Multiple sequence alignment - TraesCS1B01G111400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G111400 chr1B 100.000 3736 0 0 1 3736 129509512 129505777 0.000000e+00 6900
1 TraesCS1B01G111400 chr1B 79.259 270 30 7 3109 3376 273619071 273619316 8.300000e-37 165
2 TraesCS1B01G111400 chr1B 77.108 332 35 11 3109 3423 273484506 273484813 1.800000e-33 154
3 TraesCS1B01G111400 chr1B 79.899 199 37 3 664 860 350885310 350885507 3.890000e-30 143
4 TraesCS1B01G111400 chr1A 89.349 1812 105 46 991 2782 96449550 96451293 0.000000e+00 2196
5 TraesCS1B01G111400 chr1A 80.363 331 37 11 2767 3092 96451313 96451620 3.750000e-55 226
6 TraesCS1B01G111400 chr1A 92.929 99 5 1 861 957 96449450 96449548 3.890000e-30 143
7 TraesCS1B01G111400 chr1D 91.946 1192 59 16 1594 2782 79055689 79054532 0.000000e+00 1635
8 TraesCS1B01G111400 chr1D 89.255 577 43 14 920 1480 79056508 79055935 0.000000e+00 704
9 TraesCS1B01G111400 chr1D 85.219 663 61 16 3106 3736 79052971 79052314 0.000000e+00 647
10 TraesCS1B01G111400 chr1D 87.117 326 26 8 2773 3093 79054508 79054194 4.590000e-94 355
11 TraesCS1B01G111400 chr2D 82.937 715 87 14 164 860 365509817 365510514 2.470000e-171 612
12 TraesCS1B01G111400 chr2D 84.456 193 26 2 3186 3376 16053679 16053869 1.770000e-43 187
13 TraesCS1B01G111400 chr2D 83.163 196 26 5 3183 3374 89225546 89225738 4.960000e-39 172
14 TraesCS1B01G111400 chr2D 82.653 196 26 6 3183 3374 104867057 104866866 2.310000e-37 167
15 TraesCS1B01G111400 chr3D 83.976 337 42 10 3110 3435 512741912 512742247 2.800000e-81 313
16 TraesCS1B01G111400 chr3D 79.703 202 31 9 664 860 593687560 593687756 1.810000e-28 137
17 TraesCS1B01G111400 chr3B 85.821 268 33 4 3107 3372 707031404 707031668 2.840000e-71 279
18 TraesCS1B01G111400 chr2B 87.065 201 22 4 3179 3376 28318605 28318804 1.350000e-54 224
19 TraesCS1B01G111400 chr2B 77.949 195 38 5 664 855 106080412 106080604 2.360000e-22 117
20 TraesCS1B01G111400 chr5D 84.239 184 25 3 3190 3371 534762393 534762574 3.840000e-40 176
21 TraesCS1B01G111400 chr5D 82.902 193 30 3 665 855 369006741 369006932 1.780000e-38 171
22 TraesCS1B01G111400 chr5D 82.292 192 33 1 665 855 368999547 368999738 8.300000e-37 165
23 TraesCS1B01G111400 chr4B 81.281 203 34 2 3172 3372 538274297 538274497 1.070000e-35 161
24 TraesCS1B01G111400 chr6D 88.525 122 10 4 746 865 456113550 456113431 1.080000e-30 145
25 TraesCS1B01G111400 chr7A 86.842 114 13 2 749 861 17976237 17976125 3.920000e-25 126
26 TraesCS1B01G111400 chr6B 86.207 116 14 2 749 863 688184339 688184225 1.410000e-24 124
27 TraesCS1B01G111400 chr7B 88.235 102 12 0 759 860 33583744 33583643 5.070000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G111400 chr1B 129505777 129509512 3735 True 6900.00 6900 100.00000 1 3736 1 chr1B.!!$R1 3735
1 TraesCS1B01G111400 chr1A 96449450 96451620 2170 False 855.00 2196 87.54700 861 3092 3 chr1A.!!$F1 2231
2 TraesCS1B01G111400 chr1D 79052314 79056508 4194 True 835.25 1635 88.38425 920 3736 4 chr1D.!!$R1 2816
3 TraesCS1B01G111400 chr2D 365509817 365510514 697 False 612.00 612 82.93700 164 860 1 chr2D.!!$F3 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.034896 GAAGGAGCTGGACGGAACAA 59.965 55.0 0.0 0.0 0.00 2.83 F
76 77 0.035458 AGGAGCTGGACGGAACAAAG 59.965 55.0 0.0 0.0 0.00 2.77 F
470 487 0.038599 TCTAGCACCACGTACTCCCA 59.961 55.0 0.0 0.0 0.00 4.37 F
602 619 0.178873 TAGCCTCCCACTTTCCCAGT 60.179 55.0 0.0 0.0 35.35 4.00 F
2153 2348 0.325933 CCATCCTTCAGCAGTCACCA 59.674 55.0 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1886 0.040067 CTGTTCTGTTTGCGCCTTCC 60.040 55.000 4.18 0.00 0.00 3.46 R
1699 1893 3.319122 AGGAACCATTCTGTTCTGTTTGC 59.681 43.478 4.16 0.00 43.31 3.68 R
2341 2537 0.036010 CCCGAAGCTCACCTGATTGT 60.036 55.000 0.00 0.00 0.00 2.71 R
2437 2636 0.109781 CCATGCACGTGTAACAAGCC 60.110 55.000 18.38 0.00 35.65 4.35 R
3632 5112 0.104671 AACTTTTGGTGCATGCGCTT 59.895 45.000 28.86 12.75 39.64 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.816012 GGAGCGCTCCCCTTAGTC 59.184 66.667 40.99 17.11 43.94 2.59
19 20 2.413765 GAGCGCTCCCCTTAGTCG 59.586 66.667 27.22 0.00 0.00 4.18
20 21 3.140225 GAGCGCTCCCCTTAGTCGG 62.140 68.421 27.22 0.00 0.00 4.79
21 22 3.145551 GCGCTCCCCTTAGTCGGA 61.146 66.667 0.00 0.00 0.00 4.55
23 24 2.491022 CGCTCCCCTTAGTCGGAGG 61.491 68.421 12.62 2.36 45.03 4.30
24 25 2.798364 GCTCCCCTTAGTCGGAGGC 61.798 68.421 12.62 4.05 45.03 4.70
25 26 2.441532 TCCCCTTAGTCGGAGGCG 60.442 66.667 0.00 0.00 36.95 5.52
26 27 2.441532 CCCCTTAGTCGGAGGCGA 60.442 66.667 0.00 0.00 36.95 5.54
27 28 2.056223 CCCCTTAGTCGGAGGCGAA 61.056 63.158 0.00 0.00 36.95 4.70
28 29 1.610554 CCCCTTAGTCGGAGGCGAAA 61.611 60.000 0.00 0.00 36.95 3.46
29 30 0.179108 CCCTTAGTCGGAGGCGAAAG 60.179 60.000 0.00 0.00 36.95 2.62
42 43 3.616935 CGAAAGCACATGATGGCAG 57.383 52.632 0.00 0.00 0.00 4.85
43 44 1.089112 CGAAAGCACATGATGGCAGA 58.911 50.000 0.00 0.00 0.00 4.26
44 45 1.063616 CGAAAGCACATGATGGCAGAG 59.936 52.381 0.00 0.00 0.00 3.35
45 46 1.404391 GAAAGCACATGATGGCAGAGG 59.596 52.381 0.00 0.00 0.00 3.69
46 47 0.622136 AAGCACATGATGGCAGAGGA 59.378 50.000 0.00 0.00 0.00 3.71
47 48 0.622136 AGCACATGATGGCAGAGGAA 59.378 50.000 0.00 0.00 0.00 3.36
48 49 1.022735 GCACATGATGGCAGAGGAAG 58.977 55.000 0.00 0.00 0.00 3.46
49 50 1.022735 CACATGATGGCAGAGGAAGC 58.977 55.000 0.00 0.00 0.00 3.86
50 51 0.463295 ACATGATGGCAGAGGAAGCG 60.463 55.000 0.00 0.00 0.00 4.68
51 52 1.525535 ATGATGGCAGAGGAAGCGC 60.526 57.895 0.00 0.00 0.00 5.92
52 53 3.267860 GATGGCAGAGGAAGCGCG 61.268 66.667 0.00 0.00 0.00 6.86
53 54 4.845580 ATGGCAGAGGAAGCGCGG 62.846 66.667 8.83 0.00 0.00 6.46
57 58 4.082523 CAGAGGAAGCGCGGGGAA 62.083 66.667 8.83 0.00 0.00 3.97
58 59 3.775654 AGAGGAAGCGCGGGGAAG 61.776 66.667 8.83 0.00 0.00 3.46
59 60 4.840005 GAGGAAGCGCGGGGAAGG 62.840 72.222 8.83 0.00 0.00 3.46
61 62 4.840005 GGAAGCGCGGGGAAGGAG 62.840 72.222 8.83 0.00 0.00 3.69
67 68 4.475135 GCGGGGAAGGAGCTGGAC 62.475 72.222 0.00 0.00 0.00 4.02
68 69 4.148825 CGGGGAAGGAGCTGGACG 62.149 72.222 0.00 0.00 0.00 4.79
69 70 3.787001 GGGGAAGGAGCTGGACGG 61.787 72.222 0.00 0.00 0.00 4.79
70 71 2.683933 GGGAAGGAGCTGGACGGA 60.684 66.667 0.00 0.00 0.00 4.69
71 72 2.291043 GGGAAGGAGCTGGACGGAA 61.291 63.158 0.00 0.00 0.00 4.30
72 73 1.079057 GGAAGGAGCTGGACGGAAC 60.079 63.158 0.00 0.00 0.00 3.62
73 74 1.671742 GAAGGAGCTGGACGGAACA 59.328 57.895 0.00 0.00 0.00 3.18
74 75 0.034896 GAAGGAGCTGGACGGAACAA 59.965 55.000 0.00 0.00 0.00 2.83
75 76 0.472471 AAGGAGCTGGACGGAACAAA 59.528 50.000 0.00 0.00 0.00 2.83
76 77 0.035458 AGGAGCTGGACGGAACAAAG 59.965 55.000 0.00 0.00 0.00 2.77
