Multiple sequence alignment - TraesCS1B01G108800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G108800 chr1B 100.000 6795 0 0 1 6795 120889764 120882970 0.000000e+00 12549.0
1 TraesCS1B01G108800 chr1B 98.889 90 1 0 2508 2597 498863927 498863838 1.960000e-35 161.0
2 TraesCS1B01G108800 chr1B 82.812 64 10 1 5902 5964 225811702 225811765 1.000000e-03 56.5
3 TraesCS1B01G108800 chr1A 95.773 3785 102 18 2615 6375 108695972 108692222 0.000000e+00 6050.0
4 TraesCS1B01G108800 chr1A 96.181 1676 55 8 867 2535 108697659 108695986 0.000000e+00 2732.0
5 TraesCS1B01G108800 chr1A 91.837 441 27 6 6359 6795 108691638 108691203 2.100000e-169 606.0
6 TraesCS1B01G108800 chr1A 85.284 299 40 2 543 839 526764466 526764762 8.560000e-79 305.0
7 TraesCS1B01G108800 chr1A 85.938 64 8 1 5902 5964 235687486 235687549 4.400000e-07 67.6
8 TraesCS1B01G108800 chr1D 96.946 3176 80 13 2620 5787 77368384 77365218 0.000000e+00 5312.0
9 TraesCS1B01G108800 chr1D 96.238 1701 57 5 842 2535 77370102 77368402 0.000000e+00 2780.0
10 TraesCS1B01G108800 chr1D 86.104 1101 79 34 5739 6795 77365225 77364155 0.000000e+00 1118.0
11 TraesCS1B01G108800 chr1D 89.209 556 52 6 1 549 447926851 447926297 0.000000e+00 688.0
12 TraesCS1B01G108800 chr1D 88.462 260 27 3 543 799 77375466 77375207 1.840000e-80 311.0
13 TraesCS1B01G108800 chr1D 85.938 64 8 1 5902 5964 164421698 164421635 4.400000e-07 67.6
14 TraesCS1B01G108800 chr1D 100.000 35 0 0 5900 5934 222025213 222025179 1.580000e-06 65.8
15 TraesCS1B01G108800 chr1D 100.000 34 0 0 5901 5934 464860528 464860495 5.690000e-06 63.9
16 TraesCS1B01G108800 chr1D 92.857 42 1 2 5901 5940 258339593 258339634 7.360000e-05 60.2
17 TraesCS1B01G108800 chr1D 100.000 31 0 0 5739 5769 77365183 77365153 2.650000e-04 58.4
18 TraesCS1B01G108800 chr4A 90.876 548 46 3 2 545 6818886 6819433 0.000000e+00 732.0
19 TraesCS1B01G108800 chr4A 89.781 548 52 3 1 545 708541431 708541977 0.000000e+00 699.0
20 TraesCS1B01G108800 chr4A 97.849 93 1 1 2505 2597 4152059 4151968 7.050000e-35 159.0
21 TraesCS1B01G108800 chr5D 90.164 549 50 4 1 545 61484909 61485457 0.000000e+00 712.0
22 TraesCS1B01G108800 chr5D 85.382 301 40 4 543 840 35216867 35216568 6.620000e-80 309.0
23 TraesCS1B01G108800 chr5D 96.875 96 2 1 2501 2596 430647633 430647539 7.050000e-35 159.0
24 TraesCS1B01G108800 chr5B 89.945 547 51 3 2 544 311547794 311547248 0.000000e+00 702.0
25 TraesCS1B01G108800 chr5B 96.875 96 2 1 2509 2603 617142309 617142214 7.050000e-35 159.0
26 TraesCS1B01G108800 chr6A 89.617 549 51 5 1 544 37409737 37410284 0.000000e+00 693.0
27 TraesCS1B01G108800 chr6A 86.581 313 36 5 543 853 431914870 431915178 2.350000e-89 340.0
28 TraesCS1B01G108800 chr4D 89.617 549 52 4 1 545 87960255 87960802 0.000000e+00 693.0
29 TraesCS1B01G108800 chr4D 84.797 296 44 1 543 837 419343332 419343037 5.150000e-76 296.0
30 TraesCS1B01G108800 chr4D 83.333 72 5 3 5900 5964 139045055 139044984 7.360000e-05 60.2
31 TraesCS1B01G108800 chr4D 97.143 35 1 0 5900 5934 402560203 402560169 7.360000e-05 60.2
32 TraesCS1B01G108800 chr2D 89.599 548 52 4 1 544 579754908 579754362 0.000000e+00 691.0
33 TraesCS1B01G108800 chr2D 94.286 35 2 0 6287 6321 14774458 14774492 3.000000e-03 54.7
34 TraesCS1B01G108800 chr2A 89.312 552 56 2 1 549 726299869 726299318 0.000000e+00 689.0
35 TraesCS1B01G108800 chr3A 85.473 296 36 5 542 834 441067302 441067593 1.110000e-77 302.0
36 TraesCS1B01G108800 chr3A 96.842 95 2 1 2509 2602 536885147 536885241 2.540000e-34 158.0
37 TraesCS1B01G108800 chr3A 100.000 35 0 0 5900 5934 67305614 67305580 1.580000e-06 65.8
38 TraesCS1B01G108800 chr7A 85.185 297 39 3 543 837 490675119 490675412 3.980000e-77 300.0
39 TraesCS1B01G108800 chr7A 84.615 78 9 2 5900 5974 504220423 504220500 2.630000e-09 75.0
40 TraesCS1B01G108800 chr7A 96.970 33 1 0 6287 6319 350423592 350423560 1.000000e-03 56.5
41 TraesCS1B01G108800 chr3B 84.228 298 43 3 543 837 199614333 199614037 3.100000e-73 287.0
42 TraesCS1B01G108800 chr3B 84.122 296 45 2 543 837 199558650 199558356 1.120000e-72 285.0
43 TraesCS1B01G108800 chr3B 95.833 96 4 0 2499 2594 446028856 446028951 9.120000e-34 156.0
