461 462 1.781786 TGGAGGGAGTAGCAGTCATC 58.218 55.000 0.00 0.00 0.00 2.92
462 463 2.485966 ATGGAGGGAGTAGCAGTCAT 57.514 50.000 0.00 0.00 0.00 3.06
463 464 2.111384 GAATGGAGGGAGTAGCAGTCA 58.889 52.381 0.00 0.00 0.00 3.41
464 465 1.414550 GGAATGGAGGGAGTAGCAGTC 59.585 57.143 0.00 0.00 0.00 3.51
465 466 1.273838 TGGAATGGAGGGAGTAGCAGT 60.274 52.381 0.00 0.00 0.00 4.40
467 468 1.965414 TTGGAATGGAGGGAGTAGCA 58.035 50.000 0.00 0.00 0.00 3.49
470 471 5.163343 CGAGTAATTTGGAATGGAGGGAGTA 60.163 44.000 0.00 0.00 0.00 2.59
471 472 4.384208 CGAGTAATTTGGAATGGAGGGAGT 60.384 45.833 0.00 0.00 0.00 3.85
472 473 4.130118 CGAGTAATTTGGAATGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
473 474 3.684413 GCGAGTAATTTGGAATGGAGGGA 60.684 47.826 0.00 0.00 0.00 4.20
474 475 2.618709 GCGAGTAATTTGGAATGGAGGG 59.381 50.000 0.00 0.00 0.00 4.30
475 476 2.618709 GGCGAGTAATTTGGAATGGAGG 59.381 50.000 0.00 0.00 0.00 4.30
476 477 2.287915 CGGCGAGTAATTTGGAATGGAG 59.712 50.000 0.00 0.00 0.00 3.86
477 478 2.285083 CGGCGAGTAATTTGGAATGGA 58.715 47.619 0.00 0.00 0.00 3.41
478 479 1.268539 GCGGCGAGTAATTTGGAATGG 60.269 52.381 12.98 0.00 0.00 3.16
480 481 1.670811 CAGCGGCGAGTAATTTGGAAT 59.329 47.619 12.98 0.00 0.00 3.01
481 482 1.083489 CAGCGGCGAGTAATTTGGAA 58.917 50.000 12.98 0.00 0.00 3.53
485 486 2.097466 CCATTTCAGCGGCGAGTAATTT 59.903 45.455 12.98 0.00 0.00 1.82
486 487 1.670811 CCATTTCAGCGGCGAGTAATT 59.329 47.619 12.98 0.00 0.00 1.40
487 488 1.134521 TCCATTTCAGCGGCGAGTAAT 60.135 47.619 12.98 4.90 0.00 1.89
488 489 0.248012 TCCATTTCAGCGGCGAGTAA 59.752 50.000 12.98 2.32 0.00 2.24
489 490 0.464036 ATCCATTTCAGCGGCGAGTA 59.536 50.000 12.98 0.00 0.00 2.59
490 491 1.091771 CATCCATTTCAGCGGCGAGT 61.092 55.000 12.98 0.00 0.00 4.18
491 492 1.091771 ACATCCATTTCAGCGGCGAG 61.092 55.000 12.98 1.28 0.00 5.03
492 493 0.176910 TACATCCATTTCAGCGGCGA 59.823 50.000 12.98 0.00 0.00 5.54
494 495 2.498167 AGATACATCCATTTCAGCGGC 58.502 47.619 0.00 0.00 0.00 6.53
496 497 6.219473 AGTTCTAGATACATCCATTTCAGCG 58.781 40.000 0.00 0.00 0.00 5.18
502 503 9.851686 TGCATTTTAGTTCTAGATACATCCATT 57.148 29.630 0.00 0.00 0.00 3.16
523 524 9.208022 GCACGTATGGATGTATATATATGCATT 57.792 33.333 24.44 12.55 38.78 3.56
524 525 7.542130 CGCACGTATGGATGTATATATATGCAT 59.458 37.037 23.34 23.34 40.86 3.96
525 526 6.861055 CGCACGTATGGATGTATATATATGCA 59.139 38.462 14.81 14.81 32.96 3.96
526 527 7.060748 GTCGCACGTATGGATGTATATATATGC 59.939 40.741 5.44 4.69 0.00 3.14
528 529 8.161699 TGTCGCACGTATGGATGTATATATAT 57.838 34.615 0.00 0.00 0.00 0.86
529 530 7.556733 TGTCGCACGTATGGATGTATATATA 57.443 36.000 0.00 0.00 0.00 0.86
