Multiple sequence alignment - TraesCS1B01G109200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G109200 chr1B 100.000 3527 0 0 1 3527 121015970 121012444 0.000000e+00 6514
1 TraesCS1B01G109200 chr1B 90.415 313 28 2 1 313 121036641 121036331 1.010000e-110 411
2 TraesCS1B01G109200 chr1B 90.820 305 28 0 1 305 356215093 356215397 3.650000e-110 409
3 TraesCS1B01G109200 chr1B 100.000 134 0 0 3790 3923 121012181 121012048 8.420000e-62 248
4 TraesCS1B01G109200 chr1D 91.641 2919 169 42 652 3527 77453712 77450826 0.000000e+00 3969
5 TraesCS1B01G109200 chr1D 91.503 306 25 1 1 305 209964161 209963856 1.690000e-113 420
6 TraesCS1B01G109200 chr1D 91.475 305 26 0 1 305 209973970 209973666 1.690000e-113 420
7 TraesCS1B01G109200 chr7A 93.535 2243 121 8 1011 3243 477185401 477183173 0.000000e+00 3317
8 TraesCS1B01G109200 chr7A 90.226 133 13 0 3790 3922 477182807 477182675 1.450000e-39 174
9 TraesCS1B01G109200 chr1A 93.800 2145 98 15 835 2970 108781304 108779186 0.000000e+00 3192
10 TraesCS1B01G109200 chr1A 88.919 370 35 6 3007 3372 108779198 108778831 5.980000e-123 451
11 TraesCS1B01G109200 chr1A 90.226 133 13 0 3791 3923 108778560 108778428 1.450000e-39 174
12 TraesCS1B01G109200 chr1A 88.276 145 12 5 689 828 108781488 108781344 6.740000e-38 169
13 TraesCS1B01G109200 chr2B 85.551 1578 180 31 1571 3115 757230787 757232349 0.000000e+00 1607
14 TraesCS1B01G109200 chr2B 82.967 1773 228 33 1304 3048 757535798 757537524 0.000000e+00 1533
15 TraesCS1B01G109200 chr2B 88.322 882 73 14 2337 3207 757390576 757391438 0.000000e+00 1031
16 TraesCS1B01G109200 chr2B 87.900 562 64 3 2171 2732 757078321 757078878 0.000000e+00 658
17 TraesCS1B01G109200 chr2B 84.000 300 39 3 1285 1575 757221810 757222109 2.980000e-71 279
18 TraesCS1B01G109200 chr2B 86.667 135 15 3 3790 3923 757566496 757566628 3.160000e-31 147
19 TraesCS1B01G109200 chr2B 89.216 102 10 1 996 1096 756713302 756713403 4.120000e-25 126
20 TraesCS1B01G109200 chr2B 84.800 125 14 2 3376 3496 757391467 757391590 1.910000e-23 121
21 TraesCS1B01G109200 chr2A 86.347 1333 153 16 1736 3048 750330538 750331861 0.000000e+00 1426
22 TraesCS1B01G109200 chr2A 86.824 1017 103 16 2362 3372 750190767 750189776 0.000000e+00 1107
23 TraesCS1B01G109200 chr2A 78.726 691 79 36 1411 2092 750193639 750193008 2.200000e-107 399
24 TraesCS1B01G109200 chr2A 86.765 136 14 2 3790 3922 750364850 750364984 8.780000e-32 148
25 TraesCS1B01G109200 chr7D 85.910 1022 108 10 2362 3372 498243302 498244298 0.000000e+00 1057
26 TraesCS1B01G109200 chr7D 85.938 448 40 11 2774 3207 498283935 498284373 1.280000e-124 457
27 TraesCS1B01G109200 chr2D 86.264 728 83 7 1831 2544 619311041 619311765 0.000000e+00 774
28 TraesCS1B01G109200 chr2D 82.385 545 78 14 1265 1797 619310505 619311043 3.570000e-125 459
29 TraesCS1B01G109200 chr2D 86.567 134 16 2 3790 3923 619312035 619312166 3.160000e-31 147
30 TraesCS1B01G109200 chr2D 87.273 110 9 2 3370 3475 619311841 619311949 1.910000e-23 121
31 TraesCS1B01G109200 chr5B 91.935 310 23 2 1 310 119876838 119877145 2.170000e-117 433
32 TraesCS1B01G109200 chr3B 91.586 309 26 0 2 310 610166585 610166893 1.010000e-115 427
33 TraesCS1B01G109200 chr3B 90.615 309 29 0 1 309 572405271 572404963 1.010000e-110 411
34 TraesCS1B01G109200 chr4B 90.820 305 28 0 1 305 601292210 601291906 3.650000e-110 409
35 TraesCS1B01G109200 chr4B 90.323 310 28 2 1 310 580877665 580877972 4.720000e-109 405


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G109200 chr1B 121012048 121015970 3922 True 3381.00 6514 100.00000 1 3923 2 chr1B.!!$R2 3922
1 TraesCS1B01G109200 chr1D 77450826 77453712 2886 True 3969.00 3969 91.64100 652 3527 1 chr1D.!!$R1 2875
2 TraesCS1B01G109200 chr7A 477182675 477185401 2726 True 1745.50 3317 91.88050 1011 3922 2 chr7A.!!$R1 2911
3 TraesCS1B01G109200 chr1A 108778428 108781488 3060 True 996.50 3192 90.30525 689 3923 4 chr1A.!!$R1 3234
4 TraesCS1B01G109200 chr2B 757230787 757232349 1562 False 1607.00 1607 85.55100 1571 3115 1 chr2B.!!$F4 1544
5 TraesCS1B01G109200 chr2B 757535798 757537524 1726 False 1533.00 1533 82.96700 1304 3048 1 chr2B.!!$F5 1744
6 TraesCS1B01G109200 chr2B 757078321 757078878 557 False 658.00 658 87.90000 2171 2732 1 chr2B.!!$F2 561
7 TraesCS1B01G109200 chr2B 757390576 757391590 1014 False 576.00 1031 86.56100 2337 3496 2 chr2B.!!$F7 1159
8 TraesCS1B01G109200 chr2A 750330538 750331861 1323 False 1426.00 1426 86.34700 1736 3048 1 chr2A.!!$F1 1312
9 TraesCS1B01G109200 chr2A 750189776 750193639 3863 True 753.00 1107 82.77500 1411 3372 2 chr2A.!!$R1 1961
10 TraesCS1B01G109200 chr7D 498243302 498244298 996 False 1057.00 1057 85.91000 2362 3372 1 chr7D.!!$F1 1010
11 TraesCS1B01G109200 chr2D 619310505 619312166 1661 False 375.25 774 85.62225 1265 3923 4 chr2D.!!$F1 2658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.104855 GCGCTACCCATCAGACATGA 59.895 55.000 0.00 0.00 40.50 3.07 F
236 237 0.107945 ATTTCGCCTCCTGACAGAGC 60.108 55.000 3.32 3.08 32.17 4.09 F
246 247 0.108472 CTGACAGAGCTGCATTCCGA 60.108 55.000 1.02 0.00 0.00 4.55 F
681 682 0.321671 TAGAGCCAACCAGACACAGC 59.678 55.000 0.00 0.00 0.00 4.40 F
941 985 0.391793 CGCCAGGAAGGAAGAAGGAC 60.392 60.000 0.00 0.00 41.22 3.85 F
942 986 0.693049 GCCAGGAAGGAAGAAGGACA 59.307 55.000 0.00 0.00 41.22 4.02 F
2122 2298 1.002544 AGCTAGGCACTGAACTTGACC 59.997 52.381 0.00 0.00 41.52 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1230 1293 0.391263 GGGCGACGTTGAAGGAGAAT 60.391 55.000 7.08 0.00 0.00 2.40 R
1980 2148 1.071542 TCCTTTGACATGCCGTTCTGA 59.928 47.619 0.00 0.00 0.00 3.27 R
2243 2420 2.789092 GCGTTCCATGAAGCTTCATTCG 60.789 50.000 34.17 30.73 45.13 3.34 R
2323 2507 1.283029 CCCTTCCTGCTTCCTCATCAA 59.717 52.381 0.00 0.00 0.00 2.57 R
2385 4767 1.287815 CAACCCTGCATGCACACAG 59.712 57.895 18.46 7.02 0.00 3.66 R
2703 5106 4.314121 GTGCAGAGTCATCCAATCTATCC 58.686 47.826 0.00 0.00 0.00 2.59 R
3323 5752 1.136141 GCATGTTCTGACAACTCGCAG 60.136 52.381 0.00 0.00 39.66 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.977427 GGTTTAAACTGGCTTCACCTTG 58.023 45.455 17.50 0.00 40.22 3.61
22 23 3.381045 GTTTAAACTGGCTTCACCTTGC 58.619 45.455 11.18 0.00 40.22 4.01
23 24 1.234821 TAAACTGGCTTCACCTTGCG 58.765 50.000 0.00 0.00 40.22 4.85
24 25 1.455383 AAACTGGCTTCACCTTGCGG 61.455 55.000 0.00 0.00 40.22 5.69
25 26 3.058160 CTGGCTTCACCTTGCGGG 61.058 66.667 0.00 0.00 40.22 6.13
53 54 5.838531 TTTGTGGTAGTAAACAACCTTGG 57.161 39.130 0.29 0.00 36.08 3.61
54 55 4.774660 TGTGGTAGTAAACAACCTTGGA 57.225 40.909 0.00 0.00 29.99 3.53
55 56 5.313280 TGTGGTAGTAAACAACCTTGGAT 57.687 39.130 0.00 0.00 29.99 3.41
56 57 5.067273 TGTGGTAGTAAACAACCTTGGATG 58.933 41.667 0.00 0.00 29.99 3.51
57 58 4.457949 GTGGTAGTAAACAACCTTGGATGG 59.542 45.833 2.14 0.00 0.00 3.51
58 59 4.351407 TGGTAGTAAACAACCTTGGATGGA 59.649 41.667 2.14 0.00 0.00 3.41
59 60 5.163077 TGGTAGTAAACAACCTTGGATGGAA 60.163 40.000 2.14 0.00 0.00 3.53
60 61 5.771165 GGTAGTAAACAACCTTGGATGGAAA 59.229 40.000 2.14 0.00 0.00 3.13
61 62 6.436218 GGTAGTAAACAACCTTGGATGGAAAT 59.564 38.462 2.14 0.00 0.00 2.17
62 63 6.345096 AGTAAACAACCTTGGATGGAAATG 57.655 37.500 2.14 0.00 0.00 2.32
63 64 6.074648 AGTAAACAACCTTGGATGGAAATGA 58.925 36.000 2.14 0.00 0.00 2.57
64 65 5.473066 AAACAACCTTGGATGGAAATGAG 57.527 39.130 2.14 0.00 0.00 2.90
65 66 4.118168 ACAACCTTGGATGGAAATGAGT 57.882 40.909 2.14 0.00 0.00 3.41
66 67 4.082125 ACAACCTTGGATGGAAATGAGTC 58.918 43.478 2.14 0.00 0.00 3.36
67 68 3.372440 ACCTTGGATGGAAATGAGTCC 57.628 47.619 0.00 0.00 38.27 3.85
77 78 5.138125 TGGAAATGAGTCCAAAAGCAATC 57.862 39.130 0.00 0.00 44.91 2.67
78 79 4.834496 TGGAAATGAGTCCAAAAGCAATCT 59.166 37.500 0.00 0.00 44.91 2.40
79 80 5.305128 TGGAAATGAGTCCAAAAGCAATCTT 59.695 36.000 0.00 0.00 44.91 2.40
80 81 5.636543 GGAAATGAGTCCAAAAGCAATCTTG 59.363 40.000 0.00 0.00 37.65 3.02
81 82 4.796038 ATGAGTCCAAAAGCAATCTTGG 57.204 40.909 0.00 0.00 43.00 3.61
82 83 2.297033 TGAGTCCAAAAGCAATCTTGGC 59.703 45.455 0.00 0.00 41.65 4.52
83 84 1.620323 AGTCCAAAAGCAATCTTGGCC 59.380 47.619 0.00 0.00 41.65 5.36
84 85 1.620323 GTCCAAAAGCAATCTTGGCCT 59.380 47.619 3.32 0.00 41.65 5.19
85 86 2.037641 GTCCAAAAGCAATCTTGGCCTT 59.962 45.455 3.32 0.00 41.65 4.35
86 87 2.705127 TCCAAAAGCAATCTTGGCCTTT 59.295 40.909 3.32 0.00 41.65 3.11
87 88 3.136260 TCCAAAAGCAATCTTGGCCTTTT 59.864 39.130 3.32 0.00 41.65 2.27
88 89 3.499537 CCAAAAGCAATCTTGGCCTTTTC 59.500 43.478 3.32 0.00 35.97 2.29
89 90 2.730550 AAGCAATCTTGGCCTTTTCG 57.269 45.000 3.32 0.00 0.00 3.46
90 91 1.909700 AGCAATCTTGGCCTTTTCGA 58.090 45.000 3.32 0.00 0.00 3.71