44 TraesCS1B01G108800 chr3B 91.589 107 7 2 2495 2601 816303144 816303248 5.490000e-31 147.0
45 TraesCS1B01G108800 chr3B 95.122 41 2 0 6287 6327 156572825 156572865 1.580000e-06 65.8
46 TraesCS1B01G108800 chr3B 100.000 28 0 0 6285 6312 433371706 433371733 1.200000e-02 52.8
47 TraesCS1B01G108800 chr2B 98.889 90 1 0 2509 2598 647539357 647539446 1.960000e-35 161.0
48 TraesCS1B01G108800 chr2B 80.645 93 10 4 5890 5974 765398033 765397941 1.580000e-06 65.8
49 TraesCS1B01G108800 chr3D 93.396 106 3 4 2509 2612 511662865 511662762 3.280000e-33 154.0
50 TraesCS1B01G108800 chr3D 95.122 41 2 0 6287 6327 104705315 104705355 1.580000e-06 65.8
51 TraesCS1B01G108800 chr7D 88.333 60 5 1 5900 5957 431918867 431918926 3.400000e-08 71.3
52 TraesCS1B01G108800 chr7D 100.000 35 0 0 5900 5934 299188939 299188973 1.580000e-06 65.8
53 TraesCS1B01G108800 chr7D 96.970 33 0 1 6287 6318 622123620 622123652 3.000000e-03 54.7
54 TraesCS1B01G108800 chr7D 100.000 28 0 0 2610 2637 382727415 382727388 1.200000e-02 52.8
55 TraesCS1B01G108800 chr4B 85.507 69 7 2 5900 5965 548104574 548104642 1.220000e-07 69.4
56 TraesCS1B01G108800 chr7B 95.238 42 2 0 6287 6328 428965929 428965888 4.400000e-07 67.6
57 TraesCS1B01G108800 chrUn 97.143 35 1 0 5900 5934 50304280 50304246 7.360000e-05 60.2
58 TraesCS1B01G108800 chr6D 96.970 33 1 0 5902 5934 93644405 93644437 1.000000e-03 56.5
59 TraesCS1B01G108800 chr6B 97.059 34 0 1 6287 6320 129241590 129241558 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G108800 chr1B 120882970 120889764 6794 True 12549.000000 12549 100.000 1 6795 1 chr1B.!!$R1 6794
1 TraesCS1B01G108800 chr1A 108691203 108697659 6456 True 3129.333333 6050 94.597 867 6795 3 chr1A.!!$R1 5928
2 TraesCS1B01G108800 chr1D 77364155 77370102 5947 True 2317.100000 5312 94.822 842 6795 4 chr1D.!!$R6 5953
3 TraesCS1B01G108800 chr1D 447926297 447926851 554 True 688.000000 688 89.209 1 549 1 chr1D.!!$R4 548
4 TraesCS1B01G108800 chr4A 6818886 6819433 547 False 732.000000 732 90.876 2 545 1 chr4A.!!$F1 543
5 TraesCS1B01G108800 chr4A 708541431 708541977 546 False 699.000000 699 89.781 1 545 1 chr4A.!!$F2 544
6 TraesCS1B01G108800 chr5D 61484909 61485457 548 False 712.000000 712 90.164 1 545 1 chr5D.!!$F1 544
7 TraesCS1B01G108800 chr5B 311547248 311547794 546 True 702.000000 702 89.945 2 544 1 chr5B.!!$R1 542
8 TraesCS1B01G108800 chr6A 37409737 37410284 547 False 693.000000 693 89.617 1 544 1 chr6A.!!$F1 543
9 TraesCS1B01G108800 chr4D 87960255 87960802 547 False 693.000000 693 89.617 1 545 1 chr4D.!!$F1 544
10 TraesCS1B01G108800 chr2D 579754362 579754908 546 True 691.000000 691 89.599 1 544 1 chr2D.!!$R1 543
11 TraesCS1B01G108800 chr2A 726299318 726299869 551 True 689.000000 689 89.312 1 549 1 chr2A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 614 0.315886 CAATGCAGTTTGCTCAGCCA 59.684 50.000 0.0 0.0 45.31 4.75 F
2522 2543 0.108945 CAACGTACTCCCTCCGTTCC 60.109 60.000 0.0 0.0 42.34 3.62 F
2971 2992 0.318107 CAGCAGTCAAAAGGTTGGCG 60.318 55.000 0.0 0.0 44.44 5.69 F
3590 3611 3.027412 TGTCCAAAACTTTAAGCCTGCA 58.973 40.909 0.0 0.0 0.00 4.41 F
5322 5349 0.174845 TTGTATTCCCGACGCAGGAG 59.825 55.000 0.0 0.0 34.08 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2579 2600 1.358445 AGGAAGTACTCCCTCCGTTCT 59.642 52.381 0.00 0.0 46.81 3.01 R
3854 3875 3.744942 CAGCGGAATCAATATCTCCACAG 59.255 47.826 0.00 0.0 0.00 3.66 R
4850 4877 3.126000 GGAAGCATTAGCACTTCTGTGAC 59.874 47.826 0.00 0.0 46.55 3.67 R
5394 5421 1.074727 TGAAAATTTCTCCTCGGCCCA 59.925 47.619 7.29 0.0 0.00 5.36 R
6632 7351 0.681733 ATGGACAGACGCTGACTTGT 59.318 50.000 12.77 0.0 35.18 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.577059 GCGGAGTGGATCACGGAA 59.423 61.111 0.00 0.00 39.64 4.30
94 98 2.185608 GCTCAGGAAGGCGAGACC 59.814 66.667 0.00 0.00 39.61 3.85
111 115 2.257371 CGCGACGACTCCCTGAAA 59.743 61.111 0.00 0.00 0.00 2.69
152 156 0.531200 CTAGTCCCTGTTCCGGTGAC 59.469 60.000 0.00 2.16 0.00 3.67
171 175 4.509230 GTGACGTGTCTAGTATCATCGGTA 59.491 45.833 0.00 0.00 0.00 4.02
187 191 1.252904 GGTAGGCGTGTGGAGGTGTA 61.253 60.000 0.00 0.00 0.00 2.90
