Multiple sequence alignment - TraesCS1B01G109800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G109800 chr1B 100.000 8087 0 0 1 8087 121771284 121763198 0.000000e+00 14934.0
1 TraesCS1B01G109800 chr1B 93.838 714 33 9 1 710 629267579 629268285 0.000000e+00 1064.0
2 TraesCS1B01G109800 chr1B 87.937 887 32 15 859 1699 428093314 428094171 0.000000e+00 976.0
3 TraesCS1B01G109800 chr1B 91.420 676 23 12 3025 3686 428094341 428094995 0.000000e+00 894.0
4 TraesCS1B01G109800 chr1B 98.619 362 5 0 2425 2786 447324736 447325097 6.840000e-180 641.0
5 TraesCS1B01G109800 chr1B 93.785 354 21 1 2022 2375 667227079 667226727 1.550000e-146 531.0
6 TraesCS1B01G109800 chr1B 91.286 241 15 4 2804 3042 667225977 667225741 2.820000e-84 324.0
7 TraesCS1B01G109800 chr1B 92.126 127 10 0 710 836 428077332 428077458 6.450000e-41 180.0
8 TraesCS1B01G109800 chr1B 95.946 74 3 0 8014 8087 428095005 428095078 3.960000e-23 121.0
9 TraesCS1B01G109800 chr1B 100.000 28 0 0 824 851 428093256 428093283 1.500000e-02 52.8
10 TraesCS1B01G109800 chr4B 93.687 3786 190 29 4330 8087 409738768 409735004 0.000000e+00 5622.0
11 TraesCS1B01G109800 chr4B 93.930 1565 72 11 2782 4332 409740363 409738808 0.000000e+00 2342.0
12 TraesCS1B01G109800 chr4B 94.835 697 29 1 1727 2423 409741038 409740349 0.000000e+00 1081.0
13 TraesCS1B01G109800 chr4B 99.162 358 3 0 2424 2781 648195884 648195527 0.000000e+00 645.0
14 TraesCS1B01G109800 chr4B 99.162 358 3 0 2424 2781 648221278 648220921 0.000000e+00 645.0
15 TraesCS1B01G109800 chr4B 99.162 358 3 0 2424 2781 648271182 648270825 0.000000e+00 645.0
16 TraesCS1B01G109800 chr4B 98.883 358 4 0 2424 2781 306604325 306604682 2.460000e-179 640.0
17 TraesCS1B01G109800 chr4B 80.916 131 18 4 2914 3042 222966103 222965978 6.680000e-16 97.1
18 TraesCS1B01G109800 chr2B 96.603 2973 85 8 3025 5994 516285205 516288164 0.000000e+00 4916.0
19 TraesCS1B01G109800 chr2B 96.223 1880 56 8 6222 8087 516288169 516290047 0.000000e+00 3064.0
20 TraesCS1B01G109800 chr2B 90.102 586 24 8 710 1261 516284288 516284873 0.000000e+00 730.0
21 TraesCS1B01G109800 chr2B 83.090 479 68 12 3054 3529 516286032 516286500 2.700000e-114 424.0
22 TraesCS1B01G109800 chr2B 97.710 131 2 1 1572 1702 516284908 516285037 2.940000e-54 224.0
23 TraesCS1B01G109800 chr2B 95.556 90 4 0 1702 1791 516285078 516285167 2.350000e-30 145.0
24 TraesCS1B01G109800 chr6B 95.830 2182 80 7 3815 5994 550343674 550345846 0.000000e+00 3515.0
25 TraesCS1B01G109800 chr6B 96.415 1869 60 7 4127 5994 457290136 457288274 0.000000e+00 3073.0
26 TraesCS1B01G109800 chr6B 96.170 1880 55 9 6222 8087 457288269 457286393 0.000000e+00 3057.0
27 TraesCS1B01G109800 chr6B 96.777 1117 23 4 3025 4132 457303555 457302443 0.000000e+00 1851.0
28 TraesCS1B01G109800 chr6B 95.435 1139 45 6 6222 7354 550345851 550346988 0.000000e+00 1808.0
29 TraesCS1B01G109800 chr6B 93.732 1021 33 8 713 1702 457304741 457303721 0.000000e+00 1502.0
30 TraesCS1B01G109800 chr6B 95.070 710 30 5 1 709 30059625 30058920 0.000000e+00 1112.0
31 TraesCS1B01G109800 chr6B 86.990 1053 45 24 710 1699 550342226 550343249 0.000000e+00 1101.0
32 TraesCS1B01G109800 chr6B 94.318 704 26 4 7396 8087 550346983 550347684 0.000000e+00 1066.0
33 TraesCS1B01G109800 chr6B 87.823 657 52 10 15 666 87674767 87675400 0.000000e+00 745.0
34 TraesCS1B01G109800 chr6B 97.177 248 6 1 3025 3272 550343429 550343675 1.260000e-112 418.0
35 TraesCS1B01G109800 chr6B 96.667 90 3 0 1702 1791 457303682 457303593 5.060000e-32 150.0
36 TraesCS1B01G109800 chr6B 98.438 64 1 0 1728 1791 550343328 550343391 6.630000e-21 113.0
37 TraesCS1B01G109800 chr6B 88.889 72 7 1 7335 7406 252553889 252553819 4.020000e-13 87.9
38 TraesCS1B01G109800 chr5A 83.031 3029 443 53 4325 7321 432467230 432464241 0.000000e+00 2680.0
39 TraesCS1B01G109800 chr5A 78.571 266 18 15 1435 1662 503951200 503951464 1.090000e-28 139.0
40 TraesCS1B01G109800 chr5D 87.839 1694 174 28 4330 6011 43331833 43333506 0.000000e+00 1958.0
41 TraesCS1B01G109800 chr5D 81.075 1321 215 28 6009 7321 43333566 43334859 0.000000e+00 1022.0
42 TraesCS1B01G109800 chr5D 91.667 564 42 5 69 629 70393759 70394320 0.000000e+00 776.0
43 TraesCS1B01G109800 chr5D 84.040 708 85 18 7400 8087 43335072 43335771 0.000000e+00 656.0
44 TraesCS1B01G109800 chr5D 81.997 661 90 19 3676 4315 43331124 43331776 1.190000e-147 534.0
45 TraesCS1B01G109800 chr5D 83.140 516 68 17 3050 3558 43331316 43331819 3.440000e-123 453.0
46 TraesCS1B01G109800 chr5D 81.426 603 55 30 709 1259 43330115 43330712 2.680000e-119 440.0
47 TraesCS1B01G109800 chr6D 87.189 1686 189 21 4330 6005 227523892 227525560 0.000000e+00 1892.0
48 TraesCS1B01G109800 chr6D 86.985 1675 192 22 4331 5994 424955482 424953823 0.000000e+00 1862.0
49 TraesCS1B01G109800 chr6D 79.699 1330 223 33 6012 7321 424953738 424952436 0.000000e+00 917.0
50 TraesCS1B01G109800 chr6D 79.726 1312 216 33 6029 7321 227525619 227526899 0.000000e+00 904.0
51 TraesCS1B01G109800 chr6D 83.544 711 81 27 7400 8087 227527111 227527808 4.120000e-177 632.0
52 TraesCS1B01G109800 chr6D 80.974 657 116 5 6458 7110 218378540 218377889 5.600000e-141 512.0
53 TraesCS1B01G109800 chr6D 84.554 505 60 14 3823 4315 227523337 227523835 1.220000e-132 484.0
54 TraesCS1B01G109800 chr6D 83.883 515 66 15 3050 3558 227523375 227523878 7.340000e-130 475.0
55 TraesCS1B01G109800 chr6D 90.152 132 11 2 1268 1399 227511966 227512095 3.880000e-38 171.0
56 TraesCS1B01G109800 chr7B 95.954 1137 42 3 6222 7354 227754284 227755420 0.000000e+00 1842.0
57 TraesCS1B01G109800 chr7B 95.842 986 37 4 3455 4438 227739077 227740060 0.000000e+00 1591.0
58 TraesCS1B01G109800 chr7B 95.021 703 24 4 7396 8087 227755415 227756117 0.000000e+00 1094.0
59 TraesCS1B01G109800 chr7B 86.402 1059 45 20 710 1699 227737904 227738932 0.000000e+00 1066.0
60 TraesCS1B01G109800 chr7B 98.892 361 4 0 2424 2784 24403726 24403366 0.000000e+00 645.0
61 TraesCS1B01G109800 chr7B 81.418 705 97 26 3676 4356 198616316 198615622 5.520000e-151 545.0
62 TraesCS1B01G109800 chr7B 83.107 515 68 16 3050 3558 198616123 198615622 1.240000e-122 451.0
63 TraesCS1B01G109800 chr7B 96.667 90 3 0 1702 1791 227738975 227739064 5.060000e-32 150.0
64 TraesCS1B01G109800 chr2D 85.858 1690 208 22 4331 6010 354685201 354686869 0.000000e+00 1768.0
65 TraesCS1B01G109800 chr2D 82.846 513 73 13 3050 3558 354684685 354685186 5.760000e-121 446.0
66 TraesCS1B01G109800 chr2D 89.831 59 6 0 3553 3611 354684304 354684362 8.700000e-10 76.8
67 TraesCS1B01G109800 chr4A 79.757 1319 224 31 6016 7321 460274239 460272951 0.000000e+00 917.0
68 TraesCS1B01G109800 chr4A 94.221 571 28 5 1 569 738518257 738517690 0.000000e+00 867.0
69 TraesCS1B01G109800 chr4A 82.587 603 48 26 709 1261 499956381 499956976 5.680000e-131 479.0
70 TraesCS1B01G109800 chr4A 79.450 618 53 30 709 1261 460278065 460277457 3.560000e-98 370.0
71 TraesCS1B01G109800 chr4A 84.351 262 11 10 1435 1668 499957424 499957683 6.310000e-56 230.0
72 TraesCS1B01G109800 chr4A 83.398 259 17 12 1435 1668 460277026 460276769 4.910000e-52 217.0
73 TraesCS1B01G109800 chr4A 94.697 132 6 1 1268 1399 499957104 499957234 3.830000e-48 204.0
74 TraesCS1B01G109800 chr4A 93.233 133 7 2 1268 1399 460277347 460277216 2.300000e-45 195.0
75 TraesCS1B01G109800 chr4D 81.200 1133 175 26 6205 7321 344296061 344294951 0.000000e+00 878.0
76 TraesCS1B01G109800 chr4D 82.790 767 97 23 7348 8087 344294848 344294090 0.000000e+00 652.0
77 TraesCS1B01G109800 chr4D 97.970 197 4 0 1727 1923 331639892 331640088 7.770000e-90 342.0
78 TraesCS1B01G109800 chr3B 87.853 708 53 12 16 712 494594039 494594724 0.000000e+00 800.0
79 TraesCS1B01G109800 chr3B 97.849 372 6 1 2424 2793 353864607 353864978 6.840000e-180 641.0
80 TraesCS1B01G109800 chr3B 81.684 677 92 26 3676 4332 233306436 233305772 1.190000e-147 534.0
81 TraesCS1B01G109800 chr3B 82.364 516 74 14 3051 3563 233306243 233305742 4.480000e-117 433.0