91 92 2.450476 AGCAATCTTGGCCTTTTCGAT 58.550 42.857 3.32 0.00 0.00 3.59
92 93 2.165030 AGCAATCTTGGCCTTTTCGATG 59.835 45.455 3.32 0.00 0.00 3.84
93 94 2.164219 GCAATCTTGGCCTTTTCGATGA 59.836 45.455 3.32 0.00 0.00 2.92
94 95 3.733077 GCAATCTTGGCCTTTTCGATGAG 60.733 47.826 3.32 0.00 0.00 2.90
95 96 3.634397 ATCTTGGCCTTTTCGATGAGA 57.366 42.857 3.32 0.00 0.00 3.27
96 97 2.699954 TCTTGGCCTTTTCGATGAGAC 58.300 47.619 3.32 0.00 0.00 3.36
97 98 1.394917 CTTGGCCTTTTCGATGAGACG 59.605 52.381 3.32 0.00 0.00 4.18
98 99 0.606096 TGGCCTTTTCGATGAGACGA 59.394 50.000 3.32 0.00 40.55 4.20
107 108 4.966850 TTCGATGAGACGAACAACTTTC 57.033 40.909 0.00 0.00 45.21 2.62
108 109 3.972403 TCGATGAGACGAACAACTTTCA 58.028 40.909 0.00 0.00 39.34 2.69
109 110 4.556233 TCGATGAGACGAACAACTTTCAT 58.444 39.130 0.00 0.00 39.34 2.57
110 111 4.385748 TCGATGAGACGAACAACTTTCATG 59.614 41.667 0.00 0.00 39.34 3.07
111 112 4.150627 CGATGAGACGAACAACTTTCATGT 59.849 41.667 0.00 0.00 35.09 3.21
112 113 5.333339 CGATGAGACGAACAACTTTCATGTT 60.333 40.000 0.00 0.00 43.37 2.71
113 114 7.311118 CGATGAGACGAACAACTTTCATGTTG 61.311 42.308 5.92 5.92 40.90 3.33
114 115 9.347939 CGATGAGACGAACAACTTTCATGTTGA 62.348 40.741 13.31 0.00 40.90 3.18
119 120 4.791163 CGAACAACTTTCATGTTGAACGTT 59.209 37.500 0.00 0.00 45.68 3.99
120 121 5.285134 CGAACAACTTTCATGTTGAACGTTT 59.715 36.000 13.31 0.00 43.39 3.60
121 122 6.183359 CGAACAACTTTCATGTTGAACGTTTT 60.183 34.615 13.31 7.56 43.39 2.43
122 123 7.414814 AACAACTTTCATGTTGAACGTTTTT 57.585 28.000 13.31 7.10 43.39 1.94
144 145 7.870509 TTTTAATCAGAGGTCATCTTGATGG 57.129 36.000 10.29 0.00 35.47 3.51
145 146 6.566079 TTAATCAGAGGTCATCTTGATGGT 57.434 37.500 10.29 0.00 35.47 3.55
146 147 4.686191 ATCAGAGGTCATCTTGATGGTC 57.314 45.455 10.29 5.84 35.47 4.02
147 148 3.444029 TCAGAGGTCATCTTGATGGTCA 58.556 45.455 10.29 0.00 35.47 4.02
148 149 3.840078 TCAGAGGTCATCTTGATGGTCAA 59.160 43.478 10.29 0.00 35.47 3.18
149 150 4.286808 TCAGAGGTCATCTTGATGGTCAAA 59.713 41.667 10.29 0.00 35.73 2.69
150 151 5.045359 TCAGAGGTCATCTTGATGGTCAAAT 60.045 40.000 10.29 0.00 35.73 2.32
151 152 6.156775 TCAGAGGTCATCTTGATGGTCAAATA 59.843 38.462 10.29 0.00 35.73 1.40
152 153 6.482641 CAGAGGTCATCTTGATGGTCAAATAG 59.517 42.308 10.29 0.00 35.73 1.73
153 154 5.128919 AGGTCATCTTGATGGTCAAATAGC 58.871 41.667 10.29 0.37 35.73 2.97
154 155 5.104193 AGGTCATCTTGATGGTCAAATAGCT 60.104 40.000 10.29 0.00 35.73 3.32
155 156 5.238214 GGTCATCTTGATGGTCAAATAGCTC 59.762 44.000 10.29 0.00 35.73 4.09
156 157 5.050499 GTCATCTTGATGGTCAAATAGCTCG 60.050 44.000 10.29 0.00 35.73 5.03
157 158 3.198068 TCTTGATGGTCAAATAGCTCGC 58.802 45.455 0.00 0.00 35.73 5.03
158 159 1.570813 TGATGGTCAAATAGCTCGCG 58.429 50.000 0.00 0.00 0.00 5.87
159 160 0.233332 GATGGTCAAATAGCTCGCGC 59.767 55.000 0.00 0.00 0.00 6.86
160 161 0.461870 ATGGTCAAATAGCTCGCGCA 60.462 50.000 8.75 0.00 39.10 6.09
161 162 0.672091 TGGTCAAATAGCTCGCGCAA 60.672 50.000 8.75 0.00 39.10 4.85
162 163 0.446222 GGTCAAATAGCTCGCGCAAA 59.554 50.000 8.75 0.00 39.10 3.68
163 164 1.135803 GGTCAAATAGCTCGCGCAAAA 60.136 47.619 8.75 0.00 39.10 2.44
164 165 2.477863 GGTCAAATAGCTCGCGCAAAAT 60.478 45.455 8.75 0.00 39.10 1.82
165 166 3.242608 GGTCAAATAGCTCGCGCAAAATA 60.243 43.478 8.75 0.00 39.10 1.40
166 167 4.527564 GTCAAATAGCTCGCGCAAAATAT 58.472 39.130 8.75 0.00 39.10 1.28
167 168 4.608882 GTCAAATAGCTCGCGCAAAATATC 59.391 41.667 8.75 0.00 39.10 1.63
168 169 4.511454 TCAAATAGCTCGCGCAAAATATCT 59.489 37.500 8.75 0.00 39.10 1.98
169 170 4.395581 AATAGCTCGCGCAAAATATCTG 57.604 40.909 8.75 0.00 39.10 2.90
170 171 1.656652 AGCTCGCGCAAAATATCTGT 58.343 45.000 8.75 0.00 39.10 3.41
171 172 2.009774 AGCTCGCGCAAAATATCTGTT 58.990 42.857 8.75 0.00 39.10 3.16
172 173 2.420022 AGCTCGCGCAAAATATCTGTTT 59.580 40.909 8.75 0.00 39.10 2.83
173 174 2.527487 GCTCGCGCAAAATATCTGTTTG 59.473 45.455 8.75 0.00 38.69 2.93
180 181 2.458592 AAATATCTGTTTGCTCGCGC 57.541 45.000 0.00 0.00 0.00 6.86
181 182 1.656652 AATATCTGTTTGCTCGCGCT 58.343 45.000 5.56 0.00 36.97 5.92
182 183 2.509052 ATATCTGTTTGCTCGCGCTA 57.491 45.000 5.56 0.00 36.97 4.26
183 184 1.556564 TATCTGTTTGCTCGCGCTAC 58.443 50.000 5.56 0.00 36.97 3.58
184 185 1.084370 ATCTGTTTGCTCGCGCTACC 61.084 55.000 5.56 0.00 36.97 3.18
185 186 2.740714 CTGTTTGCTCGCGCTACCC 61.741 63.158 5.56 0.00 36.97 3.69
186 187 2.740826 GTTTGCTCGCGCTACCCA 60.741 61.111 5.56 0.00 36.97 4.51
187 188 2.106683 GTTTGCTCGCGCTACCCAT 61.107 57.895 5.56 0.00 36.97 4.00
188 189 1.813753 TTTGCTCGCGCTACCCATC 60.814 57.895 5.56 0.00 36.97 3.51
189 190 2.514510 TTTGCTCGCGCTACCCATCA 62.515 55.000 5.56 0.00 36.97 3.07
190 191 2.659897 GCTCGCGCTACCCATCAG 60.660 66.667 5.56 0.00 0.00 2.90
191 192 3.120105 CTCGCGCTACCCATCAGA 58.880 61.111 5.56 0.00 0.00 3.27
192 193 1.299468 CTCGCGCTACCCATCAGAC 60.299 63.158 5.56 0.00 0.00 3.51
193 194 2.004808 CTCGCGCTACCCATCAGACA 62.005 60.000 5.56 0.00 0.00 3.41
194 195 1.068083 CGCGCTACCCATCAGACAT 59.932 57.895 5.56 0.00 0.00 3.06
195 196 1.217585 CGCGCTACCCATCAGACATG 61.218 60.000 5.56 0.00 0.00 3.21
196 197 0.104855 GCGCTACCCATCAGACATGA 59.895 55.000 0.00 0.00 40.50 3.07
197 198 1.858091 CGCTACCCATCAGACATGAC 58.142 55.000 0.00 0.00 38.57 3.06
198 199 1.858091 GCTACCCATCAGACATGACG 58.142 55.000 0.00 0.00 38.57 4.35
199 200 1.137086 GCTACCCATCAGACATGACGT 59.863 52.381 0.00 0.00 38.57 4.34
200 201 2.799917 GCTACCCATCAGACATGACGTC 60.800 54.545 9.11 9.11 45.77 4.34
207 208 4.598257 GACATGACGTCTGGTGGG 57.402 61.111 17.92 2.45 41.81 4.61
208 209 1.079127 GACATGACGTCTGGTGGGG 60.079 63.158 17.92 1.06 41.81 4.96
209 210 2.436646 CATGACGTCTGGTGGGGC 60.437 66.667 17.92 0.00 0.00 5.80
210 211 4.082523 ATGACGTCTGGTGGGGCG 62.083 66.667 17.92 0.00 0.00 6.13
220 221 3.216292 GTGGGGCGCGCCATATTT 61.216 61.111 46.88 0.00 37.98 1.40
221 222 2.904866 TGGGGCGCGCCATATTTC 60.905 61.111 46.88 30.07 37.98 2.17
222 223 4.025401 GGGGCGCGCCATATTTCG 62.025 66.667 46.88 0.00 37.98 3.46
223 224 4.683334 GGGCGCGCCATATTTCGC 62.683 66.667 46.88 26.19 46.98 4.70
227 228 2.946762 GCGCCATATTTCGCCTCC 59.053 61.111 0.00 0.00 45.01 4.30
228 229 1.598130 GCGCCATATTTCGCCTCCT 60.598 57.895 0.00 0.00 45.01 3.69
229 230 1.845809 GCGCCATATTTCGCCTCCTG 61.846 60.000 0.00 0.00 45.01 3.86
230 231 0.249868 CGCCATATTTCGCCTCCTGA 60.250 55.000 0.00 0.00 0.00 3.86
231 232 1.230324 GCCATATTTCGCCTCCTGAC 58.770 55.000 0.00 0.00 0.00 3.51
232 233 1.475034 GCCATATTTCGCCTCCTGACA 60.475 52.381 0.00 0.00 0.00 3.58
233 234 2.487934 CCATATTTCGCCTCCTGACAG 58.512 52.381 0.00 0.00 0.00 3.51
234 235 2.103094 CCATATTTCGCCTCCTGACAGA 59.897 50.000 3.32 0.00 0.00 3.41
235 236 3.388308 CATATTTCGCCTCCTGACAGAG 58.612 50.000 3.32 0.00 0.00 3.35
236 237 0.107945 ATTTCGCCTCCTGACAGAGC 60.108 55.000 3.32 3.08 32.17 4.09
237 238 1.188219 TTTCGCCTCCTGACAGAGCT 61.188 55.000 3.32 0.00 32.17 4.09
238 239 1.881903 TTCGCCTCCTGACAGAGCTG 61.882 60.000 3.32 0.00 32.17 4.24
239 240 2.125188 GCCTCCTGACAGAGCTGC 60.125 66.667 3.32 0.00 32.17 5.25
240 241 2.952293 GCCTCCTGACAGAGCTGCA 61.952 63.158 3.32 0.00 32.17 4.41
241 242 1.906253 CCTCCTGACAGAGCTGCAT 59.094 57.895 3.32 0.00 32.17 3.96
242 243 0.252479 CCTCCTGACAGAGCTGCATT 59.748 55.000 3.32 0.00 32.17 3.56
243 244 1.654317 CTCCTGACAGAGCTGCATTC 58.346 55.000 3.32 0.00 0.00 2.67
244 245 0.251354 TCCTGACAGAGCTGCATTCC 59.749 55.000 3.32 0.00 0.00 3.01
245 246 1.088340 CCTGACAGAGCTGCATTCCG 61.088 60.000 3.32 0.00 0.00 4.30
246 247 0.108472 CTGACAGAGCTGCATTCCGA 60.108 55.000 1.02 0.00 0.00 4.55
247 248 0.538584 TGACAGAGCTGCATTCCGAT 59.461 50.000 1.02 0.00 0.00 4.18
248 249 1.756538 TGACAGAGCTGCATTCCGATA 59.243 47.619 1.02 0.00 0.00 2.92
249 250 2.223900 TGACAGAGCTGCATTCCGATAG 60.224 50.000 1.02 0.00 0.00 2.08
250 251 1.146637 CAGAGCTGCATTCCGATAGC 58.853 55.000 1.02 0.00 36.45 2.97
252 253 3.603144 AGCTGCATTCCGATAGCTC 57.397 52.632 1.02 0.00 42.45 4.09
253 254 1.047002 AGCTGCATTCCGATAGCTCT 58.953 50.000 1.02 0.00 42.45 4.09
254 255 2.242926 AGCTGCATTCCGATAGCTCTA 58.757 47.619 1.02 0.00 42.45 2.43
255 256 2.630098 AGCTGCATTCCGATAGCTCTAA 59.370 45.455 1.02 0.00 42.45 2.10
256 257 2.734079 GCTGCATTCCGATAGCTCTAAC 59.266 50.000 0.00 0.00 33.53 2.34
257 258 3.553922 GCTGCATTCCGATAGCTCTAACT 60.554 47.826 0.00 0.00 33.53 2.24
258 259 4.626042 CTGCATTCCGATAGCTCTAACTT 58.374 43.478 0.00 0.00 0.00 2.66
259 260 5.023533 TGCATTCCGATAGCTCTAACTTT 57.976 39.130 0.00 0.00 0.00 2.66
260 261 5.428253 TGCATTCCGATAGCTCTAACTTTT 58.572 37.500 0.00 0.00 0.00 2.27
261 262 5.294306 TGCATTCCGATAGCTCTAACTTTTG 59.706 40.000 0.00 0.00 0.00 2.44