208 212 2.589720 TCTCCGGCGGATATGTCTTTA 58.410 47.619 31.23 2.24 0.00 1.85
218 222 5.758296 GCGGATATGTCTTTAGTGGATTTGA 59.242 40.000 0.00 0.00 0.00 2.69
227 233 7.069455 TGTCTTTAGTGGATTTGATCGGATCTA 59.931 37.037 18.16 8.70 0.00 1.98
231 237 6.425210 AGTGGATTTGATCGGATCTATTCA 57.575 37.500 18.16 13.11 0.00 2.57
238 244 5.966742 TGATCGGATCTATTCATCGTTCT 57.033 39.130 18.16 0.00 0.00 3.01
267 273 2.894765 TCGTGTGTCTTCAGGTTGGATA 59.105 45.455 0.00 0.00 0.00 2.59
297 303 0.317160 ATATTCTTCATCGGCGGCGA 59.683 50.000 36.40 36.40 0.00 5.54
307 313 2.178273 GGCGGCGATTGTTGTTCC 59.822 61.111 12.98 0.00 0.00 3.62
336 342 3.393687 TGGTTCTATGGGACCTTAGCAT 58.606 45.455 8.20 0.00 0.00 3.79
346 352 3.135530 GGGACCTTAGCATGATGACTTCT 59.864 47.826 0.00 0.00 0.00 2.85
357 363 5.509771 CATGATGACTTCTCGACTGTCTAG 58.490 45.833 6.21 4.58 0.00 2.43
459 465 1.030457 CGCTAGGTGGTCTACGGATT 58.970 55.000 0.00 0.00 0.00 3.01
566 574 2.782163 CGATACACGTCGTTCATCAGT 58.218 47.619 13.57 3.63 36.88 3.41
567 575 2.776765 CGATACACGTCGTTCATCAGTC 59.223 50.000 13.57 0.00 36.88 3.51
568 576 3.485381 CGATACACGTCGTTCATCAGTCT 60.485 47.826 13.57 0.00 36.88 3.24
569 577 4.260091 CGATACACGTCGTTCATCAGTCTA 60.260 45.833 13.57 0.00 36.88 2.59
570 578 3.473093 ACACGTCGTTCATCAGTCTAG 57.527 47.619 0.00 0.00 0.00 2.43
571 579 2.812591 ACACGTCGTTCATCAGTCTAGT 59.187 45.455 0.00 0.00 0.00 2.57
572 580 3.252701 ACACGTCGTTCATCAGTCTAGTT 59.747 43.478 0.00 0.00 0.00 2.24
573 581 3.846896 CACGTCGTTCATCAGTCTAGTTC 59.153 47.826 0.00 0.00 0.00 3.01
574 582 3.501062 ACGTCGTTCATCAGTCTAGTTCA 59.499 43.478 0.00 0.00 0.00 3.18
575 583 4.092120 CGTCGTTCATCAGTCTAGTTCAG 58.908 47.826 0.00 0.00 0.00 3.02
576 584 4.416620 GTCGTTCATCAGTCTAGTTCAGG 58.583 47.826 0.00 0.00 0.00 3.86
577 585 3.119459 TCGTTCATCAGTCTAGTTCAGGC 60.119 47.826 0.00 0.00 0.00 4.85
578 586 3.367395 CGTTCATCAGTCTAGTTCAGGCA 60.367 47.826 0.00 0.00 0.00 4.75
579 587 4.180057 GTTCATCAGTCTAGTTCAGGCAG 58.820 47.826 0.00 0.00 0.00 4.85
580 588 2.762887 TCATCAGTCTAGTTCAGGCAGG 59.237 50.000 0.00 0.00 0.00 4.85
581 589 1.561643 TCAGTCTAGTTCAGGCAGGG 58.438 55.000 0.00 0.00 0.00 4.45
582 590 1.203187 TCAGTCTAGTTCAGGCAGGGT 60.203 52.381 0.00 0.00 0.00 4.34
583 591 1.205893 CAGTCTAGTTCAGGCAGGGTC 59.794 57.143 0.00 0.00 0.00 4.46
584 592 1.077993 AGTCTAGTTCAGGCAGGGTCT 59.922 52.381 0.00 0.00 0.00 3.85
585 593 2.312140 AGTCTAGTTCAGGCAGGGTCTA 59.688 50.000 0.00 0.00 0.00 2.59
586 594 3.052490 AGTCTAGTTCAGGCAGGGTCTAT 60.052 47.826 0.00 0.00 0.00 1.98
587 595 3.319689 GTCTAGTTCAGGCAGGGTCTATC 59.680 52.174 0.00 0.00 0.00 2.08
588 596 2.254152 AGTTCAGGCAGGGTCTATCA 57.746 50.000 0.00 0.00 0.00 2.15
589 597 2.551270 AGTTCAGGCAGGGTCTATCAA 58.449 47.619 0.00 0.00 0.00 2.57
590 598 3.118531 AGTTCAGGCAGGGTCTATCAAT 58.881 45.455 0.00 0.00 0.00 2.57
591 599 3.118112 AGTTCAGGCAGGGTCTATCAATG 60.118 47.826 0.00 0.00 0.00 2.82
592 600 1.141657 TCAGGCAGGGTCTATCAATGC 59.858 52.381 0.00 0.00 36.16 3.56
593 601 1.134007 CAGGCAGGGTCTATCAATGCA 60.134 52.381 0.00 0.00 38.63 3.96
594 602 1.142465 AGGCAGGGTCTATCAATGCAG 59.858 52.381 0.00 0.00 38.63 4.41
595 603 1.133976 GGCAGGGTCTATCAATGCAGT 60.134 52.381 0.00 0.00 38.63 4.40
596 604 2.648059 GCAGGGTCTATCAATGCAGTT 58.352 47.619 0.00 0.00 36.88 3.16
597 605 3.019564 GCAGGGTCTATCAATGCAGTTT 58.980 45.455 0.00 0.00 36.88 2.66
598 606 3.181493 GCAGGGTCTATCAATGCAGTTTG 60.181 47.826 0.00 0.00 36.88 2.93
599 607 3.019564 AGGGTCTATCAATGCAGTTTGC 58.980 45.455 0.00 0.00 45.29 3.68
600 608 3.019564 GGGTCTATCAATGCAGTTTGCT 58.980 45.455 2.48 0.00 45.31 3.91
601 609 3.065925 GGGTCTATCAATGCAGTTTGCTC 59.934 47.826 2.48 0.00 45.31 4.26
602 610 3.691118 GGTCTATCAATGCAGTTTGCTCA 59.309 43.478 2.48 0.00 45.31 4.26
603 611 4.201891 GGTCTATCAATGCAGTTTGCTCAG 60.202 45.833 2.48 0.00 45.31 3.35
604 612 2.649331 ATCAATGCAGTTTGCTCAGC 57.351 45.000 2.48 0.00 45.31 4.26
605 613 0.599558 TCAATGCAGTTTGCTCAGCC 59.400 50.000 0.00 0.00 45.31 4.85
606 614 0.315886 CAATGCAGTTTGCTCAGCCA 59.684 50.000 0.00 0.00 45.31 4.75