77 78 0.250338 GGAGCTGGACGGAACAAAGT 60.250 55.000 0.00 0.00 0.00 2.66
78 79 1.001633 GGAGCTGGACGGAACAAAGTA 59.998 52.381 0.00 0.00 0.00 2.24
79 80 2.338500 GAGCTGGACGGAACAAAGTAG 58.662 52.381 0.00 0.00 0.00 2.57
80 81 1.692519 AGCTGGACGGAACAAAGTAGT 59.307 47.619 0.00 0.00 0.00 2.73
81 82 1.798813 GCTGGACGGAACAAAGTAGTG 59.201 52.381 0.00 0.00 0.00 2.74
82 83 2.547218 GCTGGACGGAACAAAGTAGTGA 60.547 50.000 0.00 0.00 0.00 3.41
83 84 3.724374 CTGGACGGAACAAAGTAGTGAA 58.276 45.455 0.00 0.00 0.00 3.18
84 85 4.315803 CTGGACGGAACAAAGTAGTGAAT 58.684 43.478 0.00 0.00 0.00 2.57
85 86 4.062293 TGGACGGAACAAAGTAGTGAATG 58.938 43.478 0.00 0.00 0.00 2.67
86 87 3.435671 GGACGGAACAAAGTAGTGAATGG 59.564 47.826 0.00 0.00 0.00 3.16
87 88 4.312443 GACGGAACAAAGTAGTGAATGGA 58.688 43.478 0.00 0.00 0.00 3.41
88 89 4.315803 ACGGAACAAAGTAGTGAATGGAG 58.684 43.478 0.00 0.00 0.00 3.86
89 90 4.202326 ACGGAACAAAGTAGTGAATGGAGT 60.202 41.667 0.00 0.00 0.00 3.85
90 91 4.389077 CGGAACAAAGTAGTGAATGGAGTC 59.611 45.833 0.00 0.00 0.00 3.36
91 92 4.695928 GGAACAAAGTAGTGAATGGAGTCC 59.304 45.833 0.73 0.73 0.00 3.85
92 93 3.926616 ACAAAGTAGTGAATGGAGTCCG 58.073 45.455 4.30 0.00 0.00 4.79
93 94 3.262420 CAAAGTAGTGAATGGAGTCCGG 58.738 50.000 4.30 0.00 0.00 5.14
94 95 1.486211 AGTAGTGAATGGAGTCCGGG 58.514 55.000 0.00 0.00 0.00 5.73
95 96 1.006758 AGTAGTGAATGGAGTCCGGGA 59.993 52.381 0.00 0.00 0.00 5.14
96 97 1.829222 GTAGTGAATGGAGTCCGGGAA 59.171 52.381 0.00 0.00 0.00 3.97
97 98 0.905357 AGTGAATGGAGTCCGGGAAG 59.095 55.000 0.00 0.00 0.00 3.46
98 99 0.613777 GTGAATGGAGTCCGGGAAGT 59.386 55.000 0.00 0.00 0.00 3.01
99 100 1.829222 GTGAATGGAGTCCGGGAAGTA 59.171 52.381 0.00 0.00 0.00 2.24
100 101 1.829222 TGAATGGAGTCCGGGAAGTAC 59.171 52.381 0.00 0.00 0.00 2.73
101 102 1.829222 GAATGGAGTCCGGGAAGTACA 59.171 52.381 0.00 0.00 0.00 2.90
102 103 2.176247 ATGGAGTCCGGGAAGTACAT 57.824 50.000 0.00 0.00 0.00 2.29
103 104 1.191535 TGGAGTCCGGGAAGTACATG 58.808 55.000 0.00 0.00 0.00 3.21
104 105 0.179081 GGAGTCCGGGAAGTACATGC 60.179 60.000 0.00 0.00 0.00 4.06
105 106 0.824759 GAGTCCGGGAAGTACATGCT 59.175 55.000 0.00 0.00 0.00 3.79
106 107 0.824759 AGTCCGGGAAGTACATGCTC 59.175 55.000 0.00 0.00 0.00 4.26
107 108 0.535335 GTCCGGGAAGTACATGCTCA 59.465 55.000 0.00 0.00 0.00 4.26
108 109 1.066430 GTCCGGGAAGTACATGCTCAA 60.066 52.381 0.00 0.00 0.00 3.02
109 110 1.207089 TCCGGGAAGTACATGCTCAAG 59.793 52.381 0.00 0.00 0.00 3.02
110 111 1.207089 CCGGGAAGTACATGCTCAAGA 59.793 52.381 0.00 0.00 0.00 3.02
111 112 2.544685 CGGGAAGTACATGCTCAAGAG 58.455 52.381 0.00 0.00 0.00 2.85
122 123 3.082165 CTCAAGAGCAGGCCATCTG 57.918 57.895 5.01 0.00 46.03 2.90
123 124 0.464013 CTCAAGAGCAGGCCATCTGG 60.464 60.000 5.01 2.78 43.54 3.86
124 125 1.453379 CAAGAGCAGGCCATCTGGG 60.453 63.158 5.01 0.00 43.54 4.45
125 126 1.617536 AAGAGCAGGCCATCTGGGA 60.618 57.895 5.01 0.00 43.54 4.37
126 127 1.210204 AAGAGCAGGCCATCTGGGAA 61.210 55.000 5.01 0.00 43.54 3.97
127 128 1.153005 GAGCAGGCCATCTGGGAAG 60.153 63.158 5.01 0.00 43.54 3.46
128 129 2.123982 GCAGGCCATCTGGGAAGG 60.124 66.667 5.01 0.00 43.54 3.46
129 130 2.123982 CAGGCCATCTGGGAAGGC 60.124 66.667 5.01 5.36 44.53 4.35
130 131 3.801997 AGGCCATCTGGGAAGGCG 61.802 66.667 5.01 0.00 45.97 5.52
131 132 4.883354 GGCCATCTGGGAAGGCGG 62.883 72.222 0.00 0.00 45.97 6.13
133 134 4.883354 CCATCTGGGAAGGCGGCC 62.883 72.222 12.11 12.11 40.01 6.13
140 141 4.699522 GGAAGGCGGCCGTCAGTT 62.700 66.667 34.17 19.30 33.77 3.16
141 142 2.263540 GAAGGCGGCCGTCAGTTA 59.736 61.111 34.17 0.00 32.42 2.24
142 143 1.810030 GAAGGCGGCCGTCAGTTAG 60.810 63.158 34.17 0.00 32.42 2.34
143 144 3.952628 AAGGCGGCCGTCAGTTAGC 62.953 63.158 34.17 9.77 0.00 3.09
144 145 4.752879 GGCGGCCGTCAGTTAGCA 62.753 66.667 27.96 0.00 0.00 3.49
145 146 2.740826 GCGGCCGTCAGTTAGCAA 60.741 61.111 28.70 0.00 0.00 3.91
146 147 2.740714 GCGGCCGTCAGTTAGCAAG 61.741 63.158 28.70 0.00 0.00 4.01
147 148 1.080093 CGGCCGTCAGTTAGCAAGA 60.080 57.895 19.50 0.00 0.00 3.02
148 149 0.460284 CGGCCGTCAGTTAGCAAGAT 60.460 55.000 19.50 0.00 0.00 2.40
149 150 1.291132 GGCCGTCAGTTAGCAAGATC 58.709 55.000 0.00 0.00 0.00 2.75
150 151 1.405526 GGCCGTCAGTTAGCAAGATCA 60.406 52.381 0.00 0.00 0.00 2.92
151 152 2.346803 GCCGTCAGTTAGCAAGATCAA 58.653 47.619 0.00 0.00 0.00 2.57
152 153 2.939103 GCCGTCAGTTAGCAAGATCAAT 59.061 45.455 0.00 0.00 0.00 2.57
153 154 3.375299 GCCGTCAGTTAGCAAGATCAATT 59.625 43.478 0.00 0.00 0.00 2.32
154 155 4.142600 GCCGTCAGTTAGCAAGATCAATTT 60.143 41.667 0.00 0.00 0.00 1.82
155 156 5.563842 CCGTCAGTTAGCAAGATCAATTTC 58.436 41.667 0.00 0.00 0.00 2.17
156 157 5.122239 CCGTCAGTTAGCAAGATCAATTTCA 59.878 40.000 0.00 0.00 0.00 2.69
157 158 6.183360 CCGTCAGTTAGCAAGATCAATTTCAT 60.183 38.462 0.00 0.00 0.00 2.57
158 159 7.246311 CGTCAGTTAGCAAGATCAATTTCATT 58.754 34.615 0.00 0.00 0.00 2.57
159 160 7.217636 CGTCAGTTAGCAAGATCAATTTCATTG 59.782 37.037 0.00 0.00 41.57 2.82
160 161 8.025445 GTCAGTTAGCAAGATCAATTTCATTGT 58.975 33.333 0.00 0.00 41.02 2.71
161 162 8.579006 TCAGTTAGCAAGATCAATTTCATTGTT 58.421 29.630 0.00 0.00 41.02 2.83
162 163 8.644619 CAGTTAGCAAGATCAATTTCATTGTTG 58.355 33.333 0.00 0.00 41.02 3.33
167 168 9.280174 AGCAAGATCAATTTCATTGTTGAATTT 57.720 25.926 0.00 0.00 41.38 1.82
174 175 9.545105 TCAATTTCATTGTTGAATTTAGTGCTT 57.455 25.926 0.00 0.00 41.38 3.91
256 259 4.320608 ACAAAGCTTGTGGTTGGTTATG 57.679 40.909 0.00 0.00 43.48 1.90
257 260 3.059166 CAAAGCTTGTGGTTGGTTATGC 58.941 45.455 0.00 0.00 33.79 3.14
258 261 2.292828 AGCTTGTGGTTGGTTATGCT 57.707 45.000 0.00 0.00 0.00 3.79
260 263 2.558359 AGCTTGTGGTTGGTTATGCTTC 59.442 45.455 0.00 0.00 0.00 3.86
261 264 2.295909 GCTTGTGGTTGGTTATGCTTCA 59.704 45.455 0.00 0.00 0.00 3.02
262 265 3.243704 GCTTGTGGTTGGTTATGCTTCAA 60.244 43.478 0.00 0.00 0.00 2.69
263 266 4.298332 CTTGTGGTTGGTTATGCTTCAAC 58.702 43.478 0.00 0.00 39.77 3.18
267 276 3.820467 TGGTTGGTTATGCTTCAACTCAG 59.180 43.478 0.00 0.00 40.20 3.35
276 285 1.135460 GCTTCAACTCAGATTGCAGCC 60.135 52.381 0.00 0.00 41.31 4.85
277 286 1.129998 CTTCAACTCAGATTGCAGCCG 59.870 52.381 0.00 0.00 0.00 5.52
296 305 2.475466 CGATGGTGGCATGGTGCTC 61.475 63.158 1.64 0.00 44.28 4.26
297 306 1.378911 GATGGTGGCATGGTGCTCA 60.379 57.895 1.64 0.00 44.28 4.26
300 309 1.902918 GGTGGCATGGTGCTCACAA 60.903 57.895 18.36 0.00 44.28 3.33
301 310 1.252904 GGTGGCATGGTGCTCACAAT 61.253 55.000 18.36 0.00 44.28 2.71
336 345 0.393537 GCAGCAACCACCATCTAGCT 60.394 55.000 0.00 0.00 0.00 3.32
337 346 1.952367 GCAGCAACCACCATCTAGCTT 60.952 52.381 0.00 0.00 0.00 3.74
343 352 1.556911 ACCACCATCTAGCTTGTCCAG 59.443 52.381 0.00 0.00 0.00 3.86