262 263 5.742446 CATTCCGATAGCTCTAACTTTTGC 58.258 41.667 0.00 0.00 0.00 3.68
263 264 4.465632 TCCGATAGCTCTAACTTTTGCA 57.534 40.909 0.00 0.00 0.00 4.08
264 265 5.023533 TCCGATAGCTCTAACTTTTGCAT 57.976 39.130 0.00 0.00 0.00 3.96
265 266 6.156748 TCCGATAGCTCTAACTTTTGCATA 57.843 37.500 0.00 0.00 0.00 3.14
266 267 5.983720 TCCGATAGCTCTAACTTTTGCATAC 59.016 40.000 0.00 0.00 0.00 2.39
267 268 5.107837 CCGATAGCTCTAACTTTTGCATACG 60.108 44.000 0.00 0.00 0.00 3.06
268 269 5.685954 CGATAGCTCTAACTTTTGCATACGA 59.314 40.000 0.00 0.00 0.00 3.43
269 270 6.198403 CGATAGCTCTAACTTTTGCATACGAA 59.802 38.462 0.00 0.00 0.00 3.85
270 271 7.096023 CGATAGCTCTAACTTTTGCATACGAAT 60.096 37.037 0.00 0.00 0.00 3.34
271 272 6.743575 AGCTCTAACTTTTGCATACGAATT 57.256 33.333 0.00 0.00 0.00 2.17
272 273 7.145932 AGCTCTAACTTTTGCATACGAATTT 57.854 32.000 0.00 0.00 0.00 1.82
273 274 7.023575 AGCTCTAACTTTTGCATACGAATTTG 58.976 34.615 0.00 0.00 0.00 2.32
274 275 6.251376 GCTCTAACTTTTGCATACGAATTTGG 59.749 38.462 0.00 0.00 0.00 3.28
275 276 7.441890 TCTAACTTTTGCATACGAATTTGGA 57.558 32.000 0.00 0.00 0.00 3.53
276 277 8.050778 TCTAACTTTTGCATACGAATTTGGAT 57.949 30.769 0.00 0.00 0.00 3.41
277 278 8.519526 TCTAACTTTTGCATACGAATTTGGATT 58.480 29.630 0.00 0.00 0.00 3.01
278 279 6.949578 ACTTTTGCATACGAATTTGGATTG 57.050 33.333 0.00 0.00 0.00 2.67
279 280 6.686630 ACTTTTGCATACGAATTTGGATTGA 58.313 32.000 0.00 0.00 0.00 2.57
280 281 6.808212 ACTTTTGCATACGAATTTGGATTGAG 59.192 34.615 0.00 0.00 0.00 3.02
281 282 6.507958 TTTGCATACGAATTTGGATTGAGA 57.492 33.333 0.00 0.00 0.00 3.27
282 283 6.698008 TTGCATACGAATTTGGATTGAGAT 57.302 33.333 0.00 0.00 0.00 2.75
283 284 7.800155 TTGCATACGAATTTGGATTGAGATA 57.200 32.000 0.00 0.00 0.00 1.98
284 285 7.800155 TGCATACGAATTTGGATTGAGATAA 57.200 32.000 0.00 0.00 0.00 1.75
285 286 8.394971 TGCATACGAATTTGGATTGAGATAAT 57.605 30.769 0.00 0.00 0.00 1.28
286 287 8.849168 TGCATACGAATTTGGATTGAGATAATT 58.151 29.630 0.00 0.00 0.00 1.40
287 288 9.683069 GCATACGAATTTGGATTGAGATAATTT 57.317 29.630 0.00 0.00 0.00 1.82
344 345 9.923143 TCAACGATCTCTTAAATAAAGACTTCA 57.077 29.630 0.00 0.00 39.36 3.02
395 396 9.799106 ACTTGAATATATTAGGATGGAACTTGG 57.201 33.333 0.00 0.00 0.00 3.61
396 397 9.799106 CTTGAATATATTAGGATGGAACTTGGT 57.201 33.333 0.00 0.00 0.00 3.67
399 400 9.384764 GAATATATTAGGATGGAACTTGGTAGC 57.615 37.037 0.00 0.00 0.00 3.58
400 401 6.763715 ATATTAGGATGGAACTTGGTAGCA 57.236 37.500 0.00 0.00 0.00 3.49
401 402 5.653255 ATTAGGATGGAACTTGGTAGCAT 57.347 39.130 0.00 0.00 0.00 3.79
402 403 3.567478 AGGATGGAACTTGGTAGCATC 57.433 47.619 0.00 0.00 0.00 3.91
403 404 2.846206 AGGATGGAACTTGGTAGCATCA 59.154 45.455 0.00 0.00 0.00 3.07
404 405 3.461085 AGGATGGAACTTGGTAGCATCAT 59.539 43.478 0.00 0.00 0.00 2.45
405 406 4.660303 AGGATGGAACTTGGTAGCATCATA 59.340 41.667 0.00 0.00 0.00 2.15
406 407 4.999950 GGATGGAACTTGGTAGCATCATAG 59.000 45.833 0.00 0.00 0.00 2.23
407 408 4.422073 TGGAACTTGGTAGCATCATAGG 57.578 45.455 0.00 0.00 0.00 2.57
408 409 4.037222 TGGAACTTGGTAGCATCATAGGA 58.963 43.478 0.00 0.00 0.00 2.94
409 410 4.660303 TGGAACTTGGTAGCATCATAGGAT 59.340 41.667 0.00 0.00 0.00 3.24
410 411 5.843969 TGGAACTTGGTAGCATCATAGGATA 59.156 40.000 0.00 0.00 30.87 2.59
411 412 6.014242 TGGAACTTGGTAGCATCATAGGATAG 60.014 42.308 0.00 0.00 30.87 2.08
412 413 6.211584 GGAACTTGGTAGCATCATAGGATAGA 59.788 42.308 0.00 0.00 30.87 1.98
413 414 7.256332 GGAACTTGGTAGCATCATAGGATAGAA 60.256 40.741 0.00 0.00 30.87 2.10
414 415 7.618019 ACTTGGTAGCATCATAGGATAGAAA 57.382 36.000 0.00 0.00 30.87 2.52
415 416 7.675062 ACTTGGTAGCATCATAGGATAGAAAG 58.325 38.462 0.00 0.00 30.87 2.62
416 417 6.042638 TGGTAGCATCATAGGATAGAAAGC 57.957 41.667 0.00 0.00 30.87 3.51
417 418 5.782331 TGGTAGCATCATAGGATAGAAAGCT 59.218 40.000 4.80 4.80 34.80 3.74
418 419 6.270927 TGGTAGCATCATAGGATAGAAAGCTT 59.729 38.462 4.74 0.00 33.31 3.74
419 420 7.454694 TGGTAGCATCATAGGATAGAAAGCTTA 59.545 37.037 0.00 0.00 33.31 3.09
420 421 7.762159 GGTAGCATCATAGGATAGAAAGCTTAC 59.238 40.741 0.00 2.73 33.31 2.34
421 422 7.552050 AGCATCATAGGATAGAAAGCTTACT 57.448 36.000 0.00 0.00 30.87 2.24
422 423 8.657387 AGCATCATAGGATAGAAAGCTTACTA 57.343 34.615 0.00 0.00 30.87 1.82
423 424 9.265862 AGCATCATAGGATAGAAAGCTTACTAT 57.734 33.333 0.00 0.00 30.87 2.12
424 425 9.311916 GCATCATAGGATAGAAAGCTTACTATG 57.688 37.037 0.00 3.69 30.87 2.23
425 426 9.311916 CATCATAGGATAGAAAGCTTACTATGC 57.688 37.037 9.04 0.00 37.58 3.14
426 427 8.657387 TCATAGGATAGAAAGCTTACTATGCT 57.343 34.615 9.04 0.00 45.04 3.79
427 428 8.526978 TCATAGGATAGAAAGCTTACTATGCTG 58.473 37.037 14.91 4.45 43.69 4.41
428 429 5.546526 AGGATAGAAAGCTTACTATGCTGC 58.453 41.667 0.00 0.00 42.83 5.25
429 430 5.306678 AGGATAGAAAGCTTACTATGCTGCT 59.693 40.000 0.00 2.29 42.83 4.24
430 431 6.495181 AGGATAGAAAGCTTACTATGCTGCTA 59.505 38.462 0.00 4.09 42.83 3.49
431 432 6.588373 GGATAGAAAGCTTACTATGCTGCTAC 59.412 42.308 0.00 0.00 41.03 3.58
432 433 5.606348 AGAAAGCTTACTATGCTGCTACT 57.394 39.130 0.00 0.00 41.03 2.57
433 434 5.983540 AGAAAGCTTACTATGCTGCTACTT 58.016 37.500 0.00 0.00 41.03 2.24
434 435 7.113658 AGAAAGCTTACTATGCTGCTACTTA 57.886 36.000 0.00 0.00 41.03 2.24
435 436 7.556844 AGAAAGCTTACTATGCTGCTACTTAA 58.443 34.615 0.00 0.00 41.03 1.85
436 437 8.207545 AGAAAGCTTACTATGCTGCTACTTAAT 58.792 33.333 0.00 0.00 41.03 1.40
437 438 8.738645 AAAGCTTACTATGCTGCTACTTAATT 57.261 30.769 0.00 0.00 41.03 1.40
438 439 7.721286 AGCTTACTATGCTGCTACTTAATTG 57.279 36.000 0.00 0.00 39.56 2.32
439 440 6.708054 AGCTTACTATGCTGCTACTTAATTGG 59.292 38.462 0.00 0.00 39.56 3.16
440 441 6.483640 GCTTACTATGCTGCTACTTAATTGGT 59.516 38.462 0.00 0.00 0.00 3.67
441 442 7.307455 GCTTACTATGCTGCTACTTAATTGGTC 60.307 40.741 0.00 0.00 0.00 4.02
442 443 5.368989 ACTATGCTGCTACTTAATTGGTCC 58.631 41.667 0.00 0.00 0.00 4.46
443 444 3.712016 TGCTGCTACTTAATTGGTCCA 57.288 42.857 0.00 0.00 0.00 4.02
444 445 4.027674 TGCTGCTACTTAATTGGTCCAA 57.972 40.909 6.80 6.80 0.00 3.53
445 446 4.599041 TGCTGCTACTTAATTGGTCCAAT 58.401 39.130 11.59 11.59 35.39 3.16
446 447 5.016173 TGCTGCTACTTAATTGGTCCAATT 58.984 37.500 28.49 28.49 44.74 2.32
447 448 5.480073 TGCTGCTACTTAATTGGTCCAATTT 59.520 36.000 30.15 17.54 40.60 1.82
448 449 6.036470 GCTGCTACTTAATTGGTCCAATTTC 58.964 40.000 30.15 15.07 40.60 2.17
449 450 6.127619 GCTGCTACTTAATTGGTCCAATTTCT 60.128 38.462 30.15 17.01 40.60 2.52
450 451 7.067008 GCTGCTACTTAATTGGTCCAATTTCTA 59.933 37.037 30.15 13.57 40.60 2.10
451 452 9.125026 CTGCTACTTAATTGGTCCAATTTCTAT 57.875 33.333 30.15 17.57 40.60 1.98
457 458 9.683069 CTTAATTGGTCCAATTTCTATATGTGC 57.317 33.333 30.15 0.00 40.60 4.57
458 459 7.902920 AATTGGTCCAATTTCTATATGTGCT 57.097 32.000 22.00 0.00 40.60 4.40
459 460 6.942532 TTGGTCCAATTTCTATATGTGCTC 57.057 37.500 0.00 0.00 0.00 4.26
460 461 5.056480 TGGTCCAATTTCTATATGTGCTCG 58.944 41.667 0.00 0.00 0.00 5.03
461 462 4.083802 GGTCCAATTTCTATATGTGCTCGC 60.084 45.833 0.00 0.00 0.00 5.03
462 463 4.511454 GTCCAATTTCTATATGTGCTCGCA 59.489 41.667 0.00 0.00 0.00 5.10
463 464 4.511454 TCCAATTTCTATATGTGCTCGCAC 59.489 41.667 14.75 14.75 46.33 5.34
475 476 3.430931 GTGCTCGCACAAAACTTAAACA 58.569 40.909 16.52 0.00 45.53 2.83
476 477 3.854809 GTGCTCGCACAAAACTTAAACAA 59.145 39.130 16.52 0.00 45.53 2.83
477 478 3.854809 TGCTCGCACAAAACTTAAACAAC 59.145 39.130 0.00 0.00 0.00 3.32
478 479 3.242016 GCTCGCACAAAACTTAAACAACC 59.758 43.478 0.00 0.00 0.00 3.77
479 480 4.416620 CTCGCACAAAACTTAAACAACCA 58.583 39.130 0.00 0.00 0.00 3.67
480 481 5.000012 TCGCACAAAACTTAAACAACCAT 58.000 34.783 0.00 0.00 0.00 3.55
481 482 6.132791 TCGCACAAAACTTAAACAACCATA 57.867 33.333 0.00 0.00 0.00 2.74
482 483 5.972382 TCGCACAAAACTTAAACAACCATAC 59.028 36.000 0.00 0.00 0.00 2.39
483 484 5.744345 CGCACAAAACTTAAACAACCATACA 59.256 36.000 0.00 0.00 0.00 2.29
484 485 6.291374 CGCACAAAACTTAAACAACCATACAC 60.291 38.462 0.00 0.00 0.00 2.90
485 486 6.291374 GCACAAAACTTAAACAACCATACACG 60.291 38.462 0.00 0.00 0.00 4.49
486 487 6.748198 CACAAAACTTAAACAACCATACACGT 59.252 34.615 0.00 0.00 0.00 4.49
487 488 7.273815 CACAAAACTTAAACAACCATACACGTT 59.726 33.333 0.00 0.00 0.00 3.99
488 489 7.813627 ACAAAACTTAAACAACCATACACGTTT 59.186 29.630 0.00 0.00 35.79 3.60
489 490 9.286946 CAAAACTTAAACAACCATACACGTTTA 57.713 29.630 0.00 0.00 33.79 2.01
493 494 9.709495 ACTTAAACAACCATACACGTTTATAGA 57.291 29.630 0.00 0.00 34.70 1.98
495 496 6.657836 AACAACCATACACGTTTATAGAGC 57.342 37.500 0.00 0.00 0.00 4.09
496 497 5.974108 ACAACCATACACGTTTATAGAGCT 58.026 37.500 0.00 0.00 0.00 4.09
497 498 7.104043 ACAACCATACACGTTTATAGAGCTA 57.896 36.000 0.00 0.00 0.00 3.32