607 615 1.042229 AATGCAGTTTGCTCAGCCAA 58.958 45.000 0.00 0.00 45.31 4.52
608 616 1.042229 ATGCAGTTTGCTCAGCCAAA 58.958 45.000 0.00 0.00 45.31 3.28
609 617 0.822811 TGCAGTTTGCTCAGCCAAAA 59.177 45.000 0.00 0.00 45.31 2.44
610 618 1.206610 TGCAGTTTGCTCAGCCAAAAA 59.793 42.857 0.00 0.00 45.31 1.94
629 637 5.351948 AAAAATACTTTGTTGTGGTGCCT 57.648 34.783 0.00 0.00 0.00 4.75
630 638 5.351948 AAAATACTTTGTTGTGGTGCCTT 57.648 34.783 0.00 0.00 0.00 4.35
631 639 6.472686 AAAATACTTTGTTGTGGTGCCTTA 57.527 33.333 0.00 0.00 0.00 2.69
632 640 6.472686 AAATACTTTGTTGTGGTGCCTTAA 57.527 33.333 0.00 0.00 0.00 1.85
633 641 5.705609 ATACTTTGTTGTGGTGCCTTAAG 57.294 39.130 0.00 0.00 0.00 1.85
634 642 3.626930 ACTTTGTTGTGGTGCCTTAAGA 58.373 40.909 3.36 0.00 0.00 2.10
635 643 4.020543 ACTTTGTTGTGGTGCCTTAAGAA 58.979 39.130 3.36 0.00 0.00 2.52
636 644 4.464597 ACTTTGTTGTGGTGCCTTAAGAAA 59.535 37.500 3.36 0.00 0.00 2.52
637 645 5.128663 ACTTTGTTGTGGTGCCTTAAGAAAT 59.871 36.000 3.36 0.00 0.00 2.17
638 646 4.846779 TGTTGTGGTGCCTTAAGAAATC 57.153 40.909 3.36 0.00 0.00 2.17
639 647 4.211125 TGTTGTGGTGCCTTAAGAAATCA 58.789 39.130 3.36 0.00 0.00 2.57
640 648 4.646945 TGTTGTGGTGCCTTAAGAAATCAA 59.353 37.500 3.36 0.00 0.00 2.57
641 649 5.127845 TGTTGTGGTGCCTTAAGAAATCAAA 59.872 36.000 3.36 0.00 0.00 2.69
642 650 6.183360 TGTTGTGGTGCCTTAAGAAATCAAAT 60.183 34.615 3.36 0.00 0.00 2.32
643 651 6.024552 TGTGGTGCCTTAAGAAATCAAATC 57.975 37.500 3.36 0.00 0.00 2.17
644 652 5.095490 GTGGTGCCTTAAGAAATCAAATCG 58.905 41.667 3.36 0.00 0.00 3.34
645 653 4.764823 TGGTGCCTTAAGAAATCAAATCGT 59.235 37.500 3.36 0.00 0.00 3.73
646 654 5.095490 GGTGCCTTAAGAAATCAAATCGTG 58.905 41.667 3.36 0.00 0.00 4.35
647 655 5.106317 GGTGCCTTAAGAAATCAAATCGTGA 60.106 40.000 3.36 0.00 41.67 4.35
649 657 6.688813 GTGCCTTAAGAAATCAAATCGTGATC 59.311 38.462 3.36 0.00 46.80 2.92
650 658 6.374053 TGCCTTAAGAAATCAAATCGTGATCA 59.626 34.615 3.36 0.00 46.80 2.92
651 659 6.909357 GCCTTAAGAAATCAAATCGTGATCAG 59.091 38.462 3.36 0.00 46.80 2.90
652 660 7.201644 GCCTTAAGAAATCAAATCGTGATCAGA 60.202 37.037 3.36 0.00 46.80 3.27
653 661 8.119226 CCTTAAGAAATCAAATCGTGATCAGAC 58.881 37.037 3.36 0.00 46.80 3.51
654 662 6.428385 AAGAAATCAAATCGTGATCAGACC 57.572 37.500 0.00 0.00 46.80 3.85
655 663 5.491070 AGAAATCAAATCGTGATCAGACCA 58.509 37.500 0.00 0.00 46.80 4.02
656 664 6.118170 AGAAATCAAATCGTGATCAGACCAT 58.882 36.000 0.00 0.00 46.80 3.55
657 665 5.998454 AATCAAATCGTGATCAGACCATC 57.002 39.130 0.00 0.00 46.80 3.51
658 666 4.470334 TCAAATCGTGATCAGACCATCA 57.530 40.909 0.00 0.00 0.00 3.07
659 667 4.183865 TCAAATCGTGATCAGACCATCAC 58.816 43.478 0.00 3.86 46.40 3.06
667 675 5.632244 TGATCAGACCATCACATTTGTTG 57.368 39.130 0.00 0.00 0.00 3.33
668 676 5.072055 TGATCAGACCATCACATTTGTTGT 58.928 37.500 0.00 0.00 39.91 3.32
669 677 5.535783 TGATCAGACCATCACATTTGTTGTT 59.464 36.000 0.00 0.00 36.00 2.83
670 678 5.850557 TCAGACCATCACATTTGTTGTTT 57.149 34.783 0.00 0.00 36.00 2.83
671 679 6.219417 TCAGACCATCACATTTGTTGTTTT 57.781 33.333 0.00 0.00 36.00 2.43
672 680 6.638610 TCAGACCATCACATTTGTTGTTTTT 58.361 32.000 0.00 0.00 36.00 1.94
673 681 6.534436 TCAGACCATCACATTTGTTGTTTTTG 59.466 34.615 0.00 0.00 36.00 2.44
674 682 6.534436 CAGACCATCACATTTGTTGTTTTTGA 59.466 34.615 0.00 0.00 36.00 2.69
675 683 7.064371 CAGACCATCACATTTGTTGTTTTTGAA 59.936 33.333 0.00 0.00 36.00 2.69
676 684 7.769970 AGACCATCACATTTGTTGTTTTTGAAT 59.230 29.630 0.00 0.00 36.00 2.57
677 685 7.695820 ACCATCACATTTGTTGTTTTTGAATG 58.304 30.769 0.00 0.00 36.00 2.67
678 686 7.551974 ACCATCACATTTGTTGTTTTTGAATGA 59.448 29.630 0.00 0.00 36.00 2.57
679 687 7.851963 CCATCACATTTGTTGTTTTTGAATGAC 59.148 33.333 0.00 0.00 36.00 3.06
680 688 8.605746 CATCACATTTGTTGTTTTTGAATGACT 58.394 29.630 0.00 0.00 36.00 3.41
681 689 8.545229 TCACATTTGTTGTTTTTGAATGACTT 57.455 26.923 0.00 0.00 36.00 3.01
682 690 8.997323 TCACATTTGTTGTTTTTGAATGACTTT 58.003 25.926 0.00 0.00 36.00 2.66
683 691 9.609950 CACATTTGTTGTTTTTGAATGACTTTT 57.390 25.926 0.00 0.00 36.00 2.27
684 692 9.824534 ACATTTGTTGTTTTTGAATGACTTTTC 57.175 25.926 0.00 0.00 33.74 2.29
685 693 9.823098 CATTTGTTGTTTTTGAATGACTTTTCA 57.177 25.926 0.00 0.00 35.73 2.69