82 TraesCS1B01G109800 chr5B 87.819 706 55 13 13 709 692749657 692750340 0.000000e+00 798.0
83 TraesCS1B01G109800 chr5B 98.886 359 4 0 2424 2782 100020744 100020386 6.840000e-180 641.0
84 TraesCS1B01G109800 chr5B 90.909 55 3 2 2901 2955 170194278 170194330 1.130000e-08 73.1
85 TraesCS1B01G109800 chr3D 83.943 766 88 23 7347 8087 133259668 133258913 0.000000e+00 701.0
86 TraesCS1B01G109800 chr3A 98.886 359 4 0 2424 2782 698274973 698274615 6.840000e-180 641.0
87 TraesCS1B01G109800 chr3A 82.692 624 77 25 14 625 596117884 596118488 7.190000e-145 525.0
88 TraesCS1B01G109800 chr3A 86.869 495 26 9 942 1399 30559549 30559057 1.200000e-142 518.0
89 TraesCS1B01G109800 chr3A 85.577 312 15 14 1435 1717 30558867 30558557 4.740000e-77 300.0
90 TraesCS1B01G109800 chr1A 93.732 351 21 1 2025 2375 575365711 575365362 7.190000e-145 525.0
91 TraesCS1B01G109800 chr1A 80.952 609 46 28 709 1256 67009435 67010034 1.260000e-112 418.0
92 TraesCS1B01G109800 chr1A 88.546 227 24 1 2782 3006 575364622 575364396 2.880000e-69 274.0
93 TraesCS1B01G109800 chr1A 80.695 259 37 10 6053 6307 576612449 576612698 1.070000e-43 189.0
94 TraesCS1B01G109800 chr1A 84.393 173 10 7 1511 1668 67010538 67010708 3.910000e-33 154.0
95 TraesCS1B01G109800 chr1A 92.857 42 3 0 2914 2955 563406889 563406848 2.440000e-05 62.1
96 TraesCS1B01G109800 chr1D 92.373 354 26 1 2022 2375 479052196 479051844 3.370000e-138 503.0
97 TraesCS1B01G109800 chr1D 90.114 263 21 3 2782 3042 479051102 479050843 3.620000e-88 337.0
98 TraesCS1B01G109800 chr1D 79.699 399 59 17 6053 6446 480344938 480345319 1.340000e-67 268.0
99 TraesCS1B01G109800 chr1D 83.206 131 15 4 2914 3042 417760889 417760764 6.630000e-21 113.0
100 TraesCS1B01G109800 chr7D 83.085 603 45 25 709 1261 316749615 316750210 5.640000e-136 496.0
101 TraesCS1B01G109800 chr7D 85.385 260 9 8 1435 1668 316750658 316750914 8.110000e-60 243.0
102 TraesCS1B01G109800 chr7D 95.455 132 5 1 1268 1399 316750339 316750469 8.220000e-50 209.0
103 TraesCS1B01G109800 chr7A 84.274 496 72 6 215 707 557036470 557036962 5.680000e-131 479.0
104 TraesCS1B01G109800 chr7A 82.000 600 48 24 709 1256 444007172 444006581 9.570000e-124 455.0
105 TraesCS1B01G109800 chr7A 81.743 608 43 26 709 1256 39306952 39306353 5.760000e-121 446.0
106 TraesCS1B01G109800 chr7A 93.023 129 8 1 581 708 236114559 236114431 3.850000e-43 187.0
107 TraesCS1B01G109800 chr7A 90.977 133 11 1 577 708 236134817 236134685 2.320000e-40 178.0
108 TraesCS1B01G109800 chr7A 84.393 173 10 8 1511 1668 39305849 39305679 3.910000e-33 154.0
109 TraesCS1B01G109800 chr2A 81.445 609 45 30 709 1256 413483209 413482608 3.470000e-118 436.0
110 TraesCS1B01G109800 chr2A 84.393 173 10 9 1511 1668 413482104 413481934 3.910000e-33 154.0
111 TraesCS1B01G109800 chr6A 80.921 608 49 29 709 1256 603695194 603695794 1.260000e-112 418.0
112 TraesCS1B01G109800 chr6A 94.737 95 3 2 1574 1668 603696377 603696469 6.540000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G109800 chr1B 121763198 121771284 8086 True 14934.000000 14934 100.000000 1 8087 1 chr1B.!!$R1 8086
1 TraesCS1B01G109800 chr1B 629267579 629268285 706 False 1064.000000 1064 93.838000 1 710 1 chr1B.!!$F3 709
2 TraesCS1B01G109800 chr1B 428093256 428095078 1822 False 510.950000 976 93.825750 824 8087 4 chr1B.!!$F4 7263
3 TraesCS1B01G109800 chr1B 667225741 667227079 1338 True 427.500000 531 92.535500 2022 3042 2 chr1B.!!$R2 1020
4 TraesCS1B01G109800 chr4B 409735004 409741038 6034 True 3015.000000 5622 94.150667 1727 8087 3 chr4B.!!$R5 6360
5 TraesCS1B01G109800 chr2B 516284288 516290047 5759 False 1583.833333 4916 93.214000 710 8087 6 chr2B.!!$F1 7377
6 TraesCS1B01G109800 chr6B 457286393 457290136 3743 True 3065.000000 3073 96.292500 4127 8087 2 chr6B.!!$R3 3960
7 TraesCS1B01G109800 chr6B 550342226 550347684 5458 False 1336.833333 3515 94.698000 710 8087 6 chr6B.!!$F2 7377
8 TraesCS1B01G109800 chr6B 457302443 457304741 2298 True 1167.666667 1851 95.725333 713 4132 3 chr6B.!!$R4 3419
9 TraesCS1B01G109800 chr6B 30058920 30059625 705 True 1112.000000 1112 95.070000 1 709 1 chr6B.!!$R1 708
10 TraesCS1B01G109800 chr6B 87674767 87675400 633 False 745.000000 745 87.823000 15 666 1 chr6B.!!$F1 651
11 TraesCS1B01G109800 chr5A 432464241 432467230 2989 True 2680.000000 2680 83.031000 4325 7321 1 chr5A.!!$R1 2996
12 TraesCS1B01G109800 chr5D 43330115 43335771 5656 False 843.833333 1958 83.252833 709 8087 6 chr5D.!!$F2 7378
13 TraesCS1B01G109800 chr5D 70393759 70394320 561 False 776.000000 776 91.667000 69 629 1 chr5D.!!$F1 560
14 TraesCS1B01G109800 chr6D 424952436 424955482 3046 True 1389.500000 1862 83.342000 4331 7321 2 chr6D.!!$R2 2990
15 TraesCS1B01G109800 chr6D 227523337 227527808 4471 False 877.400000 1892 83.779200 3050 8087 5 chr6D.!!$F2 5037
16 TraesCS1B01G109800 chr6D 218377889 218378540 651 True 512.000000 512 80.974000 6458 7110 1 chr6D.!!$R1 652
17 TraesCS1B01G109800 chr7B 227754284 227756117 1833 False 1468.000000 1842 95.487500 6222 8087 2 chr7B.!!$F2 1865
18 TraesCS1B01G109800 chr7B 227737904 227740060 2156 False 935.666667 1591 92.970333 710 4438 3 chr7B.!!$F1 3728
19 TraesCS1B01G109800 chr7B 198615622 198616316 694 True 498.000000 545 82.262500 3050 4356 2 chr7B.!!$R2 1306
20 TraesCS1B01G109800 chr2D 354684304 354686869 2565 False 763.600000 1768 86.178333 3050 6010 3 chr2D.!!$F1 2960
21 TraesCS1B01G109800 chr4A 738517690 738518257 567 True 867.000000 867 94.221000 1 569 1 chr4A.!!$R1 568
22 TraesCS1B01G109800 chr4A 460272951 460278065 5114 True 424.750000 917 83.959500 709 7321 4 chr4A.!!$R2 6612
23 TraesCS1B01G109800 chr4A 499956381 499957683 1302 False 304.333333 479 87.211667 709 1668 3 chr4A.!!$F1 959
24 TraesCS1B01G109800 chr4D 344294090 344296061 1971 True 765.000000 878 81.995000 6205 8087 2 chr4D.!!$R1 1882
25 TraesCS1B01G109800 chr3B 494594039 494594724 685 False 800.000000 800 87.853000 16 712 1 chr3B.!!$F2 696
26 TraesCS1B01G109800 chr3B 233305742 233306436 694 True 483.500000 534 82.024000 3051 4332 2 chr3B.!!$R1 1281
27 TraesCS1B01G109800 chr5B 692749657 692750340 683 False 798.000000 798 87.819000 13 709 1 chr5B.!!$F2 696
28 TraesCS1B01G109800 chr3D 133258913 133259668 755 True 701.000000 701 83.943000 7347 8087 1 chr3D.!!$R1 740
29 TraesCS1B01G109800 chr3A 596117884 596118488 604 False 525.000000 525 82.692000 14 625 1 chr3A.!!$F1 611
30 TraesCS1B01G109800 chr3A 30558557 30559549 992 True 409.000000 518 86.223000 942 1717 2 chr3A.!!$R2 775
31 TraesCS1B01G109800 chr1A 575364396 575365711 1315 True 399.500000 525 91.139000 2025 3006 2 chr1A.!!$R2 981
32 TraesCS1B01G109800 chr1A 67009435 67010708 1273 False 286.000000 418 82.672500 709 1668 2 chr1A.!!$F2 959
33 TraesCS1B01G109800 chr1D 479050843 479052196 1353 True 420.000000 503 91.243500 2022 3042 2 chr1D.!!$R2 1020
34 TraesCS1B01G109800 chr7D 316749615 316750914 1299 False 316.000000 496 87.975000 709 1668 3 chr7D.!!$F1 959
35 TraesCS1B01G109800 chr7A 444006581 444007172 591 True 455.000000 455 82.000000 709 1256 1 chr7A.!!$R3 547
36 TraesCS1B01G109800 chr7A 39305679 39306952 1273 True 300.000000 446 83.068000 709 1668 2 chr7A.!!$R4 959
37 TraesCS1B01G109800 chr2A 413481934 413483209 1275 True 295.000000 436 82.919000 709 1668 2 chr2A.!!$R1 959
38 TraesCS1B01G109800 chr6A 603695194 603696469 1275 False 282.500000 418 87.829000 709 1668 2 chr6A.!!$F1 959

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 978 1.764054 CCTCTGCTTCTCCCCCGAT 60.764 63.158 0.00 0.0 0.00 4.18 F
2516 3863 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.0 36.69 2.94 F
2597 3944 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.0 0.00 4.34 F
2740 4087 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.0 0.00 5.28 F
2997 4346 0.732880 AATCCGACTCGTTGACGCTG 60.733 55.000 0.00 0.0 39.60 5.18 F
3010 4359 2.108168 TGACGCTGCCTAGTTAGGATT 58.892 47.619 9.39 0.0 46.63 3.01 F
