Multiple sequence alignment - TraesCS1B01G110300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G110300 chr1B 100.000 3244 0 0 1 3244 123434994 123431751 0.000000e+00 5991.0
1 TraesCS1B01G110300 chr1D 91.028 2363 171 21 880 3223 78921275 78923615 0.000000e+00 3151.0
2 TraesCS1B01G110300 chr1D 90.132 152 12 3 284 433 78917760 78917910 9.180000e-46 195.0
3 TraesCS1B01G110300 chr2B 89.412 255 24 3 30 282 71395972 71396225 5.220000e-83 318.0
4 TraesCS1B01G110300 chr5B 88.672 256 27 2 30 285 50924421 50924168 8.740000e-81 311.0
5 TraesCS1B01G110300 chr7B 85.959 292 30 6 1 282 726924959 726924669 5.260000e-78 302.0
6 TraesCS1B01G110300 chr7B 85.813 289 33 6 1 282 645196685 645196972 1.890000e-77 300.0
7 TraesCS1B01G110300 chr7B 87.747 253 30 1 30 282 327631455 327631706 8.800000e-76 294.0
8 TraesCS1B01G110300 chr7B 86.517 267 32 4 30 295 535683893 535684156 1.140000e-74 291.0
9 TraesCS1B01G110300 chr6B 87.692 260 24 7 24 282 198964060 198964312 2.450000e-76 296.0
10 TraesCS1B01G110300 chr6B 84.880 291 39 4 1 286 22264281 22263991 4.100000e-74 289.0
11 TraesCS1B01G110300 chr6B 85.294 102 11 4 524 624 152183760 152183662 5.730000e-18 102.0
12 TraesCS1B01G110300 chr3B 86.873 259 32 2 24 282 556095004 556095260 4.100000e-74 289.0
13 TraesCS1B01G110300 chr3D 95.455 44 1 1 579 622 567740360 567740318 5.810000e-08 69.4
14 TraesCS1B01G110300 chr6A 89.796 49 5 0 568 616 464426500 464426452 2.700000e-06 63.9
15 TraesCS1B01G110300 chr6D 94.872 39 2 0 485 523 22451198 22451236 9.720000e-06 62.1
16 TraesCS1B01G110300 chr5A 94.872 39 2 0 485 523 534095304 534095342 9.720000e-06 62.1
17 TraesCS1B01G110300 chr7D 89.130 46 4 1 569 613 478329287 478329332 4.520000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G110300 chr1B 123431751 123434994 3243 True 5991 5991 100.00 1 3244 1 chr1B.!!$R1 3243
1 TraesCS1B01G110300 chr1D 78917760 78923615 5855 False 1673 3151 90.58 284 3223 2 chr1D.!!$F1 2939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.034059 CTGGACGAGTGGCTTGACTT 59.966 55.0 0.0 0.0 0.0 3.01 F
73 74 0.040067 GTGGCTTGACTTTTCGCCTG 60.040 55.0 0.0 0.0 42.9 4.85 F
1908 4980 0.032678 AGAGGTGCGTGTCTGTTGAG 59.967 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 4663 0.250684 TCCACCGCAAATTGCTCAGA 60.251 50.0 16.42 4.75 42.25 3.27 R
1961 5033 0.370273 GCCGTTGTCGTATTGCTCTG 59.630 55.0 0.00 0.00 35.01 3.35 R
3022 6105 0.029834 CGATGCAAACAGCCATAGCC 59.970 55.0 0.00 0.00 44.83 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.820744 CCGGGATTGGCAGGGTGG 62.821 72.222 0.00 0.00 0.00 4.61
24 25 4.820744 CGGGATTGGCAGGGTGGG 62.821 72.222 0.00 0.00 0.00 4.61
25 26 4.463788 GGGATTGGCAGGGTGGGG 62.464 72.222 0.00 0.00 0.00 4.96
26 27 4.463788 GGATTGGCAGGGTGGGGG 62.464 72.222 0.00 0.00 0.00 5.40
45 46 4.760220 AGGGGGTCAGGGGCGAAT 62.760 66.667 0.00 0.00 0.00 3.34
46 47 4.191015 GGGGGTCAGGGGCGAATC 62.191 72.222 0.00 0.00 0.00 2.52
47 48 3.090532 GGGGTCAGGGGCGAATCT 61.091 66.667 0.00 0.00 0.00 2.40
48 49 2.190578 GGGTCAGGGGCGAATCTG 59.809 66.667 0.00 0.00 0.00 2.90
49 50 2.190578 GGTCAGGGGCGAATCTGG 59.809 66.667 0.00 0.00 0.00 3.86
50 51 2.367202 GGTCAGGGGCGAATCTGGA 61.367 63.158 0.00 0.00 0.00 3.86
51 52 1.153349 GTCAGGGGCGAATCTGGAC 60.153 63.158 0.00 0.00 0.00 4.02
52 53 2.202932 CAGGGGCGAATCTGGACG 60.203 66.667 0.00 0.00 0.00 4.79
53 54 2.363795 AGGGGCGAATCTGGACGA 60.364 61.111 0.00 0.00 0.00 4.20
54 55 2.107141 GGGGCGAATCTGGACGAG 59.893 66.667 0.00 0.00 0.00 4.18
55 56 2.722201 GGGGCGAATCTGGACGAGT 61.722 63.158 0.00 0.00 0.00 4.18
56 57 1.519455 GGGCGAATCTGGACGAGTG 60.519 63.158 0.00 0.00 0.00 3.51
57 58 1.519455 GGCGAATCTGGACGAGTGG 60.519 63.158 0.00 0.00 0.00 4.00
58 59 2.167861 GCGAATCTGGACGAGTGGC 61.168 63.158 0.00 0.00 34.50 5.01
59 60 1.513158 CGAATCTGGACGAGTGGCT 59.487 57.895 0.00 0.00 0.00 4.75
60 61 0.108615 CGAATCTGGACGAGTGGCTT 60.109 55.000 0.00 0.00 0.00 4.35
61 62 1.363744 GAATCTGGACGAGTGGCTTG 58.636 55.000 0.00 0.00 0.00 4.01
62 63 0.976641 AATCTGGACGAGTGGCTTGA 59.023 50.000 0.00 0.00 0.00 3.02
63 64 0.247736 ATCTGGACGAGTGGCTTGAC 59.752 55.000 0.00 0.00 0.00 3.18
64 65 0.827925 TCTGGACGAGTGGCTTGACT 60.828 55.000 0.00 0.00 0.00 3.41
65 66 0.034059 CTGGACGAGTGGCTTGACTT 59.966 55.000 0.00 0.00 0.00 3.01
66 67 0.468226 TGGACGAGTGGCTTGACTTT 59.532 50.000 0.00 0.00 0.00 2.66
67 68 1.134220 TGGACGAGTGGCTTGACTTTT 60.134 47.619 0.00 0.00 0.00 2.27
68 69 1.531578 GGACGAGTGGCTTGACTTTTC 59.468 52.381 0.00 0.00 0.00 2.29
69 70 1.192534 GACGAGTGGCTTGACTTTTCG 59.807 52.381 0.00 0.00 0.00 3.46
70 71 0.110644 CGAGTGGCTTGACTTTTCGC 60.111 55.000 0.00 0.00 0.00 4.70
71 72 0.238553 GAGTGGCTTGACTTTTCGCC 59.761 55.000 0.00 0.00 42.78 5.54
72 73 0.179018 AGTGGCTTGACTTTTCGCCT 60.179 50.000 0.00 0.00 42.90 5.52
73 74 0.040067 GTGGCTTGACTTTTCGCCTG 60.040 55.000 0.00 0.00 42.90 4.85
74 75 1.172180 TGGCTTGACTTTTCGCCTGG 61.172 55.000 0.00 0.00 42.90 4.45
75 76 1.081175 GCTTGACTTTTCGCCTGGC 60.081 57.895 9.11 9.11 0.00 4.85
76 77 1.795170 GCTTGACTTTTCGCCTGGCA 61.795 55.000 20.29 2.90 0.00 4.92
77 78 0.239347 CTTGACTTTTCGCCTGGCAG 59.761 55.000 20.29 7.75 0.00 4.85
78 79 0.465460 TTGACTTTTCGCCTGGCAGT 60.465 50.000 20.29 14.25 0.00 4.40
79 80 1.165907 TGACTTTTCGCCTGGCAGTG 61.166 55.000 20.29 5.68 0.00 3.66
80 81 1.152963 ACTTTTCGCCTGGCAGTGT 60.153 52.632 20.29 6.72 0.00 3.55
81 82 1.283793 CTTTTCGCCTGGCAGTGTG 59.716 57.895 20.29 11.50 0.00 3.82
82 83 2.133742 CTTTTCGCCTGGCAGTGTGG 62.134 60.000 20.29 0.00 0.00 4.17
91 92 2.753043 GCAGTGTGGCCCCAGATG 60.753 66.667 0.00 0.00 0.00 2.90
92 93 2.759114 CAGTGTGGCCCCAGATGT 59.241 61.111 0.00 0.00 0.00 3.06
93 94 1.676635 CAGTGTGGCCCCAGATGTG 60.677 63.158 0.00 0.00 0.00 3.21
94 95 3.064324 GTGTGGCCCCAGATGTGC 61.064 66.667 0.00 0.00 0.00 4.57
95 96 3.259314 TGTGGCCCCAGATGTGCT 61.259 61.111 0.00 0.00 0.00 4.40
96 97 2.036256 GTGGCCCCAGATGTGCTT 59.964 61.111 0.00 0.00 0.00 3.91
97 98 1.607467 GTGGCCCCAGATGTGCTTT 60.607 57.895 0.00 0.00 0.00 3.51
98 99 1.155859 TGGCCCCAGATGTGCTTTT 59.844 52.632 0.00 0.00 0.00 2.27
99 100 0.899717 TGGCCCCAGATGTGCTTTTC 60.900 55.000 0.00 0.00 0.00 2.29
100 101 1.607801 GGCCCCAGATGTGCTTTTCC 61.608 60.000 0.00 0.00 0.00 3.13
101 102 1.607801 GCCCCAGATGTGCTTTTCCC 61.608 60.000 0.00 0.00 0.00 3.97
102 103 0.040204 CCCCAGATGTGCTTTTCCCT 59.960 55.000 0.00 0.00 0.00 4.20
103 104 1.550869 CCCCAGATGTGCTTTTCCCTT 60.551 52.381 0.00 0.00 0.00 3.95
104 105 1.547372 CCCAGATGTGCTTTTCCCTTG 59.453 52.381 0.00 0.00 0.00 3.61
105 106 1.067354 CCAGATGTGCTTTTCCCTTGC 60.067 52.381 0.00 0.00 0.00 4.01
106 107 0.883833 AGATGTGCTTTTCCCTTGCG 59.116 50.000 0.00 0.00 0.00 4.85
107 108 0.733909 GATGTGCTTTTCCCTTGCGC 60.734 55.000 0.00 0.00 37.67 6.09
108 109 2.049156 GTGCTTTTCCCTTGCGCC 60.049 61.111 4.18 0.00 0.00 6.53
109 110 3.669344 TGCTTTTCCCTTGCGCCG 61.669 61.111 4.18 0.00 0.00 6.46
110 111 4.419939 GCTTTTCCCTTGCGCCGG 62.420 66.667 4.18 5.21 0.00 6.13
111 112 2.671619 CTTTTCCCTTGCGCCGGA 60.672 61.111 5.05 8.98 0.00 5.14
112 113 2.671619 TTTTCCCTTGCGCCGGAG 60.672 61.111 5.05 1.55 0.00 4.63
173 174 4.693525 CGGGCGCAAAAACGGGTC 62.694 66.667 10.83 0.00 0.00 4.46
174 175 4.693525 GGGCGCAAAAACGGGTCG 62.694 66.667 10.83 0.00 0.00 4.79
175 176 3.652000 GGCGCAAAAACGGGTCGA 61.652 61.111 10.83 0.00 0.00 4.20
176 177 2.127383 GCGCAAAAACGGGTCGAG 60.127 61.111 0.30 0.00 0.00 4.04
177 178 2.888998 GCGCAAAAACGGGTCGAGT 61.889 57.895 0.30 0.00 0.00 4.18
178 179 1.203313 CGCAAAAACGGGTCGAGTC 59.797 57.895 0.00 0.00 0.00 3.36
179 180 1.203313 GCAAAAACGGGTCGAGTCG 59.797 57.895 6.09 6.09 0.00 4.18
180 181 1.857364 CAAAAACGGGTCGAGTCGG 59.143 57.895 13.54 0.00 0.00 4.79