498 499 7.549839 ACAACCATACACGTTTATAGAGCTAA 58.450 34.615 0.00 0.00 0.00 3.09
499 500 7.705325 ACAACCATACACGTTTATAGAGCTAAG 59.295 37.037 0.00 0.00 0.00 2.18
500 501 6.746120 ACCATACACGTTTATAGAGCTAAGG 58.254 40.000 0.00 0.00 0.00 2.69
501 502 5.634020 CCATACACGTTTATAGAGCTAAGGC 59.366 44.000 0.00 0.00 39.06 4.35
502 503 4.730949 ACACGTTTATAGAGCTAAGGCA 57.269 40.909 0.00 0.00 41.70 4.75
503 504 4.430908 ACACGTTTATAGAGCTAAGGCAC 58.569 43.478 0.00 0.00 41.70 5.01
504 505 3.486108 CACGTTTATAGAGCTAAGGCACG 59.514 47.826 0.00 0.00 41.70 5.34
505 506 3.379372 ACGTTTATAGAGCTAAGGCACGA 59.621 43.478 9.91 0.00 41.70 4.35
506 507 4.037684 ACGTTTATAGAGCTAAGGCACGAT 59.962 41.667 9.91 0.00 41.70 3.73
507 508 4.617645 CGTTTATAGAGCTAAGGCACGATC 59.382 45.833 0.00 0.00 41.70 3.69
508 509 5.529791 GTTTATAGAGCTAAGGCACGATCA 58.470 41.667 0.00 0.00 41.70 2.92
509 510 3.932545 ATAGAGCTAAGGCACGATCAG 57.067 47.619 0.00 0.00 41.70 2.90
510 511 0.749649 AGAGCTAAGGCACGATCAGG 59.250 55.000 0.00 0.00 41.70 3.86
511 512 0.461961 GAGCTAAGGCACGATCAGGT 59.538 55.000 0.00 0.00 41.70 4.00
512 513 0.905357 AGCTAAGGCACGATCAGGTT 59.095 50.000 0.00 0.00 41.70 3.50
513 514 1.279271 AGCTAAGGCACGATCAGGTTT 59.721 47.619 0.00 0.00 41.70 3.27
514 515 2.500098 AGCTAAGGCACGATCAGGTTTA 59.500 45.455 0.00 0.00 41.70 2.01
515 516 2.608090 GCTAAGGCACGATCAGGTTTAC 59.392 50.000 0.00 0.00 38.54 2.01
516 517 3.679083 GCTAAGGCACGATCAGGTTTACT 60.679 47.826 0.00 0.00 38.54 2.24
517 518 3.418684 AAGGCACGATCAGGTTTACTT 57.581 42.857 0.00 0.00 0.00 2.24
518 519 4.546829 AAGGCACGATCAGGTTTACTTA 57.453 40.909 0.00 0.00 0.00 2.24
519 520 4.546829 AGGCACGATCAGGTTTACTTAA 57.453 40.909 0.00 0.00 0.00 1.85
520 521 4.504858 AGGCACGATCAGGTTTACTTAAG 58.495 43.478 0.00 0.00 0.00 1.85
521 522 4.020485 AGGCACGATCAGGTTTACTTAAGT 60.020 41.667 13.68 13.68 0.00 2.24
522 523 5.186409 AGGCACGATCAGGTTTACTTAAGTA 59.814 40.000 11.38 11.38 0.00 2.24
523 524 5.290400 GGCACGATCAGGTTTACTTAAGTAC 59.710 44.000 14.96 7.37 0.00 2.73
524 525 5.865552 GCACGATCAGGTTTACTTAAGTACA 59.134 40.000 14.96 6.10 0.00 2.90
525 526 6.366877 GCACGATCAGGTTTACTTAAGTACAA 59.633 38.462 14.96 9.78 0.00 2.41
526 527 7.095523 GCACGATCAGGTTTACTTAAGTACAAA 60.096 37.037 14.96 7.11 0.00 2.83
527 528 8.219105 CACGATCAGGTTTACTTAAGTACAAAC 58.781 37.037 19.29 19.29 0.00 2.93
528 529 7.927629 ACGATCAGGTTTACTTAAGTACAAACA 59.072 33.333 24.89 12.52 31.51 2.83
529 530 8.932791 CGATCAGGTTTACTTAAGTACAAACAT 58.067 33.333 24.89 19.40 31.51 2.71
540 541 9.490379 ACTTAAGTACAAACATAGTTCTTGAGG 57.510 33.333 6.26 0.00 35.65 3.86
541 542 9.490379 CTTAAGTACAAACATAGTTCTTGAGGT 57.510 33.333 0.00 0.00 31.19 3.85
542 543 9.841295 TTAAGTACAAACATAGTTCTTGAGGTT 57.159 29.630 0.00 0.00 30.74 3.50
543 544 8.747538 AAGTACAAACATAGTTCTTGAGGTTT 57.252 30.769 0.00 0.00 0.00 3.27
544 545 9.841295 AAGTACAAACATAGTTCTTGAGGTTTA 57.159 29.630 0.00 0.00 0.00 2.01
581 582 7.304497 ACATAAATCATACTCCCTCTGTACC 57.696 40.000 0.00 0.00 0.00 3.34
582 583 6.844388 ACATAAATCATACTCCCTCTGTACCA 59.156 38.462 0.00 0.00 0.00 3.25
583 584 7.347222 ACATAAATCATACTCCCTCTGTACCAA 59.653 37.037 0.00 0.00 0.00 3.67
584 585 6.636454 AAATCATACTCCCTCTGTACCAAA 57.364 37.500 0.00 0.00 0.00 3.28
585 586 6.636454 AATCATACTCCCTCTGTACCAAAA 57.364 37.500 0.00 0.00 0.00 2.44
586 587 6.831664 ATCATACTCCCTCTGTACCAAAAT 57.168 37.500 0.00 0.00 0.00 1.82
587 588 7.931015 ATCATACTCCCTCTGTACCAAAATA 57.069 36.000 0.00 0.00 0.00 1.40
588 589 7.743116 TCATACTCCCTCTGTACCAAAATAA 57.257 36.000 0.00 0.00 0.00 1.40
589 590 8.153221 TCATACTCCCTCTGTACCAAAATAAA 57.847 34.615 0.00 0.00 0.00 1.40
590 591 8.607713 TCATACTCCCTCTGTACCAAAATAAAA 58.392 33.333 0.00 0.00 0.00 1.52
591 592 8.893727 CATACTCCCTCTGTACCAAAATAAAAG 58.106 37.037 0.00 0.00 0.00 2.27
592 593 7.086685 ACTCCCTCTGTACCAAAATAAAAGA 57.913 36.000 0.00 0.00 0.00 2.52
593 594 6.940867 ACTCCCTCTGTACCAAAATAAAAGAC 59.059 38.462 0.00 0.00 0.00 3.01
594 595 6.843752 TCCCTCTGTACCAAAATAAAAGACA 58.156 36.000 0.00 0.00 0.00 3.41
595 596 7.291566 TCCCTCTGTACCAAAATAAAAGACAA 58.708 34.615 0.00 0.00 0.00 3.18
596 597 7.947890 TCCCTCTGTACCAAAATAAAAGACAAT 59.052 33.333 0.00 0.00 0.00 2.71
597 598 8.585018 CCCTCTGTACCAAAATAAAAGACAATT 58.415 33.333 0.00 0.00 0.00 2.32
598 599 9.981114 CCTCTGTACCAAAATAAAAGACAATTT 57.019 29.630 0.00 0.00 0.00 1.82
600 601 9.255304 TCTGTACCAAAATAAAAGACAATTTGC 57.745 29.630 0.00 0.00 31.36 3.68
601 602 8.948631 TGTACCAAAATAAAAGACAATTTGCA 57.051 26.923 0.00 0.00 31.36 4.08
602 603 9.039870 TGTACCAAAATAAAAGACAATTTGCAG 57.960 29.630 0.00 0.00 31.36 4.41
603 604 9.040939 GTACCAAAATAAAAGACAATTTGCAGT 57.959 29.630 0.00 0.00 31.36 4.40
604 605 8.504812 ACCAAAATAAAAGACAATTTGCAGTT 57.495 26.923 0.00 0.00 31.36 3.16
605 606 8.611757 ACCAAAATAAAAGACAATTTGCAGTTC 58.388 29.630 0.00 0.00 31.36 3.01
606 607 8.610896 CCAAAATAAAAGACAATTTGCAGTTCA 58.389 29.630 0.00 0.00 31.36 3.18
607 608 9.985318 CAAAATAAAAGACAATTTGCAGTTCAA 57.015 25.926 0.00 0.00 0.00 2.69
612 613 8.947055 AAAAGACAATTTGCAGTTCAATTAGT 57.053 26.923 0.00 0.00 34.12 2.24
614 615 9.683069 AAAGACAATTTGCAGTTCAATTAGTAG 57.317 29.630 0.00 0.00 34.12 2.57
615 616 8.396272 AGACAATTTGCAGTTCAATTAGTAGT 57.604 30.769 0.00 0.00 34.12 2.73
616 617 9.502091 AGACAATTTGCAGTTCAATTAGTAGTA 57.498 29.630 0.00 0.00 34.12 1.82
680 681 4.471904 TTATAGAGCCAACCAGACACAG 57.528 45.455 0.00 0.00 0.00 3.66
681 682 0.321671 TAGAGCCAACCAGACACAGC 59.678 55.000 0.00 0.00 0.00 4.40
686 687 1.102154 CCAACCAGACACAGCAAACA 58.898 50.000 0.00 0.00 0.00 2.83
709 710 6.713450 ACAGCATGATCAGATTATATTGCACA 59.287 34.615 14.23 0.00 39.69 4.57
780 785 4.286910 CATTACACGTGGAACCAGTTTTG 58.713 43.478 17.16 4.35 0.00 2.44
821 827 4.481368 TTTCCTGGTGTGTATATCGCTT 57.519 40.909 0.00 0.00 0.00 4.68
825 831 6.904463 TCCTGGTGTGTATATCGCTTATTA 57.096 37.500 0.00 0.00 0.00 0.98
826 832 7.476540 TCCTGGTGTGTATATCGCTTATTAT 57.523 36.000 0.00 0.00 0.00 1.28
828 834 8.033038 TCCTGGTGTGTATATCGCTTATTATTC 58.967 37.037 0.00 0.00 0.00 1.75
829 835 7.009265 CCTGGTGTGTATATCGCTTATTATTCG 59.991 40.741 0.00 0.00 0.00 3.34
831 837 7.868922 TGGTGTGTATATCGCTTATTATTCGTT 59.131 33.333 0.00 0.00 0.00 3.85
832 838 8.706035 GGTGTGTATATCGCTTATTATTCGTTT 58.294 33.333 0.00 0.00 0.00 3.60
854 894 2.293122 TGCAGACAGTGTTGCAAATACC 59.707 45.455 22.47 0.00 46.42 2.73
883 927 1.410517 TGTTGCAAAATCAAAGGCCGA 59.589 42.857 0.00 0.00 0.00 5.54
899 943 1.374758 CGACCTGAAGTGGGCAGTC 60.375 63.158 0.00 0.00 33.86 3.51
939 983 1.746991 GCGCCAGGAAGGAAGAAGG 60.747 63.158 0.00 0.00 41.22 3.46
940 984 1.983224 CGCCAGGAAGGAAGAAGGA 59.017 57.895 0.00 0.00 41.22 3.36
941 985 0.391793 CGCCAGGAAGGAAGAAGGAC 60.392 60.000 0.00 0.00 41.22 3.85
942 986 0.693049 GCCAGGAAGGAAGAAGGACA 59.307 55.000 0.00 0.00 41.22 4.02
943 987 1.339535 GCCAGGAAGGAAGAAGGACAG 60.340 57.143 0.00 0.00 41.22 3.51
944 988 1.339535 CCAGGAAGGAAGAAGGACAGC 60.340 57.143 0.00 0.00 41.22 4.40
945 989 1.627834 CAGGAAGGAAGAAGGACAGCT 59.372 52.381 0.00 0.00 0.00 4.24
946 990 2.834549 CAGGAAGGAAGAAGGACAGCTA 59.165 50.000 0.00 0.00 0.00 3.32
947 991 3.261897 CAGGAAGGAAGAAGGACAGCTAA 59.738 47.826 0.00 0.00 0.00 3.09
948 992 3.910627 AGGAAGGAAGAAGGACAGCTAAA 59.089 43.478 0.00 0.00 0.00 1.85
949 993 4.351111 AGGAAGGAAGAAGGACAGCTAAAA 59.649 41.667 0.00 0.00 0.00 1.52
950 994 5.070685 GGAAGGAAGAAGGACAGCTAAAAA 58.929 41.667 0.00 0.00 0.00 1.94
951 995 5.182190 GGAAGGAAGAAGGACAGCTAAAAAG 59.818 44.000 0.00 0.00 0.00 2.27
952 996 5.568620 AGGAAGAAGGACAGCTAAAAAGA 57.431 39.130 0.00 0.00 0.00 2.52
953 997 5.941788 AGGAAGAAGGACAGCTAAAAAGAA 58.058 37.500 0.00 0.00 0.00 2.52
954 998 6.365520 AGGAAGAAGGACAGCTAAAAAGAAA 58.634 36.000 0.00 0.00 0.00 2.52
955 999 6.833933 AGGAAGAAGGACAGCTAAAAAGAAAA 59.166 34.615 0.00 0.00 0.00 2.29
956 1000 7.013750 AGGAAGAAGGACAGCTAAAAAGAAAAG 59.986 37.037 0.00 0.00 0.00 2.27
957 1001 6.641169 AGAAGGACAGCTAAAAAGAAAAGG 57.359 37.500 0.00 0.00 0.00 3.11
958 1002 6.365520 AGAAGGACAGCTAAAAAGAAAAGGA 58.634 36.000 0.00 0.00 0.00 3.36
959 1003 6.833933 AGAAGGACAGCTAAAAAGAAAAGGAA 59.166 34.615 0.00 0.00 0.00 3.36
960 1004 6.641169 AGGACAGCTAAAAAGAAAAGGAAG 57.359 37.500 0.00 0.00 0.00 3.46
961 1005 6.365520 AGGACAGCTAAAAAGAAAAGGAAGA 58.634 36.000 0.00 0.00 0.00 2.87
962 1006 6.833933 AGGACAGCTAAAAAGAAAAGGAAGAA 59.166 34.615 0.00 0.00 0.00 2.52
963 1007 7.013750 AGGACAGCTAAAAAGAAAAGGAAGAAG 59.986 37.037 0.00 0.00 0.00 2.85
964 1008 7.043961 ACAGCTAAAAAGAAAAGGAAGAAGG 57.956 36.000 0.00 0.00 0.00 3.46