687 695 8.824159 TTGTTGTTTTTGAATGACTTTTCAGA 57.176 26.923 0.00 0.00 36.97 3.27
688 696 8.824159 TGTTGTTTTTGAATGACTTTTCAGAA 57.176 26.923 0.00 0.00 36.97 3.02
689 697 8.924691 TGTTGTTTTTGAATGACTTTTCAGAAG 58.075 29.630 0.00 0.00 36.97 2.85
690 698 8.925700 GTTGTTTTTGAATGACTTTTCAGAAGT 58.074 29.630 0.00 0.00 36.97 3.01
691 699 8.687824 TGTTTTTGAATGACTTTTCAGAAGTC 57.312 30.769 11.03 11.03 45.12 3.01
692 700 7.759433 TGTTTTTGAATGACTTTTCAGAAGTCC 59.241 33.333 14.33 2.71 44.47 3.85
693 701 6.391227 TTTGAATGACTTTTCAGAAGTCCC 57.609 37.500 14.33 6.38 44.47 4.46
694 702 5.310409 TGAATGACTTTTCAGAAGTCCCT 57.690 39.130 14.33 3.76 44.47 4.20
695 703 5.694995 TGAATGACTTTTCAGAAGTCCCTT 58.305 37.500 14.33 9.08 44.47 3.95
696 704 6.837312 TGAATGACTTTTCAGAAGTCCCTTA 58.163 36.000 14.33 0.00 44.47 2.69
697 705 7.461749 TGAATGACTTTTCAGAAGTCCCTTAT 58.538 34.615 14.33 1.42 44.47 1.73
698 706 7.944554 TGAATGACTTTTCAGAAGTCCCTTATT 59.055 33.333 14.33 8.49 44.47 1.40
699 707 8.712228 AATGACTTTTCAGAAGTCCCTTATTT 57.288 30.769 14.33 0.09 44.47 1.40
700 708 8.712228 ATGACTTTTCAGAAGTCCCTTATTTT 57.288 30.769 14.33 0.00 44.47 1.82
701 709 9.807921 ATGACTTTTCAGAAGTCCCTTATTTTA 57.192 29.630 14.33 0.00 44.47 1.52
702 710 9.807921 TGACTTTTCAGAAGTCCCTTATTTTAT 57.192 29.630 14.33 0.00 44.47 1.40
704 712 9.807921 ACTTTTCAGAAGTCCCTTATTTTATCA 57.192 29.630 0.00 0.00 0.00 2.15
707 715 9.973661 TTTCAGAAGTCCCTTATTTTATCATGA 57.026 29.630 0.00 0.00 0.00 3.07
708 716 8.964476 TCAGAAGTCCCTTATTTTATCATGAC 57.036 34.615 0.00 0.00 0.00 3.06
709 717 8.548025 TCAGAAGTCCCTTATTTTATCATGACA 58.452 33.333 0.00 0.00 0.00 3.58
710 718 9.347240 CAGAAGTCCCTTATTTTATCATGACAT 57.653 33.333 0.00 0.00 0.00 3.06
711 719 9.566432 AGAAGTCCCTTATTTTATCATGACATC 57.434 33.333 0.00 0.00 0.00 3.06
712 720 9.342308 GAAGTCCCTTATTTTATCATGACATCA 57.658 33.333 0.00 0.00 0.00 3.07
713 721 9.872684 AAGTCCCTTATTTTATCATGACATCAT 57.127 29.630 0.00 0.00 36.96 2.45
714 722 9.872684 AGTCCCTTATTTTATCATGACATCATT 57.127 29.630 0.00 0.00 33.61 2.57
728 736 9.671279 TCATGACATCATTTAGACATAGTTTGT 57.329 29.630 0.00 0.00 36.32 2.83
729 737 9.712359 CATGACATCATTTAGACATAGTTTGTG 57.288 33.333 0.00 0.00 34.61 3.33
730 738 9.671279 ATGACATCATTTAGACATAGTTTGTGA 57.329 29.630 0.00 0.00 33.60 3.58
731 739 9.500785 TGACATCATTTAGACATAGTTTGTGAA 57.499 29.630 0.00 0.00 39.18 3.18
763 771 9.804977 ATTTTAAGAATCCTTATCTCATCCTGG 57.195 33.333 0.00 0.00 35.04 4.45
764 772 7.937700 TTAAGAATCCTTATCTCATCCTGGT 57.062 36.000 0.00 0.00 35.04 4.00
765 773 9.447279 TTTAAGAATCCTTATCTCATCCTGGTA 57.553 33.333 0.00 0.00 35.04 3.25
766 774 9.621239 TTAAGAATCCTTATCTCATCCTGGTAT 57.379 33.333 0.00 0.00 35.04 2.73
767 775 8.517323 AAGAATCCTTATCTCATCCTGGTATT 57.483 34.615 0.00 0.00 0.00 1.89
768 776 8.517323 AGAATCCTTATCTCATCCTGGTATTT 57.483 34.615 0.00 0.00 0.00 1.40
769 777 8.381636 AGAATCCTTATCTCATCCTGGTATTTG 58.618 37.037 0.00 0.00 0.00 2.32
770 778 7.878621 ATCCTTATCTCATCCTGGTATTTGA 57.121 36.000 0.00 0.00 0.00 2.69
771 779 7.878621 TCCTTATCTCATCCTGGTATTTGAT 57.121 36.000 0.00 0.00 0.00 2.57
772 780 8.280258 TCCTTATCTCATCCTGGTATTTGATT 57.720 34.615 0.00 0.00 0.00 2.57
773 781 8.378565 TCCTTATCTCATCCTGGTATTTGATTC 58.621 37.037 0.00 0.00 0.00 2.52
774 782 8.159447 CCTTATCTCATCCTGGTATTTGATTCA 58.841 37.037 0.00 0.00 0.00 2.57
775 783 9.217278 CTTATCTCATCCTGGTATTTGATTCAG 57.783 37.037 0.00 0.00 0.00 3.02
776 784 6.813293 TCTCATCCTGGTATTTGATTCAGA 57.187 37.500 0.00 0.00 0.00 3.27
777 785 7.384524 TCTCATCCTGGTATTTGATTCAGAT 57.615 36.000 0.00 0.00 0.00 2.90
778 786 7.809238 TCTCATCCTGGTATTTGATTCAGATT 58.191 34.615 0.00 0.00 0.00 2.40
779 787 8.277197 TCTCATCCTGGTATTTGATTCAGATTT 58.723 33.333 0.00 0.00 0.00 2.17
780 788 8.827832 TCATCCTGGTATTTGATTCAGATTTT 57.172 30.769 0.00 0.00 0.00 1.82
781 789 9.258629 TCATCCTGGTATTTGATTCAGATTTTT 57.741 29.630 0.00 0.00 0.00 1.94
813 821 8.752005 ATACCACAACTGCATAATCTTACATT 57.248 30.769 0.00 0.00 0.00 2.71
814 822 6.855836 ACCACAACTGCATAATCTTACATTG 58.144 36.000 0.00 0.00 0.00 2.82