181 182 1.957695 AAAAACGGGTCGAGTCGGC 60.958 57.895 13.54 11.40 0.00 5.54
182 183 2.647680 AAAAACGGGTCGAGTCGGCA 62.648 55.000 20.23 0.00 30.88 5.69
183 184 3.569049 AAACGGGTCGAGTCGGCAG 62.569 63.158 20.23 14.44 30.88 4.85
185 186 3.744719 CGGGTCGAGTCGGCAGAA 61.745 66.667 20.23 0.00 30.88 3.02
186 187 2.893398 GGGTCGAGTCGGCAGAAT 59.107 61.111 20.23 0.00 30.88 2.40
187 188 1.218316 GGGTCGAGTCGGCAGAATT 59.782 57.895 20.23 0.00 30.88 2.17
188 189 0.806492 GGGTCGAGTCGGCAGAATTC 60.806 60.000 20.23 0.00 30.88 2.17
189 190 1.140407 GGTCGAGTCGGCAGAATTCG 61.140 60.000 20.23 13.34 37.20 3.34
190 191 1.138883 TCGAGTCGGCAGAATTCGG 59.861 57.895 13.54 0.69 36.79 4.30
191 192 2.517450 CGAGTCGGCAGAATTCGGC 61.517 63.158 20.68 20.68 34.27 5.54
195 196 2.509336 CGGCAGAATTCGGCGTCT 60.509 61.111 26.04 0.00 46.26 4.18
196 197 2.100631 CGGCAGAATTCGGCGTCTT 61.101 57.895 26.04 1.01 46.26 3.01
197 198 1.425428 GGCAGAATTCGGCGTCTTG 59.575 57.895 21.71 4.57 37.94 3.02
198 199 1.425428 GCAGAATTCGGCGTCTTGG 59.575 57.895 14.79 0.00 0.00 3.61
199 200 1.982073 GCAGAATTCGGCGTCTTGGG 61.982 60.000 14.79 0.00 0.00 4.12
200 201 1.078426 AGAATTCGGCGTCTTGGGG 60.078 57.895 6.85 0.00 0.00 4.96
201 202 2.045340 AATTCGGCGTCTTGGGGG 60.045 61.111 6.85 0.00 0.00 5.40
202 203 4.796495 ATTCGGCGTCTTGGGGGC 62.796 66.667 6.85 0.00 0.00 5.80
254 255 2.728397 AAAAACGCCTGGGAAGGAC 58.272 52.632 0.00 0.00 0.00 3.85
255 256 0.826256 AAAAACGCCTGGGAAGGACC 60.826 55.000 0.00 0.00 38.08 4.46
256 257 1.716028 AAAACGCCTGGGAAGGACCT 61.716 55.000 0.00 0.00 38.98 3.85
257 258 2.411765 AAACGCCTGGGAAGGACCTG 62.412 60.000 0.00 0.00 38.98 4.00
258 259 4.785453 CGCCTGGGAAGGACCTGC 62.785 72.222 0.00 0.00 38.98 4.85
259 260 3.334054 GCCTGGGAAGGACCTGCT 61.334 66.667 0.00 0.00 38.98 4.24
260 261 2.673523 CCTGGGAAGGACCTGCTG 59.326 66.667 0.00 0.00 38.98 4.41
261 262 1.920325 CCTGGGAAGGACCTGCTGA 60.920 63.158 0.00 0.00 38.98 4.26
262 263 1.601171 CTGGGAAGGACCTGCTGAG 59.399 63.158 0.00 0.00 38.98 3.35
263 264 1.908340 CTGGGAAGGACCTGCTGAGG 61.908 65.000 0.00 0.00 46.21 3.86
264 265 2.674220 GGGAAGGACCTGCTGAGGG 61.674 68.421 0.00 0.00 44.84 4.30
265 266 1.920835 GGAAGGACCTGCTGAGGGT 60.921 63.158 0.00 0.00 44.84 4.34
266 267 1.298014 GAAGGACCTGCTGAGGGTG 59.702 63.158 0.00 0.00 44.84 4.61
267 268 2.811542 GAAGGACCTGCTGAGGGTGC 62.812 65.000 0.00 0.00 44.84 5.01
268 269 4.767255 GGACCTGCTGAGGGTGCG 62.767 72.222 0.00 0.00 44.84 5.34
269 270 4.767255 GACCTGCTGAGGGTGCGG 62.767 72.222 0.00 0.00 44.84 5.69
275 276 4.463879 CTGAGGGTGCGGCTGGAG 62.464 72.222 0.00 0.00 0.00 3.86
277 278 3.474570 GAGGGTGCGGCTGGAGAT 61.475 66.667 0.00 0.00 0.00 2.75
278 279 3.746949 GAGGGTGCGGCTGGAGATG 62.747 68.421 0.00 0.00 0.00 2.90
280 281 4.479993 GGTGCGGCTGGAGATGCT 62.480 66.667 0.00 0.00 0.00 3.79
281 282 2.894387 GTGCGGCTGGAGATGCTC 60.894 66.667 0.00 0.00 0.00 4.26
317 318 1.881973 TGTCTTGCAATTGAGACAGGC 59.118 47.619 20.41 8.11 45.26 4.85
318 319 1.135859 GTCTTGCAATTGAGACAGGCG 60.136 52.381 17.92 0.00 41.45 5.52
319 320 0.877071 CTTGCAATTGAGACAGGCGT 59.123 50.000 10.34 0.00 0.00 5.68
320 321 0.874390 TTGCAATTGAGACAGGCGTC 59.126 50.000 10.34 1.99 42.95 5.19
367 368 1.099879 ATTCAGGCATCCGCTTGCTC 61.100 55.000 7.59 0.00 44.54 4.26
368 369 2.437180 CAGGCATCCGCTTGCTCA 60.437 61.111 7.59 0.00 42.38 4.26
376 377 1.896220 TCCGCTTGCTCATTGTCTTT 58.104 45.000 0.00 0.00 0.00 2.52
379 380 2.744202 CCGCTTGCTCATTGTCTTTAGT 59.256 45.455 0.00 0.00 0.00 2.24
465 2103 6.870971 TTGAGCATTAACTTTTTAGGACGT 57.129 33.333 0.00 0.00 0.00 4.34
469 2107 4.399978 CATTAACTTTTTAGGACGTGGCG 58.600 43.478 0.00 0.00 0.00 5.69
502 2140 6.582677 TTTTCTTTTTCCCTCGAATATGCA 57.417 33.333 0.00 0.00 0.00 3.96
503 2141 6.773976 TTTCTTTTTCCCTCGAATATGCAT 57.226 33.333 3.79 3.79 0.00 3.96
504 2142 5.756195 TCTTTTTCCCTCGAATATGCATG 57.244 39.130 10.16 0.00 0.00 4.06
505 2143 5.436175 TCTTTTTCCCTCGAATATGCATGA 58.564 37.500 10.16 0.00 0.00 3.07
506 2144 5.528690 TCTTTTTCCCTCGAATATGCATGAG 59.471 40.000 10.16 7.13 0.00 2.90
507 2145 4.422073 TTTCCCTCGAATATGCATGAGT 57.578 40.909 10.16 0.00 0.00 3.41
508 2146 5.545063 TTTCCCTCGAATATGCATGAGTA 57.455 39.130 10.16 0.00 0.00 2.59
509 2147 5.745312 TTCCCTCGAATATGCATGAGTAT 57.255 39.130 10.16 0.00 0.00 2.12
510 2148 5.077134 TCCCTCGAATATGCATGAGTATG 57.923 43.478 10.16 0.00 37.36 2.39
532 2170 8.986847 GTATGCATATCATATATCAAGGAGTGC 58.013 37.037 10.16 0.00 39.63 4.40
533 2171 6.351711 TGCATATCATATATCAAGGAGTGCC 58.648 40.000 0.00 0.00 0.00 5.01
534 2172 7.147355 ATGCATATCATATATCAAGGAGTGCCT 60.147 37.037 0.00 0.00 39.02 4.75
535 2173 6.705381 GCATATCATATATCAAGGAGTGCCTC 59.295 42.308 0.00 0.00 46.28 4.70
543 2181 2.262915 GGAGTGCCTCCGTCACAG 59.737 66.667 5.60 0.00 41.08 3.66
544 2182 2.574955 GGAGTGCCTCCGTCACAGT 61.575 63.158 5.60 0.00 41.08 3.55
545 2183 1.367840 GAGTGCCTCCGTCACAGTT 59.632 57.895 0.00 0.00 36.93 3.16
546 2184 0.249911 GAGTGCCTCCGTCACAGTTT 60.250 55.000 0.00 0.00 36.93 2.66
547 2185 0.180406 AGTGCCTCCGTCACAGTTTT 59.820 50.000 0.00 0.00 36.93 2.43
548 2186 1.414919 AGTGCCTCCGTCACAGTTTTA 59.585 47.619 0.00 0.00 36.93 1.52
549 2187 2.038557 AGTGCCTCCGTCACAGTTTTAT 59.961 45.455 0.00 0.00 36.93 1.40
550 2188 3.259876 AGTGCCTCCGTCACAGTTTTATA 59.740 43.478 0.00 0.00 36.93 0.98
551 2189 3.998341 GTGCCTCCGTCACAGTTTTATAA 59.002 43.478 0.00 0.00 34.73 0.98
552 2190 4.453136 GTGCCTCCGTCACAGTTTTATAAA 59.547 41.667 0.00 0.00 34.73 1.40
553 2191 5.123344 GTGCCTCCGTCACAGTTTTATAAAT 59.877 40.000 0.00 0.00 34.73 1.40
554 2192 5.123186 TGCCTCCGTCACAGTTTTATAAATG 59.877 40.000 0.00 0.00 35.55 2.32
555 2193 5.123344 GCCTCCGTCACAGTTTTATAAATGT 59.877 40.000 0.00 0.00 42.79 2.71
556 2194 6.674760 GCCTCCGTCACAGTTTTATAAATGTC 60.675 42.308 0.00 0.00 40.30 3.06
557 2195 6.594159 CCTCCGTCACAGTTTTATAAATGTCT 59.406 38.462 0.00 0.00 40.30 3.41
558 2196 7.119262 CCTCCGTCACAGTTTTATAAATGTCTT 59.881 37.037 0.00 0.00 40.30 3.01
559 2197 9.146984 CTCCGTCACAGTTTTATAAATGTCTTA 57.853 33.333 0.00 0.00 40.30 2.10
560 2198 9.491675 TCCGTCACAGTTTTATAAATGTCTTAA 57.508 29.630 0.00 0.00 40.30 1.85
576 2214 9.654663 AAATGTCTTAATACAACACTACTCCTC 57.345 33.333 0.00 0.00 32.02 3.71
577 2215 7.770366 TGTCTTAATACAACACTACTCCTCA 57.230 36.000 0.00 0.00 0.00 3.86
578 2216 7.600065 TGTCTTAATACAACACTACTCCTCAC 58.400 38.462 0.00 0.00 0.00 3.51
579 2217 7.450634 TGTCTTAATACAACACTACTCCTCACT 59.549 37.037 0.00 0.00 0.00 3.41
580 2218 8.954350 GTCTTAATACAACACTACTCCTCACTA 58.046 37.037 0.00 0.00 0.00 2.74
581 2219 8.954350 TCTTAATACAACACTACTCCTCACTAC 58.046 37.037 0.00 0.00 0.00 2.73
582 2220 8.874744 TTAATACAACACTACTCCTCACTACT 57.125 34.615 0.00 0.00 0.00 2.57
583 2221 7.393841 AATACAACACTACTCCTCACTACTC 57.606 40.000 0.00 0.00 0.00 2.59
584 2222 3.752222 ACAACACTACTCCTCACTACTCG 59.248 47.826 0.00 0.00 0.00 4.18
585 2223 2.358015 ACACTACTCCTCACTACTCGC 58.642 52.381 0.00 0.00 0.00 5.03
586 2224 1.671845 CACTACTCCTCACTACTCGCC 59.328 57.143 0.00 0.00 0.00 5.54
587 2225 1.310904 CTACTCCTCACTACTCGCCC 58.689 60.000 0.00 0.00 0.00 6.13
588 2226 0.622136 TACTCCTCACTACTCGCCCA 59.378 55.000 0.00 0.00 0.00 5.36
589 2227 0.966370 ACTCCTCACTACTCGCCCAC 60.966 60.000 0.00 0.00 0.00 4.61
590 2228 1.668101 CTCCTCACTACTCGCCCACC 61.668 65.000 0.00 0.00 0.00 4.61
591 2229 1.682684 CCTCACTACTCGCCCACCT 60.683 63.158 0.00 0.00 0.00 4.00
592 2230 1.668101 CCTCACTACTCGCCCACCTC 61.668 65.000 0.00 0.00 0.00 3.85
593 2231 0.681564 CTCACTACTCGCCCACCTCT 60.682 60.000 0.00 0.00 0.00 3.69
594 2232 0.680280 TCACTACTCGCCCACCTCTC 60.680 60.000 0.00 0.00 0.00 3.20
595 2233 0.681564 CACTACTCGCCCACCTCTCT 60.682 60.000 0.00 0.00 0.00 3.10
596 2234 0.917533 ACTACTCGCCCACCTCTCTA 59.082 55.000 0.00 0.00 0.00 2.43