4809 6251 1.067142 CGACGATCCCCAAGTGAAAGA 60.067 52.381 0.00 0.0 0.00 2.52 F
5081 6523 2.488545 GAGGAGTCAGAGCGTCACTTTA 59.511 50.000 0.00 0.0 0.00 1.85 F
6022 7538 3.066291 TGTGTGTGTCCAGAACAAGTT 57.934 42.857 0.00 0.0 40.31 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2578 3925 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.0 0.00 4.52 R
4052 5433 0.108615 CATTGCGGAGACCTCGTTCT 60.109 55.000 0.00 0.0 0.00 3.01 R
4522 5964 0.040067 CCCAACGCTTGAAAGACAGC 60.040 55.000 0.00 0.0 0.00 4.40 R
4630 6072 4.160814 TCAAGCAGATTCATGGGGATTTTG 59.839 41.667 0.00 0.0 0.00 2.44 R
4809 6251 4.163458 TGTTCCTCAACTGTGTAACCTCTT 59.837 41.667 0.00 0.0 34.36 2.85 R
5081 6523 6.266103 ACACTTGGTCTGTTCATGATCATTTT 59.734 34.615 5.16 0.0 0.00 1.82 R
5707 7156 3.610242 CGTGTTCTCATGTAGAGCTTCAC 59.390 47.826 0.00 0.0 44.35 3.18 R
6330 7864 4.039609 ACCGCTATTCATCATGATCAGTCA 59.960 41.667 4.86 0.0 39.04 3.41 R
7331 8966 3.467374 TGGTTGAACCAGAAAAATGCC 57.533 42.857 14.05 0.0 44.79 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
533 578 3.606687 CTGGTCAAGCGGTTAACCTAAT 58.393 45.455 20.02 5.25 32.82 1.73
553 599 7.023575 CCTAATGTGTAAAGAATGCAACTGTC 58.976 38.462 0.00 0.00 0.00 3.51
575 621 3.636300 CCAGAGTTCGAATCCTCATCTCT 59.364 47.826 15.72 11.21 0.00 3.10
579 625 3.387374 AGTTCGAATCCTCATCTCTGCAT 59.613 43.478 0.00 0.00 0.00 3.96
892 978 1.764054 CCTCTGCTTCTCCCCCGAT 60.764 63.158 0.00 0.00 0.00 4.18
1439 1893 7.815840 TGGAGTGAATTTGACTAATTTGTCA 57.184 32.000 17.14 17.14 44.17 3.58
1440 1894 8.408043 TGGAGTGAATTTGACTAATTTGTCAT 57.592 30.769 20.78 8.62 45.03 3.06
1815 2454 5.991328 TCAGTGTTCTGAACATTTCTGTC 57.009 39.130 25.84 14.52 46.17 3.51
1816 2455 4.816385 TCAGTGTTCTGAACATTTCTGTCC 59.184 41.667 25.84 13.98 46.17 4.02
1817 2456 4.576053 CAGTGTTCTGAACATTTCTGTCCA 59.424 41.667 24.44 0.00 44.35 4.02
1818 2457 4.818546 AGTGTTCTGAACATTTCTGTCCAG 59.181 41.667 24.44 0.00 44.35 3.86
1877 2516 6.837048 AGTTGAATTTTACTAGGGGTTTGTGT 59.163 34.615 0.00 0.00 0.00 3.72
1891 2530 6.769341 AGGGGTTTGTGTTACTTAACTAGTTG 59.231 38.462 18.56 4.89 38.33 3.16
1908 2547 3.131396 AGTTGTTTGGTTCTGAGTAGCG 58.869 45.455 0.00 0.00 0.00 4.26
1927 2566 2.200067 CGTCATGTGAGATTGGAGAGC 58.800 52.381 0.00 0.00 0.00 4.09
1940 2579 5.366186 AGATTGGAGAGCTATCAGTCATGTT 59.634 40.000 11.08 0.00 0.00 2.71
1977 2616 8.232913 TCTTGAACAAAAACATTAAGGCTACT 57.767 30.769 0.00 0.00 0.00 2.57
1988 2627 7.618019 ACATTAAGGCTACTATCTCCATCAA 57.382 36.000 0.00 0.00 0.00 2.57
2049 2688 3.557595 GGTTTCGCAGAGATTCTACCATG 59.442 47.826 0.00 0.00 38.43 3.66
2066 2705 2.099263 CCATGTCCGTCGTCAGTAATCT 59.901 50.000 0.00 0.00 0.00 2.40
2070 2709 3.752747 TGTCCGTCGTCAGTAATCTTGTA 59.247 43.478 0.00 0.00 0.00 2.41
2125 2764 1.153489 CCATCACAGCGTCTGGAGG 60.153 63.158 10.80 7.17 35.51 4.30
2171 2810 8.836735 TCTTCCCTTTTAGAGAACTGGATAAAT 58.163 33.333 0.00 0.00 0.00 1.40
2177 2816 9.565213 CTTTTAGAGAACTGGATAAATGCTTTG 57.435 33.333 0.00 0.00 0.00 2.77
2191 2830 3.691049 TGCTTTGTCACTGTTAACTGC 57.309 42.857 11.98 0.00 0.00 4.40
2195 2834 3.666883 TTGTCACTGTTAACTGCAACG 57.333 42.857 11.98 0.09 0.00 4.10
2230 2869 8.797266 ATTACTTGACCGAATTTTTCAAAGTC 57.203 30.769 0.00 0.00 0.00 3.01
2354 2993 5.048921 CACATCTGCAGACATTCTTGAACTT 60.049 40.000 20.97 0.00 0.00 2.66
2423 3770 4.696479 ATCTTCCAAGAGTTGTCAGTGT 57.304 40.909 0.00 0.00 38.66 3.55
2424 3771 4.487714 TCTTCCAAGAGTTGTCAGTGTT 57.512 40.909 0.00 0.00 0.00 3.32
2425 3772 5.607939 TCTTCCAAGAGTTGTCAGTGTTA 57.392 39.130 0.00 0.00 0.00 2.41
2426 3773 5.357257 TCTTCCAAGAGTTGTCAGTGTTAC 58.643 41.667 0.00 0.00 0.00 2.50
2427 3774 5.128827 TCTTCCAAGAGTTGTCAGTGTTACT 59.871 40.000 0.00 0.00 0.00 2.24
2428 3775 5.353394 TCCAAGAGTTGTCAGTGTTACTT 57.647 39.130 0.00 0.00 0.00 2.24
2429 3776 6.474140 TCCAAGAGTTGTCAGTGTTACTTA 57.526 37.500 0.00 0.00 0.00 2.24
2430 3777 6.278363 TCCAAGAGTTGTCAGTGTTACTTAC 58.722 40.000 0.00 0.00 0.00 2.34
2431 3778 6.097839 TCCAAGAGTTGTCAGTGTTACTTACT 59.902 38.462 0.00 0.00 0.00 2.24
2432 3779 6.761714 CCAAGAGTTGTCAGTGTTACTTACTT 59.238 38.462 0.00 0.00 0.00 2.24
2433 3780 7.924412 CCAAGAGTTGTCAGTGTTACTTACTTA 59.076 37.037 0.00 0.00 0.00 2.24
2434 3781 8.753175 CAAGAGTTGTCAGTGTTACTTACTTAC 58.247 37.037 0.00 0.00 0.00 2.34
2435 3782 7.137426 AGAGTTGTCAGTGTTACTTACTTACG 58.863 38.462 0.00 0.00 0.00 3.18
2436 3783 7.012704 AGAGTTGTCAGTGTTACTTACTTACGA 59.987 37.037 0.00 0.00 0.00 3.43
2437 3784 7.483307 AGTTGTCAGTGTTACTTACTTACGAA 58.517 34.615 0.00 0.00 0.00 3.85
2438 3785 7.646922 AGTTGTCAGTGTTACTTACTTACGAAG 59.353 37.037 0.00 0.00 0.00 3.79
2439 3786 5.916883 TGTCAGTGTTACTTACTTACGAAGC 59.083 40.000 0.00 0.00 0.00 3.86
2440 3787 5.344396 GTCAGTGTTACTTACTTACGAAGCC 59.656 44.000 0.00 0.00 0.00 4.35
2441 3788 5.242393 TCAGTGTTACTTACTTACGAAGCCT 59.758 40.000 0.00 0.00 0.00 4.58
2442 3789 5.924825 CAGTGTTACTTACTTACGAAGCCTT 59.075 40.000 0.00 0.00 0.00 4.35
2443 3790 6.423001 CAGTGTTACTTACTTACGAAGCCTTT 59.577 38.462 0.00 0.00 0.00 3.11
2444 3791 6.988580 AGTGTTACTTACTTACGAAGCCTTTT 59.011 34.615 0.00 0.00 0.00 2.27
2445 3792 8.143835 AGTGTTACTTACTTACGAAGCCTTTTA 58.856 33.333 0.00 0.00 0.00 1.52
2446 3793 8.929746 GTGTTACTTACTTACGAAGCCTTTTAT 58.070 33.333 0.00 0.00 0.00 1.40
2447 3794 9.143631 TGTTACTTACTTACGAAGCCTTTTATC 57.856 33.333 0.00 0.00 0.00 1.75
2448 3795 8.598924 GTTACTTACTTACGAAGCCTTTTATCC 58.401 37.037 0.00 0.00 0.00 2.59
2449 3796 6.111382 ACTTACTTACGAAGCCTTTTATCCC 58.889 40.000 0.00 0.00 0.00 3.85
2450 3797 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
2451 3798 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
2452 3799 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
2453 3800 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
2454 3801 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
2455 3802 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
2456 3803 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
2457 3804 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
2458 3805 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
2459 3806 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
2468 3815 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2469 3816 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2470 3817 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2471 3818 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2472 3819 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
2473 3820 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
2474 3821 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
2475 3822 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
2476 3823 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
2477 3824 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
2478 3825 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
2479 3826 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
2480 3827 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
2481 3828 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
2482 3829 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
2483 3830 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
2484 3831 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
2485 3832 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
2493 3840 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
2494 3841 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
2495 3842 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
2496 3843 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
2497 3844 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
2498 3845 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
2499 3846 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
2500 3847 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
2501 3848 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