531 532 5.883503 TGTCGCACGTATGGATGTATATA 57.116 39.130 0.00 0.00 0.00 0.86
532 533 4.776795 TGTCGCACGTATGGATGTATAT 57.223 40.909 0.00 0.00 0.00 0.86
533 534 4.037089 ACTTGTCGCACGTATGGATGTATA 59.963 41.667 0.00 0.00 0.00 1.47
534 535 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
535 536 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
536 537 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
538 539 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
539 540 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
541 542 4.561213 TCTGAATTACTTGTCGCACGTATG 59.439 41.667 0.00 0.00 0.00 2.39
544 545 3.021269 TCTGAATTACTTGTCGCACGT 57.979 42.857 0.00 0.00 0.00 4.49
547 548 4.627058 TCTGTTCTGAATTACTTGTCGCA 58.373 39.130 0.00 0.00 0.00 5.10
548 549 4.923871 TCTCTGTTCTGAATTACTTGTCGC 59.076 41.667 0.00 0.00 0.00 5.19
549 550 6.382608 TCTCTCTGTTCTGAATTACTTGTCG 58.617 40.000 0.00 0.00 0.00 4.35
550 551 7.375053 ACTCTCTCTGTTCTGAATTACTTGTC 58.625 38.462 0.00 0.00 0.00 3.18
551 552 7.296628 ACTCTCTCTGTTCTGAATTACTTGT 57.703 36.000 0.00 0.00 0.00 3.16
556 557 9.415008 AGCTAATACTCTCTCTGTTCTGAATTA 57.585 33.333 0.00 0.00 0.00 1.40
557 558 8.305046 AGCTAATACTCTCTCTGTTCTGAATT 57.695 34.615 0.00 0.00 0.00 2.17
558 559 7.896383 AGCTAATACTCTCTCTGTTCTGAAT 57.104 36.000 0.00 0.00 0.00 2.57
559 560 8.809468 TTAGCTAATACTCTCTCTGTTCTGAA 57.191 34.615 0.86 0.00 0.00 3.02
560 561 8.988546 ATTAGCTAATACTCTCTCTGTTCTGA 57.011 34.615 17.47 0.00 0.00 3.27
628 629 5.828299 TGATTCAAGTCCGAACACTTTTT 57.172 34.783 0.00 0.00 34.17 1.94
629 630 5.048713 GGATGATTCAAGTCCGAACACTTTT 60.049 40.000 0.00 0.00 34.17 2.27
630 631 4.455877 GGATGATTCAAGTCCGAACACTTT 59.544 41.667 0.00 0.00 34.17 2.66
631 632 4.003648 GGATGATTCAAGTCCGAACACTT 58.996 43.478 0.00 0.00 37.05 3.16
632 633 3.600388 GGATGATTCAAGTCCGAACACT 58.400 45.455 0.00 0.00 0.00 3.55
641 642 3.845781 ATAGGCACGGATGATTCAAGT 57.154 42.857 0.00 0.00 0.00 3.16
643 644 5.290493 AGTAATAGGCACGGATGATTCAA 57.710 39.130 0.00 0.00 0.00 2.69
644 645 4.955811 AGTAATAGGCACGGATGATTCA 57.044 40.909 0.00 0.00 0.00 2.57
645 646 7.907214 ATTTAGTAATAGGCACGGATGATTC 57.093 36.000 0.00 0.00 0.00 2.52
646 647 7.390718 GGAATTTAGTAATAGGCACGGATGATT 59.609 37.037 0.00 0.00 0.00 2.57
647 648 6.879458 GGAATTTAGTAATAGGCACGGATGAT 59.121 38.462 0.00 0.00 0.00 2.45
648 649 6.042781 AGGAATTTAGTAATAGGCACGGATGA 59.957 38.462 0.00 0.00 0.00 2.92
649 650 6.147821 CAGGAATTTAGTAATAGGCACGGATG 59.852 42.308 0.00 0.00 0.00 3.51
650 651 6.183361 ACAGGAATTTAGTAATAGGCACGGAT 60.183 38.462 0.00 0.00 0.00 4.18