597 2235 1.284198 ACTACTCGCCCACCTCTCTAA 59.716 52.381 0.00 0.00 0.00 2.10
598 2236 2.091775 ACTACTCGCCCACCTCTCTAAT 60.092 50.000 0.00 0.00 0.00 1.73
599 2237 1.404843 ACTCGCCCACCTCTCTAATC 58.595 55.000 0.00 0.00 0.00 1.75
600 2238 1.063567 ACTCGCCCACCTCTCTAATCT 60.064 52.381 0.00 0.00 0.00 2.40
601 2239 2.175069 ACTCGCCCACCTCTCTAATCTA 59.825 50.000 0.00 0.00 0.00 1.98
602 2240 2.554893 CTCGCCCACCTCTCTAATCTAC 59.445 54.545 0.00 0.00 0.00 2.59
603 2241 2.092049 TCGCCCACCTCTCTAATCTACA 60.092 50.000 0.00 0.00 0.00 2.74
604 2242 2.294791 CGCCCACCTCTCTAATCTACAG 59.705 54.545 0.00 0.00 0.00 2.74
605 2243 3.567397 GCCCACCTCTCTAATCTACAGA 58.433 50.000 0.00 0.00 0.00 3.41
606 2244 3.961408 GCCCACCTCTCTAATCTACAGAA 59.039 47.826 0.00 0.00 0.00 3.02
607 2245 4.038642 GCCCACCTCTCTAATCTACAGAAG 59.961 50.000 0.00 0.00 0.00 2.85
608 2246 5.450453 CCCACCTCTCTAATCTACAGAAGA 58.550 45.833 0.00 0.00 39.02 2.87
609 2247 5.894393 CCCACCTCTCTAATCTACAGAAGAA 59.106 44.000 0.00 0.00 37.89 2.52
610 2248 6.040391 CCCACCTCTCTAATCTACAGAAGAAG 59.960 46.154 0.00 0.00 37.89 2.85
611 2249 6.040391 CCACCTCTCTAATCTACAGAAGAAGG 59.960 46.154 0.00 0.00 37.89 3.46
612 2250 6.040391 CACCTCTCTAATCTACAGAAGAAGGG 59.960 46.154 0.00 0.00 37.89 3.95
613 2251 5.538433 CCTCTCTAATCTACAGAAGAAGGGG 59.462 48.000 0.00 0.00 37.89 4.79
614 2252 6.093617 TCTCTAATCTACAGAAGAAGGGGT 57.906 41.667 0.00 0.00 37.89 4.95
615 2253 6.130569 TCTCTAATCTACAGAAGAAGGGGTC 58.869 44.000 0.00 0.00 37.89 4.46
616 2254 5.838955 TCTAATCTACAGAAGAAGGGGTCA 58.161 41.667 0.00 0.00 37.89 4.02
617 2255 6.261435 TCTAATCTACAGAAGAAGGGGTCAA 58.739 40.000 0.00 0.00 37.89 3.18
618 2256 4.828072 ATCTACAGAAGAAGGGGTCAAC 57.172 45.455 0.00 0.00 37.89 3.18
619 2257 3.858135 TCTACAGAAGAAGGGGTCAACT 58.142 45.455 0.00 0.00 0.00 3.16
620 2258 4.232091 TCTACAGAAGAAGGGGTCAACTT 58.768 43.478 0.00 0.00 0.00 2.66
621 2259 3.953542 ACAGAAGAAGGGGTCAACTTT 57.046 42.857 0.00 0.00 0.00 2.66
622 2260 4.251103 ACAGAAGAAGGGGTCAACTTTT 57.749 40.909 0.00 0.00 0.00 2.27
630 2268 6.062749 AGAAGGGGTCAACTTTTCTTAGAAC 58.937 40.000 0.00 0.00 0.00 3.01
657 2295 4.932200 AGAAATTTTGTGTTGGTTTTGCGA 59.068 33.333 0.00 0.00 0.00 5.10
675 2313 1.062587 CGACGGGATTTTGAGATGTGC 59.937 52.381 0.00 0.00 0.00 4.57
688 2326 3.134623 TGAGATGTGCCCGAAACATATCT 59.865 43.478 15.69 13.02 45.30 1.98
717 2357 1.508088 CGCGTACCGTTTCCTACCT 59.492 57.895 0.00 0.00 0.00 3.08
732 2372 9.769093 CGTTTCCTACCTTATTTGTATTTTGAG 57.231 33.333 0.00 0.00 0.00 3.02
733 2373 9.569167 GTTTCCTACCTTATTTGTATTTTGAGC 57.431 33.333 0.00 0.00 0.00 4.26
734 2374 9.528489 TTTCCTACCTTATTTGTATTTTGAGCT 57.472 29.630 0.00 0.00 0.00 4.09
735 2375 9.528489 TTCCTACCTTATTTGTATTTTGAGCTT 57.472 29.630 0.00 0.00 0.00 3.74
736 2376 9.528489 TCCTACCTTATTTGTATTTTGAGCTTT 57.472 29.630 0.00 0.00 0.00 3.51
740 2380 9.476202 ACCTTATTTGTATTTTGAGCTTTTGAC 57.524 29.630 0.00 0.00 0.00 3.18
741 2381 9.474920 CCTTATTTGTATTTTGAGCTTTTGACA 57.525 29.630 0.00 0.00 0.00 3.58
759 2399 4.406456 TGACACTGTTTCCTGCCATATTT 58.594 39.130 0.00 0.00 0.00 1.40
770 2410 6.313519 TCCTGCCATATTTGTAGATATCCC 57.686 41.667 0.00 0.00 0.00 3.85
788 2428 0.250124 CCCTGTGTAAACGTGAGGCA 60.250 55.000 0.00 0.00 0.00 4.75
813 2453 9.619316 CACGATTTCCATTCTATTTTTAACACA 57.381 29.630 0.00 0.00 0.00 3.72
823 2463 6.607689 TCTATTTTTAACACAACAGCGATGG 58.392 36.000 5.32 0.00 0.00 3.51
843 3875 4.996793 TGGATGAATCAAGAAGGGAAACA 58.003 39.130 0.00 0.00 0.00 2.83
868 3900 1.249407 GTTTCAAACCATACCGCCCA 58.751 50.000 0.00 0.00 0.00 5.36
869 3901 1.201414 GTTTCAAACCATACCGCCCAG 59.799 52.381 0.00 0.00 0.00 4.45
895 3963 5.307196 CCACTACATAAGCACCCTATTACCT 59.693 44.000 0.00 0.00 0.00 3.08
906 3974 3.053917 ACCCTATTACCTCGCCAACAATT 60.054 43.478 0.00 0.00 0.00 2.32
918 3986 2.036346 GCCAACAATTCCAGAAGCACTT 59.964 45.455 0.00 0.00 0.00 3.16
919 3987 3.645884 CCAACAATTCCAGAAGCACTTG 58.354 45.455 0.00 0.00 0.00 3.16
942 4010 3.251484 GTCCATCCCATCTCTAATCCCA 58.749 50.000 0.00 0.00 0.00 4.37
943 4011 3.262915 GTCCATCCCATCTCTAATCCCAG 59.737 52.174 0.00 0.00 0.00 4.45
944 4012 3.144701 TCCATCCCATCTCTAATCCCAGA 59.855 47.826 0.00 0.00 0.00 3.86
945 4013 3.518705 CCATCCCATCTCTAATCCCAGAG 59.481 52.174 0.00 0.00 42.96 3.35
957 4025 8.548025 TCTCTAATCCCAGAGATATCTGTAGAG 58.452 40.741 23.78 23.78 44.82 2.43
963 4031 3.187432 CAGAGATATCTGTAGAGCGCGAA 59.813 47.826 12.10 0.00 33.32 4.70
984 4052 1.671328 GCCTCATCGCCTAAAACCTTC 59.329 52.381 0.00 0.00 0.00 3.46
1006 4074 1.004560 CCAGCACTCCTGAAGCGAA 60.005 57.895 0.00 0.00 44.64 4.70
1007 4075 0.603707 CCAGCACTCCTGAAGCGAAA 60.604 55.000 0.00 0.00 44.64 3.46
1034 4106 9.815306 AGAATAGGTAGAAACTAGAGCATCATA 57.185 33.333 0.00 0.00 37.82 2.15
1044 4116 4.526262 ACTAGAGCATCATAACCCAGCTAG 59.474 45.833 0.00 0.00 37.82 3.42
1060 4132 1.672881 GCTAGTATCCACCACGTACGT 59.327 52.381 16.72 16.72 0.00 3.57
1061 4133 2.286654 GCTAGTATCCACCACGTACGTC 60.287 54.545 19.94 4.53 0.00 4.34
1062 4134 1.825090 AGTATCCACCACGTACGTCA 58.175 50.000 19.94 0.25 0.00 4.35
1063 4135 1.470098 AGTATCCACCACGTACGTCAC 59.530 52.381 19.94 7.75 0.00 3.67
1064 4136 1.470098 GTATCCACCACGTACGTCACT 59.530 52.381 19.94 0.00 0.00 3.41
1065 4137 0.242825 ATCCACCACGTACGTCACTG 59.757 55.000 19.94 13.11 0.00 3.66
1066 4138 2.019951 CCACCACGTACGTCACTGC 61.020 63.158 19.94 0.00 0.00 4.40
1128 4200 0.678048 GCCTTGGCGACATCTTCCTT 60.678 55.000 0.00 0.00 42.32 3.36
1297 4369 0.389817 CGAAGATGAACGTGCCTCCA 60.390 55.000 0.00 0.00 0.00 3.86
1401 4473 0.750546 CCGGTGGTCTCATCGTCCTA 60.751 60.000 0.00 0.00 45.33 2.94
1422 4494 2.596851 AAGCAGGACCGCTCCACAT 61.597 57.895 10.58 0.00 42.89 3.21
1423 4495 2.809861 AAGCAGGACCGCTCCACATG 62.810 60.000 10.58 0.00 42.89 3.21
1455 4527 3.926527 TCATGAATCTTTTCACCGACTCG 59.073 43.478 0.00 0.00 44.36 4.18
1457 4529 3.314553 TGAATCTTTTCACCGACTCGTC 58.685 45.455 0.00 0.00 36.94 4.20
1470 4542 0.603569 ACTCGTCCATCAGTTTCGCT 59.396 50.000 0.00 0.00 0.00 4.93
1591 4663 0.320771 CTACACGGCCAAGCTTGACT 60.321 55.000 28.05 2.59 0.00 3.41
1660 4732 1.271325 CCATATGGGGCATTGACGCTA 60.271 52.381 14.52 0.00 0.00 4.26
1667 4739 1.548973 GGCATTGACGCTACCGATCG 61.549 60.000 8.51 8.51 38.29 3.69
1797 4869 1.066143 GTCATCCATCGTCAACACCCT 60.066 52.381 0.00 0.00 0.00 4.34
1841 4913 5.182380 TCAAGGTGAACGTTGAAGAAAAAGT 59.818 36.000 5.00 0.00 44.56 2.66
1908 4980 0.032678 AGAGGTGCGTGTCTGTTGAG 59.967 55.000 0.00 0.00 0.00 3.02
1941 5013 0.451783 CTACCATTGAAGGCAACCGC 59.548 55.000 0.00 0.00 36.72 5.68
1961 5033 2.338500 CGTCTTCTACTTTGGTGGAGC 58.662 52.381 0.00 0.00 34.54 4.70
1968 5040 0.183492 ACTTTGGTGGAGCAGAGCAA 59.817 50.000 0.00 0.00 0.00 3.91
1977 5049 1.661112 GGAGCAGAGCAATACGACAAC 59.339 52.381 0.00 0.00 0.00 3.32
1981 5053 1.076533 AGAGCAATACGACAACGGCG 61.077 55.000 4.80 4.80 44.46 6.46
2146 5218 0.322098 CCCAACTGGCGTATGAACCA 60.322 55.000 0.00 0.00 0.00 3.67
2154 5226 2.027100 TGGCGTATGAACCACATAACCA 60.027 45.455 0.00 0.00 42.52 3.67
2179 5251 1.568123 TGTGGCAATGGGGTATGATGA 59.432 47.619 0.00 0.00 0.00 2.92
2180 5252 2.024560 TGTGGCAATGGGGTATGATGAA 60.025 45.455 0.00 0.00 0.00 2.57
2182 5254 3.642848 GTGGCAATGGGGTATGATGAAAT 59.357 43.478 0.00 0.00 0.00 2.17
2185 5257 4.503643 GGCAATGGGGTATGATGAAATTGG 60.504 45.833 0.00 0.00 0.00 3.16
2203 5275 9.923786 TGAAATTGGATAATATTGTAAACGTCG 57.076 29.630 0.00 0.00 0.00 5.12
2220 5292 1.398390 GTCGGGTGTGATTGATTGAGC 59.602 52.381 0.00 0.00 0.00 4.26
2222 5294 2.499693 TCGGGTGTGATTGATTGAGCTA 59.500 45.455 0.00 0.00 0.00 3.32
2230 5302 7.020010 GTGTGATTGATTGAGCTACAAGAAAG 58.980 38.462 0.00 0.00 42.02 2.62
2255 5329 8.536175 AGTATTATTGTTTTTGGGGGTATTGTG 58.464 33.333 0.00 0.00 0.00 3.33