2502 3849 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
2503 3850 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
2504 3851 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
2505 3852 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
2506 3853 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
2509 3856 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
2510 3857 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
2511 3858 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
2512 3859 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
2513 3860 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
2514 3861 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
2515 3862 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
2516 3863 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
2517 3864 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
2518 3865 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
2519 3866 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
2520 3867 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
2521 3868 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
2522 3869 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
2523 3870 4.202695 GGAGGTCACCCATCCTAGTACTAT 60.203 50.000 2.33 0.00 33.83 2.12
2524 3871 5.395611 GAGGTCACCCATCCTAGTACTATT 58.604 45.833 2.33 0.00 33.83 1.73
2525 3872 5.395611 AGGTCACCCATCCTAGTACTATTC 58.604 45.833 2.33 0.00 31.66 1.75
2526 3873 5.136392 AGGTCACCCATCCTAGTACTATTCT 59.864 44.000 2.33 0.00 31.66 2.40
2527 3874 5.477637 GGTCACCCATCCTAGTACTATTCTC 59.522 48.000 2.33 0.00 0.00 2.87
2528 3875 5.181622 GTCACCCATCCTAGTACTATTCTCG 59.818 48.000 2.33 0.00 0.00 4.04
2529 3876 4.080687 ACCCATCCTAGTACTATTCTCGC 58.919 47.826 2.33 0.00 0.00 5.03
2530 3877 3.444388 CCCATCCTAGTACTATTCTCGCC 59.556 52.174 2.33 0.00 0.00 5.54
2531 3878 3.444388 CCATCCTAGTACTATTCTCGCCC 59.556 52.174 2.33 0.00 0.00 6.13
2532 3879 3.870538 TCCTAGTACTATTCTCGCCCA 57.129 47.619 2.33 0.00 0.00 5.36
2533 3880 4.174704 TCCTAGTACTATTCTCGCCCAA 57.825 45.455 2.33 0.00 0.00 4.12
2534 3881 4.539726 TCCTAGTACTATTCTCGCCCAAA 58.460 43.478 2.33 0.00 0.00 3.28
2535 3882 5.145564 TCCTAGTACTATTCTCGCCCAAAT 58.854 41.667 2.33 0.00 0.00 2.32
2536 3883 5.010719 TCCTAGTACTATTCTCGCCCAAATG 59.989 44.000 2.33 0.00 0.00 2.32
2537 3884 4.073293 AGTACTATTCTCGCCCAAATGG 57.927 45.455 0.00 0.00 37.09 3.16
2558 3905 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
2559 3906 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
2560 3907 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
2561 3908 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
2562 3909 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
2563 3910 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
2564 3911 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
2565 3912 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
2566 3913 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
2567 3914 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
2568 3915 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
2569 3916 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
2570 3917 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
2571 3918 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
2572 3919 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
2573 3920 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
2574 3921 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
2575 3922 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
2576 3923 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
2577 3924 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
2578 3925 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
2579 3926 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
2580 3927 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
2581 3928 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
2591 3938 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
2592 3939 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
2593 3940 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
2594 3941 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
2595 3942 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
2596 3943 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
2597 3944 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
2598 3945 1.616994 GCCAAGCCTATCACAACCCTT 60.617 52.381 0.00 0.00 0.00 3.95
2599 3946 2.356741 GCCAAGCCTATCACAACCCTTA 60.357 50.000 0.00 0.00 0.00 2.69
2600 3947 3.545703 CCAAGCCTATCACAACCCTTAG 58.454 50.000 0.00 0.00 0.00 2.18
2601 3948 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
2602 3949 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
2603 3950 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
2604 3951 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
2605 3952 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
2606 3953 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
2607 3954 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
2608 3955 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
2609 3956 7.885399 GCCTATCACAACCCTTAGATATGAAAT 59.115 37.037 0.00 0.00 0.00 2.17
2610 3957 9.442047 CCTATCACAACCCTTAGATATGAAATC 57.558 37.037 0.00 0.00 0.00 2.17
2611 3958 9.442047 CTATCACAACCCTTAGATATGAAATCC 57.558 37.037 0.00 0.00 0.00 3.01
2612 3959 7.451731 TCACAACCCTTAGATATGAAATCCT 57.548 36.000 0.00 0.00 0.00 3.24
2613 3960 7.872138 TCACAACCCTTAGATATGAAATCCTT 58.128 34.615 0.00 0.00 0.00 3.36
2614 3961 8.336235 TCACAACCCTTAGATATGAAATCCTTT 58.664 33.333 0.00 0.00 0.00 3.11
2615 3962 8.624776 CACAACCCTTAGATATGAAATCCTTTC 58.375 37.037 0.00 0.00 40.08 2.62
2627 3974 4.802918 TGAAATCCTTTCACGAGGACTTCC 60.803 45.833 11.28 0.00 46.40 3.46
2628 3975 6.977295 TGAAATCCTTTCACGAGGACTTCCT 61.977 44.000 11.28 0.00 46.40 3.36
2629 3976 7.704659 TGAAATCCTTTCACGAGGACTTCCTA 61.705 42.308 11.28 0.00 46.40 2.94
2630 3977 9.405530 TGAAATCCTTTCACGAGGACTTCCTAG 62.406 44.444 11.28 0.27 46.40 3.02
2640 3987 1.487300 GACTTCCTAGGAGGTCACCC 58.513 60.000 36.64 18.70 46.32 4.61
2641 3988 0.790993 ACTTCCTAGGAGGTCACCCA 59.209 55.000 20.38 0.00 36.53 4.51
2642 3989 1.366435 ACTTCCTAGGAGGTCACCCAT 59.634 52.381 20.38 0.00 36.53 4.00
2643 3990 2.043227 CTTCCTAGGAGGTCACCCATC 58.957 57.143 12.26 0.00 36.53 3.51
2644 3991 0.264955 TCCTAGGAGGTCACCCATCC 59.735 60.000 7.62 0.00 36.53 3.51
2645 3992 0.266152 CCTAGGAGGTCACCCATCCT 59.734 60.000 9.58 9.58 39.90 3.24
2646 3993 1.503784 CCTAGGAGGTCACCCATCCTA 59.496 57.143 10.74 10.74 38.53 2.94
2647 3994 2.491825 CCTAGGAGGTCACCCATCCTAG 60.492 59.091 24.06 24.06 46.05 3.02
2648 3995 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
2649 3996 2.224077 AGGAGGTCACCCATCCTAGTA 58.776 52.381 2.60 0.00 36.91 1.82
2650 3997 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
2651 3998 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
2652 3999 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
2653 4000 4.202695 GGAGGTCACCCATCCTAGTACTAT 60.203 50.000 2.33 0.00 33.83 2.12
2654 4001 5.395611 GAGGTCACCCATCCTAGTACTATT 58.604 45.833 2.33 0.00 33.83 1.73
2655 4002 5.395611 AGGTCACCCATCCTAGTACTATTC 58.604 45.833 2.33 0.00 31.66 1.75
2656 4003 5.136392 AGGTCACCCATCCTAGTACTATTCT 59.864 44.000 2.33 0.00 31.66 2.40
2657 4004 5.477637 GGTCACCCATCCTAGTACTATTCTC 59.522 48.000 2.33 0.00 0.00 2.87
2658 4005 5.181622 GTCACCCATCCTAGTACTATTCTCG 59.818 48.000 2.33 0.00 0.00 4.04
2659 4006 4.080687 ACCCATCCTAGTACTATTCTCGC 58.919 47.826 2.33 0.00 0.00 5.03
2660 4007 4.202588 ACCCATCCTAGTACTATTCTCGCT 60.203 45.833 2.33 0.00 0.00 4.93
2661 4008 4.396790 CCCATCCTAGTACTATTCTCGCTC 59.603 50.000 2.33 0.00 0.00 5.03
2662 4009 5.004448 CCATCCTAGTACTATTCTCGCTCA 58.996 45.833 2.33 0.00 0.00 4.26