651 652 5.129815 ACAGGAATTTAGTAATAGGCACGGA 59.870 40.000 0.00 0.00 0.00 4.69
653 654 5.175126 CGACAGGAATTTAGTAATAGGCACG 59.825 44.000 0.00 0.00 0.00 5.34
655 656 5.607477 CCGACAGGAATTTAGTAATAGGCA 58.393 41.667 0.00 0.00 41.02 4.75
656 657 4.451435 GCCGACAGGAATTTAGTAATAGGC 59.549 45.833 0.00 0.00 41.02 3.93
657 658 5.607477 TGCCGACAGGAATTTAGTAATAGG 58.393 41.667 0.00 0.00 41.02 2.57
679 680 8.904099 AAATAGGATATTAGAAAACGGTCCTG 57.096 34.615 0.00 0.00 36.18 3.86
680 681 9.916360 AAAAATAGGATATTAGAAAACGGTCCT 57.084 29.630 0.00 0.00 38.17 3.85
827 5161 2.144450 AGGAGGTTCTGGAAGGGTTTT 58.856 47.619 0.00 0.00 0.00 2.43
859 5196 2.437413 GGAAAGCTTCTACCCCAGTTG 58.563 52.381 0.00 0.00 0.00 3.16
875 5212 4.342862 TTCGGCATTCATTTTTGGGAAA 57.657 36.364 0.00 0.00 0.00 3.13
914 5252 1.543607 CACAGAGGAGAGTGAGAGCA 58.456 55.000 0.00 0.00 37.97 4.26
915 5253 0.173255 GCACAGAGGAGAGTGAGAGC 59.827 60.000 0.00 0.00 37.97 4.09
942 5286 3.950397 TCATTGTGACCCTAATGTGTCC 58.050 45.455 0.00 0.00 36.09 4.02
954 5298 0.110373 GGACGGCGTTTCATTGTGAC 60.110 55.000 16.19 0.00 0.00 3.67
975 5322 1.293179 CAGGATGGAGTGACGCACA 59.707 57.895 11.58 0.00 36.74 4.57
1128 7872 4.996434 AGGAAAGCTGCGCTGCGT 62.996 61.111 29.77 25.50 39.62 5.24
1140 7884 4.752879 CGGAAGCGGCGGAGGAAA 62.753 66.667 9.78 0.00 0.00 3.13
1281 8025 1.676746 CGAAGTCACCTCCCTCGATA 58.323 55.000 0.00 0.00 0.00 2.92
1293 8037 1.258445 GGAAGGAGAGGGCGAAGTCA 61.258 60.000 0.00 0.00 0.00 3.41
1357 8173 2.045926 GTTGCGGCAGTCCAGGAT 60.046 61.111 1.67 0.00 0.00 3.24
1767 8586 3.741344 CCTTCTCAATGACGTCGAAAGTT 59.259 43.478 11.62 0.00 0.00 2.66
1769 8588 2.668457 CCCTTCTCAATGACGTCGAAAG 59.332 50.000 11.62 5.94 0.00 2.62
2067 8886 2.398554 CGGGCAATTCACGTCCAGG 61.399 63.158 0.00 0.00 0.00 4.45
2165 8984 5.363868 AGCATATTGTAGCTTACAGGAGACA 59.636 40.000 0.00 0.00 40.24 3.41
2166 8985 5.848406 AGCATATTGTAGCTTACAGGAGAC 58.152 41.667 0.00 0.00 40.24 3.36
2167 8986 7.597288 TTAGCATATTGTAGCTTACAGGAGA 57.403 36.000 0.00 0.00 42.05 3.71
2169 8988 8.210946 ACATTTAGCATATTGTAGCTTACAGGA 58.789 33.333 0.00 0.00 42.05 3.86
2171 8990 9.265901 AGACATTTAGCATATTGTAGCTTACAG 57.734 33.333 0.00 0.00 42.05 2.74
2172 8991 9.261180 GAGACATTTAGCATATTGTAGCTTACA 57.739 33.333 0.00 0.00 42.05 2.41
2173 8992 8.713271 GGAGACATTTAGCATATTGTAGCTTAC 58.287 37.037 0.00 0.00 42.05 2.34
2174 8993 8.651389 AGGAGACATTTAGCATATTGTAGCTTA 58.349 33.333 0.00 0.00 42.05 3.09
2175 8994 7.443575 CAGGAGACATTTAGCATATTGTAGCTT 59.556 37.037 0.00 0.00 42.05 3.74