2256 5330 6.749036 TTATTGTTTTTGGGGGTATTGTGT 57.251 33.333 0.00 0.00 0.00 3.72
2269 5343 7.016661 TGGGGGTATTGTGTATTTCAAATTTGT 59.983 33.333 17.47 1.67 0.00 2.83
2270 5344 7.547722 GGGGGTATTGTGTATTTCAAATTTGTC 59.452 37.037 17.47 5.82 0.00 3.18
2271 5345 7.274686 GGGGTATTGTGTATTTCAAATTTGTCG 59.725 37.037 17.47 0.00 0.00 4.35
2286 5360 5.622770 ATTTGTCGGTTGAATGTTCTACC 57.377 39.130 13.95 13.95 45.58 3.18
2311 5385 9.698309 CCGATCAGTATATGTCTGTTAAAATCT 57.302 33.333 8.76 0.00 34.86 2.40
2340 5414 3.832276 TGTCAGTTGCAAGTTTGTTCAC 58.168 40.909 3.38 0.00 0.00 3.18
2341 5415 3.254411 TGTCAGTTGCAAGTTTGTTCACA 59.746 39.130 3.38 0.05 0.00 3.58
2353 5427 7.649306 GCAAGTTTGTTCACATAACTCTTGAAT 59.351 33.333 16.62 0.00 32.10 2.57
2366 5440 4.950050 ACTCTTGAATGTCGAGTTGTTCT 58.050 39.130 0.00 0.00 34.55 3.01
2385 5459 9.031360 GTTGTTCTTTCCTTTGGAAGTTAAATC 57.969 33.333 0.00 0.00 43.06 2.17
2386 5460 8.299990 TGTTCTTTCCTTTGGAAGTTAAATCA 57.700 30.769 0.00 0.00 43.06 2.57
2387 5461 8.923270 TGTTCTTTCCTTTGGAAGTTAAATCAT 58.077 29.630 0.00 0.00 43.06 2.45
2408 5485 9.461312 AATCATATAAGTAGAACAACCAAGCAA 57.539 29.630 0.00 0.00 0.00 3.91
2419 5496 7.168219 AGAACAACCAAGCAAGAGACATATTA 58.832 34.615 0.00 0.00 0.00 0.98
2423 5500 4.161565 ACCAAGCAAGAGACATATTACGGA 59.838 41.667 0.00 0.00 0.00 4.69
2425 5502 5.760253 CCAAGCAAGAGACATATTACGGAAT 59.240 40.000 0.00 0.00 0.00 3.01
2485 5562 1.075525 TCCACGAGGTAGGATGGGG 60.076 63.158 0.00 0.00 35.89 4.96
2502 5579 1.609239 GGTCCATCCATGCCTCACA 59.391 57.895 0.00 0.00 35.97 3.58
2511 5588 0.926155 CATGCCTCACAATCGTCGAG 59.074 55.000 0.00 0.00 0.00 4.04
2520 5597 5.055642 TCACAATCGTCGAGTAGAACAAT 57.944 39.130 0.00 0.00 0.00 2.71
2522 5599 4.857037 CACAATCGTCGAGTAGAACAATCA 59.143 41.667 0.00 0.00 0.00 2.57
2535 5613 8.154649 AGTAGAACAATCAGTAAACCTTGTTG 57.845 34.615 4.42 0.00 40.76 3.33
2540 5618 5.833131 ACAATCAGTAAACCTTGTTGATGGT 59.167 36.000 0.00 0.00 38.35 3.55
2541 5619 5.964958 ATCAGTAAACCTTGTTGATGGTG 57.035 39.130 0.00 0.00 36.57 4.17
2550 5628 1.144691 TGTTGATGGTGGGTTCCTCA 58.855 50.000 0.00 0.00 0.00 3.86
2553 5631 3.332187 TGTTGATGGTGGGTTCCTCATTA 59.668 43.478 0.00 0.00 0.00 1.90
2554 5632 4.202620 TGTTGATGGTGGGTTCCTCATTAA 60.203 41.667 0.00 0.00 0.00 1.40
2559 5637 2.576648 GGTGGGTTCCTCATTAACCTCT 59.423 50.000 5.09 0.00 44.83 3.69
2562 5640 5.368989 GTGGGTTCCTCATTAACCTCTATG 58.631 45.833 5.09 0.00 44.83 2.23
2567 5645 6.931840 GGTTCCTCATTAACCTCTATGATGAC 59.068 42.308 0.00 0.00 42.63 3.06
2603 5681 1.131315 GCTGGCTTTCTCGAATGGTTC 59.869 52.381 0.00 0.00 0.00 3.62
2605 5683 0.727398 GGCTTTCTCGAATGGTTCCG 59.273 55.000 0.00 0.00 0.00 4.30
2606 5684 0.727398 GCTTTCTCGAATGGTTCCGG 59.273 55.000 0.00 0.00 0.00 5.14
2610 5688 1.480789 TCTCGAATGGTTCCGGATGA 58.519 50.000 4.15 0.00 0.00 2.92
2622 5700 0.390340 CCGGATGATACTGATGGCCG 60.390 60.000 0.00 0.00 37.20 6.13
2629 5707 0.979665 ATACTGATGGCCGGGATGAG 59.020 55.000 2.18 0.00 0.00 2.90
2640 5718 0.249868 CGGGATGAGGCGCTTGAATA 60.250 55.000 7.64 0.00 0.00 1.75
2646 5724 3.192541 TGAGGCGCTTGAATAATAGCA 57.807 42.857 7.64 0.00 37.23 3.49
2652 5730 3.478516 GCGCTTGAATAATAGCAAACACG 59.521 43.478 0.00 0.00 37.23 4.49
2669 5747 6.074888 GCAAACACGAATAATGATACATTGGC 60.075 38.462 7.16 0.00 0.00 4.52
2693 5771 5.629020 CGCGCATGCAAAAATTAATATAGGT 59.371 36.000 19.57 0.00 42.97 3.08
2697 5777 9.248291 CGCATGCAAAAATTAATATAGGTTTCT 57.752 29.630 19.57 0.00 0.00 2.52
2739 5819 1.619654 TCCCTTGGACAAGCAACATG 58.380 50.000 6.54 0.00 37.11 3.21
2761 5841 8.084073 ACATGTGTAGGTTTTGAATTCTTGATG 58.916 33.333 7.05 0.00 0.00 3.07
2793 5873 3.977427 TCGCATGCTAAGACGACATTAT 58.023 40.909 17.13 0.00 0.00 1.28
2798 5878 6.581166 CGCATGCTAAGACGACATTATACTAA 59.419 38.462 17.13 0.00 0.00 2.24
2802 5882 7.713750 TGCTAAGACGACATTATACTAAGCTT 58.286 34.615 3.48 3.48 0.00 3.74
2836 5916 7.998580 ACTAAATCGACTTTAAGCTAGCTAGT 58.001 34.615 19.70 17.99 0.00 2.57
2837 5917 8.130469 ACTAAATCGACTTTAAGCTAGCTAGTC 58.870 37.037 26.29 26.29 33.58 2.59
2847 5927 7.762588 TTAAGCTAGCTAGTCCATACTTAGG 57.237 40.000 19.70 0.00 37.15 2.69
2858 5938 5.047235 AGTCCATACTTAGGGCAATACGATC 60.047 44.000 0.00 0.00 31.65 3.69
2870 5950 5.465935 GGCAATACGATCAAAAGAAAACCA 58.534 37.500 0.00 0.00 0.00 3.67
2877 5957 4.485163 GATCAAAAGAAAACCATGACGGG 58.515 43.478 0.00 0.00 40.22 5.28
2895 5975 3.068873 ACGGGCTAAAAACAAGCAAATGA 59.931 39.130 0.00 0.00 41.93 2.57
2901 5981 6.410625 GGCTAAAAACAAGCAAATGAAAAACG 59.589 34.615 0.00 0.00 41.93 3.60
2922 6002 6.861065 ACGTTTATTATCATGGTGATGACC 57.139 37.500 0.00 0.00 41.52 4.02
2935 6015 1.495574 TGATGACCCATGCCATGATCA 59.504 47.619 6.18 9.92 0.00 2.92
2938 6018 0.601558 GACCCATGCCATGATCATGC 59.398 55.000 27.24 21.95 39.83 4.06
2946 6026 0.248336 CCATGATCATGCGTGTGTGC 60.248 55.000 27.24 0.00 37.49 4.57
2947 6027 0.730840 CATGATCATGCGTGTGTGCT 59.269 50.000 22.20 0.00 35.36 4.40
2948 6028 1.935199 CATGATCATGCGTGTGTGCTA 59.065 47.619 22.20 0.00 35.36 3.49
2955 6038 2.162319 TGCGTGTGTGCTATTTCAGA 57.838 45.000 0.00 0.00 35.36 3.27
2960 6043 3.120546 CGTGTGTGCTATTTCAGAACCAG 60.121 47.826 0.00 0.00 30.61 4.00
2967 6050 3.625313 GCTATTTCAGAACCAGCTCCTTC 59.375 47.826 7.62 0.00 0.00 3.46
2968 6051 3.795688 ATTTCAGAACCAGCTCCTTCA 57.204 42.857 3.32 0.00 0.00 3.02
2970 6053 2.775911 TCAGAACCAGCTCCTTCATG 57.224 50.000 3.32 0.00 0.00 3.07
2975 6058 5.045651 TCAGAACCAGCTCCTTCATGAATTA 60.046 40.000 8.96 0.00 0.00 1.40
2979 6062 4.225942 ACCAGCTCCTTCATGAATTAGTGA 59.774 41.667 8.96 0.75 0.00 3.41
2992 6075 5.620206 TGAATTAGTGAAGTGTGTGGATGT 58.380 37.500 0.00 0.00 0.00 3.06
3020 6103 8.965819 CATGACTAGCTACATTCTATCTGGTAT 58.034 37.037 0.00 0.00 0.00 2.73
3022 6105 9.674068 TGACTAGCTACATTCTATCTGGTATAG 57.326 37.037 0.00 0.00 0.00 1.31
3029 6112 7.667575 ACATTCTATCTGGTATAGGCTATGG 57.332 40.000 17.24 5.05 0.00 2.74
3034 6117 3.587498 TCTGGTATAGGCTATGGCTGTT 58.413 45.455 17.24 0.00 39.30 3.16
3038 6121 2.734755 ATAGGCTATGGCTGTTTGCA 57.265 45.000 6.15 0.00 45.15 4.08
3042 6125 0.029834 GCTATGGCTGTTTGCATCGG 59.970 55.000 0.00 0.00 45.15 4.18
3060 6143 1.219124 GTTGATGCAGAGGCCGAGA 59.781 57.895 0.00 0.00 40.13 4.04
3066 6149 0.747255 TGCAGAGGCCGAGAGTAATC 59.253 55.000 0.00 0.00 40.13 1.75
3069 6152 2.035632 CAGAGGCCGAGAGTAATCCTT 58.964 52.381 0.00 0.00 0.00 3.36
3070 6153 2.432510 CAGAGGCCGAGAGTAATCCTTT 59.567 50.000 0.00 0.00 0.00 3.11
3175 6261 5.415701 GGCAACCTTCTCTGTATCAAATCAA 59.584 40.000 0.00 0.00 0.00 2.57
3223 6309 4.345257 GCATGATTGGAACTACTAGGGAGA 59.655 45.833 0.00 0.00 0.00 3.71
3224 6310 5.163301 GCATGATTGGAACTACTAGGGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
3225 6311 6.632672 GCATGATTGGAACTACTAGGGAGAAA 60.633 42.308 0.00 0.00 0.00 2.52
3226 6312 7.512992 CATGATTGGAACTACTAGGGAGAAAT 58.487 38.462 0.00 0.00 0.00 2.17
3227 6313 6.889198 TGATTGGAACTACTAGGGAGAAATG 58.111 40.000 0.00 0.00 0.00 2.32
3228 6314 4.755266 TGGAACTACTAGGGAGAAATGC 57.245 45.455 0.00 0.00 0.00 3.56
3229 6315 4.101114 TGGAACTACTAGGGAGAAATGCA 58.899 43.478 0.00 0.00 0.00 3.96
3230 6316 4.721776 TGGAACTACTAGGGAGAAATGCAT 59.278 41.667 0.00 0.00 0.00 3.96
3231 6317 5.059833 GGAACTACTAGGGAGAAATGCATG 58.940 45.833 0.00 0.00 0.00 4.06
3232 6318 4.696479 ACTACTAGGGAGAAATGCATGG 57.304 45.455 0.00 0.00 0.00 3.66
3233 6319 4.298626 ACTACTAGGGAGAAATGCATGGA 58.701 43.478 0.00 0.00 0.00 3.41
3234 6320 4.721776 ACTACTAGGGAGAAATGCATGGAA 59.278 41.667 0.00 0.00 0.00 3.53
3235 6321 4.803329 ACTAGGGAGAAATGCATGGAAT 57.197 40.909 0.00 0.00 0.00 3.01
3236 6322 5.912149 ACTAGGGAGAAATGCATGGAATA 57.088 39.130 0.00 0.00 0.00 1.75
3237 6323 6.266131 ACTAGGGAGAAATGCATGGAATAA 57.734 37.500 0.00 0.00 0.00 1.40
3238 6324 6.856757 ACTAGGGAGAAATGCATGGAATAAT 58.143 36.000 0.00 0.00 0.00 1.28