815 823 6.434028 ACCACAACTGCATAATCTTACATTGT 59.566 34.615 0.00 0.00 0.00 2.71
816 824 7.609918 ACCACAACTGCATAATCTTACATTGTA 59.390 33.333 0.00 0.00 0.00 2.41
817 825 8.458052 CCACAACTGCATAATCTTACATTGTAA 58.542 33.333 8.86 8.86 0.00 2.41
818 826 9.277565 CACAACTGCATAATCTTACATTGTAAC 57.722 33.333 5.14 0.00 0.00 2.50
819 827 8.175069 ACAACTGCATAATCTTACATTGTAACG 58.825 33.333 5.14 3.14 0.00 3.18
820 828 6.715464 ACTGCATAATCTTACATTGTAACGC 58.285 36.000 5.14 3.25 0.00 4.84
821 829 6.315144 ACTGCATAATCTTACATTGTAACGCA 59.685 34.615 5.14 6.90 0.00 5.24
822 830 6.482835 TGCATAATCTTACATTGTAACGCAC 58.517 36.000 5.14 0.00 0.00 5.34
823 831 5.615581 GCATAATCTTACATTGTAACGCACG 59.384 40.000 5.14 0.00 0.00 5.34
824 832 6.508880 GCATAATCTTACATTGTAACGCACGA 60.509 38.462 5.14 2.13 0.00 4.35
825 833 5.450376 AATCTTACATTGTAACGCACGAG 57.550 39.130 5.14 0.00 0.00 4.18
826 834 2.664568 TCTTACATTGTAACGCACGAGC 59.335 45.455 5.14 0.00 37.42 5.03
827 835 2.067414 TACATTGTAACGCACGAGCA 57.933 45.000 5.50 0.00 42.27 4.26
828 836 1.438651 ACATTGTAACGCACGAGCAT 58.561 45.000 5.50 0.00 42.27 3.79
829 837 2.612604 ACATTGTAACGCACGAGCATA 58.387 42.857 5.50 0.00 42.27 3.14
830 838 3.194861 ACATTGTAACGCACGAGCATAT 58.805 40.909 5.50 0.00 42.27 1.78
831 839 3.621268 ACATTGTAACGCACGAGCATATT 59.379 39.130 5.50 0.00 42.27 1.28
832 840 4.094294 ACATTGTAACGCACGAGCATATTT 59.906 37.500 5.50 0.00 42.27 1.40
833 841 3.649870 TGTAACGCACGAGCATATTTG 57.350 42.857 5.50 0.00 42.27 2.32
865 873 6.919721 TGGATAAAAAGCACATGGAAACTAC 58.080 36.000 0.00 0.00 0.00 2.73
1117 1128 3.587933 GATCCCGTCTCGCTCGCT 61.588 66.667 0.00 0.00 0.00 4.93
1139 1150 1.444836 CAAATTCCGCGGGACTAACA 58.555 50.000 27.83 0.00 0.00 2.41
1360 1377 0.603707 CTGCACACCACCTGTTCGAT 60.604 55.000 0.00 0.00 0.00 3.59
1592 1610 5.882557 GGACACATTCCACAATCTCATAGTT 59.117 40.000 0.00 0.00 45.10 2.24
1604 1622 4.299586 TCTCATAGTTGGCACCATGAAA 57.700 40.909 0.00 0.00 0.00 2.69
1713 1731 1.510492 TGCCTTCATCTCCTATGCCA 58.490 50.000 0.00 0.00 0.00 4.92
1739 1759 4.453136 TCCCTTTTTATTTTGTCGGACGAG 59.547 41.667 3.34 0.00 0.00 4.18
1823 1843 2.480224 AATGCAAGAATTCGGATGCG 57.520 45.000 20.99 0.00 41.61 4.73
2019 2039 2.358737 GCAGCAACTGGGCGTACT 60.359 61.111 0.00 0.00 39.27 2.73
2052 2072 1.134946 GGGGTCCTTCGCATCAATTTG 59.865 52.381 0.00 0.00 0.00 2.32
2093 2113 5.474532 AGAAGCATGCAACATTTAAGACTGA 59.525 36.000 21.98 0.00 0.00 3.41
2108 2128 9.722056 ATTTAAGACTGAAATACGAAATCATGC 57.278 29.630 0.00 0.00 0.00 4.06
2153 2173 8.544622 TGGTTGACTATCTTTACCATGATGTTA 58.455 33.333 0.00 0.00 34.13 2.41
2334 2354 4.633175 ACATGTAACGTGTTGGTACATCA 58.367 39.130 0.00 0.00 39.30 3.07
2504 2525 4.301072 AGGTAGCTAAGCATGTTTTCCA 57.699 40.909 0.00 0.00 0.00 3.53
2507 2528 3.559238 AGCTAAGCATGTTTTCCAACG 57.441 42.857 0.00 0.00 35.40 4.10
2512 2533 4.483476 AAGCATGTTTTCCAACGTACTC 57.517 40.909 0.00 0.00 35.40 2.59
2520 2541 0.540365 TCCAACGTACTCCCTCCGTT 60.540 55.000 0.00 0.00 44.81 4.44
2522 2543 0.108945 CAACGTACTCCCTCCGTTCC 60.109 60.000 0.00 0.00 42.34 3.62
2523 2544 0.540365 AACGTACTCCCTCCGTTCCA 60.540 55.000 0.00 0.00 40.46 3.53
2526 2547 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
2530 2551 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2535 2556 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2537 2558 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2538 2559 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2539 2560 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2540 2561 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2541 2562 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2542 2563 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2543 2564 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2544 2565 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2545 2566 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2546 2567 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2548 2569 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2549 2570 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2550 2571 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