965 1009 6.833933 ACAGCTAAAAAGAAAAGGAAGAAGGA 59.166 34.615 0.00 0.00 0.00 3.36
966 1010 7.142021 CAGCTAAAAAGAAAAGGAAGAAGGAC 58.858 38.462 0.00 0.00 0.00 3.85
967 1011 6.265649 AGCTAAAAAGAAAAGGAAGAAGGACC 59.734 38.462 0.00 0.00 0.00 4.46
1083 1134 1.320344 CCACCATGAAGCAGCTGCAT 61.320 55.000 38.24 29.24 45.16 3.96
1097 1148 3.415087 GCATGCCCACCTCCTCCT 61.415 66.667 6.36 0.00 0.00 3.69
1106 1157 2.122729 CCTCCTCCTCCACCACCA 59.877 66.667 0.00 0.00 0.00 4.17
1936 2092 4.090761 TGAATGTGATCTTATCTGGCCC 57.909 45.455 0.00 0.00 0.00 5.80
1960 2116 4.641989 GCCTGATCATTTGTCTATGGTGTT 59.358 41.667 0.00 0.00 0.00 3.32
1980 2148 1.029681 TATGATGACGCAGGTACGCT 58.970 50.000 0.00 0.00 36.19 5.07
2094 2270 2.908940 GCCTGTGCTGCAGTTGGT 60.909 61.111 16.64 0.00 43.55 3.67
2122 2298 1.002544 AGCTAGGCACTGAACTTGACC 59.997 52.381 0.00 0.00 41.52 4.02
2202 2379 6.043411 GGATATGTACTCAAAGTGTGGAGAC 58.957 44.000 0.00 0.00 35.17 3.36
2229 2406 5.865085 ACTAGAGCCATACAAGTGTTTGAA 58.135 37.500 0.00 0.00 37.73 2.69
2243 2420 4.035441 AGTGTTTGAAAAATTGCCATGCAC 59.965 37.500 0.00 0.00 38.71 4.57
2323 2507 4.009675 TGAAGCTATTCGGCAGTTTGAAT 58.990 39.130 0.00 0.00 38.34 2.57
2335 2519 4.171754 GCAGTTTGAATTGATGAGGAAGC 58.828 43.478 0.00 0.00 0.00 3.86
2385 4767 5.582665 CACTTTCATAGGAGTACTTTCTGCC 59.417 44.000 0.00 0.00 0.00 4.85
2703 5106 5.173664 TCATCCAAGATATATGCAAGCTCG 58.826 41.667 0.00 0.00 0.00 5.03
2945 5360 2.948979 ACAAAACCAGACGCAGATCAAA 59.051 40.909 0.00 0.00 0.00 2.69
3041 5461 3.226884 GGAGGCGACTGCTGTTTTA 57.773 52.632 0.80 0.00 46.74 1.52
3059 5480 3.914426 TTATCTCAGGGAGCAGAAACC 57.086 47.619 0.00 0.00 0.00 3.27
3068 5489 1.437625 GAGCAGAAACCTCAGCTGAC 58.562 55.000 13.74 2.27 43.85 3.51
3086 5507 7.199541 AGCTGACATGCTGAATATAAATGTC 57.800 36.000 7.06 7.06 44.70 3.06
3115 5538 6.632556 TCCAAGATGGAACATTGCTTTGCG 62.633 45.833 0.00 0.00 45.00 4.85
3157 5580 1.683917 CCAGGATCGAACCAGGTCTAG 59.316 57.143 14.80 0.00 32.87 2.43
3164 5587 4.675976 TCGAACCAGGTCTAGTTTGAAA 57.324 40.909 0.00 0.00 34.24 2.69
3166 5589 6.349243 TCGAACCAGGTCTAGTTTGAAATA 57.651 37.500 0.00 0.00 34.24 1.40
3261 5689 7.517417 GCTGTGTCTATGAAAATACCTGATTCG 60.517 40.741 0.00 0.00 0.00 3.34
3262 5690 7.552459 TGTGTCTATGAAAATACCTGATTCGA 58.448 34.615 0.00 0.00 0.00 3.71
3290 5719 5.193679 AGCTACCTTGAAACTTTCAACAGT 58.806 37.500 12.12 13.80 44.21 3.55
3291 5720 5.652452 AGCTACCTTGAAACTTTCAACAGTT 59.348 36.000 12.12 6.21 44.21 3.16
3304 5733 7.257722 ACTTTCAACAGTTGATTTCAATTCGT 58.742 30.769 16.89 0.85 39.84 3.85
3310 5739 6.738114 ACAGTTGATTTCAATTCGTCAATGT 58.262 32.000 0.00 0.00 38.24 2.71
3323 5752 5.856126 TCGTCAATGTACTCAATTGGTTC 57.144 39.130 5.42 1.64 0.00 3.62
3352 5781 6.701340 AGTTGTCAGAACATGCTAGATAACA 58.299 36.000 14.97 1.88 34.20 2.41
3475 5967 3.586618 GAGATGGGATCCAAAGGAGCTAT 59.413 47.826 15.23 0.00 38.31 2.97
3496 5988 2.034939 TGTTTGCTCCAAGTCAGCATTG 59.965 45.455 0.00 0.00 46.24 2.82
3501 5993 2.490903 GCTCCAAGTCAGCATTGATGTT 59.509 45.455 1.30 0.00 36.82 2.71
3869 6361 7.148423 CGGTGACTATGAACAATCAATTCTTCA 60.148 37.037 0.00 0.00 39.49 3.02
3884 6376 5.886960 ATTCTTCAAAGAACGGATCAAGG 57.113 39.130 7.32 0.00 46.80 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.798889 GCAAGGTGAAGCCAGTTTAAACC 60.799 47.826 14.72 0.00 40.61 3.27
1 2 3.381045 GCAAGGTGAAGCCAGTTTAAAC 58.619 45.455 10.47 10.47 40.61 2.01
2 3 2.034053 CGCAAGGTGAAGCCAGTTTAAA 59.966 45.455 0.00 0.00 40.61 1.52
3 4 1.606668 CGCAAGGTGAAGCCAGTTTAA 59.393 47.619 0.00 0.00 40.61 1.52
4 5 1.234821 CGCAAGGTGAAGCCAGTTTA 58.765 50.000 0.00 0.00 40.61 2.01
5 6 2.032981 CGCAAGGTGAAGCCAGTTT 58.967 52.632 0.00 0.00 40.61 2.66
6 7 3.749981 CGCAAGGTGAAGCCAGTT 58.250 55.556 0.00 0.00 40.61 3.16
29 30 6.436532 TCCAAGGTTGTTTACTACCACAAAAA 59.563 34.615 14.36 0.00 42.87 1.94
30 31 5.950549 TCCAAGGTTGTTTACTACCACAAAA 59.049 36.000 14.36 0.00 42.87 2.44
31 32 5.507637 TCCAAGGTTGTTTACTACCACAAA 58.492 37.500 14.36 0.00 42.87 2.83
32 33 5.113446 TCCAAGGTTGTTTACTACCACAA 57.887 39.130 14.36 0.00 42.87 3.33
33 34 4.774660 TCCAAGGTTGTTTACTACCACA 57.225 40.909 14.36 0.00 42.87 4.17
34 35 4.457949 CCATCCAAGGTTGTTTACTACCAC 59.542 45.833 14.36 0.00 42.87 4.16
35 36 4.351407 TCCATCCAAGGTTGTTTACTACCA 59.649 41.667 14.36 0.00 42.87 3.25
36 37 4.913784 TCCATCCAAGGTTGTTTACTACC 58.086 43.478 5.51 5.51 41.16 3.18
37 38 6.887626 TTTCCATCCAAGGTTGTTTACTAC 57.112 37.500 0.00 0.00 0.00 2.73
38 39 7.235079 TCATTTCCATCCAAGGTTGTTTACTA 58.765 34.615 0.00 0.00 0.00 1.82
39 40 6.074648 TCATTTCCATCCAAGGTTGTTTACT 58.925 36.000 0.00 0.00 0.00 2.24
40 41 6.015434 ACTCATTTCCATCCAAGGTTGTTTAC 60.015 38.462 0.00 0.00 0.00 2.01
41 42 6.074648 ACTCATTTCCATCCAAGGTTGTTTA 58.925 36.000 0.00 0.00 0.00 2.01
42 43 4.901250 ACTCATTTCCATCCAAGGTTGTTT 59.099 37.500 0.00 0.00 0.00 2.83
43 44 4.482990 ACTCATTTCCATCCAAGGTTGTT 58.517 39.130 0.00 0.00 0.00 2.83
44 45 4.082125 GACTCATTTCCATCCAAGGTTGT 58.918 43.478 0.00 0.00 0.00 3.32
45 46 3.445096 GGACTCATTTCCATCCAAGGTTG 59.555 47.826 0.00 0.00 35.49 3.77
46 47 3.075882 TGGACTCATTTCCATCCAAGGTT 59.924 43.478 0.00 0.00 41.00 3.50
47 48 2.649312 TGGACTCATTTCCATCCAAGGT 59.351 45.455 0.00 0.00 41.00 3.50
48 49 3.370840 TGGACTCATTTCCATCCAAGG 57.629 47.619 0.00 0.00 41.00 3.61
50 51 4.021192 GCTTTTGGACTCATTTCCATCCAA 60.021 41.667 0.42 0.42 45.42 3.53
51 52 3.511146 GCTTTTGGACTCATTTCCATCCA 59.489 43.478 0.00 0.00 45.42 3.41
52 53 3.511146 TGCTTTTGGACTCATTTCCATCC 59.489 43.478 0.00 0.00 45.42 3.51
53 54 4.789012 TGCTTTTGGACTCATTTCCATC 57.211 40.909 0.00 0.00 45.42 3.51
54 55 5.482878 AGATTGCTTTTGGACTCATTTCCAT 59.517 36.000 0.00 0.00 45.42 3.41
55 56 4.834496 AGATTGCTTTTGGACTCATTTCCA 59.166 37.500 0.00 0.00 44.39 3.53
56 57 5.397142 AGATTGCTTTTGGACTCATTTCC 57.603 39.130 0.00 0.00 36.03 3.13
57 58 5.636543 CCAAGATTGCTTTTGGACTCATTTC 59.363 40.000 0.00 0.00 45.32 2.17
58 59 5.544650 CCAAGATTGCTTTTGGACTCATTT 58.455 37.500 0.00 0.00 45.32 2.32
59 60 4.562143 GCCAAGATTGCTTTTGGACTCATT 60.562 41.667 7.40 0.00 45.32 2.57
60 61 3.056322 GCCAAGATTGCTTTTGGACTCAT 60.056 43.478 7.40 0.00 45.32 2.90
61 62 2.297033 GCCAAGATTGCTTTTGGACTCA 59.703 45.455 7.40 0.00 45.32 3.41
62 63 2.353109 GGCCAAGATTGCTTTTGGACTC 60.353 50.000 0.00 0.00 46.82 3.36
63 64 1.620323 GGCCAAGATTGCTTTTGGACT 59.380 47.619 0.00 0.00 46.82 3.85
64 65 2.084610 GGCCAAGATTGCTTTTGGAC 57.915 50.000 0.00 0.17 45.32 4.02
65 66 2.014010 AGGCCAAGATTGCTTTTGGA 57.986 45.000 5.01 0.00 45.32 3.53
66 67 2.845363 AAGGCCAAGATTGCTTTTGG 57.155 45.000 5.01 0.00 45.28 3.28
67 68 3.184986 CGAAAAGGCCAAGATTGCTTTTG 59.815 43.478 5.01 5.37 37.95 2.44
68 69 3.069443 TCGAAAAGGCCAAGATTGCTTTT 59.931 39.130 5.01 0.00 39.36 2.27
69 70 2.627699 TCGAAAAGGCCAAGATTGCTTT 59.372 40.909 5.01 0.00 30.14 3.51
70 71 2.238521 TCGAAAAGGCCAAGATTGCTT 58.761 42.857 5.01 0.00 33.74 3.91
71 72 1.909700 TCGAAAAGGCCAAGATTGCT 58.090 45.000 5.01 0.00 0.00 3.91
72 73 2.164219 TCATCGAAAAGGCCAAGATTGC 59.836 45.455 5.01 0.00 0.00 3.56
73 74 3.691118 TCTCATCGAAAAGGCCAAGATTG 59.309 43.478 5.01 0.00 0.00 2.67
74 75 3.691609 GTCTCATCGAAAAGGCCAAGATT 59.308 43.478 5.01 0.00 0.00 2.40
75 76 3.274288 GTCTCATCGAAAAGGCCAAGAT 58.726 45.455 5.01 0.00 0.00 2.40
76 77 2.699954 GTCTCATCGAAAAGGCCAAGA 58.300 47.619 5.01 0.00 0.00 3.02
77 78 1.394917 CGTCTCATCGAAAAGGCCAAG 59.605 52.381 5.01 0.00 0.00 3.61
78 79 1.001520 TCGTCTCATCGAAAAGGCCAA 59.998 47.619 5.01 0.00 36.89 4.52
79 80 0.606096 TCGTCTCATCGAAAAGGCCA 59.394 50.000 5.01 0.00 36.89 5.36
80 81 1.722011 TTCGTCTCATCGAAAAGGCC 58.278 50.000 0.00 0.00 44.85 5.19
86 87 4.364860 TGAAAGTTGTTCGTCTCATCGAA 58.635 39.130 0.00 0.00 45.46 3.71
87 88 3.972403 TGAAAGTTGTTCGTCTCATCGA 58.028 40.909 0.00 0.00 38.08 3.59
88 89 4.150627 ACATGAAAGTTGTTCGTCTCATCG 59.849 41.667 0.00 0.00 0.00 3.84
89 90 5.597813 ACATGAAAGTTGTTCGTCTCATC 57.402 39.130 0.00 0.00 0.00 2.92
90 91 5.527214 TCAACATGAAAGTTGTTCGTCTCAT 59.473 36.000 0.00 0.00 46.78 2.90
91 92 4.873259 TCAACATGAAAGTTGTTCGTCTCA 59.127 37.500 0.00 0.00 46.78 3.27
92 93 5.403897 TCAACATGAAAGTTGTTCGTCTC 57.596 39.130 0.00 0.00 46.78 3.36
93 94 5.569413 GTTCAACATGAAAGTTGTTCGTCT 58.431 37.500 0.00 0.00 46.78 4.18
94 95 4.433304 CGTTCAACATGAAAGTTGTTCGTC 59.567 41.667 0.00 0.00 46.78 4.20
95 96 4.142773 ACGTTCAACATGAAAGTTGTTCGT 60.143 37.500 17.72 17.72 44.43 3.85
96 97 4.339429 ACGTTCAACATGAAAGTTGTTCG 58.661 39.130 0.00 16.90 44.43 3.95
119 120 7.890127 ACCATCAAGATGACCTCTGATTAAAAA 59.110 33.333 11.48 0.00 41.20 1.94
120 121 7.405292 ACCATCAAGATGACCTCTGATTAAAA 58.595 34.615 11.48 0.00 41.20 1.52