3239 6325 7.300658 ACTAGGGAGAAATGCATGGAATAATT 58.699 34.615 0.00 0.00 0.00 1.40
3240 6326 8.448008 ACTAGGGAGAAATGCATGGAATAATTA 58.552 33.333 0.00 0.00 0.00 1.40
3241 6327 7.771927 AGGGAGAAATGCATGGAATAATTAG 57.228 36.000 0.00 0.00 0.00 1.73
3242 6328 6.723052 AGGGAGAAATGCATGGAATAATTAGG 59.277 38.462 0.00 0.00 0.00 2.69
3243 6329 6.393171 GGAGAAATGCATGGAATAATTAGGC 58.607 40.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.820744 CCACCCTGCCAATCCCGG 62.821 72.222 0.00 0.00 0.00 5.73
7 8 4.820744 CCCACCCTGCCAATCCCG 62.821 72.222 0.00 0.00 0.00 5.14
8 9 4.463788 CCCCACCCTGCCAATCCC 62.464 72.222 0.00 0.00 0.00 3.85
9 10 4.463788 CCCCCACCCTGCCAATCC 62.464 72.222 0.00 0.00 0.00 3.01
28 29 4.760220 ATTCGCCCCTGACCCCCT 62.760 66.667 0.00 0.00 0.00 4.79
29 30 4.191015 GATTCGCCCCTGACCCCC 62.191 72.222 0.00 0.00 0.00 5.40
30 31 3.090532 AGATTCGCCCCTGACCCC 61.091 66.667 0.00 0.00 0.00 4.95
31 32 2.190578 CAGATTCGCCCCTGACCC 59.809 66.667 0.00 0.00 32.37 4.46
32 33 2.190578 CCAGATTCGCCCCTGACC 59.809 66.667 0.00 0.00 32.37 4.02
33 34 1.153349 GTCCAGATTCGCCCCTGAC 60.153 63.158 0.00 0.00 32.37 3.51
34 35 2.721167 CGTCCAGATTCGCCCCTGA 61.721 63.158 0.00 0.00 32.37 3.86
35 36 2.202932 CGTCCAGATTCGCCCCTG 60.203 66.667 0.00 0.00 0.00 4.45
36 37 2.363795 TCGTCCAGATTCGCCCCT 60.364 61.111 0.00 0.00 0.00 4.79
37 38 2.107141 CTCGTCCAGATTCGCCCC 59.893 66.667 0.00 0.00 0.00 5.80
38 39 1.519455 CACTCGTCCAGATTCGCCC 60.519 63.158 0.00 0.00 0.00 6.13
39 40 1.519455 CCACTCGTCCAGATTCGCC 60.519 63.158 0.00 0.00 0.00 5.54
40 41 2.167861 GCCACTCGTCCAGATTCGC 61.168 63.158 0.00 0.00 0.00 4.70
41 42 0.108615 AAGCCACTCGTCCAGATTCG 60.109 55.000 0.00 0.00 0.00 3.34
42 43 1.066858 TCAAGCCACTCGTCCAGATTC 60.067 52.381 0.00 0.00 0.00 2.52
43 44 0.976641 TCAAGCCACTCGTCCAGATT 59.023 50.000 0.00 0.00 0.00 2.40
44 45 0.247736 GTCAAGCCACTCGTCCAGAT 59.752 55.000 0.00 0.00 0.00 2.90
45 46 0.827925 AGTCAAGCCACTCGTCCAGA 60.828 55.000 0.00 0.00 0.00 3.86
46 47 0.034059 AAGTCAAGCCACTCGTCCAG 59.966 55.000 0.00 0.00 0.00 3.86
47 48 0.468226 AAAGTCAAGCCACTCGTCCA 59.532 50.000 0.00 0.00 0.00 4.02
48 49 1.531578 GAAAAGTCAAGCCACTCGTCC 59.468 52.381 0.00 0.00 0.00 4.79
49 50 1.192534 CGAAAAGTCAAGCCACTCGTC 59.807 52.381 0.00 0.00 0.00 4.20
50 51 1.217882 CGAAAAGTCAAGCCACTCGT 58.782 50.000 0.00 0.00 0.00 4.18
51 52 0.110644 GCGAAAAGTCAAGCCACTCG 60.111 55.000 0.00 0.00 0.00 4.18
52 53 3.755697 GCGAAAAGTCAAGCCACTC 57.244 52.632 0.00 0.00 0.00 3.51
57 58 1.081175 GCCAGGCGAAAAGTCAAGC 60.081 57.895 0.00 0.00 0.00 4.01
58 59 0.239347 CTGCCAGGCGAAAAGTCAAG 59.761 55.000 7.03 0.00 0.00 3.02
59 60 0.465460 ACTGCCAGGCGAAAAGTCAA 60.465 50.000 7.03 0.00 0.00 3.18
60 61 1.148273 ACTGCCAGGCGAAAAGTCA 59.852 52.632 7.03 0.00 0.00 3.41
61 62 1.166531 ACACTGCCAGGCGAAAAGTC 61.167 55.000 7.03 0.00 0.00 3.01
62 63 1.152963 ACACTGCCAGGCGAAAAGT 60.153 52.632 7.03 0.98 0.00 2.66
63 64 1.283793 CACACTGCCAGGCGAAAAG 59.716 57.895 7.03 0.23 0.00 2.27
64 65 2.192861 CCACACTGCCAGGCGAAAA 61.193 57.895 7.03 0.00 0.00 2.29
65 66 2.594303 CCACACTGCCAGGCGAAA 60.594 61.111 7.03 0.00 0.00 3.46
74 75 2.753043 CATCTGGGGCCACACTGC 60.753 66.667 1.54 0.00 0.00 4.40
75 76 1.676635 CACATCTGGGGCCACACTG 60.677 63.158 1.54 7.54 0.00 3.66
76 77 2.759114 CACATCTGGGGCCACACT 59.241 61.111 1.54 0.00 0.00 3.55
77 78 3.064324 GCACATCTGGGGCCACAC 61.064 66.667 1.54 0.00 0.00 3.82
78 79 2.370459 AAAGCACATCTGGGGCCACA 62.370 55.000 7.89 7.89 0.00 4.17
79 80 1.187567 AAAAGCACATCTGGGGCCAC 61.188 55.000 4.39 0.00 0.00 5.01
80 81 0.899717 GAAAAGCACATCTGGGGCCA 60.900 55.000 4.39 0.00 0.00 5.36
81 82 1.607801 GGAAAAGCACATCTGGGGCC 61.608 60.000 0.00 0.00 0.00 5.80
82 83 1.607801 GGGAAAAGCACATCTGGGGC 61.608 60.000 0.00 0.00 0.00 5.80
83 84 0.040204 AGGGAAAAGCACATCTGGGG 59.960 55.000 0.00 0.00 0.00 4.96
84 85 1.547372 CAAGGGAAAAGCACATCTGGG 59.453 52.381 0.00 0.00 0.00 4.45
85 86 1.067354 GCAAGGGAAAAGCACATCTGG 60.067 52.381 0.00 0.00 0.00 3.86
86 87 1.401931 CGCAAGGGAAAAGCACATCTG 60.402 52.381 0.00 0.00 0.00 2.90
87 88 0.883833 CGCAAGGGAAAAGCACATCT 59.116 50.000 0.00 0.00 0.00 2.90
88 89 0.733909 GCGCAAGGGAAAAGCACATC 60.734 55.000 0.30 0.00 38.28 3.06
89 90 1.290009 GCGCAAGGGAAAAGCACAT 59.710 52.632 0.30 0.00 38.28 3.21
90 91 2.727544 GCGCAAGGGAAAAGCACA 59.272 55.556 0.30 0.00 38.28 4.57
91 92 2.049156 GGCGCAAGGGAAAAGCAC 60.049 61.111 10.83 0.00 38.28 4.40
92 93 3.669344 CGGCGCAAGGGAAAAGCA 61.669 61.111 10.83 0.00 38.28 3.91
93 94 4.419939 CCGGCGCAAGGGAAAAGC 62.420 66.667 10.83 0.00 38.28 3.51
94 95 2.671619 TCCGGCGCAAGGGAAAAG 60.672 61.111 19.03 0.00 38.28 2.27
95 96 2.671619 CTCCGGCGCAAGGGAAAA 60.672 61.111 19.03 1.39 38.28 2.29
156 157 4.693525 GACCCGTTTTTGCGCCCG 62.694 66.667 4.18 0.00 0.00 6.13
157 158 4.693525 CGACCCGTTTTTGCGCCC 62.694 66.667 4.18 0.00 0.00 6.13
158 159 3.588891 CTCGACCCGTTTTTGCGCC 62.589 63.158 4.18 0.00 0.00 6.53
159 160 2.127383 CTCGACCCGTTTTTGCGC 60.127 61.111 0.00 0.00 0.00 6.09
160 161 1.203313 GACTCGACCCGTTTTTGCG 59.797 57.895 0.00 0.00 0.00 4.85
161 162 1.203313 CGACTCGACCCGTTTTTGC 59.797 57.895 0.00 0.00 0.00 3.68
162 163 1.857364 CCGACTCGACCCGTTTTTG 59.143 57.895 0.00 0.00 0.00 2.44
163 164 1.957695 GCCGACTCGACCCGTTTTT 60.958 57.895 0.00 0.00 0.00 1.94
164 165 2.356673 GCCGACTCGACCCGTTTT 60.357 61.111 0.00 0.00 0.00 2.43
165 166 3.569049 CTGCCGACTCGACCCGTTT 62.569 63.158 0.00 0.00 0.00 3.60
166 167 4.052229 CTGCCGACTCGACCCGTT 62.052 66.667 0.00 0.00 0.00 4.44
168 169 2.558554 AATTCTGCCGACTCGACCCG 62.559 60.000 0.00 0.00 0.00 5.28
169 170 0.806492 GAATTCTGCCGACTCGACCC 60.806 60.000 0.00 0.00 0.00 4.46
170 171 1.140407 CGAATTCTGCCGACTCGACC 61.140 60.000 3.52 0.00 30.22 4.79
171 172 1.140407 CCGAATTCTGCCGACTCGAC 61.140 60.000 3.52 0.00 30.22 4.20
172 173 1.138883 CCGAATTCTGCCGACTCGA 59.861 57.895 3.52 0.00 30.22 4.04
173 174 2.517450 GCCGAATTCTGCCGACTCG 61.517 63.158 10.49 2.82 0.00 4.18
174 175 2.517450 CGCCGAATTCTGCCGACTC 61.517 63.158 15.20 0.00 0.00 3.36
175 176 2.509336 CGCCGAATTCTGCCGACT 60.509 61.111 15.20 0.00 0.00 4.18
176 177 2.799540 GACGCCGAATTCTGCCGAC 61.800 63.158 15.20 7.94 0.00 4.79
177 178 2.501223 AAGACGCCGAATTCTGCCGA 62.501 55.000 15.20 0.00 0.00 5.54
178 179 2.100631 AAGACGCCGAATTCTGCCG 61.101 57.895 15.20 12.51 0.00 5.69
179 180 1.425428 CAAGACGCCGAATTCTGCC 59.575 57.895 15.20 3.53 0.00 4.85
180 181 1.425428 CCAAGACGCCGAATTCTGC 59.575 57.895 11.48 11.48 0.00 4.26
181 182 1.369091 CCCCAAGACGCCGAATTCTG 61.369 60.000 3.52 0.00 0.00 3.02
182 183 1.078426 CCCCAAGACGCCGAATTCT 60.078 57.895 3.52 0.00 0.00 2.40
183 184 2.112815 CCCCCAAGACGCCGAATTC 61.113 63.158 0.00 0.00 0.00 2.17
184 185 2.045340 CCCCCAAGACGCCGAATT 60.045 61.111 0.00 0.00 0.00 2.17
185 186 4.796495 GCCCCCAAGACGCCGAAT 62.796 66.667 0.00 0.00 0.00 3.34
236 237 0.826256 GGTCCTTCCCAGGCGTTTTT 60.826 55.000 0.00 0.00 40.58 1.94
237 238 1.228459 GGTCCTTCCCAGGCGTTTT 60.228 57.895 0.00 0.00 40.58 2.43
238 239 2.154074 AGGTCCTTCCCAGGCGTTT 61.154 57.895 0.00 0.00 40.58 3.60
239 240 2.529389 AGGTCCTTCCCAGGCGTT 60.529 61.111 0.00 0.00 40.58 4.84
240 241 3.322466 CAGGTCCTTCCCAGGCGT 61.322 66.667 0.00 0.00 40.58 5.68
241 242 4.785453 GCAGGTCCTTCCCAGGCG 62.785 72.222 0.00 0.00 40.58 5.52
242 243 3.334054 AGCAGGTCCTTCCCAGGC 61.334 66.667 0.00 0.00 40.58 4.85
243 244 1.908340 CTCAGCAGGTCCTTCCCAGG 61.908 65.000 0.00 0.00 42.50 4.45
244 245 1.601171 CTCAGCAGGTCCTTCCCAG 59.399 63.158 0.00 0.00 36.75 4.45
245 246 1.920325 CCTCAGCAGGTCCTTCCCA 60.920 63.158 0.00 0.00 34.60 4.37
246 247 2.674220 CCCTCAGCAGGTCCTTCCC 61.674 68.421 0.00 0.00 38.30 3.97
247 248 1.920835 ACCCTCAGCAGGTCCTTCC 60.921 63.158 0.00 0.00 38.30 3.46