2663 4010 5.473846 CCATCCTAGTACTATTCTCGCTCAA 59.526 44.000 2.33 0.00 0.00 3.02
2664 4011 6.016192 CCATCCTAGTACTATTCTCGCTCAAA 60.016 42.308 2.33 0.00 0.00 2.69
2665 4012 7.309499 CCATCCTAGTACTATTCTCGCTCAAAT 60.309 40.741 2.33 0.00 0.00 2.32
2666 4013 6.971602 TCCTAGTACTATTCTCGCTCAAATG 58.028 40.000 2.33 0.00 0.00 2.32
2667 4014 6.016192 TCCTAGTACTATTCTCGCTCAAATGG 60.016 42.308 2.33 0.00 0.00 3.16
2668 4015 4.950050 AGTACTATTCTCGCTCAAATGGG 58.050 43.478 0.00 0.00 0.00 4.00
2669 4016 3.914426 ACTATTCTCGCTCAAATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
2670 4017 4.222124 ACTATTCTCGCTCAAATGGGTT 57.778 40.909 0.00 0.00 0.00 4.11
2671 4018 4.589908 ACTATTCTCGCTCAAATGGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
2672 4019 4.636206 ACTATTCTCGCTCAAATGGGTTTC 59.364 41.667 0.00 0.00 0.00 2.78
2673 4020 2.559698 TCTCGCTCAAATGGGTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
2674 4021 3.071874 TCTCGCTCAAATGGGTTTCAT 57.928 42.857 0.00 0.00 37.79 2.57
2675 4022 4.214986 TCTCGCTCAAATGGGTTTCATA 57.785 40.909 0.00 0.00 34.44 2.15
2676 4023 3.938963 TCTCGCTCAAATGGGTTTCATAC 59.061 43.478 0.00 0.00 34.44 2.39
2677 4024 3.013921 TCGCTCAAATGGGTTTCATACC 58.986 45.455 0.00 0.00 46.99 2.73
2678 4025 3.016736 CGCTCAAATGGGTTTCATACCT 58.983 45.455 0.00 0.00 46.86 3.08
2679 4026 4.080807 TCGCTCAAATGGGTTTCATACCTA 60.081 41.667 0.00 0.00 46.86 3.08
2681 4028 5.277974 CGCTCAAATGGGTTTCATACCTATG 60.278 44.000 0.00 0.00 46.51 2.23
2682 4029 5.594317 GCTCAAATGGGTTTCATACCTATGT 59.406 40.000 0.00 0.00 46.51 2.29
2686 4033 5.975988 ATGGGTTTCATACCTATGTGACT 57.024 39.130 0.00 0.00 45.57 3.41
2687 4034 5.097742 TGGGTTTCATACCTATGTGACTG 57.902 43.478 0.00 0.00 46.86 3.51
2688 4035 4.080582 TGGGTTTCATACCTATGTGACTGG 60.081 45.833 0.00 0.00 46.86 4.00
2689 4036 3.877508 GGTTTCATACCTATGTGACTGGC 59.122 47.826 0.00 0.00 44.10 4.85
2690 4037 4.384208 GGTTTCATACCTATGTGACTGGCT 60.384 45.833 0.00 0.00 44.10 4.75
2691 4038 5.163343 GGTTTCATACCTATGTGACTGGCTA 60.163 44.000 0.00 0.00 44.10 3.93
2692 4039 5.791336 TTCATACCTATGTGACTGGCTAG 57.209 43.478 0.00 0.00 35.26 3.42
2693 4040 4.804597 TCATACCTATGTGACTGGCTAGT 58.195 43.478 0.69 0.69 36.06 2.57
2694 4041 5.208890 TCATACCTATGTGACTGGCTAGTT 58.791 41.667 3.47 0.00 34.72 2.24
2695 4042 5.661312 TCATACCTATGTGACTGGCTAGTTT 59.339 40.000 3.47 0.00 34.72 2.66
2696 4043 4.910458 ACCTATGTGACTGGCTAGTTTT 57.090 40.909 3.47 0.00 37.25 2.43
2697 4044 5.242795 ACCTATGTGACTGGCTAGTTTTT 57.757 39.130 3.47 0.00 37.25 1.94
2698 4045 6.368779 ACCTATGTGACTGGCTAGTTTTTA 57.631 37.500 3.47 0.00 37.25 1.52
2699 4046 6.171213 ACCTATGTGACTGGCTAGTTTTTAC 58.829 40.000 3.47 2.83 37.25 2.01
2700 4047 6.170506 CCTATGTGACTGGCTAGTTTTTACA 58.829 40.000 3.47 8.38 37.25 2.41
2701 4048 6.823689 CCTATGTGACTGGCTAGTTTTTACAT 59.176 38.462 19.20 19.20 37.25 2.29
2702 4049 7.336931 CCTATGTGACTGGCTAGTTTTTACATT 59.663 37.037 19.92 10.45 37.25 2.71
2703 4050 6.312399 TGTGACTGGCTAGTTTTTACATTG 57.688 37.500 3.47 0.00 37.25 2.82
2704 4051 5.240623 TGTGACTGGCTAGTTTTTACATTGG 59.759 40.000 3.47 0.00 37.25 3.16
2705 4052 4.217550 TGACTGGCTAGTTTTTACATTGGC 59.782 41.667 3.47 0.00 37.25 4.52
2706 4053 4.407365 ACTGGCTAGTTTTTACATTGGCT 58.593 39.130 0.00 0.00 31.66 4.75
2707 4054 4.459337 ACTGGCTAGTTTTTACATTGGCTC 59.541 41.667 0.00 0.00 31.66 4.70
2708 4055 3.438781 TGGCTAGTTTTTACATTGGCTCG 59.561 43.478 0.00 0.00 0.00 5.03
2709 4056 3.426323 GCTAGTTTTTACATTGGCTCGC 58.574 45.455 0.00 0.00 0.00 5.03
2710 4057 3.730963 GCTAGTTTTTACATTGGCTCGCC 60.731 47.826 0.00 0.00 0.00 5.54
2711 4058 2.235016 AGTTTTTACATTGGCTCGCCA 58.765 42.857 6.52 6.52 45.63 5.69
2721 4068 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
2722 4069 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
2723 4070 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
2724 4071 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
2725 4072 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
2726 4073 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
2727 4074 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
2728 4075 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
2729 4076 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
2730 4077 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
2731 4078 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
2732 4079 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
2733 4080 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
2734 4081 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
2735 4082 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
2736 4083 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
2737 4084 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
2738 4085 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
2739 4086 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
2740 4087 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
2741 4088 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
2742 4089 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
2743 4090 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
2744 4091 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
2745 4092 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
2746 4093 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
2747 4094 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
2757 4104 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
2758 4105 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
2759 4106 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
2760 4107 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
2773 4120 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
2779 4126 2.588620 CCTAGAAGACATAGGCGGAGT 58.411 52.381 0.00 0.00 33.76 3.85
2780 4127 2.959707 CCTAGAAGACATAGGCGGAGTT 59.040 50.000 0.00 0.00 33.76 3.01
2781 4128 3.004944 CCTAGAAGACATAGGCGGAGTTC 59.995 52.174 0.00 0.00 33.76 3.01
2782 4129 2.457598 AGAAGACATAGGCGGAGTTCA 58.542 47.619 0.00 0.00 0.00 3.18
2783 4130 2.832129 AGAAGACATAGGCGGAGTTCAA 59.168 45.455 0.00 0.00 0.00 2.69
2784 4131 2.969628 AGACATAGGCGGAGTTCAAG 57.030 50.000 0.00 0.00 0.00 3.02
2785 4132 2.457598 AGACATAGGCGGAGTTCAAGA 58.542 47.619 0.00 0.00 0.00 3.02
2786 4133 2.428890 AGACATAGGCGGAGTTCAAGAG 59.571 50.000 0.00 0.00 0.00 2.85
2787 4134 2.166664 GACATAGGCGGAGTTCAAGAGT 59.833 50.000 0.00 0.00 0.00 3.24
2790 4137 0.759346 AGGCGGAGTTCAAGAGTTGT 59.241 50.000 0.00 0.00 0.00 3.32
2795 4142 2.797156 CGGAGTTCAAGAGTTGTCAGTG 59.203 50.000 0.00 0.00 0.00 3.66
2802 4149 4.898320 TCAAGAGTTGTCAGTGTGCATAT 58.102 39.130 0.00 0.00 0.00 1.78
2907 4254 8.255905 GTCTAAGCTAGGTAAGGTCAAATAACA 58.744 37.037 0.00 0.00 33.87 2.41
2997 4346 0.732880 AATCCGACTCGTTGACGCTG 60.733 55.000 0.00 0.00 39.60 5.18
3010 4359 2.108168 TGACGCTGCCTAGTTAGGATT 58.892 47.619 9.39 0.00 46.63 3.01
3011 4360 2.500098 TGACGCTGCCTAGTTAGGATTT 59.500 45.455 9.39 0.00 46.63 2.17
3169 4518 9.891828 TGCTCATTTGTTAATAGTTGTTGTTAG 57.108 29.630 0.00 0.00 0.00 2.34
3265 4614 4.148825 CCCCTCAAGGTCTCCGCG 62.149 72.222 0.00 0.00 0.00 6.46
3382 4732 6.780127 ACATTTTGTGTGTTATGTTTTTGGC 58.220 32.000 0.00 0.00 40.28 4.52
4052 5433 4.843728 GTGAGGAACCAACTGAATATCCA 58.156 43.478 0.00 0.00 0.00 3.41
4053 5434 4.878397 GTGAGGAACCAACTGAATATCCAG 59.122 45.833 0.00 0.00 39.93 3.86
4054 5435 4.782691 TGAGGAACCAACTGAATATCCAGA 59.217 41.667 0.00 0.00 37.59 3.86
4630 6072 5.124457 TCTGCTTCATATGCCAAAGAAACTC 59.876 40.000 6.79 0.00 0.00 3.01
4809 6251 1.067142 CGACGATCCCCAAGTGAAAGA 60.067 52.381 0.00 0.00 0.00 2.52
5081 6523 2.488545 GAGGAGTCAGAGCGTCACTTTA 59.511 50.000 0.00 0.00 0.00 1.85
5152 6594 7.348274 TCATATATTGGGGGATGTCTTCCTATC 59.652 40.741 4.85 0.00 44.75 2.08
5523 6968 4.460263 TCACAGACCCCATATTACAATGC 58.540 43.478 0.00 0.00 0.00 3.56