121 122 6.962182 ACCATCAAGATGACCTCTGATTAAA 58.038 36.000 11.48 0.00 41.20 1.52
122 123 6.156775 TGACCATCAAGATGACCTCTGATTAA 59.843 38.462 11.48 0.00 41.20 1.40
123 124 5.662657 TGACCATCAAGATGACCTCTGATTA 59.337 40.000 11.48 0.00 41.20 1.75
124 125 4.472470 TGACCATCAAGATGACCTCTGATT 59.528 41.667 11.48 0.00 41.20 2.57
125 126 4.035814 TGACCATCAAGATGACCTCTGAT 58.964 43.478 11.48 0.00 41.20 2.90
126 127 3.444029 TGACCATCAAGATGACCTCTGA 58.556 45.455 11.48 0.00 41.20 3.27
127 128 3.900966 TGACCATCAAGATGACCTCTG 57.099 47.619 11.48 0.00 41.20 3.35
128 129 4.916041 TTTGACCATCAAGATGACCTCT 57.084 40.909 11.48 0.00 41.20 3.69
129 130 5.238214 GCTATTTGACCATCAAGATGACCTC 59.762 44.000 11.48 4.11 41.20 3.85
130 131 5.104193 AGCTATTTGACCATCAAGATGACCT 60.104 40.000 11.48 0.00 41.20 3.85
131 132 5.128919 AGCTATTTGACCATCAAGATGACC 58.871 41.667 11.48 3.71 41.20 4.02
132 133 5.050499 CGAGCTATTTGACCATCAAGATGAC 60.050 44.000 11.48 6.07 41.20 3.06
133 134 5.052481 CGAGCTATTTGACCATCAAGATGA 58.948 41.667 11.48 0.00 41.20 2.92
134 135 4.319333 GCGAGCTATTTGACCATCAAGATG 60.319 45.833 3.07 3.07 37.70 2.90
135 136 3.812053 GCGAGCTATTTGACCATCAAGAT 59.188 43.478 0.00 0.00 37.70 2.40
136 137 3.198068 GCGAGCTATTTGACCATCAAGA 58.802 45.455 0.00 0.00 37.70 3.02
137 138 2.033407 CGCGAGCTATTTGACCATCAAG 60.033 50.000 0.00 0.00 37.70 3.02
138 139 1.933181 CGCGAGCTATTTGACCATCAA 59.067 47.619 0.00 0.00 34.03 2.57
139 140 1.570813 CGCGAGCTATTTGACCATCA 58.429 50.000 0.00 0.00 0.00 3.07
153 154 2.527487 GCAAACAGATATTTTGCGCGAG 59.473 45.455 12.10 0.00 46.77 5.03
154 155 2.514902 GCAAACAGATATTTTGCGCGA 58.485 42.857 12.10 0.00 46.77 5.87
155 156 2.957657 GCAAACAGATATTTTGCGCG 57.042 45.000 0.00 0.00 46.77 6.86
174 175 1.299468 GTCTGATGGGTAGCGCGAG 60.299 63.158 12.10 0.00 0.00 5.03
175 176 1.391933 ATGTCTGATGGGTAGCGCGA 61.392 55.000 12.10 0.00 0.00 5.87
176 177 1.068083 ATGTCTGATGGGTAGCGCG 59.932 57.895 0.00 0.00 0.00 6.86
177 178 0.104855 TCATGTCTGATGGGTAGCGC 59.895 55.000 0.00 0.00 0.00 5.92
178 179 1.858091 GTCATGTCTGATGGGTAGCG 58.142 55.000 0.00 0.00 32.98 4.26
179 180 1.137086 ACGTCATGTCTGATGGGTAGC 59.863 52.381 0.00 0.00 41.84 3.58
180 181 3.085443 GACGTCATGTCTGATGGGTAG 57.915 52.381 11.55 0.00 44.58 3.18
191 192 3.068881 CCCCACCAGACGTCATGT 58.931 61.111 19.50 11.26 0.00 3.21
192 193 2.436646 GCCCCACCAGACGTCATG 60.437 66.667 19.50 12.50 0.00 3.07
193 194 4.082523 CGCCCCACCAGACGTCAT 62.083 66.667 19.50 0.00 0.00 3.06
203 204 3.194272 GAAATATGGCGCGCCCCAC 62.194 63.158 44.42 25.47 37.79 4.61
204 205 2.904866 GAAATATGGCGCGCCCCA 60.905 61.111 44.42 32.59 39.65 4.96
205 206 4.025401 CGAAATATGGCGCGCCCC 62.025 66.667 44.42 23.87 34.56 5.80
206 207 4.683334 GCGAAATATGGCGCGCCC 62.683 66.667 44.42 27.66 43.96 6.13
211 212 0.249868 TCAGGAGGCGAAATATGGCG 60.250 55.000 0.00 0.00 36.92 5.69
212 213 1.230324 GTCAGGAGGCGAAATATGGC 58.770 55.000 0.00 0.00 0.00 4.40
213 214 2.103094 TCTGTCAGGAGGCGAAATATGG 59.897 50.000 0.00 0.00 0.00 2.74
214 215 3.388308 CTCTGTCAGGAGGCGAAATATG 58.612 50.000 0.00 0.00 0.00 1.78
215 216 2.224161 GCTCTGTCAGGAGGCGAAATAT 60.224 50.000 0.00 0.00 34.21 1.28
216 217 1.137086 GCTCTGTCAGGAGGCGAAATA 59.863 52.381 0.00 0.00 34.21 1.40
217 218 0.107945 GCTCTGTCAGGAGGCGAAAT 60.108 55.000 0.00 0.00 34.21 2.17
218 219 1.188219 AGCTCTGTCAGGAGGCGAAA 61.188 55.000 0.00 0.00 34.21 3.46
219 220 1.607756 AGCTCTGTCAGGAGGCGAA 60.608 57.895 0.00 0.00 34.21 4.70
220 221 2.036414 AGCTCTGTCAGGAGGCGA 59.964 61.111 0.00 0.00 34.21 5.54
221 222 2.183811 CAGCTCTGTCAGGAGGCG 59.816 66.667 0.00 0.00 34.21 5.52
222 223 2.125188 GCAGCTCTGTCAGGAGGC 60.125 66.667 0.00 2.93 34.21 4.70
223 224 0.252479 AATGCAGCTCTGTCAGGAGG 59.748 55.000 0.00 0.00 34.21 4.30
224 225 1.654317 GAATGCAGCTCTGTCAGGAG 58.346 55.000 0.00 0.00 36.50 3.69
225 226 0.251354 GGAATGCAGCTCTGTCAGGA 59.749 55.000 0.00 0.00 0.00 3.86
226 227 1.088340 CGGAATGCAGCTCTGTCAGG 61.088 60.000 0.00 0.00 0.00 3.86
227 228 0.108472 TCGGAATGCAGCTCTGTCAG 60.108 55.000 7.17 0.00 0.00 3.51
228 229 0.538584 ATCGGAATGCAGCTCTGTCA 59.461 50.000 7.17 0.00 0.00 3.58
229 230 2.402305 CTATCGGAATGCAGCTCTGTC 58.598 52.381 7.17 0.00 0.00 3.51
230 231 1.539929 GCTATCGGAATGCAGCTCTGT 60.540 52.381 7.17 0.00 0.00 3.41
231 232 1.146637 GCTATCGGAATGCAGCTCTG 58.853 55.000 0.00 0.00 0.00 3.35
232 233 1.047002 AGCTATCGGAATGCAGCTCT 58.953 50.000 0.00 0.00 40.25 4.09
233 234 3.603144 AGCTATCGGAATGCAGCTC 57.397 52.632 0.00 0.00 40.25 4.09
234 235 1.047002 AGAGCTATCGGAATGCAGCT 58.953 50.000 0.00 6.51 46.71 4.24
235 236 2.732412 TAGAGCTATCGGAATGCAGC 57.268 50.000 0.00 0.00 0.00 5.25
236 237 4.250116 AGTTAGAGCTATCGGAATGCAG 57.750 45.455 0.00 0.00 0.00 4.41
237 238 4.672587 AAGTTAGAGCTATCGGAATGCA 57.327 40.909 0.00 0.00 0.00 3.96
238 239 5.742446 CAAAAGTTAGAGCTATCGGAATGC 58.258 41.667 0.00 0.00 0.00 3.56
239 240 5.294306 TGCAAAAGTTAGAGCTATCGGAATG 59.706 40.000 0.00 0.00 0.00 2.67
240 241 5.428253 TGCAAAAGTTAGAGCTATCGGAAT 58.572 37.500 0.00 0.00 0.00 3.01
241 242 4.827692 TGCAAAAGTTAGAGCTATCGGAA 58.172 39.130 0.00 0.00 0.00 4.30
242 243 4.465632 TGCAAAAGTTAGAGCTATCGGA 57.534 40.909 0.00 0.00 0.00 4.55
243 244 5.107837 CGTATGCAAAAGTTAGAGCTATCGG 60.108 44.000 0.00 0.00 0.00 4.18
244 245 5.685954 TCGTATGCAAAAGTTAGAGCTATCG 59.314 40.000 0.00 0.00 0.00 2.92
245 246 7.464830 TTCGTATGCAAAAGTTAGAGCTATC 57.535 36.000 0.00 0.00 0.00 2.08
246 247 8.438676 AATTCGTATGCAAAAGTTAGAGCTAT 57.561 30.769 0.00 0.00 0.00 2.97
247 248 7.843490 AATTCGTATGCAAAAGTTAGAGCTA 57.157 32.000 0.00 0.00 0.00 3.32
248 249 6.743575 AATTCGTATGCAAAAGTTAGAGCT 57.256 33.333 0.00 0.00 0.00 4.09
249 250 6.251376 CCAAATTCGTATGCAAAAGTTAGAGC 59.749 38.462 0.00 0.00 0.00 4.09
250 251 7.526608 TCCAAATTCGTATGCAAAAGTTAGAG 58.473 34.615 0.00 0.00 0.00 2.43
251 252 7.441890 TCCAAATTCGTATGCAAAAGTTAGA 57.558 32.000 0.00 0.00 0.00 2.10
252 253 8.586273 CAATCCAAATTCGTATGCAAAAGTTAG 58.414 33.333 0.00 0.00 0.00 2.34
253 254 8.300286 TCAATCCAAATTCGTATGCAAAAGTTA 58.700 29.630 0.00 0.00 0.00 2.24
254 255 7.151308 TCAATCCAAATTCGTATGCAAAAGTT 58.849 30.769 0.00 0.00 0.00 2.66
255 256 6.686630 TCAATCCAAATTCGTATGCAAAAGT 58.313 32.000 0.00 0.00 0.00 2.66
256 257 7.028962 TCTCAATCCAAATTCGTATGCAAAAG 58.971 34.615 0.00 0.00 0.00 2.27
257 258 6.918626 TCTCAATCCAAATTCGTATGCAAAA 58.081 32.000 0.00 0.00 0.00 2.44
258 259 6.507958 TCTCAATCCAAATTCGTATGCAAA 57.492 33.333 0.00 0.00 0.00 3.68
259 260 6.698008 ATCTCAATCCAAATTCGTATGCAA 57.302 33.333 0.00 0.00 0.00 4.08
260 261 7.800155 TTATCTCAATCCAAATTCGTATGCA 57.200 32.000 0.00 0.00 0.00 3.96
261 262 9.683069 AAATTATCTCAATCCAAATTCGTATGC 57.317 29.630 0.00 0.00 0.00 3.14
318 319 9.923143 TGAAGTCTTTATTTAAGAGATCGTTGA 57.077 29.630 0.00 0.00 43.39 3.18
369 370 9.799106 CCAAGTTCCATCCTAATATATTCAAGT 57.201 33.333 0.00 0.00 0.00 3.16
370 371 9.799106 ACCAAGTTCCATCCTAATATATTCAAG 57.201 33.333 0.00 0.00 0.00 3.02
373 374 9.384764 GCTACCAAGTTCCATCCTAATATATTC 57.615 37.037 0.00 0.00 0.00 1.75
374 375 8.890472 TGCTACCAAGTTCCATCCTAATATATT 58.110 33.333 2.97 2.97 0.00 1.28
375 376 8.449423 TGCTACCAAGTTCCATCCTAATATAT 57.551 34.615 0.00 0.00 0.00 0.86
376 377 7.865530 TGCTACCAAGTTCCATCCTAATATA 57.134 36.000 0.00 0.00 0.00 0.86
377 378 6.763715 TGCTACCAAGTTCCATCCTAATAT 57.236 37.500 0.00 0.00 0.00 1.28
378 379 6.328934 TGATGCTACCAAGTTCCATCCTAATA 59.671 38.462 0.00 0.00 33.21 0.98
379 380 5.132648 TGATGCTACCAAGTTCCATCCTAAT 59.867 40.000 0.00 0.00 33.21 1.73
380 381 4.473196 TGATGCTACCAAGTTCCATCCTAA 59.527 41.667 0.00 0.00 33.21 2.69
381 382 4.037222 TGATGCTACCAAGTTCCATCCTA 58.963 43.478 0.00 0.00 33.21 2.94
382 383 2.846206 TGATGCTACCAAGTTCCATCCT 59.154 45.455 0.00 0.00 33.21 3.24
383 384 3.281727 TGATGCTACCAAGTTCCATCC 57.718 47.619 0.00 0.00 33.21 3.51
384 385 4.999950 CCTATGATGCTACCAAGTTCCATC 59.000 45.833 0.00 0.00 34.41 3.51
385 386 4.660303 TCCTATGATGCTACCAAGTTCCAT 59.340 41.667 0.00 0.00 0.00 3.41
386 387 4.037222 TCCTATGATGCTACCAAGTTCCA 58.963 43.478 0.00 0.00 0.00 3.53
387 388 4.689612 TCCTATGATGCTACCAAGTTCC 57.310 45.455 0.00 0.00 0.00 3.62
388 389 7.233389 TCTATCCTATGATGCTACCAAGTTC 57.767 40.000 0.00 0.00 32.18 3.01
389 390 7.618019 TTCTATCCTATGATGCTACCAAGTT 57.382 36.000 0.00 0.00 32.18 2.66
390 391 7.618019 TTTCTATCCTATGATGCTACCAAGT 57.382 36.000 0.00 0.00 32.18 3.16
391 392 6.593382 GCTTTCTATCCTATGATGCTACCAAG 59.407 42.308 0.00 0.00 32.18 3.61
392 393 6.270927 AGCTTTCTATCCTATGATGCTACCAA 59.729 38.462 0.00 0.00 32.18 3.67
393 394 5.782331 AGCTTTCTATCCTATGATGCTACCA 59.218 40.000 0.00 0.00 32.18 3.25