248 249 1.298014 CACCCTCAGCAGGTCCTTC 59.702 63.158 0.00 0.00 38.30 3.46
249 250 2.900106 GCACCCTCAGCAGGTCCTT 61.900 63.158 0.00 0.00 38.30 3.36
250 251 3.325753 GCACCCTCAGCAGGTCCT 61.326 66.667 0.00 0.00 38.30 3.85
251 252 4.767255 CGCACCCTCAGCAGGTCC 62.767 72.222 0.00 0.00 38.30 4.46
252 253 4.767255 CCGCACCCTCAGCAGGTC 62.767 72.222 0.00 0.00 38.30 3.85
258 259 4.463879 CTCCAGCCGCACCCTCAG 62.464 72.222 0.00 0.00 0.00 3.35
260 261 3.474570 ATCTCCAGCCGCACCCTC 61.475 66.667 0.00 0.00 0.00 4.30
261 262 3.790437 CATCTCCAGCCGCACCCT 61.790 66.667 0.00 0.00 0.00 4.34
263 264 4.479993 AGCATCTCCAGCCGCACC 62.480 66.667 0.00 0.00 0.00 5.01
264 265 2.894387 GAGCATCTCCAGCCGCAC 60.894 66.667 0.00 0.00 0.00 5.34
273 274 8.800332 ACAATTTTATGGATATTGGAGCATCTC 58.200 33.333 0.00 0.00 34.40 2.75
274 275 8.716674 ACAATTTTATGGATATTGGAGCATCT 57.283 30.769 0.00 0.00 34.40 2.90
275 276 8.800332 AGACAATTTTATGGATATTGGAGCATC 58.200 33.333 0.00 0.00 34.40 3.91
276 277 8.716674 AGACAATTTTATGGATATTGGAGCAT 57.283 30.769 0.00 0.00 34.40 3.79
277 278 8.415553 CAAGACAATTTTATGGATATTGGAGCA 58.584 33.333 0.00 0.00 34.40 4.26
278 279 7.383300 GCAAGACAATTTTATGGATATTGGAGC 59.617 37.037 0.00 0.00 34.40 4.70
279 280 8.415553 TGCAAGACAATTTTATGGATATTGGAG 58.584 33.333 0.00 0.00 34.40 3.86
280 281 8.303780 TGCAAGACAATTTTATGGATATTGGA 57.696 30.769 0.00 0.00 34.40 3.53
281 282 8.945481 TTGCAAGACAATTTTATGGATATTGG 57.055 30.769 0.00 0.00 34.40 3.16
310 311 0.179127 CATGTCATCGACGCCTGTCT 60.179 55.000 0.00 0.00 43.21 3.41
314 315 1.141881 GTCCATGTCATCGACGCCT 59.858 57.895 0.00 0.00 34.95 5.52
316 317 0.872021 GAGGTCCATGTCATCGACGC 60.872 60.000 4.73 0.00 34.95 5.19
317 318 0.455815 TGAGGTCCATGTCATCGACG 59.544 55.000 4.73 0.00 34.95 5.12
318 319 2.477825 CATGAGGTCCATGTCATCGAC 58.522 52.381 2.19 2.19 45.83 4.20
319 320 2.896745 CATGAGGTCCATGTCATCGA 57.103 50.000 0.00 0.00 45.83 3.59
327 328 1.779092 CTTGGGGATCATGAGGTCCAT 59.221 52.381 15.64 0.00 36.19 3.41
367 368 5.587844 AGCTAATCAGGCACTAAAGACAATG 59.412 40.000 0.00 0.00 36.02 2.82
368 369 5.749462 AGCTAATCAGGCACTAAAGACAAT 58.251 37.500 0.00 0.00 36.02 2.71
376 377 7.604164 GCAAAATATAGAGCTAATCAGGCACTA 59.396 37.037 0.00 0.00 36.02 2.74
379 380 6.537355 AGCAAAATATAGAGCTAATCAGGCA 58.463 36.000 0.00 0.00 35.19 4.75
439 440 9.174166 ACGTCCTAAAAAGTTAATGCTCAATAT 57.826 29.630 0.00 0.00 0.00 1.28
440 441 8.447833 CACGTCCTAAAAAGTTAATGCTCAATA 58.552 33.333 0.00 0.00 0.00 1.90
441 442 7.305474 CACGTCCTAAAAAGTTAATGCTCAAT 58.695 34.615 0.00 0.00 0.00 2.57
442 443 6.293735 CCACGTCCTAAAAAGTTAATGCTCAA 60.294 38.462 0.00 0.00 0.00 3.02
443 444 5.180492 CCACGTCCTAAAAAGTTAATGCTCA 59.820 40.000 0.00 0.00 0.00 4.26
457 2095 1.477553 AATCTACCGCCACGTCCTAA 58.522 50.000 0.00 0.00 0.00 2.69
484 2122 5.192927 ACTCATGCATATTCGAGGGAAAAA 58.807 37.500 14.31 0.00 35.40 1.94
485 2123 4.780815 ACTCATGCATATTCGAGGGAAAA 58.219 39.130 14.31 0.00 35.40 2.29
486 2124 4.422073 ACTCATGCATATTCGAGGGAAA 57.578 40.909 14.31 0.00 35.40 3.13
487 2125 5.482006 CATACTCATGCATATTCGAGGGAA 58.518 41.667 14.31 2.73 36.41 3.97
488 2126 5.077134 CATACTCATGCATATTCGAGGGA 57.923 43.478 14.31 4.55 0.00 4.20
506 2144 8.986847 GCACTCCTTGATATATGATATGCATAC 58.013 37.037 8.99 4.07 42.01 2.39
507 2145 8.152898 GGCACTCCTTGATATATGATATGCATA 58.847 37.037 9.27 9.27 43.28 3.14
508 2146 6.996879 GGCACTCCTTGATATATGATATGCAT 59.003 38.462 3.79 3.79 41.08 3.96
509 2147 6.157471 AGGCACTCCTTGATATATGATATGCA 59.843 38.462 0.00 0.00 40.66 3.96
510 2148 6.590068 AGGCACTCCTTGATATATGATATGC 58.410 40.000 0.00 0.00 40.66 3.14
529 2167 1.873698 TAAAACTGTGACGGAGGCAC 58.126 50.000 0.00 0.00 36.81 5.01
530 2168 2.851263 ATAAAACTGTGACGGAGGCA 57.149 45.000 0.00 0.00 0.00 4.75
531 2169 5.123344 ACATTTATAAAACTGTGACGGAGGC 59.877 40.000 1.21 0.00 28.26 4.70
532 2170 6.594159 AGACATTTATAAAACTGTGACGGAGG 59.406 38.462 8.78 0.00 29.42 4.30
533 2171 7.596749 AGACATTTATAAAACTGTGACGGAG 57.403 36.000 8.78 0.00 29.42 4.63
534 2172 7.972832 AAGACATTTATAAAACTGTGACGGA 57.027 32.000 8.78 0.00 29.42 4.69
550 2188 9.654663 GAGGAGTAGTGTTGTATTAAGACATTT 57.345 33.333 3.34 0.00 0.00 2.32
551 2189 8.812972 TGAGGAGTAGTGTTGTATTAAGACATT 58.187 33.333 3.34 0.00 0.00 2.71
552 2190 8.251721 GTGAGGAGTAGTGTTGTATTAAGACAT 58.748 37.037 3.34 0.00 0.00 3.06
553 2191 7.450634 AGTGAGGAGTAGTGTTGTATTAAGACA 59.549 37.037 0.00 0.00 0.00 3.41
554 2192 7.828712 AGTGAGGAGTAGTGTTGTATTAAGAC 58.171 38.462 0.00 0.00 0.00 3.01
555 2193 8.954350 GTAGTGAGGAGTAGTGTTGTATTAAGA 58.046 37.037 0.00 0.00 0.00 2.10
556 2194 8.958506 AGTAGTGAGGAGTAGTGTTGTATTAAG 58.041 37.037 0.00 0.00 0.00 1.85
557 2195 8.874744 AGTAGTGAGGAGTAGTGTTGTATTAA 57.125 34.615 0.00 0.00 0.00 1.40
558 2196 7.279536 CGAGTAGTGAGGAGTAGTGTTGTATTA 59.720 40.741 0.00 0.00 0.00 0.98
559 2197 6.093771 CGAGTAGTGAGGAGTAGTGTTGTATT 59.906 42.308 0.00 0.00 0.00 1.89
560 2198 5.585445 CGAGTAGTGAGGAGTAGTGTTGTAT 59.415 44.000 0.00 0.00 0.00 2.29
561 2199 4.934001 CGAGTAGTGAGGAGTAGTGTTGTA 59.066 45.833 0.00 0.00 0.00 2.41
562 2200 3.752222 CGAGTAGTGAGGAGTAGTGTTGT 59.248 47.826 0.00 0.00 0.00 3.32
563 2201 3.426426 GCGAGTAGTGAGGAGTAGTGTTG 60.426 52.174 0.00 0.00 0.00 3.33
564 2202 2.748532 GCGAGTAGTGAGGAGTAGTGTT 59.251 50.000 0.00 0.00 0.00 3.32
565 2203 2.358015 GCGAGTAGTGAGGAGTAGTGT 58.642 52.381 0.00 0.00 0.00 3.55
566 2204 1.671845 GGCGAGTAGTGAGGAGTAGTG 59.328 57.143 0.00 0.00 0.00 2.74
567 2205 1.408544 GGGCGAGTAGTGAGGAGTAGT 60.409 57.143 0.00 0.00 0.00 2.73
568 2206 1.310904 GGGCGAGTAGTGAGGAGTAG 58.689 60.000 0.00 0.00 0.00 2.57
569 2207 0.622136 TGGGCGAGTAGTGAGGAGTA 59.378 55.000 0.00 0.00 0.00 2.59
570 2208 0.966370 GTGGGCGAGTAGTGAGGAGT 60.966 60.000 0.00 0.00 0.00 3.85
571 2209 1.668101 GGTGGGCGAGTAGTGAGGAG 61.668 65.000 0.00 0.00 0.00 3.69
572 2210 1.681327 GGTGGGCGAGTAGTGAGGA 60.681 63.158 0.00 0.00 0.00 3.71
573 2211 1.668101 GAGGTGGGCGAGTAGTGAGG 61.668 65.000 0.00 0.00 0.00 3.86
574 2212 0.681564 AGAGGTGGGCGAGTAGTGAG 60.682 60.000 0.00 0.00 0.00 3.51
575 2213 0.680280 GAGAGGTGGGCGAGTAGTGA 60.680 60.000 0.00 0.00 0.00 3.41
576 2214 0.681564 AGAGAGGTGGGCGAGTAGTG 60.682 60.000 0.00 0.00 0.00 2.74
577 2215 0.917533 TAGAGAGGTGGGCGAGTAGT 59.082 55.000 0.00 0.00 0.00 2.73
578 2216 2.054232 TTAGAGAGGTGGGCGAGTAG 57.946 55.000 0.00 0.00 0.00 2.57
579 2217 2.175069 AGATTAGAGAGGTGGGCGAGTA 59.825 50.000 0.00 0.00 0.00 2.59
580 2218 1.063567 AGATTAGAGAGGTGGGCGAGT 60.064 52.381 0.00 0.00 0.00 4.18
581 2219 1.698506 AGATTAGAGAGGTGGGCGAG 58.301 55.000 0.00 0.00 0.00 5.03
582 2220 2.092049 TGTAGATTAGAGAGGTGGGCGA 60.092 50.000 0.00 0.00 0.00 5.54
583 2221 2.294791 CTGTAGATTAGAGAGGTGGGCG 59.705 54.545 0.00 0.00 0.00 6.13
584 2222 3.567397 TCTGTAGATTAGAGAGGTGGGC 58.433 50.000 0.00 0.00 0.00 5.36
585 2223 5.450453 TCTTCTGTAGATTAGAGAGGTGGG 58.550 45.833 0.00 0.00 29.15 4.61
586 2224 6.040391 CCTTCTTCTGTAGATTAGAGAGGTGG 59.960 46.154 0.00 0.00 31.54 4.61
587 2225 6.040391 CCCTTCTTCTGTAGATTAGAGAGGTG 59.960 46.154 0.00 0.00 31.54 4.00
588 2226 6.133356 CCCTTCTTCTGTAGATTAGAGAGGT 58.867 44.000 0.00 0.00 31.54 3.85
589 2227 5.538433 CCCCTTCTTCTGTAGATTAGAGAGG 59.462 48.000 0.00 0.00 31.54 3.69
590 2228 6.133356 ACCCCTTCTTCTGTAGATTAGAGAG 58.867 44.000 0.00 0.00 31.54 3.20
591 2229 6.093617 ACCCCTTCTTCTGTAGATTAGAGA 57.906 41.667 0.00 0.00 31.54 3.10
592 2230 5.894393 TGACCCCTTCTTCTGTAGATTAGAG 59.106 44.000 0.00 0.00 31.54 2.43
593 2231 5.838955 TGACCCCTTCTTCTGTAGATTAGA 58.161 41.667 0.00 0.00 31.54 2.10
594 2232 6.155393 AGTTGACCCCTTCTTCTGTAGATTAG 59.845 42.308 0.00 0.00 31.54 1.73
595 2233 6.023603 AGTTGACCCCTTCTTCTGTAGATTA 58.976 40.000 0.00 0.00 31.54 1.75