5707 7156 4.616802 GGTCAACAATGCAAATAGTGTTCG 59.383 41.667 0.00 0.00 36.81 3.95
6022 7538 3.066291 TGTGTGTGTCCAGAACAAGTT 57.934 42.857 0.00 0.00 40.31 2.66
6063 7579 9.296400 TCTAACAAACAACAATTTTTCTGTAGC 57.704 29.630 0.00 0.00 0.00 3.58
6081 7598 9.559958 TTCTGTAGCAGTATAACTTAACGTTAC 57.440 33.333 7.70 0.00 35.59 2.50
6170 7688 5.967088 AGTAGCGCTGGTTATAAGGATATG 58.033 41.667 22.90 0.00 0.00 1.78
6197 7717 7.822822 GTCTTCACTAAAATTTAGCCCACTCTA 59.177 37.037 12.28 0.00 0.00 2.43
6211 7731 5.073691 AGCCCACTCTATTATGTAAATGGCT 59.926 40.000 0.00 0.00 39.38 4.75
6497 8035 9.904198 TTCATTATGTCCAGAACATTTCTATCA 57.096 29.630 0.00 0.00 46.73 2.15
6594 8132 5.725325 ACTACTTCACAACCTAAGGTCTC 57.275 43.478 0.00 0.00 33.12 3.36
6687 8234 9.627123 TTCTTTCTCATCAGGAAGAAGTTTTTA 57.373 29.630 0.00 0.00 45.83 1.52
6702 8249 8.340618 AGAAGTTTTTATATCAGCTGAAGCAA 57.659 30.769 22.50 11.55 45.16 3.91
6871 8420 2.428890 ACAAAGAGATACCAGCCTCTCG 59.571 50.000 0.00 0.00 42.21 4.04
6942 8491 9.184523 TCCAACTAGGTTATAATTCCAACAATG 57.815 33.333 0.00 0.00 39.02 2.82
7076 8633 2.938451 TGAATAATGCAGAAGCTGGACG 59.062 45.455 0.00 0.00 42.74 4.79
7147 8705 6.051717 GCAGCTAAACTTCAATCTCCTGATA 58.948 40.000 0.00 0.00 31.70 2.15
7331 8966 8.319143 ACCTCGGAAAATAATATGAAATACCG 57.681 34.615 0.00 0.00 38.31 4.02
7525 9227 8.658840 AGTAGTTCTCCTTCTTTATTCTCTGT 57.341 34.615 0.00 0.00 0.00 3.41
7626 9328 8.488668 TGAGATTGGAGATGAAGTGATGAATTA 58.511 33.333 0.00 0.00 0.00 1.40
7701 9403 8.394121 GCCTTATCTCAAGAAATACTGTTTCAG 58.606 37.037 1.60 0.00 37.52 3.02
7726 9428 8.241367 AGTTTGTACTTTACTGTGAGTTTTTGG 58.759 33.333 4.38 0.00 0.00 3.28
7865 9590 9.056005 GTCATTTGATCCTATTAGTTGCATACA 57.944 33.333 0.00 0.00 0.00 2.29
8045 9785 5.179533 GGTTCTACTTTCCATCAACTCTCC 58.820 45.833 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
394 439 7.015289 TCGCGAACATTCAGAAAATTTAAGAG 58.985 34.615 6.20 0.00 0.00 2.85
428 473 2.028883 GCGAAGTTCGGGAGTTATTTCG 59.971 50.000 25.55 0.00 40.84 3.46
533 578 4.203226 TGGACAGTTGCATTCTTTACACA 58.797 39.130 0.00 0.00 0.00 3.72
553 599 3.636300 AGAGATGAGGATTCGAACTCTGG 59.364 47.826 14.67 0.00 34.84 3.86
685 736 2.024871 CTCCTACTCGGCGCTTCG 59.975 66.667 7.64 2.89 0.00 3.79
892 978 4.282195 GTCTTGAGGGAAGAAGAGAAGTCA 59.718 45.833 0.00 0.00 42.56 3.41
1328 1626 8.083828 ACTCCAATACATGTAGAATCACTCTT 57.916 34.615 11.91 0.00 35.41 2.85
1725 2354 5.316327 TCTCACATGTATCACACTGACTC 57.684 43.478 0.00 0.00 0.00 3.36
1809 2448 5.126869 TGCTTCAAAAATGTTCTGGACAGAA 59.873 36.000 10.52 10.52 44.47 3.02
1810 2449 4.644234 TGCTTCAAAAATGTTCTGGACAGA 59.356 37.500 0.00 0.00 42.62 3.41
1811 2450 4.935702 TGCTTCAAAAATGTTCTGGACAG 58.064 39.130 0.00 0.00 42.62 3.51
1812 2451 4.998671 TGCTTCAAAAATGTTCTGGACA 57.001 36.364 0.00 0.00 43.71 4.02
1813 2452 7.063780 CCAATATGCTTCAAAAATGTTCTGGAC 59.936 37.037 0.00 0.00 0.00 4.02
1814 2453 7.098477 CCAATATGCTTCAAAAATGTTCTGGA 58.902 34.615 0.00 0.00 0.00 3.86
1815 2454 6.183360 GCCAATATGCTTCAAAAATGTTCTGG 60.183 38.462 0.00 0.00 0.00 3.86
1816 2455 6.369340 TGCCAATATGCTTCAAAAATGTTCTG 59.631 34.615 0.00 0.00 0.00 3.02
1817 2456 6.465948 TGCCAATATGCTTCAAAAATGTTCT 58.534 32.000 0.00 0.00 0.00 3.01
1818 2457 6.724694 TGCCAATATGCTTCAAAAATGTTC 57.275 33.333 0.00 0.00 0.00 3.18
1877 2516 9.321562 CTCAGAACCAAACAACTAGTTAAGTAA 57.678 33.333 8.04 0.00 40.26 2.24
1891 2530 2.750948 TGACGCTACTCAGAACCAAAC 58.249 47.619 0.00 0.00 0.00 2.93
1908 2547 3.540314 AGCTCTCCAATCTCACATGAC 57.460 47.619 0.00 0.00 0.00 3.06
1927 2566 9.994432 GAACCAGATTAAAAACATGACTGATAG 57.006 33.333 0.00 0.00 0.00 2.08
1940 2579 9.712305 TGTTTTTGTTCAAGAACCAGATTAAAA 57.288 25.926 10.19 6.52 40.46 1.52
2049 2688 3.213249 ACAAGATTACTGACGACGGAC 57.787 47.619 0.00 0.00 0.00 4.79
2066 2705 0.687920 TGGTGGGCGAACAGATACAA 59.312 50.000 0.00 0.00 0.00 2.41
2070 2709 0.179045 GCTATGGTGGGCGAACAGAT 60.179 55.000 0.00 0.00 0.00 2.90
2171 2810 3.013219 TGCAGTTAACAGTGACAAAGCA 58.987 40.909 8.61 1.94 0.00 3.91
2177 2816 4.985044 ATACGTTGCAGTTAACAGTGAC 57.015 40.909 8.61 2.58 0.00 3.67
2225 2864 0.759346 AGGCACTTCTGTCCGACTTT 59.241 50.000 0.00 0.00 27.25 2.66
2230 2869 1.903877 ATGGGAGGCACTTCTGTCCG 61.904 60.000 0.00 0.00 41.55 4.79
2423 3770 7.765819 GGGATAAAAGGCTTCGTAAGTAAGTAA 59.234 37.037 0.00 0.00 39.48 2.24
2424 3771 7.093377 TGGGATAAAAGGCTTCGTAAGTAAGTA 60.093 37.037 0.00 0.00 39.48 2.24
2425 3772 6.111382 GGGATAAAAGGCTTCGTAAGTAAGT 58.889 40.000 0.00 0.00 39.48 2.24
2426 3773 6.110707 TGGGATAAAAGGCTTCGTAAGTAAG 58.889 40.000 0.00 0.00 39.48 2.34
2427 3774 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
2428 3775 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
2429 3776 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
2430 3777 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
2431 3778 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
2432 3779 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
2433 3780 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
2434 3781 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
2435 3782 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
2436 3783 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
2437 3784 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
2449 3796 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2450 3797 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2451 3798 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
2452 3799 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
2453 3800 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
2454 3801 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
2455 3802 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
2456 3803 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
2457 3804 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
2458 3805 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
2459 3806 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
2460 3807 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
2461 3808 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
2462 3809 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
2464 3811 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
2474 3821 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
2475 3822 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
2476 3823 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
2477 3824 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
2478 3825 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
2479 3826 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
2480 3827 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
2481 3828 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
2482 3829 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
2483 3830 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
2484 3831 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
2485 3832 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
2486 3833 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
2487 3834 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
2488 3835 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
2489 3836 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
2490 3837 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
2491 3838 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
2492 3839 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
2504 3851 5.181622 CGAGAATAGTACTAGGATGGGTGAC 59.818 48.000 8.85 0.00 0.00 3.67
2505 3852 5.314529 CGAGAATAGTACTAGGATGGGTGA 58.685 45.833 8.85 0.00 0.00 4.02
2506 3853 4.082679 GCGAGAATAGTACTAGGATGGGTG 60.083 50.000 8.85 0.00 0.00 4.61
2507 3854 4.080687 GCGAGAATAGTACTAGGATGGGT 58.919 47.826 8.85 0.00 0.00 4.51
2508 3855 3.444388 GGCGAGAATAGTACTAGGATGGG 59.556 52.174 8.85 0.00 0.00 4.00