346 355 2.499289 CACCATCTAGCTTGTCCAGTCT 59.501 50.000 0.00 0.00 0.00 3.24
349 358 3.443037 CATCTAGCTTGTCCAGTCTTCG 58.557 50.000 0.00 0.00 0.00 3.79
353 362 3.305398 AGCTTGTCCAGTCTTCGTAAG 57.695 47.619 0.00 0.00 0.00 2.34
355 364 1.986378 CTTGTCCAGTCTTCGTAAGCG 59.014 52.381 0.00 0.00 39.92 4.68
360 369 0.109272 CAGTCTTCGTAAGCGCAGGA 60.109 55.000 11.47 0.00 38.14 3.86
362 371 1.077089 GTCTTCGTAAGCGCAGGACC 61.077 60.000 11.47 0.00 38.14 4.46
406 423 3.869272 CGTTGAGCTGGCGCATCC 61.869 66.667 10.83 0.00 39.10 3.51
407 424 2.747460 GTTGAGCTGGCGCATCCA 60.747 61.111 10.83 0.00 44.18 3.41
439 456 2.045926 AAGCGCCATGACCAGGTC 60.046 61.111 13.35 13.35 0.00 3.85
470 487 0.038599 TCTAGCACCACGTACTCCCA 59.961 55.000 0.00 0.00 0.00 4.37
500 517 1.367840 GGACTCGCAACAGTGTCCT 59.632 57.895 0.00 0.00 45.95 3.85
528 545 0.612174 CCTCGTCCTGGGAGAGAACA 60.612 60.000 17.01 0.00 34.13 3.18
532 549 1.228894 TCCTGGGAGAGAACACGCT 60.229 57.895 0.00 0.00 0.00 5.07
536 553 1.216710 GGGAGAGAACACGCTCCTG 59.783 63.158 16.63 0.00 45.48 3.86
595 612 1.557269 CCAGCACTAGCCTCCCACTT 61.557 60.000 0.00 0.00 43.56 3.16
596 613 0.326264 CAGCACTAGCCTCCCACTTT 59.674 55.000 0.00 0.00 43.56 2.66
602 619 0.178873 TAGCCTCCCACTTTCCCAGT 60.179 55.000 0.00 0.00 35.35 4.00
625 642 1.225373 TCCTTGCATTAGGCCCTGAT 58.775 50.000 0.00 0.00 43.89 2.90
628 645 2.658285 CTTGCATTAGGCCCTGATCAA 58.342 47.619 0.00 0.00 43.89 2.57
633 650 0.908910 TTAGGCCCTGATCAAGCGAA 59.091 50.000 0.00 5.61 0.00 4.70
675 693 2.519771 AGATGCAATGACATGTGGGT 57.480 45.000 1.15 0.00 0.00 4.51
684 702 1.768275 TGACATGTGGGTCAGTGAAGT 59.232 47.619 1.15 0.00 42.56 3.01
720 739 5.815233 ATTAATCACGACTGGGATCATCT 57.185 39.130 0.00 0.00 0.00 2.90
741 760 0.523966 TTTTCCTATGCGCCAAACGG 59.476 50.000 4.18 0.00 43.93 4.44
755 774 2.165845 CCAAACGGATCTAAGGTCGAGT 59.834 50.000 0.00 0.00 0.00 4.18
768 787 1.386533 GTCGAGTTAGACCGGGATCA 58.613 55.000 6.32 0.00 35.22 2.92
771 790 2.171237 TCGAGTTAGACCGGGATCAGTA 59.829 50.000 6.32 0.00 0.00 2.74
773 792 3.379372 CGAGTTAGACCGGGATCAGTAAA 59.621 47.826 6.32 0.00 0.00 2.01
800 819 5.648092 CAGGGTACAAACTTCAGGGATTTAG 59.352 44.000 0.00 0.00 0.00 1.85
802 821 5.880887 GGGTACAAACTTCAGGGATTTAGAG 59.119 44.000 0.00 0.00 0.00 2.43
805 824 5.953571 ACAAACTTCAGGGATTTAGAGGTT 58.046 37.500 0.00 0.00 33.72 3.50
817 836 6.321435 GGGATTTAGAGGTTAGGGTTCATTTG 59.679 42.308 0.00 0.00 0.00 2.32
818 837 6.183360 GGATTTAGAGGTTAGGGTTCATTTGC 60.183 42.308 0.00 0.00 0.00 3.68
819 838 3.806949 AGAGGTTAGGGTTCATTTGCA 57.193 42.857 0.00 0.00 0.00 4.08
822 841 2.556622 AGGTTAGGGTTCATTTGCAACG 59.443 45.455 0.00 0.00 0.00 4.10
830 849 3.424962 GGTTCATTTGCAACGAGCTCTAC 60.425 47.826 12.85 0.00 45.94 2.59
831 850 3.038788 TCATTTGCAACGAGCTCTACA 57.961 42.857 12.85 1.40 45.94 2.74
894 915 2.329539 ATCCATGCCACCTACCGCAG 62.330 60.000 0.00 0.00 38.64 5.18
918 939 4.142600 GCTGCACGTCCTTTTCATCTTTAT 60.143 41.667 0.00 0.00 0.00 1.40
964 985 1.208358 CAGACCAACGCAGCACATG 59.792 57.895 0.00 0.00 0.00 3.21
1248 1275 9.529325 TTCTACGGTTAGTTCATCTTGATATTG 57.471 33.333 0.00 0.00 0.00 1.90
1249 1276 6.604735 ACGGTTAGTTCATCTTGATATTGC 57.395 37.500 0.00 0.00 0.00 3.56
1251 1278 6.258727 ACGGTTAGTTCATCTTGATATTGCTG 59.741 38.462 0.00 0.00 0.00 4.41
1253 1280 7.201644 CGGTTAGTTCATCTTGATATTGCTGTT 60.202 37.037 0.00 0.00 0.00 3.16
1255 1282 9.282247 GTTAGTTCATCTTGATATTGCTGTTTG 57.718 33.333 0.00 0.00 0.00 2.93
1273 1312 2.728690 TGATTGTGGAATGTGCAAGC 57.271 45.000 0.00 0.00 0.00 4.01
1274 1313 2.241160 TGATTGTGGAATGTGCAAGCT 58.759 42.857 0.00 0.00 30.85 3.74
1276 1315 3.191162 TGATTGTGGAATGTGCAAGCTAC 59.809 43.478 0.00 0.00 30.85 3.58
1281 1320 2.945008 TGGAATGTGCAAGCTACTATGC 59.055 45.455 1.00 1.00 42.86 3.14
1287 1326 0.652592 GCAAGCTACTATGCGTGTGG 59.347 55.000 0.00 0.00 42.72 4.17
1292 1331 2.546778 GCTACTATGCGTGTGGCTTAA 58.453 47.619 8.76 0.00 44.05 1.85
1307 1346 5.705441 TGTGGCTTAATATATTGCTACTGGC 59.295 40.000 18.69 10.79 37.70 4.85
1315 1354 6.668541 ATATATTGCTACTGGCGCTTTATG 57.331 37.500 7.64 0.00 45.43 1.90
1432 1481 7.781324 AGGAAATTTGTGAAGTGGAATGTAT 57.219 32.000 0.00 0.00 0.00 2.29
1449 1498 2.186076 GTATCCGTGAACTGCTCTTCG 58.814 52.381 0.00 0.00 0.00 3.79
1494 1543 9.962759 GATATGAATCAATTGCAAACTGTTTTC 57.037 29.630 1.71 11.75 31.93 2.29
1548 1730 2.951642 CCAACCCATATCACCATGTGTC 59.048 50.000 0.00 0.00 34.79 3.67
1551 1733 2.580322 ACCCATATCACCATGTGTCCAA 59.420 45.455 0.00 0.00 34.79 3.53
1653 1847 3.567397 AGTCGGTGAAGCTGGATACTAT 58.433 45.455 0.00 0.00 37.61 2.12
1692 1886 4.062293 TCTTCAATGGACAACCTTACACG 58.938 43.478 0.00 0.00 37.04 4.49
1815 2010 4.657436 ACCCACTCTGATCGATCTTTAC 57.343 45.455 25.02 0.30 0.00 2.01
1920 2115 2.014128 CTATTGTTGGGGCGGTTAGTG 58.986 52.381 0.00 0.00 0.00 2.74
1991 2186 5.863935 GCTTGGAATACAAAATGTTGGAGAC 59.136 40.000 0.00 0.00 38.91 3.36
2153 2348 0.325933 CCATCCTTCAGCAGTCACCA 59.674 55.000 0.00 0.00 0.00 4.17
2199 2395 8.621286 ACTTTTGTTTATCTTGTGGTACTCTTG 58.379 33.333 0.00 0.00 0.00 3.02
2221 2417 6.795098 TGTTGGTGAACTATACATGTGTTC 57.205 37.500 16.66 16.66 40.09 3.18
2341 2537 4.737352 GCTTGTTGAGACCTTGCATCAAAA 60.737 41.667 1.38 0.00 34.91 2.44
2351 2547 3.991773 CCTTGCATCAAAACAATCAGGTG 59.008 43.478 0.00 0.00 0.00 4.00
2354 2550 3.248266 GCATCAAAACAATCAGGTGAGC 58.752 45.455 0.00 0.00 0.00 4.26
2358 2554 3.250762 TCAAAACAATCAGGTGAGCTTCG 59.749 43.478 0.00 0.00 0.00 3.79
2374 2570 2.098117 GCTTCGGGTGATTTCATTCCAG 59.902 50.000 4.55 0.00 0.00 3.86
2379 2575 4.163268 TCGGGTGATTTCATTCCAGACATA 59.837 41.667 4.55 0.00 0.00 2.29
2421 2620 7.994425 TGATCTTTCTAAATGGCTTGTTACA 57.006 32.000 0.00 0.00 0.00 2.41
2423 2622 6.569179 TCTTTCTAAATGGCTTGTTACACC 57.431 37.500 0.00 0.00 0.00 4.16
2426 2625 4.391155 TCTAAATGGCTTGTTACACCGTT 58.609 39.130 0.00 0.00 34.11 4.44
2429 2628 2.039818 TGGCTTGTTACACCGTTCAA 57.960 45.000 0.00 0.00 0.00 2.69
2430 2629 2.366533 TGGCTTGTTACACCGTTCAAA 58.633 42.857 0.00 0.00 0.00 2.69
2431 2630 2.753452 TGGCTTGTTACACCGTTCAAAA 59.247 40.909 0.00 0.00 0.00 2.44
2452 2651 2.415697 AAATGGCTTGTTACACGTGC 57.584 45.000 17.22 0.00 0.00 5.34
2453 2652 1.313772 AATGGCTTGTTACACGTGCA 58.686 45.000 17.22 0.00 0.00 4.57
2454 2653 1.533625 ATGGCTTGTTACACGTGCAT 58.466 45.000 17.22 5.31 0.00 3.96
2455 2654 0.590682 TGGCTTGTTACACGTGCATG 59.409 50.000 17.22 3.82 0.00 4.06
2456 2655 0.109781 GGCTTGTTACACGTGCATGG 60.110 55.000 17.22 2.50 0.00 3.66
2457 2656 0.871722 GCTTGTTACACGTGCATGGA 59.128 50.000 17.22 0.00 0.00 3.41
2458 2657 1.399727 GCTTGTTACACGTGCATGGAC 60.400 52.381 17.22 7.39 0.00 4.02
2464 2663 1.508632 ACACGTGCATGGACTGTAAC 58.491 50.000 17.22 0.00 0.00 2.50