2551 2572 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
2552 2573 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
2554 2575 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
2555 2576 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
2556 2577 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
2557 2578 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
2584 2605 9.746711 CAAAGTTGAGTCATCTATTTTAGAACG 57.253 33.333 4.14 0.00 38.50 3.95
2585 2606 8.480643 AAGTTGAGTCATCTATTTTAGAACGG 57.519 34.615 4.14 0.00 38.50 4.44
2586 2607 7.837863 AGTTGAGTCATCTATTTTAGAACGGA 58.162 34.615 1.70 0.00 38.50 4.69
2587 2608 7.976734 AGTTGAGTCATCTATTTTAGAACGGAG 59.023 37.037 1.70 0.00 38.50 4.63
2588 2609 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
2589 2610 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
2590 2611 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
2591 2612 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
2592 2613 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
2593 2614 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
2594 2615 6.705863 TCTATTTTAGAACGGAGGGAGTAC 57.294 41.667 0.00 0.00 0.00 2.73
2595 2616 6.430007 TCTATTTTAGAACGGAGGGAGTACT 58.570 40.000 0.00 0.00 0.00 2.73
2596 2617 6.894103 TCTATTTTAGAACGGAGGGAGTACTT 59.106 38.462 0.00 0.00 0.00 2.24
2597 2618 5.397142 TTTTAGAACGGAGGGAGTACTTC 57.603 43.478 0.00 0.00 0.00 3.01
2598 2619 1.849977 AGAACGGAGGGAGTACTTCC 58.150 55.000 12.91 12.91 46.00 3.46
2599 2620 1.358445 AGAACGGAGGGAGTACTTCCT 59.642 52.381 23.71 23.71 45.98 3.36
2600 2621 2.579860 AGAACGGAGGGAGTACTTCCTA 59.420 50.000 23.53 0.00 45.98 2.94
2601 2622 3.011032 AGAACGGAGGGAGTACTTCCTAA 59.989 47.826 23.53 0.00 45.98 2.69
2602 2623 3.015675 ACGGAGGGAGTACTTCCTAAG 57.984 52.381 23.53 20.42 45.98 2.18
2603 2624 1.682323 CGGAGGGAGTACTTCCTAAGC 59.318 57.143 23.53 10.68 45.98 3.09
2604 2625 1.682323 GGAGGGAGTACTTCCTAAGCG 59.318 57.143 23.53 0.00 45.98 4.68
2605 2626 2.377073 GAGGGAGTACTTCCTAAGCGT 58.623 52.381 23.53 0.00 45.98 5.07
2606 2627 2.099427 GAGGGAGTACTTCCTAAGCGTG 59.901 54.545 23.53 0.00 45.98 5.34
2607 2628 1.823610 GGGAGTACTTCCTAAGCGTGT 59.176 52.381 13.55 0.00 45.98 4.49
2608 2629 2.233186 GGGAGTACTTCCTAAGCGTGTT 59.767 50.000 13.55 0.00 45.98 3.32
2609 2630 3.251571 GGAGTACTTCCTAAGCGTGTTG 58.748 50.000 0.00 0.00 43.16 3.33
2610 2631 3.057033 GGAGTACTTCCTAAGCGTGTTGA 60.057 47.826 0.00 0.00 43.16 3.18
2611 2632 4.381718 GGAGTACTTCCTAAGCGTGTTGAT 60.382 45.833 0.00 0.00 43.16 2.57
2612 2633 5.163581 GGAGTACTTCCTAAGCGTGTTGATA 60.164 44.000 0.00 0.00 43.16 2.15
2613 2634 5.648572 AGTACTTCCTAAGCGTGTTGATAC 58.351 41.667 0.00 0.00 0.00 2.24
2625 2646 3.678072 CGTGTTGATACATCCGTTTGAGT 59.322 43.478 0.00 0.00 36.50 3.41
2636 2657 6.460781 ACATCCGTTTGAGTGTCAACTAATA 58.539 36.000 0.00 0.00 35.89 0.98
2642 2663 5.670792 TTGAGTGTCAACTAATACCGGAT 57.329 39.130 9.46 0.00 36.52 4.18
2644 2665 3.793559 AGTGTCAACTAATACCGGATGC 58.206 45.455 9.46 0.00 33.79 3.91
2663 2684 6.352222 CGGATGCAGGGAGTATAATTTATCCT 60.352 42.308 0.00 0.00 32.18 3.24
2674 2695 9.109393 GAGTATAATTTATCCTGAACAGCAACA 57.891 33.333 0.00 0.00 0.00 3.33
2891 2912 3.866883 AGAAAGTTTGTTGTGGTGGTG 57.133 42.857 0.00 0.00 0.00 4.17
2971 2992 0.318107 CAGCAGTCAAAAGGTTGGCG 60.318 55.000 0.00 0.00 44.44 5.69
3227 3248 6.252869 CAGCAGCATTGATACTTGACAAATTC 59.747 38.462 0.00 0.00 0.00 2.17
3234 3255 9.414295 CATTGATACTTGACAAATTCACATGTT 57.586 29.630 0.00 0.00 32.26 2.71
3273 3294 6.475727 TCTTACATTTCGTAGTTAGCTCATGC 59.524 38.462 0.00 0.00 40.05 4.06
3534 3555 3.794028 GTCGAGAACTCATCAAGGAATCG 59.206 47.826 2.78 0.00 0.00 3.34
3545 3566 5.939883 TCATCAAGGAATCGTCATCTTTGTT 59.060 36.000 8.58 1.12 35.89 2.83
3590 3611 3.027412 TGTCCAAAACTTTAAGCCTGCA 58.973 40.909 0.00 0.00 0.00 4.41
3672 3693 4.907188 TTGCAAATCAATGAAATCGCAC 57.093 36.364 0.00 0.00 0.00 5.34
3854 3875 5.358298 AACTGAAAAGGTGTTATCTTCGC 57.642 39.130 0.00 0.00 0.00 4.70
4006 4027 8.776376 AAAGCAACATAGGTTTAATTCCATTG 57.224 30.769 0.00 0.00 37.43 2.82