2509 3856 3.444388 GGGCGAGAATAGTACTAGGATGG 59.556 52.174 8.85 0.00 0.00 3.51
2510 3857 4.079970 TGGGCGAGAATAGTACTAGGATG 58.920 47.826 8.85 0.00 0.00 3.51
2511 3858 4.383931 TGGGCGAGAATAGTACTAGGAT 57.616 45.455 8.85 0.00 0.00 3.24
2512 3859 3.870538 TGGGCGAGAATAGTACTAGGA 57.129 47.619 8.85 0.00 0.00 2.94
2513 3860 4.931661 TTTGGGCGAGAATAGTACTAGG 57.068 45.455 8.85 0.00 0.00 3.02
2514 3861 5.230942 CCATTTGGGCGAGAATAGTACTAG 58.769 45.833 8.85 0.00 0.00 2.57
2515 3862 5.209818 CCATTTGGGCGAGAATAGTACTA 57.790 43.478 4.77 4.77 0.00 1.82
2516 3863 4.073293 CCATTTGGGCGAGAATAGTACT 57.927 45.455 0.00 0.00 0.00 2.73
2537 3884 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
2538 3885 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
2539 3886 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
2540 3887 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
2541 3888 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
2542 3889 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
2543 3890 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
2544 3891 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
2546 3893 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
2547 3894 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
2548 3895 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
2549 3896 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
2550 3897 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
2551 3898 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
2552 3899 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
2553 3900 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
2554 3901 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
2555 3902 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
2556 3903 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
2557 3904 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
2558 3905 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
2559 3906 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
2560 3907 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
2561 3908 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
2562 3909 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
2563 3910 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
2564 3911 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
2575 3922 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
2576 3923 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
2577 3924 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
2578 3925 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
2579 3926 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
2580 3927 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
2581 3928 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
2582 3929 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
2583 3930 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
2584 3931 9.442047 GATTTCATATCTAAGGGTTGTGATAGG 57.558 37.037 0.00 0.00 0.00 2.57
2585 3932 9.442047 GGATTTCATATCTAAGGGTTGTGATAG 57.558 37.037 0.00 0.00 0.00 2.08
2586 3933 9.170890 AGGATTTCATATCTAAGGGTTGTGATA 57.829 33.333 0.00 0.00 0.00 2.15
2587 3934 8.050316 AGGATTTCATATCTAAGGGTTGTGAT 57.950 34.615 0.00 0.00 0.00 3.06
2588 3935 7.451731 AGGATTTCATATCTAAGGGTTGTGA 57.548 36.000 0.00 0.00 0.00 3.58
2589 3936 8.525290 AAAGGATTTCATATCTAAGGGTTGTG 57.475 34.615 0.00 0.00 27.08 3.33
2606 3953 3.328050 AGGAAGTCCTCGTGAAAGGATTT 59.672 43.478 0.85 0.85 46.90 2.17
2607 3954 2.907042 AGGAAGTCCTCGTGAAAGGATT 59.093 45.455 0.00 0.00 46.90 3.01
2608 3955 2.541466 AGGAAGTCCTCGTGAAAGGAT 58.459 47.619 0.00 0.00 46.90 3.24
2609 3956 2.011122 AGGAAGTCCTCGTGAAAGGA 57.989 50.000 0.00 0.00 44.77 3.36
2610 3957 2.166664 CCTAGGAAGTCCTCGTGAAAGG 59.833 54.545 1.05 0.05 44.77 3.11
2611 3958 3.090037 TCCTAGGAAGTCCTCGTGAAAG 58.910 50.000 9.71 0.00 44.77 2.62
2612 3959 3.090037 CTCCTAGGAAGTCCTCGTGAAA 58.910 50.000 13.77 0.00 44.77 2.69
2613 3960 2.620886 CCTCCTAGGAAGTCCTCGTGAA 60.621 54.545 13.77 0.00 44.77 3.18
2614 3961 1.064611 CCTCCTAGGAAGTCCTCGTGA 60.065 57.143 13.77 0.00 44.77 4.35
2615 3962 1.341187 ACCTCCTAGGAAGTCCTCGTG 60.341 57.143 13.77 0.00 44.77 4.35
2616 3963 1.001282 ACCTCCTAGGAAGTCCTCGT 58.999 55.000 13.77 0.00 44.77 4.18
2617 3964 1.064611 TGACCTCCTAGGAAGTCCTCG 60.065 57.143 29.70 10.80 44.77 4.63
2618 3965 2.380941 GTGACCTCCTAGGAAGTCCTC 58.619 57.143 29.70 21.09 44.77 3.71
2620 3967 1.487300 GGTGACCTCCTAGGAAGTCC 58.513 60.000 29.70 22.12 37.67 3.85
2634 3981 5.181622 CGAGAATAGTACTAGGATGGGTGAC 59.818 48.000 8.85 0.00 0.00 3.67
2635 3982 5.314529 CGAGAATAGTACTAGGATGGGTGA 58.685 45.833 8.85 0.00 0.00 4.02
2636 3983 4.082679 GCGAGAATAGTACTAGGATGGGTG 60.083 50.000 8.85 0.00 0.00 4.61
2637 3984 4.080687 GCGAGAATAGTACTAGGATGGGT 58.919 47.826 8.85 0.00 0.00 4.51
2638 3985 4.337145 AGCGAGAATAGTACTAGGATGGG 58.663 47.826 8.85 0.00 0.00 4.00
2639 3986 5.004448 TGAGCGAGAATAGTACTAGGATGG 58.996 45.833 8.85 0.00 0.00 3.51
2640 3987 6.561737 TTGAGCGAGAATAGTACTAGGATG 57.438 41.667 8.85 0.00 0.00 3.51
2641 3988 7.309499 CCATTTGAGCGAGAATAGTACTAGGAT 60.309 40.741 8.85 0.00 0.00 3.24
2642 3989 6.016192 CCATTTGAGCGAGAATAGTACTAGGA 60.016 42.308 8.85 0.00 0.00 2.94
2643 3990 6.153067 CCATTTGAGCGAGAATAGTACTAGG 58.847 44.000 8.85 0.00 0.00 3.02
2644 3991 6.153067 CCCATTTGAGCGAGAATAGTACTAG 58.847 44.000 8.85 0.00 0.00 2.57
2645 3992 5.597182 ACCCATTTGAGCGAGAATAGTACTA 59.403 40.000 4.77 4.77 0.00 1.82
2646 3993 4.406003 ACCCATTTGAGCGAGAATAGTACT 59.594 41.667 0.00 0.00 0.00 2.73
2647 3994 4.694339 ACCCATTTGAGCGAGAATAGTAC 58.306 43.478 0.00 0.00 0.00 2.73
2648 3995 5.353394 AACCCATTTGAGCGAGAATAGTA 57.647 39.130 0.00 0.00 0.00 1.82
2649 3996 3.914426 ACCCATTTGAGCGAGAATAGT 57.086 42.857 0.00 0.00 0.00 2.12
2650 3997 4.635765 TGAAACCCATTTGAGCGAGAATAG 59.364 41.667 0.00 0.00 0.00 1.73
2651 3998 4.584874 TGAAACCCATTTGAGCGAGAATA 58.415 39.130 0.00 0.00 0.00 1.75
2652 3999 3.420893 TGAAACCCATTTGAGCGAGAAT 58.579 40.909 0.00 0.00 0.00 2.40
2653 4000 2.857483 TGAAACCCATTTGAGCGAGAA 58.143 42.857 0.00 0.00 0.00 2.87
2654 4001 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
2655 4002 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
2656 4003 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
2657 4004 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03
2668 4015 4.770795 AGCCAGTCACATAGGTATGAAAC 58.229 43.478 3.96 2.16 37.15 2.78
2669 4016 5.661312 ACTAGCCAGTCACATAGGTATGAAA 59.339 40.000 3.96 0.00 37.15 2.69
2670 4017 5.208890 ACTAGCCAGTCACATAGGTATGAA 58.791 41.667 3.96 0.00 37.15 2.57
2671 4018 4.804597 ACTAGCCAGTCACATAGGTATGA 58.195 43.478 3.96 0.00 37.15 2.15
2672 4019 5.537300 AACTAGCCAGTCACATAGGTATG 57.463 43.478 0.00 0.00 35.32 2.39
2673 4020 6.561519 AAAACTAGCCAGTCACATAGGTAT 57.438 37.500 0.00 0.00 32.29 2.73
2674 4021 6.368779 AAAAACTAGCCAGTCACATAGGTA 57.631 37.500 0.00 0.00 32.29 3.08
2675 4022 4.910458 AAAACTAGCCAGTCACATAGGT 57.090 40.909 0.00 0.00 32.29 3.08
2676 4023 6.170506 TGTAAAAACTAGCCAGTCACATAGG 58.829 40.000 0.00 0.00 32.29 2.57
2677 4024 7.849804 ATGTAAAAACTAGCCAGTCACATAG 57.150 36.000 0.00 0.00 32.29 2.23
2678 4025 7.120579 CCAATGTAAAAACTAGCCAGTCACATA 59.879 37.037 0.00 0.00 32.29 2.29
2679 4026 6.071952 CCAATGTAAAAACTAGCCAGTCACAT 60.072 38.462 0.00 0.00 32.29 3.21
2680 4027 5.240623 CCAATGTAAAAACTAGCCAGTCACA 59.759 40.000 0.00 0.00 32.29 3.58
2681 4028 5.699839 CCAATGTAAAAACTAGCCAGTCAC 58.300 41.667 0.00 0.00 32.29 3.67
2682 4029 4.217550 GCCAATGTAAAAACTAGCCAGTCA 59.782 41.667 0.00 0.00 32.29 3.41
2683 4030 4.459337 AGCCAATGTAAAAACTAGCCAGTC 59.541 41.667 0.00 0.00 32.29 3.51
2684 4031 4.407365 AGCCAATGTAAAAACTAGCCAGT 58.593 39.130 0.00 0.00 36.19 4.00
2685 4032 4.437390 CGAGCCAATGTAAAAACTAGCCAG 60.437 45.833 0.00 0.00 0.00 4.85
2686 4033 3.438781 CGAGCCAATGTAAAAACTAGCCA 59.561 43.478 0.00 0.00 0.00 4.75