2518 2718 5.873179 TCAGAATAACCCAAACTTAAGCG 57.127 39.130 1.29 0.00 0.00 4.68
2587 2787 4.713814 AGTGAGAGCCTCATATGACTTTCA 59.286 41.667 10.72 10.72 42.73 2.69
2666 2866 4.263727 TGCAGATACAATGTTACCAACCCT 60.264 41.667 0.00 0.00 0.00 4.34
2672 2872 1.541379 ATGTTACCAACCCTTTCGCC 58.459 50.000 0.00 0.00 0.00 5.54
2782 3017 8.658609 CCTTGCAATTTGTTATGTCCAAATAAG 58.341 33.333 0.00 0.00 40.62 1.73
2807 3042 8.200792 AGTAAAATTTTCTTGCATTGGTGTGTA 58.799 29.630 6.72 0.00 0.00 2.90
2808 3043 7.856145 AAAATTTTCTTGCATTGGTGTGTAA 57.144 28.000 0.00 0.00 0.00 2.41
2809 3044 7.856145 AAATTTTCTTGCATTGGTGTGTAAA 57.144 28.000 0.00 0.00 0.00 2.01
2810 3045 8.449251 AAATTTTCTTGCATTGGTGTGTAAAT 57.551 26.923 0.00 0.00 0.00 1.40
2816 3051 6.926272 TCTTGCATTGGTGTGTAAATTAAACC 59.074 34.615 0.00 0.00 0.00 3.27
2818 3053 6.219473 TGCATTGGTGTGTAAATTAAACCTG 58.781 36.000 0.00 0.00 0.00 4.00
2826 3061 8.032451 GGTGTGTAAATTAAACCTGCATAATGT 58.968 33.333 0.00 0.00 0.00 2.71
2853 3088 4.136796 TGCATGCAGATAATCTGGTTACC 58.863 43.478 18.46 0.00 44.43 2.85
2859 3094 5.593909 TGCAGATAATCTGGTTACCATTTGG 59.406 40.000 3.88 0.00 44.43 3.28
2887 3127 3.503363 TCACCATTGCAATCTCTTCACAC 59.497 43.478 9.53 0.00 0.00 3.82
2895 3135 3.681897 GCAATCTCTTCACACTGGTACTG 59.318 47.826 0.00 0.00 0.00 2.74
2957 3197 2.223112 GCTATGTCTTCAACCATGTGCG 60.223 50.000 0.00 0.00 0.00 5.34
2958 3198 2.183478 ATGTCTTCAACCATGTGCGA 57.817 45.000 0.00 0.00 0.00 5.10
2959 3199 1.960417 TGTCTTCAACCATGTGCGAA 58.040 45.000 0.00 0.00 0.00 4.70
2960 3200 2.293170 TGTCTTCAACCATGTGCGAAA 58.707 42.857 0.00 0.00 0.00 3.46
2961 3201 2.884012 TGTCTTCAACCATGTGCGAAAT 59.116 40.909 0.00 0.00 0.00 2.17
2966 3206 6.687105 GTCTTCAACCATGTGCGAAATAATAC 59.313 38.462 0.00 0.00 0.00 1.89
3093 3336 5.751670 AGGAACTACACACTTGCAAAGCAG 61.752 45.833 0.00 0.00 44.13 4.24
3099 3342 2.732016 CTTGCAAAGCAGCAGGCA 59.268 55.556 0.00 0.00 46.54 4.75
3100 3343 1.068417 CTTGCAAAGCAGCAGGCAA 59.932 52.632 15.02 15.02 46.54 4.52
3101 3344 0.531090 CTTGCAAAGCAGCAGGCAAA 60.531 50.000 16.14 4.62 46.54 3.68
3121 4574 2.254546 TGCACATTGTTTCTCTCGGT 57.745 45.000 0.00 0.00 0.00 4.69
3130 4583 1.313812 TTTCTCTCGGTCTCCTCGCC 61.314 60.000 0.00 0.00 0.00 5.54
3157 4610 1.936436 TACACTAACGCCGCCATCGT 61.936 55.000 0.00 0.00 42.54 3.73
3161 4614 2.884087 CTAACGCCGCCATCGTGAGT 62.884 60.000 0.00 0.00 40.36 3.41
3189 4642 5.539048 TGCAAAGGAACTCTACTGTAACTC 58.461 41.667 0.00 0.00 38.49 3.01
3218 4671 8.640651 TGTGTTATGTGTAGGTGTTAACTCTTA 58.359 33.333 7.22 1.20 0.00 2.10
3232 4685 9.095065 GTGTTAACTCTTAATCATATTCCGTGT 57.905 33.333 7.22 0.00 0.00 4.49
3246 4699 5.616488 ATTCCGTGTATACAACCAAACAC 57.384 39.130 7.25 0.00 39.04 3.32
3248 4701 2.158058 CCGTGTATACAACCAAACACCG 59.842 50.000 7.25 3.56 39.20 4.94
3261 4714 0.179105 AACACCGTGTAGTTGCGTGA 60.179 50.000 4.17 0.00 0.00 4.35
3276 4729 2.036604 TGCGTGAGTGGAGACAATACAA 59.963 45.455 0.00 0.00 46.06 2.41
3301 4754 1.673033 CCAAACAACGTGCCAAAACCA 60.673 47.619 0.00 0.00 0.00 3.67
3313 4768 2.187100 CCAAAACCACCCCTAATGCAT 58.813 47.619 0.00 0.00 0.00 3.96
3319 4774 3.898482 ACCACCCCTAATGCATAAAGTC 58.102 45.455 0.00 0.00 0.00 3.01
3326 4781 5.645497 CCCCTAATGCATAAAGTCTAGATGC 59.355 44.000 0.00 8.09 45.02 3.91
3351 4806 3.799574 GCAACCAAACAATGTGCAGATGA 60.800 43.478 0.00 0.00 32.71 2.92
3354 4809 3.575256 ACCAAACAATGTGCAGATGATGT 59.425 39.130 0.00 0.00 0.00 3.06
3356 4811 4.992319 CCAAACAATGTGCAGATGATGTTT 59.008 37.500 16.72 16.72 40.49 2.83
3377 4845 1.703411 TTTCTGCCTGTTTTCCCTGG 58.297 50.000 0.00 0.00 0.00 4.45
3379 4847 1.607467 CTGCCTGTTTTCCCTGGGG 60.607 63.158 14.00 2.42 0.00 4.96
3381 4849 1.068943 TGCCTGTTTTCCCTGGGGTA 61.069 55.000 14.00 0.00 36.47 3.69
3392 4860 2.108075 TCCCTGGGGTATGTATGCAATG 59.892 50.000 14.00 0.00 36.47 2.82
3395 4863 2.555325 CTGGGGTATGTATGCAATGCAG 59.445 50.000 14.98 0.00 43.77 4.41
3397 4865 1.270550 GGGTATGTATGCAATGCAGGC 59.729 52.381 14.98 9.37 43.77 4.85
3404 4872 3.196039 TGTATGCAATGCAGGCAAATTCT 59.804 39.130 18.29 5.81 45.60 2.40
3407 4875 2.235155 TGCAATGCAGGCAAATTCTCAT 59.765 40.909 12.89 0.00 38.54 2.90
3426 4894 3.430556 TCATATGACAACCAAACACGTCG 59.569 43.478 0.00 0.00 0.00 5.12
3428 4896 2.290531 TGACAACCAAACACGTCGTA 57.709 45.000 0.00 0.00 0.00 3.43
3429 4897 2.195096 TGACAACCAAACACGTCGTAG 58.805 47.619 0.00 0.00 0.00 3.51
3430 4898 2.159268 TGACAACCAAACACGTCGTAGA 60.159 45.455 0.00 0.00 0.00 2.59
3454 4922 2.236893 TGCTCATCTGGTTGCACATAGA 59.763 45.455 0.00 0.00 0.00 1.98
3478 4946 0.322726 TGATGGCCCATGTGTGACTG 60.323 55.000 0.00 0.00 0.00 3.51
3479 4947 0.322816 GATGGCCCATGTGTGACTGT 60.323 55.000 0.00 0.00 0.00 3.55
3480 4948 0.991146 ATGGCCCATGTGTGACTGTA 59.009 50.000 0.00 0.00 0.00 2.74
3481 4949 0.036164 TGGCCCATGTGTGACTGTAC 59.964 55.000 0.00 0.00 0.00 2.90
3482 4950 0.324943 GGCCCATGTGTGACTGTACT 59.675 55.000 0.00 0.00 0.00 2.73
3483 4951 1.442769 GCCCATGTGTGACTGTACTG 58.557 55.000 0.00 0.00 0.00 2.74
3484 4952 1.442769 CCCATGTGTGACTGTACTGC 58.557 55.000 0.00 0.00 0.00 4.40
3521 5001 5.277345 CGATCTTCGACAAAAAGACCAAACT 60.277 40.000 0.00 0.00 43.74 2.66
3547 5027 3.040477 CCAAATGGTTAGGGCATTCCAT 58.960 45.455 3.40 3.40 41.68 3.41
3549 5029 2.276732 ATGGTTAGGGCATTCCATCG 57.723 50.000 3.40 0.00 36.09 3.84
3563 5043 0.525761 CCATCGCGGTTCACCAAAAT 59.474 50.000 6.13 0.00 35.14 1.82
3569 5049 2.722116 CGCGGTTCACCAAAATAAACAC 59.278 45.455 0.00 0.00 35.14 3.32
3579 5059 7.782049 TCACCAAAATAAACACACCAAATGTA 58.218 30.769 0.00 0.00 40.64 2.29
3591 5071 3.370978 CACCAAATGTACGTGGAGATGTC 59.629 47.826 14.96 0.00 38.36 3.06
3608 5088 0.737715 GTCCGGATGTGTCTGCAGAC 60.738 60.000 35.04 35.04 44.97 3.51
3625 5105 3.528370 CAGCGGTAGGGGAGACGG 61.528 72.222 0.00 0.00 0.00 4.79
3631 5111 1.114119 GGTAGGGGAGACGGTCATCC 61.114 65.000 11.27 13.25 34.64 3.51
3632 5112 0.396695 GTAGGGGAGACGGTCATCCA 60.397 60.000 20.65 5.51 37.33 3.41
3634 5114 0.978146 AGGGGAGACGGTCATCCAAG 60.978 60.000 20.65 0.00 37.33 3.61
3651 5131 0.104671 AAGCGCATGCACCAAAAGTT 59.895 45.000 19.57 0.00 46.23 2.66
3652 5132 0.318955 AGCGCATGCACCAAAAGTTC 60.319 50.000 19.57 0.00 46.23 3.01
3654 5134 1.003262 CGCATGCACCAAAAGTTCGG 61.003 55.000 19.57 0.00 0.00 4.30
3666 5146 4.022329 CCAAAAGTTCGGGCTAGTTCAAAT 60.022 41.667 0.00 0.00 0.00 2.32
3667 5147 5.154222 CAAAAGTTCGGGCTAGTTCAAATC 58.846 41.667 0.00 0.00 0.00 2.17
3668 5148 2.618053 AGTTCGGGCTAGTTCAAATCG 58.382 47.619 0.00 0.00 0.00 3.34
3674 5154 3.242413 CGGGCTAGTTCAAATCGACAATG 60.242 47.826 0.00 0.00 0.00 2.82
3704 5185 7.335627 AGACGGATGGAATTCATGTAAACTAA 58.664 34.615 7.93 0.00 35.97 2.24