2178 8997 9.764363 TTACAGGAGACATTTAGCATATTGTAG 57.236 33.333 0.00 0.00 0.00 2.74
2205 9024 6.811665 CAGTTCAGCACATCATTGATCAAAAT 59.188 34.615 13.09 6.55 0.00 1.82
2240 9178 6.259387 TCATCATAAGCTGAAATGTAGTGCTG 59.741 38.462 0.00 0.00 37.44 4.41
2241 9179 6.259608 GTCATCATAAGCTGAAATGTAGTGCT 59.740 38.462 0.00 0.00 37.44 4.40
2242 9180 6.259608 AGTCATCATAAGCTGAAATGTAGTGC 59.740 38.462 0.00 0.00 37.44 4.40
2243 9181 7.783090 AGTCATCATAAGCTGAAATGTAGTG 57.217 36.000 0.00 0.00 37.44 2.74
2244 9182 8.918116 TCTAGTCATCATAAGCTGAAATGTAGT 58.082 33.333 0.00 0.00 37.44 2.73
2266 9204 2.093816 TCAGCTCTGCCACACAATCTAG 60.094 50.000 0.00 0.00 0.00 2.43
2291 9229 3.191162 TGAGCAAATGACATCCTTTTCCG 59.809 43.478 0.00 0.00 0.00 4.30
2310 9249 6.766429 TGTCTCAGGAATTCATATGGATGAG 58.234 40.000 7.93 4.53 43.03 2.90
2327 9266 0.312102 TCGCGGCTATCATGTCTCAG 59.688 55.000 6.13 0.00 0.00 3.35
2395 9334 2.526304 ACTAAGACTGCAAGCACGAA 57.474 45.000 0.00 0.00 37.60 3.85
2397 9336 1.195448 CCAACTAAGACTGCAAGCACG 59.805 52.381 0.00 0.00 37.60 5.34
2425 9364 5.771666 CCATACAGATAATGGTGGCAGAATT 59.228 40.000 0.00 0.00 39.30 2.17
2426 9365 5.319453 CCATACAGATAATGGTGGCAGAAT 58.681 41.667 0.00 0.00 39.30 2.40
2442 9381 4.036852 TCGAGCAATAGAGTGACCATACAG 59.963 45.833 0.00 0.00 0.00 2.74
2462 9401 8.687242 CATGCTAAATACTCCTATATTCCTCGA 58.313 37.037 0.00 0.00 0.00 4.04
2463 9402 7.436673 GCATGCTAAATACTCCTATATTCCTCG 59.563 40.741 11.37 0.00 0.00 4.63
2469 9408 9.799106 ACAAAAGCATGCTAAATACTCCTATAT 57.201 29.630 23.00 0.00 0.00 0.86
2470 9409 9.056005 CACAAAAGCATGCTAAATACTCCTATA 57.944 33.333 23.00 0.00 0.00 1.31
2471 9410 7.775093 TCACAAAAGCATGCTAAATACTCCTAT 59.225 33.333 23.00 0.00 0.00 2.57
2472 9411 7.109501 TCACAAAAGCATGCTAAATACTCCTA 58.890 34.615 23.00 0.00 0.00 2.94
2474 9413 6.194796 TCACAAAAGCATGCTAAATACTCC 57.805 37.500 23.00 0.00 0.00 3.85
2475 9414 7.756722 ACATTCACAAAAGCATGCTAAATACTC 59.243 33.333 23.00 0.00 0.00 2.59
2507 9455 8.696043 ATCATACAAGCAATATAAAAGCTCCA 57.304 30.769 0.00 0.00 37.70 3.86
2541 9490 7.757097 ACTGATACTGAAATTGACACGATAC 57.243 36.000 0.00 0.00 0.00 2.24
2557 9506 4.895889 TGAGGATTCGGATGAACTGATACT 59.104 41.667 0.00 0.00 36.81 2.12
2573 9522 9.528489 TTAAGTTAAGCACCTAAATTGAGGATT 57.472 29.630 16.52 9.41 39.15 3.01
2574 9523 9.178758 CTTAAGTTAAGCACCTAAATTGAGGAT 57.821 33.333 16.52 1.64 39.15 3.24
2576 9525 7.393515 ACCTTAAGTTAAGCACCTAAATTGAGG 59.606 37.037 15.95 7.38 43.14 3.86
2585 9534 4.062991 CGACAACCTTAAGTTAAGCACCT 58.937 43.478 15.95 0.05 36.18 4.00
2608 9557 2.344592 ACCCCAGACAGAAATGTACCA 58.655 47.619 0.00 0.00 0.00 3.25