394 395 6.293004 AGCTTTCTATCCTATGATGCTACC 57.707 41.667 0.00 0.00 32.18 3.18
395 396 8.527810 AGTAAGCTTTCTATCCTATGATGCTAC 58.472 37.037 3.20 0.00 32.18 3.58
396 397 8.657387 AGTAAGCTTTCTATCCTATGATGCTA 57.343 34.615 3.20 0.00 32.18 3.49
397 398 7.552050 AGTAAGCTTTCTATCCTATGATGCT 57.448 36.000 3.20 0.00 32.18 3.79
398 399 9.311916 CATAGTAAGCTTTCTATCCTATGATGC 57.688 37.037 19.42 0.00 32.18 3.91
399 400 9.311916 GCATAGTAAGCTTTCTATCCTATGATG 57.688 37.037 19.42 11.57 32.18 3.07
400 401 9.265862 AGCATAGTAAGCTTTCTATCCTATGAT 57.734 33.333 19.42 13.50 39.87 2.45
401 402 8.526978 CAGCATAGTAAGCTTTCTATCCTATGA 58.473 37.037 19.42 0.00 41.14 2.15
402 403 7.277539 GCAGCATAGTAAGCTTTCTATCCTATG 59.722 40.741 19.42 16.64 41.14 2.23
403 404 7.180051 AGCAGCATAGTAAGCTTTCTATCCTAT 59.820 37.037 19.42 8.31 41.14 2.57
404 405 6.495181 AGCAGCATAGTAAGCTTTCTATCCTA 59.505 38.462 19.42 5.66 41.14 2.94
405 406 5.306678 AGCAGCATAGTAAGCTTTCTATCCT 59.693 40.000 19.42 14.78 41.14 3.24
406 407 5.546526 AGCAGCATAGTAAGCTTTCTATCC 58.453 41.667 19.42 12.93 41.14 2.59
407 408 7.375053 AGTAGCAGCATAGTAAGCTTTCTATC 58.625 38.462 19.42 14.73 41.14 2.08
408 409 7.296628 AGTAGCAGCATAGTAAGCTTTCTAT 57.703 36.000 17.23 17.23 41.14 1.98
409 410 6.716934 AGTAGCAGCATAGTAAGCTTTCTA 57.283 37.500 14.30 14.30 41.14 2.10
410 411 5.606348 AGTAGCAGCATAGTAAGCTTTCT 57.394 39.130 3.20 7.70 41.14 2.52
411 412 7.772332 TTAAGTAGCAGCATAGTAAGCTTTC 57.228 36.000 3.20 0.00 41.14 2.62
412 413 8.616076 CAATTAAGTAGCAGCATAGTAAGCTTT 58.384 33.333 3.20 0.00 41.14 3.51
413 414 7.227512 CCAATTAAGTAGCAGCATAGTAAGCTT 59.772 37.037 3.48 3.48 41.14 3.74
414 415 6.708054 CCAATTAAGTAGCAGCATAGTAAGCT 59.292 38.462 0.00 0.00 44.62 3.74
415 416 6.483640 ACCAATTAAGTAGCAGCATAGTAAGC 59.516 38.462 0.00 0.00 0.00 3.09
416 417 7.171678 GGACCAATTAAGTAGCAGCATAGTAAG 59.828 40.741 0.00 0.00 0.00 2.34
417 418 6.990349 GGACCAATTAAGTAGCAGCATAGTAA 59.010 38.462 0.00 0.00 0.00 2.24
418 419 6.099125 TGGACCAATTAAGTAGCAGCATAGTA 59.901 38.462 0.00 0.00 0.00 1.82
419 420 5.104527 TGGACCAATTAAGTAGCAGCATAGT 60.105 40.000 0.00 0.00 0.00 2.12
420 421 5.368145 TGGACCAATTAAGTAGCAGCATAG 58.632 41.667 0.00 0.00 0.00 2.23
421 422 5.366482 TGGACCAATTAAGTAGCAGCATA 57.634 39.130 0.00 0.00 0.00 3.14
422 423 4.235079 TGGACCAATTAAGTAGCAGCAT 57.765 40.909 0.00 0.00 0.00 3.79
423 424 3.712016 TGGACCAATTAAGTAGCAGCA 57.288 42.857 0.00 0.00 0.00 4.41
424 425 5.582689 AATTGGACCAATTAAGTAGCAGC 57.417 39.130 27.53 0.00 41.50 5.25
425 426 7.396540 AGAAATTGGACCAATTAAGTAGCAG 57.603 36.000 28.57 0.00 42.32 4.24
431 432 9.683069 GCACATATAGAAATTGGACCAATTAAG 57.317 33.333 28.57 14.46 42.32 1.85
432 433 9.420118 AGCACATATAGAAATTGGACCAATTAA 57.580 29.630 28.57 18.65 42.32 1.40
433 434 8.995027 AGCACATATAGAAATTGGACCAATTA 57.005 30.769 28.57 16.29 42.32 1.40
434 435 7.255242 CGAGCACATATAGAAATTGGACCAATT 60.255 37.037 24.12 24.12 44.62 2.32
435 436 6.205464 CGAGCACATATAGAAATTGGACCAAT 59.795 38.462 14.28 14.28 35.39 3.16
436 437 5.527214 CGAGCACATATAGAAATTGGACCAA 59.473 40.000 9.92 9.92 0.00 3.67
437 438 5.056480 CGAGCACATATAGAAATTGGACCA 58.944 41.667 0.00 0.00 0.00 4.02
438 439 4.083802 GCGAGCACATATAGAAATTGGACC 60.084 45.833 0.00 0.00 0.00 4.46
439 440 4.511454 TGCGAGCACATATAGAAATTGGAC 59.489 41.667 0.00 0.00 0.00 4.02
440 441 4.511454 GTGCGAGCACATATAGAAATTGGA 59.489 41.667 21.73 0.00 45.53 3.53
441 442 4.776743 GTGCGAGCACATATAGAAATTGG 58.223 43.478 21.73 0.00 45.53 3.16
454 455 3.430931 TGTTTAAGTTTTGTGCGAGCAC 58.569 40.909 20.14 20.14 46.33 4.40
455 456 3.766676 TGTTTAAGTTTTGTGCGAGCA 57.233 38.095 0.00 0.00 0.00 4.26
456 457 3.242016 GGTTGTTTAAGTTTTGTGCGAGC 59.758 43.478 0.00 0.00 0.00 5.03
457 458 4.416620 TGGTTGTTTAAGTTTTGTGCGAG 58.583 39.130 0.00 0.00 0.00 5.03
458 459 4.436242 TGGTTGTTTAAGTTTTGTGCGA 57.564 36.364 0.00 0.00 0.00 5.10
459 460 5.744345 TGTATGGTTGTTTAAGTTTTGTGCG 59.256 36.000 0.00 0.00 0.00 5.34
460 461 6.291374 CGTGTATGGTTGTTTAAGTTTTGTGC 60.291 38.462 0.00 0.00 0.00 4.57
461 462 6.748198 ACGTGTATGGTTGTTTAAGTTTTGTG 59.252 34.615 0.00 0.00 0.00 3.33
462 463 6.854778 ACGTGTATGGTTGTTTAAGTTTTGT 58.145 32.000 0.00 0.00 0.00 2.83
463 464 7.743520 AACGTGTATGGTTGTTTAAGTTTTG 57.256 32.000 0.00 0.00 0.00 2.44
467 468 9.709495 TCTATAAACGTGTATGGTTGTTTAAGT 57.291 29.630 8.59 0.00 39.42 2.24
469 470 8.658609 GCTCTATAAACGTGTATGGTTGTTTAA 58.341 33.333 8.59 0.00 39.42 1.52
470 471 8.036575 AGCTCTATAAACGTGTATGGTTGTTTA 58.963 33.333 8.59 0.00 40.04 2.01
471 472 6.877322 AGCTCTATAAACGTGTATGGTTGTTT 59.123 34.615 8.59 0.00 38.10 2.83
472 473 6.403878 AGCTCTATAAACGTGTATGGTTGTT 58.596 36.000 8.59 0.00 0.00 2.83
473 474 5.974108 AGCTCTATAAACGTGTATGGTTGT 58.026 37.500 8.59 0.00 0.00 3.32
474 475 7.169308 CCTTAGCTCTATAAACGTGTATGGTTG 59.831 40.741 8.59 4.86 0.00 3.77
475 476 7.208080 CCTTAGCTCTATAAACGTGTATGGTT 58.792 38.462 8.59 0.28 0.00 3.67
476 477 6.737899 GCCTTAGCTCTATAAACGTGTATGGT 60.738 42.308 8.59 0.43 35.50 3.55
477 478 5.634020 GCCTTAGCTCTATAAACGTGTATGG 59.366 44.000 8.59 5.62 35.50 2.74
478 479 6.144080 GTGCCTTAGCTCTATAAACGTGTATG 59.856 42.308 8.59 0.00 40.80 2.39
479 480 6.214399 GTGCCTTAGCTCTATAAACGTGTAT 58.786 40.000 3.24 3.24 40.80 2.29
480 481 5.585390 GTGCCTTAGCTCTATAAACGTGTA 58.415 41.667 0.00 0.00 40.80 2.90
481 482 4.430908 GTGCCTTAGCTCTATAAACGTGT 58.569 43.478 0.00 0.00 40.80 4.49
482 483 3.486108 CGTGCCTTAGCTCTATAAACGTG 59.514 47.826 0.00 0.00 40.80 4.49
483 484 3.379372 TCGTGCCTTAGCTCTATAAACGT 59.621 43.478 0.00 0.00 40.80 3.99
484 485 3.961182 TCGTGCCTTAGCTCTATAAACG 58.039 45.455 0.00 0.00 40.80 3.60
485 486 5.529791 TGATCGTGCCTTAGCTCTATAAAC 58.470 41.667 0.00 0.00 40.80 2.01
486 487 5.279006 CCTGATCGTGCCTTAGCTCTATAAA 60.279 44.000 0.00 0.00 40.80 1.40
487 488 4.218635 CCTGATCGTGCCTTAGCTCTATAA 59.781 45.833 0.00 0.00 40.80 0.98
488 489 3.759086 CCTGATCGTGCCTTAGCTCTATA 59.241 47.826 0.00 0.00 40.80 1.31
489 490 2.560542 CCTGATCGTGCCTTAGCTCTAT 59.439 50.000 0.00 0.00 40.80 1.98
490 491 1.957177 CCTGATCGTGCCTTAGCTCTA 59.043 52.381 0.00 0.00 40.80 2.43
491 492 0.749649 CCTGATCGTGCCTTAGCTCT 59.250 55.000 0.00 0.00 40.80 4.09
492 493 0.461961 ACCTGATCGTGCCTTAGCTC 59.538 55.000 0.00 0.00 40.80 4.09
493 494 0.905357 AACCTGATCGTGCCTTAGCT 59.095 50.000 0.00 0.00 40.80 3.32
494 495 1.739067 AAACCTGATCGTGCCTTAGC 58.261 50.000 0.00 0.00 40.48 3.09
495 496 4.124851 AGTAAACCTGATCGTGCCTTAG 57.875 45.455 0.00 0.00 0.00 2.18
496 497 4.546829 AAGTAAACCTGATCGTGCCTTA 57.453 40.909 0.00 0.00 0.00 2.69
497 498 3.418684 AAGTAAACCTGATCGTGCCTT 57.581 42.857 0.00 0.00 0.00 4.35
498 499 4.020485 ACTTAAGTAAACCTGATCGTGCCT 60.020 41.667 6.26 0.00 0.00 4.75
499 500 4.251268 ACTTAAGTAAACCTGATCGTGCC 58.749 43.478 6.26 0.00 0.00 5.01
500 501 5.865552 TGTACTTAAGTAAACCTGATCGTGC 59.134 40.000 16.82 1.12 31.52 5.34
501 502 7.878477 TTGTACTTAAGTAAACCTGATCGTG 57.122 36.000 16.82 0.00 31.52 4.35
502 503 7.927629 TGTTTGTACTTAAGTAAACCTGATCGT 59.072 33.333 22.45 0.00 31.52 3.73
503 504 8.301730 TGTTTGTACTTAAGTAAACCTGATCG 57.698 34.615 22.45 0.00 31.52 3.69
514 515 9.490379 CCTCAAGAACTATGTTTGTACTTAAGT 57.510 33.333 13.68 13.68 0.00 2.24
515 516 9.490379 ACCTCAAGAACTATGTTTGTACTTAAG 57.510 33.333 0.00 0.00 0.00 1.85
516 517 9.841295 AACCTCAAGAACTATGTTTGTACTTAA 57.159 29.630 0.00 0.00 0.00 1.85
517 518 9.841295 AAACCTCAAGAACTATGTTTGTACTTA 57.159 29.630 0.00 0.00 0.00 2.24
518 519 8.747538 AAACCTCAAGAACTATGTTTGTACTT 57.252 30.769 0.00 0.00 0.00 2.24
555 556 8.211629 GGTACAGAGGGAGTATGATTTATGTTT 58.788 37.037 0.00 0.00 0.00 2.83
556 557 7.347222 TGGTACAGAGGGAGTATGATTTATGTT 59.653 37.037 0.00 0.00 0.00 2.71
557 558 6.844388 TGGTACAGAGGGAGTATGATTTATGT 59.156 38.462 0.00 0.00 0.00 2.29
558 559 7.303182 TGGTACAGAGGGAGTATGATTTATG 57.697 40.000 0.00 0.00 0.00 1.90
559 560 7.931015 TTGGTACAGAGGGAGTATGATTTAT 57.069 36.000 0.00 0.00 42.39 1.40
560 561 7.743116 TTTGGTACAGAGGGAGTATGATTTA 57.257 36.000 0.00 0.00 42.39 1.40
561 562 6.636454 TTTGGTACAGAGGGAGTATGATTT 57.364 37.500 0.00 0.00 42.39 2.17
562 563 6.636454 TTTTGGTACAGAGGGAGTATGATT 57.364 37.500 0.00 0.00 42.39 2.57
563 564 6.831664 ATTTTGGTACAGAGGGAGTATGAT 57.168 37.500 0.00 0.00 42.39 2.45
564 565 7.743116 TTATTTTGGTACAGAGGGAGTATGA 57.257 36.000 0.00 0.00 42.39 2.15
565 566 8.801882 TTTTATTTTGGTACAGAGGGAGTATG 57.198 34.615 0.00 0.00 42.39 2.39
566 567 8.832735 TCTTTTATTTTGGTACAGAGGGAGTAT 58.167 33.333 0.00 0.00 42.39 2.12
567 568 8.098912 GTCTTTTATTTTGGTACAGAGGGAGTA 58.901 37.037 0.00 0.00 42.39 2.59
568 569 6.940867 GTCTTTTATTTTGGTACAGAGGGAGT 59.059 38.462 0.00 0.00 42.39 3.85