3708 5189 7.201574 CGGATGGAATTCATGTAAACTAAACGA 60.202 37.037 7.93 0.00 35.97 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.413765 CGACTAAGGGGAGCGCTC 59.586 66.667 29.38 29.38 0.00 5.03
3 4 3.148279 CCGACTAAGGGGAGCGCT 61.148 66.667 11.27 11.27 0.00 5.92
4 5 3.140225 CTCCGACTAAGGGGAGCGC 62.140 68.421 0.00 0.00 43.03 5.92
5 6 2.491022 CCTCCGACTAAGGGGAGCG 61.491 68.421 1.54 0.00 46.87 5.03
6 7 2.798364 GCCTCCGACTAAGGGGAGC 61.798 68.421 1.54 0.00 46.87 4.70
7 8 2.491022 CGCCTCCGACTAAGGGGAG 61.491 68.421 0.21 0.07 46.85 4.30
8 9 2.441532 CGCCTCCGACTAAGGGGA 60.442 66.667 0.21 0.00 46.85 4.81
9 10 1.610554 TTTCGCCTCCGACTAAGGGG 61.611 60.000 0.10 0.10 44.30 4.79
10 11 0.179108 CTTTCGCCTCCGACTAAGGG 60.179 60.000 0.00 0.00 44.30 3.95
11 12 0.806492 GCTTTCGCCTCCGACTAAGG 60.806 60.000 0.00 0.00 44.30 2.69
12 13 0.108804 TGCTTTCGCCTCCGACTAAG 60.109 55.000 0.00 0.00 44.30 2.18
13 14 0.389426 GTGCTTTCGCCTCCGACTAA 60.389 55.000 0.00 0.00 44.30 2.24
14 15 1.214589 GTGCTTTCGCCTCCGACTA 59.785 57.895 0.00 0.00 44.30 2.59
15 16 2.048127 GTGCTTTCGCCTCCGACT 60.048 61.111 0.00 0.00 44.30 4.18
16 17 1.741770 ATGTGCTTTCGCCTCCGAC 60.742 57.895 0.00 0.00 44.30 4.79
17 18 1.741401 CATGTGCTTTCGCCTCCGA 60.741 57.895 0.00 0.00 42.66 4.55
18 19 1.091771 ATCATGTGCTTTCGCCTCCG 61.092 55.000 0.00 0.00 34.43 4.63
19 20 0.379669 CATCATGTGCTTTCGCCTCC 59.620 55.000 0.00 0.00 34.43 4.30
20 21 0.379669 CCATCATGTGCTTTCGCCTC 59.620 55.000 0.00 0.00 34.43 4.70
21 22 1.660560 GCCATCATGTGCTTTCGCCT 61.661 55.000 0.00 0.00 34.43 5.52
22 23 1.226773 GCCATCATGTGCTTTCGCC 60.227 57.895 0.00 0.00 34.43 5.54
23 24 0.524816 CTGCCATCATGTGCTTTCGC 60.525 55.000 0.00 0.00 0.00 4.70
24 25 1.063616 CTCTGCCATCATGTGCTTTCG 59.936 52.381 0.00 0.00 0.00 3.46
25 26 1.404391 CCTCTGCCATCATGTGCTTTC 59.596 52.381 0.00 0.00 0.00 2.62
26 27 1.005097 TCCTCTGCCATCATGTGCTTT 59.995 47.619 0.00 0.00 0.00 3.51
27 28 0.622136 TCCTCTGCCATCATGTGCTT 59.378 50.000 0.00 0.00 0.00 3.91
28 29 0.622136 TTCCTCTGCCATCATGTGCT 59.378 50.000 0.00 0.00 0.00 4.40
29 30 1.022735 CTTCCTCTGCCATCATGTGC 58.977 55.000 0.00 0.00 0.00 4.57
30 31 1.022735 GCTTCCTCTGCCATCATGTG 58.977 55.000 0.00 0.00 0.00 3.21
31 32 0.463295 CGCTTCCTCTGCCATCATGT 60.463 55.000 0.00 0.00 0.00 3.21
32 33 1.783031 GCGCTTCCTCTGCCATCATG 61.783 60.000 0.00 0.00 0.00 3.07
33 34 1.525535 GCGCTTCCTCTGCCATCAT 60.526 57.895 0.00 0.00 0.00 2.45
34 35 2.124983 GCGCTTCCTCTGCCATCA 60.125 61.111 0.00 0.00 0.00 3.07
35 36 3.267860 CGCGCTTCCTCTGCCATC 61.268 66.667 5.56 0.00 0.00 3.51
36 37 4.845580 CCGCGCTTCCTCTGCCAT 62.846 66.667 5.56 0.00 0.00 4.40
40 41 4.082523 TTCCCCGCGCTTCCTCTG 62.083 66.667 5.56 0.00 0.00 3.35
41 42 3.775654 CTTCCCCGCGCTTCCTCT 61.776 66.667 5.56 0.00 0.00 3.69
42 43 4.840005 CCTTCCCCGCGCTTCCTC 62.840 72.222 5.56 0.00 0.00 3.71
44 45 4.840005 CTCCTTCCCCGCGCTTCC 62.840 72.222 5.56 0.00 0.00 3.46
50 51 4.475135 GTCCAGCTCCTTCCCCGC 62.475 72.222 0.00 0.00 0.00 6.13
51 52 4.148825 CGTCCAGCTCCTTCCCCG 62.149 72.222 0.00 0.00 0.00 5.73
52 53 3.787001 CCGTCCAGCTCCTTCCCC 61.787 72.222 0.00 0.00 0.00 4.81
53 54 2.291043 TTCCGTCCAGCTCCTTCCC 61.291 63.158 0.00 0.00 0.00 3.97
54 55 1.079057 GTTCCGTCCAGCTCCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
55 56 0.034896 TTGTTCCGTCCAGCTCCTTC 59.965 55.000 0.00 0.00 0.00 3.46
56 57 0.472471 TTTGTTCCGTCCAGCTCCTT 59.528 50.000 0.00 0.00 0.00 3.36
57 58 0.035458 CTTTGTTCCGTCCAGCTCCT 59.965 55.000 0.00 0.00 0.00 3.69
58 59 0.250338 ACTTTGTTCCGTCCAGCTCC 60.250 55.000 0.00 0.00 0.00 4.70
59 60 2.288886 ACTACTTTGTTCCGTCCAGCTC 60.289 50.000 0.00 0.00 0.00 4.09
60 61 1.692519 ACTACTTTGTTCCGTCCAGCT 59.307 47.619 0.00 0.00 0.00 4.24
61 62 1.798813 CACTACTTTGTTCCGTCCAGC 59.201 52.381 0.00 0.00 0.00 4.85
62 63 3.380479 TCACTACTTTGTTCCGTCCAG 57.620 47.619 0.00 0.00 0.00 3.86
63 64 3.823281 TTCACTACTTTGTTCCGTCCA 57.177 42.857 0.00 0.00 0.00 4.02
64 65 3.435671 CCATTCACTACTTTGTTCCGTCC 59.564 47.826 0.00 0.00 0.00 4.79
65 66 4.312443 TCCATTCACTACTTTGTTCCGTC 58.688 43.478 0.00 0.00 0.00 4.79
66 67 4.202326 ACTCCATTCACTACTTTGTTCCGT 60.202 41.667 0.00 0.00 0.00 4.69
67 68 4.315803 ACTCCATTCACTACTTTGTTCCG 58.684 43.478 0.00 0.00 0.00 4.30
68 69 4.695928 GGACTCCATTCACTACTTTGTTCC 59.304 45.833 0.00 0.00 0.00 3.62
69 70 4.389077 CGGACTCCATTCACTACTTTGTTC 59.611 45.833 0.00 0.00 0.00 3.18
70 71 4.315803 CGGACTCCATTCACTACTTTGTT 58.684 43.478 0.00 0.00 0.00 2.83
71 72 3.306780 CCGGACTCCATTCACTACTTTGT 60.307 47.826 0.00 0.00 0.00 2.83
72 73 3.262420 CCGGACTCCATTCACTACTTTG 58.738 50.000 0.00 0.00 0.00 2.77
73 74 2.236395 CCCGGACTCCATTCACTACTTT 59.764 50.000 0.73 0.00 0.00 2.66
74 75 1.831736 CCCGGACTCCATTCACTACTT 59.168 52.381 0.73 0.00 0.00 2.24
75 76 1.006758 TCCCGGACTCCATTCACTACT 59.993 52.381 0.73 0.00 0.00 2.57
76 77 1.481871 TCCCGGACTCCATTCACTAC 58.518 55.000 0.73 0.00 0.00 2.73
77 78 2.108168 CTTCCCGGACTCCATTCACTA 58.892 52.381 0.73 0.00 0.00 2.74
78 79 0.905357 CTTCCCGGACTCCATTCACT 59.095 55.000 0.73 0.00 0.00 3.41
79 80 0.613777 ACTTCCCGGACTCCATTCAC 59.386 55.000 0.73 0.00 0.00 3.18
80 81 1.829222 GTACTTCCCGGACTCCATTCA 59.171 52.381 0.73 0.00 0.00 2.57
81 82 1.829222 TGTACTTCCCGGACTCCATTC 59.171 52.381 0.73 0.00 0.00 2.67
82 83 1.946984 TGTACTTCCCGGACTCCATT 58.053 50.000 0.73 0.00 0.00 3.16
83 84 1.762957 CATGTACTTCCCGGACTCCAT 59.237 52.381 0.73 0.00 0.00 3.41
84 85 1.191535 CATGTACTTCCCGGACTCCA 58.808 55.000 0.73 0.00 0.00 3.86
85 86 0.179081 GCATGTACTTCCCGGACTCC 60.179 60.000 0.73 0.00 0.00 3.85
86 87 0.824759 AGCATGTACTTCCCGGACTC 59.175 55.000 0.73 0.00 0.00 3.36
87 88 0.824759 GAGCATGTACTTCCCGGACT 59.175 55.000 0.73 0.00 0.00 3.85
88 89 0.535335 TGAGCATGTACTTCCCGGAC 59.465 55.000 0.73 0.00 0.00 4.79
89 90 1.207089 CTTGAGCATGTACTTCCCGGA 59.793 52.381 0.73 0.00 0.00 5.14
90 91 1.207089 TCTTGAGCATGTACTTCCCGG 59.793 52.381 0.00 0.00 0.00 5.73
91 92 2.544685 CTCTTGAGCATGTACTTCCCG 58.455 52.381 0.00 0.00 0.00 5.14
92 93 2.284190 GCTCTTGAGCATGTACTTCCC 58.716 52.381 16.71 0.00 34.41 3.97
93 94 2.935201 CTGCTCTTGAGCATGTACTTCC 59.065 50.000 23.20 0.00 44.47 3.46
94 95 2.935201 CCTGCTCTTGAGCATGTACTTC 59.065 50.000 23.20 0.00 44.47 3.01
95 96 2.938756 GCCTGCTCTTGAGCATGTACTT 60.939 50.000 23.20 0.00 44.47 2.24
96 97 1.406614 GCCTGCTCTTGAGCATGTACT 60.407 52.381 23.20 0.00 44.47 2.73
97 98 1.012841 GCCTGCTCTTGAGCATGTAC 58.987 55.000 23.20 10.93 44.47 2.90
98 99 0.107508 GGCCTGCTCTTGAGCATGTA 60.108 55.000 23.20 3.32 44.47 2.29
99 100 1.378250 GGCCTGCTCTTGAGCATGT 60.378 57.895 23.20 0.00 44.47 3.21