2610 9559 3.506067 CCAAACCCCAGACAGAAATGTAC 59.494 47.826 0.00 0.00 0.00 2.90
2621 9570 1.779061 GCCAGACTCCAAACCCCAGA 61.779 60.000 0.00 0.00 0.00 3.86
2715 9666 3.084786 ACATTAGGCCAAGTTCTTCAGC 58.915 45.455 5.01 0.00 0.00 4.26
2854 9806 8.934023 ATTAACTGAAGAAATAAACCTGGACA 57.066 30.769 0.00 0.00 0.00 4.02
2969 9930 3.945285 TCAAAACCTGAACCAGAACTGTC 59.055 43.478 1.18 0.00 32.44 3.51
3022 9993 1.255882 TGGAATTTGGATGCGCTGTT 58.744 45.000 9.73 0.00 0.00 3.16
3025 9996 0.819582 CCTTGGAATTTGGATGCGCT 59.180 50.000 9.73 0.00 0.00 5.92
3027 9998 1.818060 TGACCTTGGAATTTGGATGCG 59.182 47.619 0.00 0.00 0.00 4.73
3098 10070 0.036577 AGCACATCCTGACTCACTGC 60.037 55.000 0.00 0.00 0.00 4.40
3107 10079 1.085091 GACAGCTTCAGCACATCCTG 58.915 55.000 0.75 0.00 45.16 3.86
3108 10080 0.689055 TGACAGCTTCAGCACATCCT 59.311 50.000 0.75 0.00 45.16 3.24
3109 10081 1.669779 GATGACAGCTTCAGCACATCC 59.330 52.381 16.05 5.58 40.63 3.51
3110 10082 1.669779 GGATGACAGCTTCAGCACATC 59.330 52.381 17.49 17.49 42.92 3.06
3111 10083 1.681166 GGGATGACAGCTTCAGCACAT 60.681 52.381 13.53 4.01 44.10 3.21
3112 10084 0.321919 GGGATGACAGCTTCAGCACA 60.322 55.000 13.53 0.00 44.10 4.57
3113 10085 1.028868 GGGGATGACAGCTTCAGCAC 61.029 60.000 13.53 10.71 43.93 4.40
3114 10086 1.300963 GGGGATGACAGCTTCAGCA 59.699 57.895 13.53 0.00 42.92 4.41
3115 10087 1.817099 CGGGGATGACAGCTTCAGC 60.817 63.158 5.83 5.83 40.16 4.26
3116 10088 0.036010 AACGGGGATGACAGCTTCAG 60.036 55.000 5.15 0.00 37.77 3.02
3117 10089 1.271856 TAACGGGGATGACAGCTTCA 58.728 50.000 1.85 1.85 39.11 3.02
3118 10090 2.158957 TCATAACGGGGATGACAGCTTC 60.159 50.000 0.00 0.00 0.00 3.86
3119 10091 1.837439 TCATAACGGGGATGACAGCTT 59.163 47.619 0.00 0.00 0.00 3.74
3120 10092 1.414181 CTCATAACGGGGATGACAGCT 59.586 52.381 0.00 0.00 0.00 4.24
3121 10093 1.541233 CCTCATAACGGGGATGACAGC 60.541 57.143 0.00 0.00 0.00 4.40
3122 10094 1.762957 ACCTCATAACGGGGATGACAG 59.237 52.381 0.00 0.00 0.00 3.51
3123 10095 1.484653 CACCTCATAACGGGGATGACA 59.515 52.381 0.00 0.00 0.00 3.58
3124 10096 1.810412 GCACCTCATAACGGGGATGAC 60.810 57.143 0.00 0.00 0.00 3.06
3125 10097 0.468226 GCACCTCATAACGGGGATGA 59.532 55.000 0.00 0.00 0.00 2.92
3126 10098 0.469917 AGCACCTCATAACGGGGATG 59.530 55.000 0.00 0.00 0.00 3.51
3127 10099 0.469917 CAGCACCTCATAACGGGGAT 59.530 55.000 0.00 0.00 0.00 3.85
3128 10100 0.616395 TCAGCACCTCATAACGGGGA 60.616 55.000 0.00 0.00 0.00 4.81
3129 10101 0.251916 TTCAGCACCTCATAACGGGG 59.748 55.000 0.00 0.00 0.00 5.73
3130 10102 1.656652 CTTCAGCACCTCATAACGGG 58.343 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.