569 570 6.940298 TGTCTTTTATTTTGGTACAGAGGGAG 59.060 38.462 0.00 0.00 42.39 4.30
570 571 6.843752 TGTCTTTTATTTTGGTACAGAGGGA 58.156 36.000 0.00 0.00 42.39 4.20
571 572 7.519032 TTGTCTTTTATTTTGGTACAGAGGG 57.481 36.000 0.00 0.00 42.39 4.30
572 573 9.981114 AAATTGTCTTTTATTTTGGTACAGAGG 57.019 29.630 0.00 0.00 42.39 3.69
574 575 9.255304 GCAAATTGTCTTTTATTTTGGTACAGA 57.745 29.630 0.00 0.00 42.39 3.41
575 576 9.039870 TGCAAATTGTCTTTTATTTTGGTACAG 57.960 29.630 0.00 0.00 42.39 2.74
576 577 8.948631 TGCAAATTGTCTTTTATTTTGGTACA 57.051 26.923 0.00 0.00 0.00 2.90
577 578 9.040939 ACTGCAAATTGTCTTTTATTTTGGTAC 57.959 29.630 0.00 0.00 0.00 3.34
578 579 9.606631 AACTGCAAATTGTCTTTTATTTTGGTA 57.393 25.926 0.00 0.00 0.00 3.25
579 580 8.504812 AACTGCAAATTGTCTTTTATTTTGGT 57.495 26.923 0.00 0.00 0.00 3.67
580 581 8.610896 TGAACTGCAAATTGTCTTTTATTTTGG 58.389 29.630 0.00 0.00 0.00 3.28
581 582 9.985318 TTGAACTGCAAATTGTCTTTTATTTTG 57.015 25.926 0.00 0.00 32.46 2.44
587 588 8.947055 ACTAATTGAACTGCAAATTGTCTTTT 57.053 26.923 4.66 0.00 40.48 2.27
588 589 9.683069 CTACTAATTGAACTGCAAATTGTCTTT 57.317 29.630 4.66 0.00 40.48 2.52
589 590 8.850156 ACTACTAATTGAACTGCAAATTGTCTT 58.150 29.630 4.66 0.00 40.48 3.01
590 591 8.396272 ACTACTAATTGAACTGCAAATTGTCT 57.604 30.769 4.66 0.00 40.48 3.41
629 630 9.616156 TGTACTACTAATTTTCCTCAACAACAA 57.384 29.630 0.00 0.00 0.00 2.83
630 631 9.616156 TTGTACTACTAATTTTCCTCAACAACA 57.384 29.630 0.00 0.00 0.00 3.33
632 633 9.841295 ACTTGTACTACTAATTTTCCTCAACAA 57.159 29.630 0.00 0.00 0.00 2.83
633 634 9.841295 AACTTGTACTACTAATTTTCCTCAACA 57.159 29.630 0.00 0.00 0.00 3.33
646 647 8.689972 GGTTGGCTCTATAAACTTGTACTACTA 58.310 37.037 0.00 0.00 0.00 1.82
647 648 7.179694 TGGTTGGCTCTATAAACTTGTACTACT 59.820 37.037 0.00 0.00 0.00 2.57
648 649 7.325694 TGGTTGGCTCTATAAACTTGTACTAC 58.674 38.462 0.00 0.00 0.00 2.73
649 650 7.398047 TCTGGTTGGCTCTATAAACTTGTACTA 59.602 37.037 0.00 0.00 0.00 1.82
650 651 6.212791 TCTGGTTGGCTCTATAAACTTGTACT 59.787 38.462 0.00 0.00 0.00 2.73
680 681 7.061905 GCAATATAATCTGATCATGCTGTTTGC 59.938 37.037 0.00 3.95 43.25 3.68
681 682 8.079809 TGCAATATAATCTGATCATGCTGTTTG 58.920 33.333 13.19 6.59 33.87 2.93
686 687 6.374613 CCTGTGCAATATAATCTGATCATGCT 59.625 38.462 13.19 0.00 33.87 3.79
698 699 8.664992 TGTTCCTATATTCCCTGTGCAATATAA 58.335 33.333 0.00 0.00 30.51 0.98
780 785 4.489679 AAAAAGTTCCGCTCAGATCAAC 57.510 40.909 0.00 0.00 0.00 3.18
817 823 5.320723 TGTCTGCAAAACGAATAATAAGCG 58.679 37.500 0.00 0.00 0.00 4.68
821 827 6.795098 ACACTGTCTGCAAAACGAATAATA 57.205 33.333 0.00 0.00 0.00 0.98
825 831 3.694734 CAACACTGTCTGCAAAACGAAT 58.305 40.909 0.00 0.00 0.00 3.34
826 832 2.730715 GCAACACTGTCTGCAAAACGAA 60.731 45.455 6.53 0.00 38.48 3.85
828 834 1.191096 GCAACACTGTCTGCAAAACG 58.809 50.000 6.53 0.00 38.48 3.60
829 835 2.276472 TGCAACACTGTCTGCAAAAC 57.724 45.000 10.73 0.00 45.25 2.43
833 839 2.293122 GGTATTTGCAACACTGTCTGCA 59.707 45.455 0.00 9.41 46.50 4.41
854 894 3.644823 TGATTTTGCAACATGCTGTGAG 58.355 40.909 2.08 0.00 45.31 3.51
883 927 2.883828 CGGACTGCCCACTTCAGGT 61.884 63.158 0.00 0.00 35.94 4.00
924 968 1.339535 GCTGTCCTTCTTCCTTCCTGG 60.340 57.143 0.00 0.00 37.10 4.45
939 983 7.013369 TCCTTCTTCCTTTTCTTTTTAGCTGTC 59.987 37.037 0.00 0.00 0.00 3.51
940 984 6.833933 TCCTTCTTCCTTTTCTTTTTAGCTGT 59.166 34.615 0.00 0.00 0.00 4.40
941 985 7.142021 GTCCTTCTTCCTTTTCTTTTTAGCTG 58.858 38.462 0.00 0.00 0.00 4.24
942 986 6.265649 GGTCCTTCTTCCTTTTCTTTTTAGCT 59.734 38.462 0.00 0.00 0.00 3.32
943 987 6.448006 GGTCCTTCTTCCTTTTCTTTTTAGC 58.552 40.000 0.00 0.00 0.00 3.09
944 988 6.485648 TCGGTCCTTCTTCCTTTTCTTTTTAG 59.514 38.462 0.00 0.00 0.00 1.85
945 989 6.358991 TCGGTCCTTCTTCCTTTTCTTTTTA 58.641 36.000 0.00 0.00 0.00 1.52
946 990 5.198207 TCGGTCCTTCTTCCTTTTCTTTTT 58.802 37.500 0.00 0.00 0.00 1.94
947 991 4.788679 TCGGTCCTTCTTCCTTTTCTTTT 58.211 39.130 0.00 0.00 0.00 2.27
948 992 4.432980 TCGGTCCTTCTTCCTTTTCTTT 57.567 40.909 0.00 0.00 0.00 2.52
949 993 4.390264 CTTCGGTCCTTCTTCCTTTTCTT 58.610 43.478 0.00 0.00 0.00 2.52
950 994 3.244596 CCTTCGGTCCTTCTTCCTTTTCT 60.245 47.826 0.00 0.00 0.00 2.52
951 995 3.075148 CCTTCGGTCCTTCTTCCTTTTC 58.925 50.000 0.00 0.00 0.00 2.29
952 996 2.709397 TCCTTCGGTCCTTCTTCCTTTT 59.291 45.455 0.00 0.00 0.00 2.27
953 997 2.038689 GTCCTTCGGTCCTTCTTCCTTT 59.961 50.000 0.00 0.00 0.00 3.11
954 998 1.624312 GTCCTTCGGTCCTTCTTCCTT 59.376 52.381 0.00 0.00 0.00 3.36
955 999 1.268066 GTCCTTCGGTCCTTCTTCCT 58.732 55.000 0.00 0.00 0.00 3.36
956 1000 0.249676 GGTCCTTCGGTCCTTCTTCC 59.750 60.000 0.00 0.00 0.00 3.46
957 1001 0.108756 CGGTCCTTCGGTCCTTCTTC 60.109 60.000 0.00 0.00 0.00 2.87
958 1002 0.541296 TCGGTCCTTCGGTCCTTCTT 60.541 55.000 0.00 0.00 0.00 2.52
959 1003 0.541296 TTCGGTCCTTCGGTCCTTCT 60.541 55.000 0.00 0.00 0.00 2.85
960 1004 0.108756 CTTCGGTCCTTCGGTCCTTC 60.109 60.000 0.00 0.00 0.00 3.46
961 1005 1.542187 CCTTCGGTCCTTCGGTCCTT 61.542 60.000 0.00 0.00 0.00 3.36
962 1006 1.982938 CCTTCGGTCCTTCGGTCCT 60.983 63.158 0.00 0.00 0.00 3.85
963 1007 1.946475 CTCCTTCGGTCCTTCGGTCC 61.946 65.000 0.00 0.00 0.00 4.46
964 1008 1.511768 CTCCTTCGGTCCTTCGGTC 59.488 63.158 0.00 0.00 0.00 4.79
965 1009 2.647158 GCTCCTTCGGTCCTTCGGT 61.647 63.158 0.00 0.00 0.00 4.69
966 1010 2.184579 GCTCCTTCGGTCCTTCGG 59.815 66.667 0.00 0.00 0.00 4.30
967 1011 1.446272 GTGCTCCTTCGGTCCTTCG 60.446 63.158 0.00 0.00 0.00 3.79
1083 1134 3.940480 TGGAGGAGGAGGTGGGCA 61.940 66.667 0.00 0.00 0.00 5.36
1097 1148 2.856988 GGAAGGGGTGGTGGTGGA 60.857 66.667 0.00 0.00 0.00 4.02
1106 1157 1.461849 TGGTTGTACGGGAAGGGGT 60.462 57.895 0.00 0.00 0.00 4.95
1230 1293 0.391263 GGGCGACGTTGAAGGAGAAT 60.391 55.000 7.08 0.00 0.00 2.40
1429 1499 2.355481 GACGGTGTGGTCGTGGTC 60.355 66.667 0.00 0.00 41.22 4.02
1936 2092 3.249320 CACCATAGACAAATGATCAGGCG 59.751 47.826 0.09 0.00 0.00 5.52
1960 2116 1.407618 AGCGTACCTGCGTCATCATAA 59.592 47.619 0.00 0.00 40.67 1.90
1980 2148 1.071542 TCCTTTGACATGCCGTTCTGA 59.928 47.619 0.00 0.00 0.00 3.27
2041 2217 6.326583 CCTACCAAGGTTATCTTATCTGGACA 59.673 42.308 0.00 0.00 38.19 4.02
2150 2326 2.870435 GCAGTCCCAACGTAGACATTGT 60.870 50.000 13.73 0.00 35.38 2.71
2202 2379 5.599999 ACACTTGTATGGCTCTAGTAAGG 57.400 43.478 0.00 0.00 0.00 2.69
2229 2406 3.316071 TCATTCGTGCATGGCAATTTT 57.684 38.095 5.98 0.00 41.47 1.82
2243 2420 2.789092 GCGTTCCATGAAGCTTCATTCG 60.789 50.000 34.17 30.73 45.13 3.34
2323 2507 1.283029 CCCTTCCTGCTTCCTCATCAA 59.717 52.381 0.00 0.00 0.00 2.57
2385 4767 1.287815 CAACCCTGCATGCACACAG 59.712 57.895 18.46 7.02 0.00 3.66
2703 5106 4.314121 GTGCAGAGTCATCCAATCTATCC 58.686 47.826 0.00 0.00 0.00 2.59
2935 5350 4.912214 TGCAATACTGAATTTGATCTGCG 58.088 39.130 0.00 0.00 0.00 5.18
3034 5453 4.478206 TCTGCTCCCTGAGATAAAACAG 57.522 45.455 0.00 0.00 0.00 3.16
3041 5461 1.836802 GAGGTTTCTGCTCCCTGAGAT 59.163 52.381 0.00 0.00 0.00 2.75
3068 5489 7.137490 ACATCCGACATTTATATTCAGCATG 57.863 36.000 0.00 0.00 37.54 4.06
3115 5538 5.598830 TGGTATCCAGTCATAGAGAAGGAAC 59.401 44.000 0.00 0.00 36.59 3.62
3164 5587 9.927081 ATCCAAAAATCTCTGTTGATAGGTTAT 57.073 29.630 0.00 0.00 0.00 1.89
3166 5589 8.655935 AATCCAAAAATCTCTGTTGATAGGTT 57.344 30.769 0.00 0.00 0.00 3.50
3183 5606 3.940221 GCATGCTGCCATAAAATCCAAAA 59.060 39.130 11.37 0.00 37.42 2.44
3188 5611 5.192327 ACTTAGCATGCTGCCATAAAATC 57.808 39.130 30.42 0.00 46.52 2.17
3261 5689 7.435068 TGAAAGTTTCAAGGTAGCTACAATC 57.565 36.000 24.75 8.28 36.59 2.67
3262 5690 7.817418 TTGAAAGTTTCAAGGTAGCTACAAT 57.183 32.000 23.91 10.42 44.21 2.71
3290 5719 8.093659 TGAGTACATTGACGAATTGAAATCAA 57.906 30.769 0.00 0.00 40.51 2.57
3291 5720 7.665561 TGAGTACATTGACGAATTGAAATCA 57.334 32.000 0.00 0.00 0.00 2.57
3304 5733 4.154015 CGCAGAACCAATTGAGTACATTGA 59.846 41.667 7.12 0.00 0.00 2.57
3310 5739 3.678056 ACTCGCAGAACCAATTGAGTA 57.322 42.857 7.12 0.00 35.10 2.59
3323 5752 1.136141 GCATGTTCTGACAACTCGCAG 60.136 52.381 0.00 0.00 39.66 5.18
3418 5903 6.883744 TGCTATTTTTCCAAAAACTCCAACT 58.116 32.000 0.00 0.00 40.33 3.16
3475 5967 3.493028 TGCTGACTTGGAGCAAACA 57.507 47.368 0.00 0.00 43.47 2.83
3802 6294 5.337169 GCAGTAAGAATATCCCAGCTCCTAG 60.337 48.000 0.00 0.00 0.00 3.02
3803 6295 4.528596 GCAGTAAGAATATCCCAGCTCCTA 59.471 45.833 0.00 0.00 0.00 2.94
3869 6361 2.859165 TCTGCCTTGATCCGTTCTTT 57.141 45.000 0.00 0.00 0.00 2.52
3875 6367 3.242543 CGAAAGAATTCTGCCTTGATCCG 60.243 47.826 9.17 0.00 33.17 4.18
3884 6376 8.394121 AGAAGTATTTGATCGAAAGAATTCTGC 58.606 33.333 18.27 3.64 44.37 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.