100 101 0.752009 ATGGCCTGCTCTTGAGCATG 60.752 55.000 23.20 20.87 44.47 4.06
101 102 0.465824 GATGGCCTGCTCTTGAGCAT 60.466 55.000 23.20 10.13 44.47 3.79
102 103 1.077930 GATGGCCTGCTCTTGAGCA 60.078 57.895 21.90 21.90 43.22 4.26
103 104 1.096386 CAGATGGCCTGCTCTTGAGC 61.096 60.000 15.01 15.01 35.89 4.26
104 105 0.464013 CCAGATGGCCTGCTCTTGAG 60.464 60.000 3.32 0.00 41.57 3.02
105 106 1.605992 CCAGATGGCCTGCTCTTGA 59.394 57.895 3.32 0.00 41.57 3.02
106 107 1.453379 CCCAGATGGCCTGCTCTTG 60.453 63.158 3.32 0.00 41.57 3.02
107 108 1.210204 TTCCCAGATGGCCTGCTCTT 61.210 55.000 3.32 0.00 41.57 2.85
108 109 1.617536 TTCCCAGATGGCCTGCTCT 60.618 57.895 3.32 0.10 41.57 4.09
109 110 1.153005 CTTCCCAGATGGCCTGCTC 60.153 63.158 3.32 0.00 41.57 4.26
110 111 2.687610 CCTTCCCAGATGGCCTGCT 61.688 63.158 3.32 0.00 41.57 4.24
111 112 2.123982 CCTTCCCAGATGGCCTGC 60.124 66.667 3.32 0.00 41.57 4.85
112 113 2.123982 GCCTTCCCAGATGGCCTG 60.124 66.667 3.32 0.00 44.04 4.85
113 114 3.801997 CGCCTTCCCAGATGGCCT 61.802 66.667 3.32 0.00 46.09 5.19
114 115 4.883354 CCGCCTTCCCAGATGGCC 62.883 72.222 13.97 0.00 46.09 5.36
116 117 4.883354 GGCCGCCTTCCCAGATGG 62.883 72.222 0.71 0.00 0.00 3.51
123 124 3.305177 TAACTGACGGCCGCCTTCC 62.305 63.158 28.58 10.12 0.00 3.46
124 125 1.810030 CTAACTGACGGCCGCCTTC 60.810 63.158 28.58 16.81 0.00 3.46
125 126 2.264794 CTAACTGACGGCCGCCTT 59.735 61.111 28.58 13.59 0.00 4.35
126 127 4.452733 GCTAACTGACGGCCGCCT 62.453 66.667 28.58 6.48 0.00 5.52
127 128 4.752879 TGCTAACTGACGGCCGCC 62.753 66.667 28.58 17.03 0.00 6.13
128 129 2.740714 CTTGCTAACTGACGGCCGC 61.741 63.158 28.58 19.01 0.00 6.53
129 130 0.460284 ATCTTGCTAACTGACGGCCG 60.460 55.000 26.86 26.86 0.00 6.13
130 131 1.291132 GATCTTGCTAACTGACGGCC 58.709 55.000 0.00 0.00 0.00 6.13
131 132 2.010145 TGATCTTGCTAACTGACGGC 57.990 50.000 0.00 0.00 0.00 5.68
132 133 5.122239 TGAAATTGATCTTGCTAACTGACGG 59.878 40.000 0.00 0.00 0.00 4.79
133 134 6.169419 TGAAATTGATCTTGCTAACTGACG 57.831 37.500 0.00 0.00 0.00 4.35
153 154 7.169645 GCTTGAAGCACTAAATTCAACAATGAA 59.830 33.333 13.09 0.00 44.45 2.57
154 155 6.642131 GCTTGAAGCACTAAATTCAACAATGA 59.358 34.615 13.09 0.00 41.89 2.57
155 156 6.814343 GCTTGAAGCACTAAATTCAACAATG 58.186 36.000 13.09 0.00 41.89 2.82
221 224 1.067516 GCTTTGTGTTGCACCATCAGT 59.932 47.619 0.00 0.00 32.73 3.41
225 228 1.481772 ACAAGCTTTGTGTTGCACCAT 59.518 42.857 0.00 0.00 43.48 3.55
235 238 3.492482 GCATAACCAACCACAAGCTTTGT 60.492 43.478 0.00 0.00 46.75 2.83
252 255 5.556355 CTGCAATCTGAGTTGAAGCATAA 57.444 39.130 0.00 0.00 33.12 1.90
257 260 1.129998 CGGCTGCAATCTGAGTTGAAG 59.870 52.381 0.50 4.54 37.73 3.02
258 261 1.159285 CGGCTGCAATCTGAGTTGAA 58.841 50.000 0.50 0.00 0.00 2.69
260 263 1.136147 GCGGCTGCAATCTGAGTTG 59.864 57.895 14.08 0.00 42.15 3.16
261 264 2.393768 CGCGGCTGCAATCTGAGTT 61.394 57.895 19.50 0.00 42.97 3.01
262 265 2.584261 ATCGCGGCTGCAATCTGAGT 62.584 55.000 19.50 0.00 42.97 3.41
263 266 1.886313 ATCGCGGCTGCAATCTGAG 60.886 57.895 19.50 0.00 42.97 3.35
267 276 3.204827 ACCATCGCGGCTGCAATC 61.205 61.111 19.50 0.00 42.97 2.67
276 285 3.879682 CACCATGCCACCATCGCG 61.880 66.667 0.00 0.00 0.00 5.87
277 286 4.197498 GCACCATGCCACCATCGC 62.197 66.667 0.00 0.00 37.42 4.58
296 305 1.941975 TCATCGCCATGTGCTATTGTG 59.058 47.619 4.92 0.00 38.05 3.33
297 306 2.216046 CTCATCGCCATGTGCTATTGT 58.784 47.619 4.92 0.00 38.05 2.71
300 309 0.107268 TGCTCATCGCCATGTGCTAT 59.893 50.000 17.21 0.00 45.80 2.97
301 310 0.531311 CTGCTCATCGCCATGTGCTA 60.531 55.000 17.21 5.47 45.80 3.49
336 345 1.933500 GCGCTTACGAAGACTGGACAA 60.934 52.381 0.00 0.00 43.93 3.18
337 346 0.388134 GCGCTTACGAAGACTGGACA 60.388 55.000 0.00 0.00 43.93 4.02
346 355 1.080093 CAGGTCCTGCGCTTACGAA 60.080 57.895 9.73 0.00 43.93 3.85
349 358 2.125106 CCCAGGTCCTGCGCTTAC 60.125 66.667 13.99 3.69 0.00 2.34
375 392 3.649986 AACGCCTTGCACGCAGTC 61.650 61.111 5.84 0.00 41.61 3.51
381 398 2.253452 CAGCTCAACGCCTTGCAC 59.747 61.111 0.00 0.00 40.39 4.57
419 436 4.170062 CTGGTCATGGCGCTTGCG 62.170 66.667 7.64 10.90 40.46 4.85
421 438 2.360350 ACCTGGTCATGGCGCTTG 60.360 61.111 7.64 5.90 0.00 4.01
488 505 2.203337 TGCCCAGGACACTGTTGC 60.203 61.111 0.00 0.00 43.36 4.17
489 506 1.898574 GGTGCCCAGGACACTGTTG 60.899 63.158 5.79 0.00 43.36 3.33
492 509 2.348998 GAGGTGCCCAGGACACTG 59.651 66.667 5.79 0.00 44.51 3.66
500 517 4.316823 AGGACGAGGAGGTGCCCA 62.317 66.667 0.00 0.00 37.37 5.36
513 530 1.079750 GCGTGTTCTCTCCCAGGAC 60.080 63.158 0.00 0.00 0.00 3.85
516 533 1.216710 GGAGCGTGTTCTCTCCCAG 59.783 63.158 0.00 0.00 42.30 4.45
568 585 2.816958 CTAGTGCTGGCTGGCGTG 60.817 66.667 0.00 0.00 34.52 5.34
569 586 4.767255 GCTAGTGCTGGCTGGCGT 62.767 66.667 0.14 0.00 33.52 5.68
571 588 4.106925 AGGCTAGTGCTGGCTGGC 62.107 66.667 7.44 0.00 41.42 4.85
572 589 2.188994 GAGGCTAGTGCTGGCTGG 59.811 66.667 7.44 0.00 40.49 4.85
573 590 2.188994 GGAGGCTAGTGCTGGCTG 59.811 66.667 7.44 0.00 40.49 4.85
574 591 3.086600 GGGAGGCTAGTGCTGGCT 61.087 66.667 7.44 3.06 43.15 4.75
575 592 3.402681 TGGGAGGCTAGTGCTGGC 61.403 66.667 0.00 0.00 39.59 4.85
576 593 1.557269 AAGTGGGAGGCTAGTGCTGG 61.557 60.000 0.00 0.00 39.59 4.85
577 594 0.326264 AAAGTGGGAGGCTAGTGCTG 59.674 55.000 0.00 0.00 39.59 4.41
578 595 0.615850 GAAAGTGGGAGGCTAGTGCT 59.384 55.000 0.00 0.00 39.59 4.40
579 596 0.393132 GGAAAGTGGGAGGCTAGTGC 60.393 60.000 0.00 0.00 38.76 4.40
580 597 0.253327 GGGAAAGTGGGAGGCTAGTG 59.747 60.000 0.00 0.00 0.00 2.74
581 598 0.178873 TGGGAAAGTGGGAGGCTAGT 60.179 55.000 0.00 0.00 0.00 2.57
582 599 0.543749 CTGGGAAAGTGGGAGGCTAG 59.456 60.000 0.00 0.00 0.00 3.42
583 600 0.178873 ACTGGGAAAGTGGGAGGCTA 60.179 55.000 0.00 0.00 37.88 3.93
584 601 1.464198 ACTGGGAAAGTGGGAGGCT 60.464 57.895 0.00 0.00 37.88 4.58
595 612 0.911769 ATGCAAGGATCGACTGGGAA 59.088 50.000 0.00 0.00 0.00 3.97
596 613 0.911769 AATGCAAGGATCGACTGGGA 59.088 50.000 0.00 0.00 0.00 4.37
602 619 0.108585 GGGCCTAATGCAAGGATCGA 59.891 55.000 8.71 0.00 43.89 3.59
625 642 1.107114 CTCTCCCTAGCTTCGCTTGA 58.893 55.000 0.00 0.00 40.44 3.02
628 645 1.098712 CGTCTCTCCCTAGCTTCGCT 61.099 60.000 0.00 0.00 43.41 4.93
633 650 0.553819 ATCCACGTCTCTCCCTAGCT 59.446 55.000 0.00 0.00 0.00 3.32
638 655 1.825474 TCTTCAATCCACGTCTCTCCC 59.175 52.381 0.00 0.00 0.00 4.30
639 656 3.452474 CATCTTCAATCCACGTCTCTCC 58.548 50.000 0.00 0.00 0.00 3.71
641 658 2.234661 TGCATCTTCAATCCACGTCTCT 59.765 45.455 0.00 0.00 0.00 3.10
647 664 4.707030 TGTCATTGCATCTTCAATCCAC 57.293 40.909 0.00 0.00 34.68 4.02
730 749 0.742990 CCTTAGATCCGTTTGGCGCA 60.743 55.000 10.83 0.00 39.71 6.09
755 774 5.303589 CCTGTATTTACTGATCCCGGTCTAA 59.696 44.000 0.00 0.00 33.18 2.10