596 2234 4.846940 AGTTGACCCCTTCTTCTGTAGATT 59.153 41.667 0.00 0.00 31.54 2.40
597 2235 4.430441 AGTTGACCCCTTCTTCTGTAGAT 58.570 43.478 0.00 0.00 31.54 1.98
598 2236 3.858135 AGTTGACCCCTTCTTCTGTAGA 58.142 45.455 0.00 0.00 0.00 2.59
599 2237 4.625607 AAGTTGACCCCTTCTTCTGTAG 57.374 45.455 0.00 0.00 0.00 2.74
600 2238 5.132144 AGAAAAGTTGACCCCTTCTTCTGTA 59.868 40.000 0.00 0.00 0.00 2.74
601 2239 3.953542 AAAGTTGACCCCTTCTTCTGT 57.046 42.857 0.00 0.00 0.00 3.41
602 2240 4.464947 AGAAAAGTTGACCCCTTCTTCTG 58.535 43.478 0.00 0.00 0.00 3.02
603 2241 4.797912 AGAAAAGTTGACCCCTTCTTCT 57.202 40.909 0.00 0.00 0.00 2.85
604 2242 6.296803 TCTAAGAAAAGTTGACCCCTTCTTC 58.703 40.000 2.10 0.00 37.48 2.87
605 2243 6.262056 TCTAAGAAAAGTTGACCCCTTCTT 57.738 37.500 4.02 4.02 39.18 2.52
606 2244 5.906772 TCTAAGAAAAGTTGACCCCTTCT 57.093 39.130 0.00 0.00 0.00 2.85
607 2245 5.049612 CGTTCTAAGAAAAGTTGACCCCTTC 60.050 44.000 0.00 0.00 0.00 3.46
608 2246 4.820173 CGTTCTAAGAAAAGTTGACCCCTT 59.180 41.667 0.00 0.00 0.00 3.95
609 2247 4.141551 ACGTTCTAAGAAAAGTTGACCCCT 60.142 41.667 0.00 0.00 0.00 4.79
610 2248 4.024302 CACGTTCTAAGAAAAGTTGACCCC 60.024 45.833 0.00 0.00 0.00 4.95
611 2249 4.812626 TCACGTTCTAAGAAAAGTTGACCC 59.187 41.667 0.00 0.00 0.00 4.46
612 2250 5.751990 TCTCACGTTCTAAGAAAAGTTGACC 59.248 40.000 0.00 0.00 0.00 4.02
613 2251 6.823678 TCTCACGTTCTAAGAAAAGTTGAC 57.176 37.500 0.00 0.00 0.00 3.18
614 2252 7.837202 TTTCTCACGTTCTAAGAAAAGTTGA 57.163 32.000 8.80 0.00 36.39 3.18
615 2253 9.503427 AAATTTCTCACGTTCTAAGAAAAGTTG 57.497 29.630 13.14 0.00 41.06 3.16
617 2255 9.503427 CAAAATTTCTCACGTTCTAAGAAAAGT 57.497 29.630 13.14 5.40 41.06 2.66
618 2256 9.503427 ACAAAATTTCTCACGTTCTAAGAAAAG 57.497 29.630 13.14 8.41 41.06 2.27
619 2257 9.284594 CACAAAATTTCTCACGTTCTAAGAAAA 57.715 29.630 13.14 1.67 41.06 2.29
620 2258 8.455682 ACACAAAATTTCTCACGTTCTAAGAAA 58.544 29.630 12.07 12.07 41.71 2.52
621 2259 7.981142 ACACAAAATTTCTCACGTTCTAAGAA 58.019 30.769 0.00 0.00 0.00 2.52
622 2260 7.548196 ACACAAAATTTCTCACGTTCTAAGA 57.452 32.000 0.00 0.00 0.00 2.10
630 2268 6.239945 CAAAACCAACACAAAATTTCTCACG 58.760 36.000 0.00 0.00 0.00 4.35
642 2280 1.429825 CCGTCGCAAAACCAACACA 59.570 52.632 0.00 0.00 0.00 3.72
657 2295 1.463674 GGCACATCTCAAAATCCCGT 58.536 50.000 0.00 0.00 0.00 5.28
732 2372 2.463876 GCAGGAAACAGTGTCAAAAGC 58.536 47.619 0.00 0.00 0.00 3.51
733 2373 2.426738 TGGCAGGAAACAGTGTCAAAAG 59.573 45.455 0.00 0.00 0.00 2.27
734 2374 2.451490 TGGCAGGAAACAGTGTCAAAA 58.549 42.857 0.00 0.00 0.00 2.44
735 2375 2.136298 TGGCAGGAAACAGTGTCAAA 57.864 45.000 0.00 0.00 0.00 2.69
736 2376 2.363306 ATGGCAGGAAACAGTGTCAA 57.637 45.000 0.00 0.00 30.67 3.18
737 2377 3.719268 ATATGGCAGGAAACAGTGTCA 57.281 42.857 0.00 0.00 31.64 3.58
738 2378 4.218417 ACAAATATGGCAGGAAACAGTGTC 59.782 41.667 0.00 0.00 0.00 3.67
739 2379 4.151883 ACAAATATGGCAGGAAACAGTGT 58.848 39.130 0.00 0.00 0.00 3.55
740 2380 4.789012 ACAAATATGGCAGGAAACAGTG 57.211 40.909 0.00 0.00 0.00 3.66
741 2381 5.815581 TCTACAAATATGGCAGGAAACAGT 58.184 37.500 0.00 0.00 0.00 3.55
742 2382 6.949352 ATCTACAAATATGGCAGGAAACAG 57.051 37.500 0.00 0.00 0.00 3.16
743 2383 7.665559 GGATATCTACAAATATGGCAGGAAACA 59.334 37.037 2.05 0.00 0.00 2.83
759 2399 4.957954 ACGTTTACACAGGGGATATCTACA 59.042 41.667 2.05 0.00 0.00 2.74
770 2410 0.865769 GTGCCTCACGTTTACACAGG 59.134 55.000 0.00 0.00 0.00 4.00
813 2453 3.877559 TCTTGATTCATCCATCGCTGTT 58.122 40.909 0.00 0.00 0.00 3.16
823 2463 5.964958 TGTGTTTCCCTTCTTGATTCATC 57.035 39.130 0.00 0.00 0.00 2.92
864 3896 1.209504 TGCTTATGTAGTGGTCTGGGC 59.790 52.381 0.00 0.00 0.00 5.36
865 3897 2.420129 GGTGCTTATGTAGTGGTCTGGG 60.420 54.545 0.00 0.00 0.00 4.45
866 3898 2.420129 GGGTGCTTATGTAGTGGTCTGG 60.420 54.545 0.00 0.00 0.00 3.86
867 3899 2.501723 AGGGTGCTTATGTAGTGGTCTG 59.498 50.000 0.00 0.00 0.00 3.51
868 3900 2.834113 AGGGTGCTTATGTAGTGGTCT 58.166 47.619 0.00 0.00 0.00 3.85
869 3901 4.957684 ATAGGGTGCTTATGTAGTGGTC 57.042 45.455 0.00 0.00 0.00 4.02
895 3963 0.881118 GCTTCTGGAATTGTTGGCGA 59.119 50.000 0.00 0.00 0.00 5.54
918 3986 1.788229 TTAGAGATGGGATGGACGCA 58.212 50.000 0.00 0.00 45.06 5.24
919 3987 2.354203 GGATTAGAGATGGGATGGACGC 60.354 54.545 0.00 0.00 0.00 5.19
942 4010 3.046968 TCGCGCTCTACAGATATCTCT 57.953 47.619 5.56 0.00 0.00 3.10
943 4011 3.742786 CTTCGCGCTCTACAGATATCTC 58.257 50.000 5.56 0.00 0.00 2.75
944 4012 2.095466 GCTTCGCGCTCTACAGATATCT 60.095 50.000 5.56 0.00 35.14 1.98
945 4013 2.246789 GCTTCGCGCTCTACAGATATC 58.753 52.381 5.56 0.00 35.14 1.63
946 4014 1.068194 GGCTTCGCGCTCTACAGATAT 60.068 52.381 5.56 0.00 39.13 1.63
947 4015 0.311165 GGCTTCGCGCTCTACAGATA 59.689 55.000 5.56 0.00 39.13 1.98
948 4016 1.066587 GGCTTCGCGCTCTACAGAT 59.933 57.895 5.56 0.00 39.13 2.90
949 4017 1.994507 GAGGCTTCGCGCTCTACAGA 61.995 60.000 5.56 0.00 39.13 3.41
953 4021 1.360551 GATGAGGCTTCGCGCTCTA 59.639 57.895 5.56 0.00 39.13 2.43
966 4034 2.939103 CTGGAAGGTTTTAGGCGATGAG 59.061 50.000 0.00 0.00 0.00 2.90
970 4038 0.322187 GGCTGGAAGGTTTTAGGCGA 60.322 55.000 0.00 0.00 0.00 5.54
977 4045 0.538287 GAGTGCTGGCTGGAAGGTTT 60.538 55.000 0.00 0.00 0.00 3.27
984 4052 1.376942 CTTCAGGAGTGCTGGCTGG 60.377 63.158 12.15 0.00 0.00 4.85
1006 4074 8.982723 TGATGCTCTAGTTTCTACCTATTCTTT 58.017 33.333 0.00 0.00 0.00 2.52
1007 4075 8.540507 TGATGCTCTAGTTTCTACCTATTCTT 57.459 34.615 0.00 0.00 0.00 2.52
1034 4106 1.838077 GTGGTGGATACTAGCTGGGTT 59.162 52.381 0.85 0.00 37.61 4.11
1044 4116 1.470098 AGTGACGTACGTGGTGGATAC 59.530 52.381 28.16 9.14 0.00 2.24
1060 4132 0.321919 GCCATTCCAGTGAGCAGTGA 60.322 55.000 6.87 0.00 33.67 3.41
1061 4133 1.642037 CGCCATTCCAGTGAGCAGTG 61.642 60.000 0.00 0.00 0.00 3.66
1062 4134 1.376424 CGCCATTCCAGTGAGCAGT 60.376 57.895 0.00 0.00 0.00 4.40
1063 4135 1.364626 GACGCCATTCCAGTGAGCAG 61.365 60.000 0.00 0.00 0.00 4.24
1064 4136 1.375908 GACGCCATTCCAGTGAGCA 60.376 57.895 0.00 0.00 0.00 4.26
1065 4137 2.109126 GGACGCCATTCCAGTGAGC 61.109 63.158 0.00 0.00 35.49 4.26
1066 4138 0.460987 GAGGACGCCATTCCAGTGAG 60.461 60.000 0.00 0.00 38.25 3.51
1120 4192 1.067776 GTCGTCGGTGTCAAGGAAGAT 60.068 52.381 0.00 0.00 0.00 2.40
1128 4200 0.601046 AGTCTACGTCGTCGGTGTCA 60.601 55.000 0.00 0.00 41.85 3.58
1297 4369 0.318762 GTGTTGAGGAAGAGGCGTCT 59.681 55.000 2.32 2.32 32.81 4.18
1353 4425 2.367486 ACGAAGTAGTAGTCCTGGAGC 58.633 52.381 0.00 0.00 41.94 4.70
1422 4494 3.541996 AGATTCATGACGCATACCACA 57.458 42.857 0.00 0.00 0.00 4.17
1423 4495 4.882671 AAAGATTCATGACGCATACCAC 57.117 40.909 0.00 0.00 0.00 4.16
1470 4542 4.424711 GAGTTGGGGATGGGCGCA 62.425 66.667 10.83 5.70 0.00 6.09
1572 4644 0.320771 AGTCAAGCTTGGCCGTGTAG 60.321 55.000 26.87 0.00 31.90 2.74
1591 4663 0.250684 TCCACCGCAAATTGCTCAGA 60.251 50.000 16.42 4.75 42.25 3.27
1667 4739 0.676736 GAGACCACCGATCATCTCCC 59.323 60.000 0.00 0.00 32.97 4.30
1841 4913 1.967535 CTTCTCACAGGCTCGACCA 59.032 57.895 6.78 0.00 43.14 4.02
1908 4980 2.943036 TGGTAGGGAACTTGTTGGTC 57.057 50.000 0.00 0.00 43.67 4.02
1921 4993 1.094785 CGGTTGCCTTCAATGGTAGG 58.905 55.000 0.00 0.00 34.29 3.18
1941 5013 2.288825 TGCTCCACCAAAGTAGAAGACG 60.289 50.000 0.00 0.00 0.00 4.18
1961 5033 0.370273 GCCGTTGTCGTATTGCTCTG 59.630 55.000 0.00 0.00 35.01 3.35
1968 5040 2.385091 GCCAACGCCGTTGTCGTAT 61.385 57.895 26.35 0.00 41.41 3.06
1977 5049 2.508439 ATGTAGACGCCAACGCCG 60.508 61.111 0.00 0.00 45.53 6.46
1981 5053 1.389106 GTCGAACATGTAGACGCCAAC 59.611 52.381 15.61 6.60 0.00 3.77
1987 5059 4.445452 TGGTAAGGTCGAACATGTAGAC 57.555 45.455 20.08 20.08 0.00 2.59
2136 5208 6.093495 ACAATCTTGGTTATGTGGTTCATACG 59.907 38.462 0.00 0.00 38.55 3.06
2146 5218 4.081531 CCATTGCCACAATCTTGGTTATGT 60.082 41.667 0.00 0.00 39.09 2.29
2154 5226 2.917713 TACCCCATTGCCACAATCTT 57.082 45.000 0.00 0.00 0.00 2.40