2687 4034 3.730963 GCGAGCCAATGTAAAAACTAGCC 60.731 47.826 0.00 0.00 0.00 3.93
2688 4035 3.426323 GCGAGCCAATGTAAAAACTAGC 58.574 45.455 0.00 0.00 0.00 3.42
2689 4036 3.438781 TGGCGAGCCAATGTAAAAACTAG 59.561 43.478 15.24 0.00 44.12 2.57
2690 4037 3.413327 TGGCGAGCCAATGTAAAAACTA 58.587 40.909 15.24 0.00 44.12 2.24
2691 4038 2.235016 TGGCGAGCCAATGTAAAAACT 58.765 42.857 15.24 0.00 44.12 2.66
2692 4039 2.715737 TGGCGAGCCAATGTAAAAAC 57.284 45.000 15.24 0.00 44.12 2.43
2705 4052 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
2706 4053 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
2707 4054 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
2708 4055 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
2709 4056 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
2710 4057 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
2711 4058 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
2712 4059 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
2713 4060 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
2714 4061 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
2715 4062 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
2716 4063 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
2717 4064 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
2718 4065 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
2719 4066 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
2720 4067 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
2721 4068 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
2722 4069 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
2723 4070 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
2724 4071 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
2725 4072 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
2726 4073 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
2727 4074 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
2728 4075 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
2729 4076 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
2730 4077 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
2731 4078 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
2740 4087 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
2741 4088 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
2742 4089 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
2743 4090 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
2759 4106 2.588620 ACTCCGCCTATGTCTTCTAGG 58.411 52.381 0.00 0.00 39.06 3.02
2760 4107 3.632604 TGAACTCCGCCTATGTCTTCTAG 59.367 47.826 0.00 0.00 0.00 2.43
2761 4108 3.628008 TGAACTCCGCCTATGTCTTCTA 58.372 45.455 0.00 0.00 0.00 2.10
2762 4109 2.457598 TGAACTCCGCCTATGTCTTCT 58.542 47.619 0.00 0.00 0.00 2.85
2763 4110 2.961526 TGAACTCCGCCTATGTCTTC 57.038 50.000 0.00 0.00 0.00 2.87
2764 4111 2.832129 TCTTGAACTCCGCCTATGTCTT 59.168 45.455 0.00 0.00 0.00 3.01
2765 4112 2.428890 CTCTTGAACTCCGCCTATGTCT 59.571 50.000 0.00 0.00 0.00 3.41
2766 4113 2.166664 ACTCTTGAACTCCGCCTATGTC 59.833 50.000 0.00 0.00 0.00 3.06
2767 4114 2.180276 ACTCTTGAACTCCGCCTATGT 58.820 47.619 0.00 0.00 0.00 2.29
2768 4115 2.932614 CAACTCTTGAACTCCGCCTATG 59.067 50.000 0.00 0.00 0.00 2.23
2769 4116 2.567615 ACAACTCTTGAACTCCGCCTAT 59.432 45.455 0.00 0.00 0.00 2.57
2770 4117 1.968493 ACAACTCTTGAACTCCGCCTA 59.032 47.619 0.00 0.00 0.00 3.93
2771 4118 0.759346 ACAACTCTTGAACTCCGCCT 59.241 50.000 0.00 0.00 0.00 5.52
2772 4119 1.149148 GACAACTCTTGAACTCCGCC 58.851 55.000 0.00 0.00 0.00 6.13
2773 4120 1.795286 CTGACAACTCTTGAACTCCGC 59.205 52.381 0.00 0.00 0.00 5.54
2774 4121 2.797156 CACTGACAACTCTTGAACTCCG 59.203 50.000 0.00 0.00 0.00 4.63
2775 4122 3.557595 CACACTGACAACTCTTGAACTCC 59.442 47.826 0.00 0.00 0.00 3.85
2776 4123 3.001736 GCACACTGACAACTCTTGAACTC 59.998 47.826 0.00 0.00 0.00 3.01
2777 4124 2.939103 GCACACTGACAACTCTTGAACT 59.061 45.455 0.00 0.00 0.00 3.01
2778 4125 2.677836 TGCACACTGACAACTCTTGAAC 59.322 45.455 0.00 0.00 0.00 3.18
2779 4126 2.984562 TGCACACTGACAACTCTTGAA 58.015 42.857 0.00 0.00 0.00 2.69
2780 4127 2.689553 TGCACACTGACAACTCTTGA 57.310 45.000 0.00 0.00 0.00 3.02
2781 4128 5.871524 ACTATATGCACACTGACAACTCTTG 59.128 40.000 0.00 0.00 0.00 3.02
2782 4129 6.042638 ACTATATGCACACTGACAACTCTT 57.957 37.500 0.00 0.00 0.00 2.85
2783 4130 5.667539 ACTATATGCACACTGACAACTCT 57.332 39.130 0.00 0.00 0.00 3.24
2784 4131 9.529325 TTATTACTATATGCACACTGACAACTC 57.471 33.333 0.00 0.00 0.00 3.01
2790 4137 9.489084 GGACAATTATTACTATATGCACACTGA 57.511 33.333 0.00 0.00 0.00 3.41
2891 4238 8.106247 TGTTCTGATTGTTATTTGACCTTACC 57.894 34.615 0.00 0.00 0.00 2.85
2924 4271 5.245531 CCTGGACTATTTTCTGTACTGCAA 58.754 41.667 0.00 0.00 0.00 4.08
3010 4359 2.768527 TCACAAATGCCCTGTCCAAAAA 59.231 40.909 0.00 0.00 0.00 1.94
3011 4360 2.392662 TCACAAATGCCCTGTCCAAAA 58.607 42.857 0.00 0.00 0.00 2.44
3023 4372 8.495949 ACAACTACTTAACGATCTTCACAAATG 58.504 33.333 0.00 0.00 0.00 2.32
3169 4518 7.607991 TCCTTCTTGTCCTGAAAAATACAGATC 59.392 37.037 0.00 0.00 37.54 2.75
3382 4732 3.933861 ATAGGCAAACCTCTGGTAAGG 57.066 47.619 0.00 0.00 46.34 2.69
3595 4959 8.273780 ACTAAATGGCTCAAGATGAAGTTAAG 57.726 34.615 0.00 0.00 0.00 1.85
3819 5194 9.791838 CAAGTTCTAGTTGAAAAACAAAAACAC 57.208 29.630 0.00 0.00 40.36 3.32
3977 5358 3.703052 CTCCTTCTTGGGCTGCAAAATAT 59.297 43.478 0.50 0.00 36.20 1.28
4052 5433 0.108615 CATTGCGGAGACCTCGTTCT 60.109 55.000 0.00 0.00 0.00 3.01
4053 5434 0.108804 TCATTGCGGAGACCTCGTTC 60.109 55.000 0.00 0.00 0.00 3.95
4054 5435 0.389948 GTCATTGCGGAGACCTCGTT 60.390 55.000 0.00 0.00 0.00 3.85
4519 5961 2.143122 CAACGCTTGAAAGACAGCCTA 58.857 47.619 0.00 0.00 0.00 3.93
4522 5964 0.040067 CCCAACGCTTGAAAGACAGC 60.040 55.000 0.00 0.00 0.00 4.40
4630 6072 4.160814 TCAAGCAGATTCATGGGGATTTTG 59.839 41.667 0.00 0.00 0.00 2.44
4725 6167 9.549509 CGAAAATTTTGTCGACCATATCTTTAA 57.450 29.630 14.12 0.00 39.64 1.52
4809 6251 4.163458 TGTTCCTCAACTGTGTAACCTCTT 59.837 41.667 0.00 0.00 34.36 2.85
5081 6523 6.266103 ACACTTGGTCTGTTCATGATCATTTT 59.734 34.615 5.16 0.00 0.00 1.82
5152 6594 5.102953 TGATGATTGAACTTACTCCCCAG 57.897 43.478 0.00 0.00 0.00 4.45
5523 6968 1.880027 GAGCATTGTTAATAGGCCCGG 59.120 52.381 0.00 0.00 0.00 5.73
5707 7156 3.610242 CGTGTTCTCATGTAGAGCTTCAC 59.390 47.826 0.00 0.00 44.35 3.18
5999 7452 4.380531 ACTTGTTCTGGACACACACATAG 58.619 43.478 0.00 0.00 38.18 2.23
6170 7688 5.710567 AGTGGGCTAAATTTTAGTGAAGACC 59.289 40.000 15.69 6.02 32.42 3.85
6183 7702 9.520515 CCATTTACATAATAGAGTGGGCTAAAT 57.479 33.333 0.00 0.00 0.00 1.40
6187 7706 5.073691 AGCCATTTACATAATAGAGTGGGCT 59.926 40.000 0.00 0.00 41.69 5.19
6188 7707 5.316987 AGCCATTTACATAATAGAGTGGGC 58.683 41.667 0.00 0.00 36.81 5.36
6200 7720 7.339212 TGCTGTACTCAAATTAGCCATTTACAT 59.661 33.333 0.00 0.00 32.90 2.29
6330 7864 4.039609 ACCGCTATTCATCATGATCAGTCA 59.960 41.667 4.86 0.00 39.04 3.41
6594 8132 9.316730 TGAAAAGAAATTTGAATGACTTGAAGG 57.683 29.630 0.00 0.00 0.00 3.46
6687 8234 8.631480 TTGATATCATTTGCTTCAGCTGATAT 57.369 30.769 19.04 16.33 43.23 1.63
6871 8420 5.163713 GGAATTCCTTCACTTGTATCACAGC 60.164 44.000 17.73 0.00 32.70 4.40
6913 8462 8.164733 TGTTGGAATTATAACCTAGTTGGACAA 58.835 33.333 0.00 0.00 39.71 3.18
6979 8535 4.976224 TGGAATGTTGCTCAGAATCATG 57.024 40.909 0.00 0.00 0.00 3.07
7147 8705 8.463930 TGAGATATTTTCAGTTTCTTTGGTGT 57.536 30.769 0.00 0.00 0.00 4.16
7310 8871 6.904498 TGCCGGTATTTCATATTATTTTCCG 58.096 36.000 1.90 0.00 35.02 4.30
7331 8966 3.467374 TGGTTGAACCAGAAAAATGCC 57.533 42.857 14.05 0.00 44.79 4.40
7522 9224 8.506437 TCAATATCAACAAAAAGAGTGCTACAG 58.494 33.333 0.00 0.00 0.00 2.74
7525 9227 7.121168 CCCTCAATATCAACAAAAAGAGTGCTA 59.879 37.037 0.00 0.00 0.00 3.49
7701 9403 8.024865 ACCAAAAACTCACAGTAAAGTACAAAC 58.975 33.333 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.