761 780 4.342951 TGTACCCTGTATTTACTGATCCCG 59.657 45.833 0.00 0.00 0.00 5.14
768 787 7.166167 CCTGAAGTTTGTACCCTGTATTTACT 58.834 38.462 0.00 0.00 0.00 2.24
771 790 5.073965 TCCCTGAAGTTTGTACCCTGTATTT 59.926 40.000 0.00 0.00 0.00 1.40
773 792 4.172807 TCCCTGAAGTTTGTACCCTGTAT 58.827 43.478 0.00 0.00 0.00 2.29
800 819 3.365969 CGTTGCAAATGAACCCTAACCTC 60.366 47.826 0.00 0.00 33.73 3.85
802 821 2.554893 TCGTTGCAAATGAACCCTAACC 59.445 45.455 0.00 0.00 39.27 2.85
805 824 1.810151 GCTCGTTGCAAATGAACCCTA 59.190 47.619 0.00 0.00 42.13 3.53
817 836 1.351153 GAGGTTGTAGAGCTCGTTGC 58.649 55.000 8.37 0.00 42.45 4.17
843 862 9.802039 ATTGTTGGGTGAGTAAAGTCTATTTTA 57.198 29.630 0.00 0.00 0.00 1.52
855 874 4.764823 GGATTGTTCATTGTTGGGTGAGTA 59.235 41.667 0.00 0.00 0.00 2.59
894 915 0.169009 GATGAAAAGGACGTGCAGCC 59.831 55.000 10.52 0.00 0.00 4.85
918 939 4.775058 ACCTTGCGTGCATTTGTATTTA 57.225 36.364 0.00 0.00 0.00 1.40
964 985 4.537433 AGGCTCGATGCTTCCGCC 62.537 66.667 15.70 15.70 42.39 6.13
982 1003 0.537143 ATGGTCCTGCAACAAAGCGA 60.537 50.000 0.00 0.00 37.31 4.93
1248 1275 2.733026 GCACATTCCACAATCAAACAGC 59.267 45.455 0.00 0.00 0.00 4.40
1249 1276 3.979948 TGCACATTCCACAATCAAACAG 58.020 40.909 0.00 0.00 0.00 3.16
1251 1278 3.184986 GCTTGCACATTCCACAATCAAAC 59.815 43.478 0.00 0.00 0.00 2.93
1253 1280 2.629137 AGCTTGCACATTCCACAATCAA 59.371 40.909 0.00 0.00 0.00 2.57
1255 1282 3.441572 AGTAGCTTGCACATTCCACAATC 59.558 43.478 0.00 0.00 0.00 2.67
1273 1312 8.595533 CAATATATTAAGCCACACGCATAGTAG 58.404 37.037 0.00 0.00 41.38 2.57
1274 1313 7.064134 GCAATATATTAAGCCACACGCATAGTA 59.936 37.037 0.00 0.00 41.38 1.82
1276 1315 6.092670 AGCAATATATTAAGCCACACGCATAG 59.907 38.462 0.00 0.00 41.38 2.23
1281 1320 6.128553 CCAGTAGCAATATATTAAGCCACACG 60.129 42.308 0.00 0.00 0.00 4.49
1287 1326 4.631813 AGCGCCAGTAGCAATATATTAAGC 59.368 41.667 2.29 0.00 44.04 3.09
1292 1331 6.092670 CACATAAAGCGCCAGTAGCAATATAT 59.907 38.462 2.29 0.00 44.04 0.86
1307 1346 6.682863 CGAATCCTAAAAAGACACATAAAGCG 59.317 38.462 0.00 0.00 0.00 4.68
1315 1354 4.638963 CGCTTCGAATCCTAAAAAGACAC 58.361 43.478 0.00 0.00 0.00 3.67
1432 1481 1.289066 CCGAAGAGCAGTTCACGGA 59.711 57.895 14.43 0.00 44.72 4.69
1435 1484 3.808174 ACTTTTACCGAAGAGCAGTTCAC 59.192 43.478 0.00 0.00 0.00 3.18
1494 1543 2.337583 TCGAACAGAGCCATTCTTTCG 58.662 47.619 11.59 11.59 41.91 3.46
1589 1773 2.288666 TCCATGAACGCATAAGCCTTC 58.711 47.619 0.00 0.00 36.64 3.46
1692 1886 0.040067 CTGTTCTGTTTGCGCCTTCC 60.040 55.000 4.18 0.00 0.00 3.46
1699 1893 3.319122 AGGAACCATTCTGTTCTGTTTGC 59.681 43.478 4.16 0.00 43.31 3.68
1779 1973 6.385759 TCAGAGTGGGTAGAAAAATATAGGCA 59.614 38.462 0.00 0.00 0.00 4.75
1815 2010 3.609853 TGAGCTGCTTTTACCTGTATGG 58.390 45.455 2.53 0.00 42.93 2.74
1920 2115 5.066968 TCTTTGTGTTGGTTTCAGGTTTC 57.933 39.130 0.00 0.00 0.00 2.78
1926 2121 8.006298 ACATATTTCTCTTTGTGTTGGTTTCA 57.994 30.769 0.00 0.00 0.00 2.69
2153 2348 3.194968 AGTTCACCTTTCATATCGTCGGT 59.805 43.478 0.00 0.00 0.00 4.69
2199 2395 7.435068 AAGAACACATGTATAGTTCACCAAC 57.565 36.000 22.42 3.15 43.00 3.77
2221 2417 5.181748 AGTGGCAGTTGAGCTAAGAATAAG 58.818 41.667 0.00 0.00 34.17 1.73
2341 2537 0.036010 CCCGAAGCTCACCTGATTGT 60.036 55.000 0.00 0.00 0.00 2.71
2351 2547 2.356069 GGAATGAAATCACCCGAAGCTC 59.644 50.000 0.00 0.00 0.00 4.09
2354 2550 3.375299 GTCTGGAATGAAATCACCCGAAG 59.625 47.826 0.00 0.00 0.00 3.79
2358 2554 5.242393 CCATATGTCTGGAATGAAATCACCC 59.758 44.000 1.24 0.00 38.69 4.61
2401 2600 5.048991 ACGGTGTAACAAGCCATTTAGAAAG 60.049 40.000 0.00 0.00 39.98 2.62
2408 2607 2.577700 TGAACGGTGTAACAAGCCATT 58.422 42.857 0.00 0.00 39.98 3.16
2431 2630 3.120041 GCACGTGTAACAAGCCATTTTT 58.880 40.909 18.38 0.00 35.74 1.94
2434 2633 1.313772 TGCACGTGTAACAAGCCATT 58.686 45.000 18.38 0.00 35.65 3.16
2435 2634 1.199789 CATGCACGTGTAACAAGCCAT 59.800 47.619 18.38 6.32 35.65 4.40
2436 2635 0.590682 CATGCACGTGTAACAAGCCA 59.409 50.000 18.38 3.95 35.65 4.75
2437 2636 0.109781 CCATGCACGTGTAACAAGCC 60.110 55.000 18.38 0.00 35.65 4.35
2438 2637 0.871722 TCCATGCACGTGTAACAAGC 59.128 50.000 18.38 0.47 35.74 4.01
2439 2638 2.096268 CAGTCCATGCACGTGTAACAAG 60.096 50.000 18.38 3.70 35.74 3.16
2440 2639 1.870402 CAGTCCATGCACGTGTAACAA 59.130 47.619 18.38 0.00 35.74 2.83
2441 2640 1.202592 ACAGTCCATGCACGTGTAACA 60.203 47.619 18.38 7.14 35.74 2.41
2442 2641 1.508632 ACAGTCCATGCACGTGTAAC 58.491 50.000 18.38 8.14 0.00 2.50
2443 2642 3.061322 GTTACAGTCCATGCACGTGTAA 58.939 45.455 18.38 6.47 32.53 2.41
2444 2643 2.297880 AGTTACAGTCCATGCACGTGTA 59.702 45.455 18.38 14.09 0.00 2.90
2445 2644 1.070134 AGTTACAGTCCATGCACGTGT 59.930 47.619 18.38 0.00 0.00 4.49
2446 2645 1.726791 GAGTTACAGTCCATGCACGTG 59.273 52.381 12.28 12.28 0.00 4.49
2447 2646 1.343142 TGAGTTACAGTCCATGCACGT 59.657 47.619 0.00 0.00 0.00 4.49
2448 2647 2.078849 TGAGTTACAGTCCATGCACG 57.921 50.000 0.00 0.00 0.00 5.34
2449 2648 5.156355 CAAATTGAGTTACAGTCCATGCAC 58.844 41.667 0.00 0.00 0.00 4.57
2450 2649 4.321156 GCAAATTGAGTTACAGTCCATGCA 60.321 41.667 0.00 0.00 0.00 3.96
2451 2650 4.168760 GCAAATTGAGTTACAGTCCATGC 58.831 43.478 0.00 0.00 0.00 4.06
2452 2651 5.375417 TGCAAATTGAGTTACAGTCCATG 57.625 39.130 0.00 0.00 0.00 3.66
2453 2652 6.209192 TGAATGCAAATTGAGTTACAGTCCAT 59.791 34.615 0.00 0.00 0.00 3.41
2454 2653 5.534278 TGAATGCAAATTGAGTTACAGTCCA 59.466 36.000 0.00 0.00 0.00 4.02
2455 2654 6.012658 TGAATGCAAATTGAGTTACAGTCC 57.987 37.500 0.00 0.00 0.00 3.85
2456 2655 7.307694 TCATGAATGCAAATTGAGTTACAGTC 58.692 34.615 0.00 0.00 0.00 3.51
2457 2656 7.218228 TCATGAATGCAAATTGAGTTACAGT 57.782 32.000 0.00 0.00 0.00 3.55
2458 2657 8.430063 GTTTCATGAATGCAAATTGAGTTACAG 58.570 33.333 9.40 0.00 0.00 2.74
2464 2663 7.597369 TCTTCTGTTTCATGAATGCAAATTGAG 59.403 33.333 9.40 5.77 0.00 3.02
2612 2812 4.272489 CATGGGCAACTTCTGGAAAGATA 58.728 43.478 0.00 0.00 0.00 1.98
2666 2866 3.039588 GCGGTCTTGACGGCGAAA 61.040 61.111 16.62 6.76 0.00 3.46
2672 2872 0.508641 CTTGTTCAGCGGTCTTGACG 59.491 55.000 0.00 0.00 0.00 4.35
2699 2899 0.733150 GGAACCAGCCGAGCATTAAC 59.267 55.000 0.00 0.00 0.00 2.01
2771 2971 9.823647 TGCAAGAAAATTTTACTTATTTGGACA 57.176 25.926 2.75 0.00 0.00 4.02
2782 3017 7.245419 ACACACCAATGCAAGAAAATTTTAC 57.755 32.000 2.75 0.00 0.00 2.01
2786 3021 8.449251 AATTTACACACCAATGCAAGAAAATT 57.551 26.923 0.00 0.00 0.00 1.82
2787 3022 9.553064 TTAATTTACACACCAATGCAAGAAAAT 57.447 25.926 0.00 0.00 0.00 1.82
2800 3035 8.032451 ACATTATGCAGGTTTAATTTACACACC 58.968 33.333 0.00 0.00 0.00 4.16
2801 3036 8.859156 CACATTATGCAGGTTTAATTTACACAC 58.141 33.333 0.00 0.00 0.00 3.82