2179 5251 8.347035 CCCGACGTTTACAATATTATCCAATTT 58.653 33.333 0.00 0.00 0.00 1.82
2180 5252 7.499895 ACCCGACGTTTACAATATTATCCAATT 59.500 33.333 0.00 0.00 0.00 2.32
2182 5254 6.258287 CACCCGACGTTTACAATATTATCCAA 59.742 38.462 0.00 0.00 0.00 3.53
2185 5257 6.476380 TCACACCCGACGTTTACAATATTATC 59.524 38.462 0.00 0.00 0.00 1.75
2203 5275 3.609853 TGTAGCTCAATCAATCACACCC 58.390 45.455 0.00 0.00 0.00 4.61
2222 5294 8.154203 CCCCCAAAAACAATAATACTTTCTTGT 58.846 33.333 0.00 0.00 34.64 3.16
2230 5302 8.315482 ACACAATACCCCCAAAAACAATAATAC 58.685 33.333 0.00 0.00 0.00 1.89
2236 5308 6.749036 AATACACAATACCCCCAAAAACAA 57.251 33.333 0.00 0.00 0.00 2.83
2244 5318 7.390823 ACAAATTTGAAATACACAATACCCCC 58.609 34.615 24.64 0.00 0.00 5.40
2255 5329 8.293114 ACATTCAACCGACAAATTTGAAATAC 57.707 30.769 24.64 8.98 41.35 1.89
2256 5330 8.879342 AACATTCAACCGACAAATTTGAAATA 57.121 26.923 24.64 0.87 41.35 1.40
2270 5344 3.517602 TGATCGGTAGAACATTCAACCG 58.482 45.455 6.42 6.42 41.53 4.44
2271 5345 4.504858 ACTGATCGGTAGAACATTCAACC 58.495 43.478 5.05 0.00 0.00 3.77
2311 5385 3.489355 ACTTGCAACTGACATGGATGAA 58.511 40.909 0.00 0.00 0.00 2.57
2316 5390 3.441496 ACAAACTTGCAACTGACATGG 57.559 42.857 0.00 0.00 0.00 3.66
2353 5427 3.625764 CCAAAGGAAAGAACAACTCGACA 59.374 43.478 0.00 0.00 0.00 4.35
2385 5459 8.492673 TCTTGCTTGGTTGTTCTACTTATATG 57.507 34.615 0.00 0.00 0.00 1.78
2386 5460 8.540388 TCTCTTGCTTGGTTGTTCTACTTATAT 58.460 33.333 0.00 0.00 0.00 0.86
2387 5461 7.817962 GTCTCTTGCTTGGTTGTTCTACTTATA 59.182 37.037 0.00 0.00 0.00 0.98
2406 5483 8.873215 AACACTATTCCGTAATATGTCTCTTG 57.127 34.615 0.00 0.00 0.00 3.02
2408 5485 9.886132 AAAAACACTATTCCGTAATATGTCTCT 57.114 29.630 0.00 0.00 0.00 3.10
2438 5515 2.305927 AGGCCTAGTAAAGAAGCAGCAA 59.694 45.455 1.29 0.00 0.00 3.91
2439 5516 1.909302 AGGCCTAGTAAAGAAGCAGCA 59.091 47.619 1.29 0.00 0.00 4.41
2440 5517 2.093447 TCAGGCCTAGTAAAGAAGCAGC 60.093 50.000 3.98 0.00 0.00 5.25
2441 5518 3.895232 TCAGGCCTAGTAAAGAAGCAG 57.105 47.619 3.98 0.00 0.00 4.24
2442 5519 4.844349 AATCAGGCCTAGTAAAGAAGCA 57.156 40.909 3.98 0.00 0.00 3.91
2443 5520 4.336713 CCAAATCAGGCCTAGTAAAGAAGC 59.663 45.833 3.98 0.00 0.00 3.86
2445 5522 5.497474 GACCAAATCAGGCCTAGTAAAGAA 58.503 41.667 3.98 0.00 0.00 2.52
2446 5523 4.080526 GGACCAAATCAGGCCTAGTAAAGA 60.081 45.833 3.98 0.00 0.00 2.52
2485 5562 1.952296 GATTGTGAGGCATGGATGGAC 59.048 52.381 0.00 0.00 0.00 4.02
2489 5566 1.807755 CGACGATTGTGAGGCATGGAT 60.808 52.381 0.00 0.00 0.00 3.41
2494 5571 1.132453 CTACTCGACGATTGTGAGGCA 59.868 52.381 0.00 4.44 34.03 4.75
2502 5579 5.312120 ACTGATTGTTCTACTCGACGATT 57.688 39.130 0.00 0.00 0.00 3.34
2511 5588 8.149973 TCAACAAGGTTTACTGATTGTTCTAC 57.850 34.615 0.00 0.00 42.35 2.59
2520 5597 4.141287 CCACCATCAACAAGGTTTACTGA 58.859 43.478 0.00 0.00 35.52 3.41
2522 5599 3.117284 ACCCACCATCAACAAGGTTTACT 60.117 43.478 0.00 0.00 35.52 2.24
2535 5613 3.053619 AGGTTAATGAGGAACCCACCATC 60.054 47.826 0.96 0.00 46.46 3.51
2540 5618 5.285401 TCATAGAGGTTAATGAGGAACCCA 58.715 41.667 0.96 0.00 46.46 4.51
2541 5619 5.888982 TCATAGAGGTTAATGAGGAACCC 57.111 43.478 0.96 0.00 46.46 4.11
2550 5628 5.047235 GGCTACCGTCATCATAGAGGTTAAT 60.047 44.000 0.00 0.00 36.49 1.40
2553 5631 2.628657 GGCTACCGTCATCATAGAGGTT 59.371 50.000 0.00 0.00 36.49 3.50
2554 5632 2.240279 GGCTACCGTCATCATAGAGGT 58.760 52.381 0.00 0.00 38.86 3.85
2584 5662 1.740025 GGAACCATTCGAGAAAGCCAG 59.260 52.381 0.00 0.00 0.00 4.85
2586 5664 0.727398 CGGAACCATTCGAGAAAGCC 59.273 55.000 0.00 0.00 0.00 4.35
2588 5666 2.380084 TCCGGAACCATTCGAGAAAG 57.620 50.000 0.00 0.00 0.00 2.62
2603 5681 0.390340 CGGCCATCAGTATCATCCGG 60.390 60.000 2.24 0.00 32.55 5.14
2605 5683 0.036010 CCCGGCCATCAGTATCATCC 60.036 60.000 2.24 0.00 0.00 3.51
2606 5684 0.976641 TCCCGGCCATCAGTATCATC 59.023 55.000 2.24 0.00 0.00 2.92
2610 5688 0.979665 CTCATCCCGGCCATCAGTAT 59.020 55.000 2.24 0.00 0.00 2.12
2622 5700 1.967319 TTATTCAAGCGCCTCATCCC 58.033 50.000 2.29 0.00 0.00 3.85
2629 5707 3.791353 GTGTTTGCTATTATTCAAGCGCC 59.209 43.478 2.29 0.00 41.77 6.53
2646 5724 6.198687 CGCCAATGTATCATTATTCGTGTTT 58.801 36.000 0.00 0.00 0.00 2.83
2652 5730 3.163594 GCGCGCCAATGTATCATTATTC 58.836 45.455 23.24 0.00 0.00 1.75
2669 5747 5.629020 ACCTATATTAATTTTTGCATGCGCG 59.371 36.000 14.09 0.00 42.97 6.86
2706 5786 5.851693 TGTCCAAGGGATGTATTCATAGGAT 59.148 40.000 0.00 0.00 32.73 3.24
2707 5787 5.223655 TGTCCAAGGGATGTATTCATAGGA 58.776 41.667 0.00 0.00 32.73 2.94
2719 5799 2.173519 CATGTTGCTTGTCCAAGGGAT 58.826 47.619 8.97 0.00 38.80 3.85
2722 5802 1.682854 ACACATGTTGCTTGTCCAAGG 59.317 47.619 8.97 0.00 38.80 3.61
2739 5819 8.514594 TCATCATCAAGAATTCAAAACCTACAC 58.485 33.333 8.44 0.00 0.00 2.90
2761 5841 4.984785 TCTTAGCATGCGATAGTGTTCATC 59.015 41.667 13.01 0.00 39.35 2.92
2798 5878 7.907214 AGTCGATTTAGTATGTCAAAAAGCT 57.093 32.000 0.00 0.00 0.00 3.74
2814 5894 6.127423 TGGACTAGCTAGCTTAAAGTCGATTT 60.127 38.462 27.82 5.87 37.93 2.17
2836 5916 4.836175 TGATCGTATTGCCCTAAGTATGGA 59.164 41.667 0.00 0.00 0.00 3.41
2837 5917 5.147330 TGATCGTATTGCCCTAAGTATGG 57.853 43.478 0.00 0.00 0.00 2.74
2847 5927 5.465935 TGGTTTTCTTTTGATCGTATTGCC 58.534 37.500 0.00 0.00 0.00 4.52
2858 5938 2.035832 AGCCCGTCATGGTTTTCTTTTG 59.964 45.455 0.00 0.00 35.15 2.44
2870 5950 2.235016 TGCTTGTTTTTAGCCCGTCAT 58.765 42.857 0.00 0.00 37.85 3.06
2877 5957 6.958752 ACGTTTTTCATTTGCTTGTTTTTAGC 59.041 30.769 0.00 0.00 39.10 3.09
2895 5975 9.567848 GTCATCACCATGATAATAAACGTTTTT 57.432 29.630 20.19 14.70 41.26 1.94
2901 5981 7.765695 ATGGGTCATCACCATGATAATAAAC 57.234 36.000 0.00 0.00 46.57 2.01
2915 5995 1.495574 TGATCATGGCATGGGTCATCA 59.504 47.619 26.15 22.50 37.20 3.07
2922 6002 0.039527 CACGCATGATCATGGCATGG 60.040 55.000 31.62 15.96 42.53 3.66
2935 6015 2.698803 TCTGAAATAGCACACACGCAT 58.301 42.857 0.00 0.00 0.00 4.73
2938 6018 2.805671 TGGTTCTGAAATAGCACACACG 59.194 45.455 0.00 0.00 0.00 4.49
2946 6026 4.836825 TGAAGGAGCTGGTTCTGAAATAG 58.163 43.478 0.00 0.00 0.00 1.73
2947 6027 4.908601 TGAAGGAGCTGGTTCTGAAATA 57.091 40.909 0.00 0.00 0.00 1.40
2948 6028 3.795688 TGAAGGAGCTGGTTCTGAAAT 57.204 42.857 0.00 0.00 0.00 2.17
2955 6038 4.946157 CACTAATTCATGAAGGAGCTGGTT 59.054 41.667 14.54 3.29 0.00 3.67
2967 6050 6.149973 ACATCCACACACTTCACTAATTCATG 59.850 38.462 0.00 0.00 0.00 3.07
2968 6051 6.149973 CACATCCACACACTTCACTAATTCAT 59.850 38.462 0.00 0.00 0.00 2.57
2970 6053 5.617751 GCACATCCACACACTTCACTAATTC 60.618 44.000 0.00 0.00 0.00 2.17
2975 6058 1.134128 TGCACATCCACACACTTCACT 60.134 47.619 0.00 0.00 0.00 3.41
2979 6062 1.881973 GTCATGCACATCCACACACTT 59.118 47.619 0.00 0.00 0.00 3.16
2992 6075 6.294955 CCAGATAGAATGTAGCTAGTCATGCA 60.295 42.308 0.00 0.00 0.00 3.96
3020 6103 2.575532 GATGCAAACAGCCATAGCCTA 58.424 47.619 0.00 0.00 44.83 3.93
3022 6105 0.029834 CGATGCAAACAGCCATAGCC 59.970 55.000 0.00 0.00 44.83 3.93
3029 6112 1.621107 CATCAACCGATGCAAACAGC 58.379 50.000 0.00 0.00 42.54 4.40
3038 6121 1.153086 GGCCTCTGCATCAACCGAT 60.153 57.895 0.00 0.00 40.13 4.18
3042 6125 0.809241 CTCTCGGCCTCTGCATCAAC 60.809 60.000 0.00 0.00 40.13 3.18
3051 6134 3.545366 AAAAGGATTACTCTCGGCCTC 57.455 47.619 0.00 0.00 0.00 4.70
3126 6209 7.054751 CCAAGAATAAAAAGAGTAGGTAGGGG 58.945 42.308 0.00 0.00 0.00 4.79
3129 6212 7.110155 TGCCCAAGAATAAAAAGAGTAGGTAG 58.890 38.462 0.00 0.00 0.00 3.18
3146 6232 1.140312 ACAGAGAAGGTTGCCCAAGA 58.860 50.000 0.00 0.00 0.00 3.02
3196 6282 6.328934 TCCCTAGTAGTTCCAATCATGCATTA 59.671 38.462 0.00 0.00 0.00 1.90
3199 6285 4.037222 TCCCTAGTAGTTCCAATCATGCA 58.963 43.478 0.00 0.00 0.00 3.96
3200 6286 4.345257 TCTCCCTAGTAGTTCCAATCATGC 59.655 45.833 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.