2826 3061 5.812286 ACCAGATTATCTGCATGCATATCA 58.188 37.500 22.97 11.68 42.98 2.15
2830 3065 4.763793 GGTAACCAGATTATCTGCATGCAT 59.236 41.667 22.97 10.26 42.98 3.96
2831 3066 4.136796 GGTAACCAGATTATCTGCATGCA 58.863 43.478 21.29 21.29 42.98 3.96
2832 3067 4.136796 TGGTAACCAGATTATCTGCATGC 58.863 43.478 16.18 11.82 42.98 4.06
2833 3068 6.889301 AATGGTAACCAGATTATCTGCATG 57.111 37.500 16.18 6.11 42.98 4.06
2866 3101 3.504906 AGTGTGAAGAGATTGCAATGGTG 59.495 43.478 18.59 0.00 0.00 4.17
2870 3105 3.759581 ACCAGTGTGAAGAGATTGCAAT 58.240 40.909 12.83 12.83 0.00 3.56
2874 3109 4.887748 ACAGTACCAGTGTGAAGAGATTG 58.112 43.478 0.00 0.00 29.04 2.67
2887 3127 0.037326 ACGCATGGACACAGTACCAG 60.037 55.000 0.00 0.00 39.62 4.00
2895 3135 2.667318 CCGACACACGCATGGACAC 61.667 63.158 0.00 0.00 41.07 3.67
3093 3336 1.515081 AACAATGTGCATTTGCCTGC 58.485 45.000 11.11 0.00 42.62 4.85
3094 3337 3.395639 AGAAACAATGTGCATTTGCCTG 58.604 40.909 11.11 0.00 41.18 4.85
3096 3339 3.656559 AGAGAAACAATGTGCATTTGCC 58.343 40.909 11.11 3.30 41.18 4.52
3097 3340 3.362831 CGAGAGAAACAATGTGCATTTGC 59.637 43.478 11.11 0.00 42.50 3.68
3098 3341 3.916172 CCGAGAGAAACAATGTGCATTTG 59.084 43.478 9.95 9.95 0.00 2.32
3099 3342 3.569701 ACCGAGAGAAACAATGTGCATTT 59.430 39.130 0.00 0.00 0.00 2.32
3100 3343 3.149196 ACCGAGAGAAACAATGTGCATT 58.851 40.909 0.00 0.00 0.00 3.56
3101 3344 2.744202 GACCGAGAGAAACAATGTGCAT 59.256 45.455 0.00 0.00 0.00 3.96
3104 3347 2.996621 GGAGACCGAGAGAAACAATGTG 59.003 50.000 0.00 0.00 0.00 3.21
3109 4562 1.166129 CGAGGAGACCGAGAGAAACA 58.834 55.000 0.00 0.00 0.00 2.83
3130 4583 0.804933 GGCGTTAGTGTAAGCCGAGG 60.805 60.000 0.00 0.00 40.17 4.63
3144 4597 4.373116 ACTCACGATGGCGGCGTT 62.373 61.111 9.37 0.00 40.44 4.84
3157 4610 1.024271 GTTCCTTTGCAGTGCACTCA 58.976 50.000 19.58 15.15 38.71 3.41
3161 4614 2.104792 AGTAGAGTTCCTTTGCAGTGCA 59.895 45.455 15.37 15.37 36.47 4.57
3162 4615 2.481952 CAGTAGAGTTCCTTTGCAGTGC 59.518 50.000 8.58 8.58 0.00 4.40
3164 4617 5.070580 AGTTACAGTAGAGTTCCTTTGCAGT 59.929 40.000 0.00 0.00 0.00 4.40
3189 4642 6.704493 AGTTAACACCTACACATAACACACAG 59.296 38.462 8.61 0.00 0.00 3.66
3218 4671 8.617809 GTTTGGTTGTATACACGGAATATGATT 58.382 33.333 4.68 0.00 0.00 2.57
3226 4679 3.401182 GGTGTTTGGTTGTATACACGGA 58.599 45.455 4.68 0.00 41.28 4.69
3232 4685 5.212532 ACTACACGGTGTTTGGTTGTATA 57.787 39.130 20.15 0.00 0.00 1.47
3236 4689 2.793237 GCAACTACACGGTGTTTGGTTG 60.793 50.000 28.81 28.81 37.28 3.77
3246 4699 1.282248 CCACTCACGCAACTACACGG 61.282 60.000 0.00 0.00 0.00 4.94
3248 4701 1.000607 TCTCCACTCACGCAACTACAC 60.001 52.381 0.00 0.00 0.00 2.90
3261 4714 3.646162 TGGTGTCTTGTATTGTCTCCACT 59.354 43.478 0.00 0.00 0.00 4.00
3276 4729 0.678366 TGGCACGTTGTTTGGTGTCT 60.678 50.000 0.00 0.00 39.43 3.41
3301 4754 6.745474 GCATCTAGACTTTATGCATTAGGGGT 60.745 42.308 3.54 0.00 44.27 4.95
3313 4768 2.419574 GGTTGCCCGCATCTAGACTTTA 60.420 50.000 0.00 0.00 0.00 1.85
3319 4774 0.451783 GTTTGGTTGCCCGCATCTAG 59.548 55.000 0.00 0.00 0.00 2.43
3326 4781 1.220817 GCACATTGTTTGGTTGCCCG 61.221 55.000 0.00 0.00 0.00 6.13
3356 4811 2.433970 CCAGGGAAAACAGGCAGAAAAA 59.566 45.455 0.00 0.00 0.00 1.94
3361 4816 1.607467 CCCCAGGGAAAACAGGCAG 60.607 63.158 7.25 0.00 37.50 4.85
3362 4817 1.068943 TACCCCAGGGAAAACAGGCA 61.069 55.000 7.25 0.00 38.96 4.75
3363 4818 0.335019 ATACCCCAGGGAAAACAGGC 59.665 55.000 7.25 0.00 38.96 4.85
3364 4819 1.357761 ACATACCCCAGGGAAAACAGG 59.642 52.381 7.25 0.00 38.96 4.00
3365 4820 2.899303 ACATACCCCAGGGAAAACAG 57.101 50.000 7.25 0.00 38.96 3.16
3367 4822 2.956333 GCATACATACCCCAGGGAAAAC 59.044 50.000 7.25 0.00 38.96 2.43
3370 4825 1.900254 TGCATACATACCCCAGGGAA 58.100 50.000 7.25 0.00 38.96 3.97
3371 4826 1.900254 TTGCATACATACCCCAGGGA 58.100 50.000 7.25 0.00 38.96 4.20
3372 4827 2.517959 CATTGCATACATACCCCAGGG 58.482 52.381 0.00 0.00 42.03 4.45
3373 4828 1.888512 GCATTGCATACATACCCCAGG 59.111 52.381 3.15 0.00 0.00 4.45
3377 4845 1.270550 GCCTGCATTGCATACATACCC 59.729 52.381 12.53 0.00 38.13 3.69
3379 4847 3.713858 TTGCCTGCATTGCATACATAC 57.286 42.857 12.53 0.00 38.13 2.39
3381 4849 3.830744 ATTTGCCTGCATTGCATACAT 57.169 38.095 12.53 0.00 38.13 2.29
3392 4860 4.906065 TGTCATATGAGAATTTGCCTGC 57.094 40.909 5.42 0.00 0.00 4.85
3395 4863 5.581126 TGGTTGTCATATGAGAATTTGCC 57.419 39.130 17.37 13.88 29.85 4.52
3397 4865 7.060979 CGTGTTTGGTTGTCATATGAGAATTTG 59.939 37.037 17.37 0.90 29.85 2.32
3404 4872 3.430556 CGACGTGTTTGGTTGTCATATGA 59.569 43.478 0.00 0.00 0.00 2.15
3407 4875 2.823984 ACGACGTGTTTGGTTGTCATA 58.176 42.857 0.00 0.00 0.00 2.15
3430 4898 3.656457 TGCAACCAGATGAGCACAT 57.344 47.368 0.00 0.00 39.67 3.21
3442 4910 4.567959 GCCATCATTTTTCTATGTGCAACC 59.432 41.667 0.00 0.00 34.36 3.77
3446 4914 3.132646 TGGGCCATCATTTTTCTATGTGC 59.867 43.478 0.00 0.00 0.00 4.57
3454 4922 2.905085 TCACACATGGGCCATCATTTTT 59.095 40.909 18.16 0.00 0.00 1.94
3497 4977 4.725556 TTGGTCTTTTTGTCGAAGATCG 57.274 40.909 0.00 0.00 40.67 3.69
3504 4984 5.524646 TGGTACTAGTTTGGTCTTTTTGTCG 59.475 40.000 0.00 0.00 0.00 4.35
3521 5001 8.009220 TGGAATGCCCTAACCATTTGGTACTA 62.009 42.308 1.96 0.00 41.20 1.82
3547 5027 2.617308 TGTTTATTTTGGTGAACCGCGA 59.383 40.909 8.23 0.00 39.43 5.87
3549 5029 3.487942 GTGTGTTTATTTTGGTGAACCGC 59.512 43.478 0.00 0.00 39.43 5.68
3563 5043 4.449131 TCCACGTACATTTGGTGTGTTTA 58.551 39.130 0.00 0.00 42.24 2.01
3569 5049 3.334691 ACATCTCCACGTACATTTGGTG 58.665 45.455 0.00 3.75 34.19 4.17
3579 5059 0.970937 ACATCCGGACATCTCCACGT 60.971 55.000 6.12 0.00 36.12 4.49
3591 5071 4.192000 GTCTGCAGACACATCCGG 57.808 61.111 36.23 0.00 44.18 5.14
3608 5088 3.528370 CCGTCTCCCCTACCGCTG 61.528 72.222 0.00 0.00 0.00 5.18
3616 5096 1.522569 CTTGGATGACCGTCTCCCC 59.477 63.158 12.02 6.18 39.42 4.81
3625 5105 1.226491 GTGCATGCGCTTGGATGAC 60.226 57.895 23.77 3.54 43.50 3.06
3631 5111 0.598158 ACTTTTGGTGCATGCGCTTG 60.598 50.000 28.86 18.27 39.64 4.01
3632 5112 0.104671 AACTTTTGGTGCATGCGCTT 59.895 45.000 28.86 12.75 39.64 4.68
3634 5114 1.608093 CGAACTTTTGGTGCATGCGC 61.608 55.000 23.05 23.05 39.24 6.09
3651 5131 1.546923 TGTCGATTTGAACTAGCCCGA 59.453 47.619 0.00 0.00 0.00 5.14
3652 5132 2.004583 TGTCGATTTGAACTAGCCCG 57.995 50.000 0.00 0.00 0.00 6.13
3654 5134 3.126858 TGCATTGTCGATTTGAACTAGCC 59.873 43.478 0.00 0.00 0.00 3.93
3666 5146 1.872388 TCCGTCTTTTGCATTGTCGA 58.128 45.000 0.00 0.00 0.00 4.20
3667 5147 2.508867 CATCCGTCTTTTGCATTGTCG 58.491 47.619 0.00 0.00 0.00 4.35
3668 5148 2.487762 TCCATCCGTCTTTTGCATTGTC 59.512 45.455 0.00 0.00 0.00 3.18
3674 5154 3.848272 TGAATTCCATCCGTCTTTTGC 57.152 42.857 2.27 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.