4146 4168 9.762381 TTTCCAATTAACCACTACAGGATTTAT 57.238 29.630 0.00 0.00 0.00 1.40
4696 4723 9.826574 TCTAGTTTTGTGTTACAGTTTGACTAT 57.173 29.630 0.00 0.00 0.00 2.12
4861 4888 5.188327 TCAGTACTGAAGTCACAGAAGTG 57.812 43.478 23.24 0.00 40.87 3.16
4878 4905 4.699257 AGAAGTGCTAATGCTTCCTGAAAG 59.301 41.667 0.00 0.00 41.29 2.62
4881 4908 5.072741 AGTGCTAATGCTTCCTGAAAGAAA 58.927 37.500 0.00 0.00 37.12 2.52
4995 5022 3.766545 ACCCGCAATATAATTCCAGCAT 58.233 40.909 0.00 0.00 0.00 3.79
5068 5095 2.825223 AGGGTCAGTCATGTCATCTGA 58.175 47.619 1.07 1.07 36.12 3.27
5095 5122 0.787084 TCCTCACCTTGGAGTCCTCT 59.213 55.000 11.33 0.00 32.91 3.69
5102 5129 2.104963 ACCTTGGAGTCCTCTGTGTTTC 59.895 50.000 11.33 0.00 0.00 2.78
5255 5282 2.095853 AGTGTGCTTGACTGAACAAACG 59.904 45.455 0.00 0.00 0.00 3.60
5271 5298 7.708051 TGAACAAACGAGAATAAAATTGACCA 58.292 30.769 0.00 0.00 0.00 4.02
5315 5342 3.132289 TCATGGTCTCTTGTATTCCCGAC 59.868 47.826 0.00 0.00 0.00 4.79
5322 5349 0.174845 TTGTATTCCCGACGCAGGAG 59.825 55.000 0.00 0.00 34.08 3.69
5386 5413 2.672478 CGTGTTTTGGACAACCTGCAAA 60.672 45.455 0.00 0.00 40.65 3.68
5392 5419 1.212751 GACAACCTGCAAATCCGGC 59.787 57.895 0.00 0.00 0.00 6.13
5394 5421 0.827507 ACAACCTGCAAATCCGGCTT 60.828 50.000 0.00 0.00 0.00 4.35
5397 5424 2.713967 CCTGCAAATCCGGCTTGGG 61.714 63.158 15.39 7.36 38.76 4.12
5576 5605 9.270640 CAAGGAGAAACCATCAAGAATATCTAG 57.729 37.037 0.00 0.00 42.04 2.43
5625 5654 2.368875 CAGGGACCAGTGTATACATCCC 59.631 54.545 25.62 25.62 42.08 3.85
5655 5684 5.240623 AGAAATGTATTGTTTTGTCGCCTCA 59.759 36.000 0.00 0.00 0.00 3.86
5669 5698 2.965831 TCGCCTCATATGCCTAAGTCTT 59.034 45.455 0.00 0.00 0.00 3.01
5674 5703 5.277538 GCCTCATATGCCTAAGTCTTTTTCG 60.278 44.000 0.00 0.00 0.00 3.46
5713 5742 9.643693 AATTTTGTTGTTATTTATCTGAGCAGG 57.356 29.630 0.00 0.00 0.00 4.85
5715 5744 5.500234 TGTTGTTATTTATCTGAGCAGGCT 58.500 37.500 0.00 0.00 0.00 4.58
5777 5806 6.668323 CCGTTCAAATGTGATTGTTTAGTCT 58.332 36.000 0.00 0.00 32.48 3.24
5827 5911 5.851177 GTGTTTGTATGTGGAAGATGTTTCG 59.149 40.000 0.00 0.00 0.00 3.46
5855 5939 3.108847 TCAAACAAGGGGGTTTTGTCT 57.891 42.857 0.00 0.00 38.86 3.41
5871 5961 2.186384 CTGGCTCCCGCTCTTCTG 59.814 66.667 0.00 0.00 36.09 3.02
5876 5966 2.283894 TCCCGCTCTTCTGCCTCA 60.284 61.111 0.00 0.00 0.00 3.86
5890 5980 0.319728 GCCTCAGCTTCTCTGACACA 59.680 55.000 0.00 0.00 46.34 3.72
5993 6084 9.654663 GGTAGTACAACTCAAGAATAAGAACAT 57.345 33.333 2.06 0.00 0.00 2.71
6074 6165 1.401761 AACACACATCAGGCTTGCAA 58.598 45.000 0.00 0.00 0.00 4.08
6075 6166 1.624336 ACACACATCAGGCTTGCAAT 58.376 45.000 0.00 0.00 0.00 3.56
6076 6167 1.271379 ACACACATCAGGCTTGCAATG 59.729 47.619 0.00 0.00 0.00 2.82
6077 6168 1.271379 CACACATCAGGCTTGCAATGT 59.729 47.619 0.00 0.00 32.73 2.71
6078 6169 1.965643 ACACATCAGGCTTGCAATGTT 59.034 42.857 0.00 0.00 30.16 2.71
6079 6170 3.057386 CACACATCAGGCTTGCAATGTTA 60.057 43.478 0.00 0.00 30.16 2.41
6080 6171 3.573538 ACACATCAGGCTTGCAATGTTAA 59.426 39.130 0.00 0.00 30.16 2.01
6081 6172 4.171005 CACATCAGGCTTGCAATGTTAAG 58.829 43.478 0.00 0.00 30.16 1.85
6082 6173 4.081406 ACATCAGGCTTGCAATGTTAAGA 58.919 39.130 0.00 0.00 0.00 2.10
6083 6174 4.157289 ACATCAGGCTTGCAATGTTAAGAG 59.843 41.667 0.00 0.00 0.00 2.85
6084 6175 3.084039 TCAGGCTTGCAATGTTAAGAGG 58.916 45.455 0.00 0.00 0.00 3.69
6085 6176 1.821136 AGGCTTGCAATGTTAAGAGGC 59.179 47.619 0.00 0.00 0.00 4.70
6086 6177 1.821136 GGCTTGCAATGTTAAGAGGCT 59.179 47.619 0.00 0.00 0.00 4.58
6087 6178 2.159324 GGCTTGCAATGTTAAGAGGCTC 60.159 50.000 6.34 6.34 0.00 4.70
6088 6179 2.476854 GCTTGCAATGTTAAGAGGCTCG 60.477 50.000 9.22 0.00 0.00 5.03
6089 6180 1.086696 TGCAATGTTAAGAGGCTCGC 58.913 50.000 9.22 4.33 0.00 5.03
6090 6181 1.086696 GCAATGTTAAGAGGCTCGCA 58.913 50.000 9.22 7.63 0.00 5.10
6166 6258 2.743664 TGAGAATCAACGTCCTTGCATG 59.256 45.455 0.00 0.00 45.97 4.06
6310 6425 4.040461 ACTCCATCCGTCCCACAATATAAG 59.960 45.833 0.00 0.00 0.00 1.73
6314 6429 2.132762 CCGTCCCACAATATAAGACGC 58.867 52.381 5.39 0.00 46.66 5.19
6321 6436 4.351192 CCACAATATAAGACGCTTTTGCC 58.649 43.478 0.00 0.00 43.93 4.52
6406 7121 1.137086 GGCAAAGGAGATGCGACTAGA 59.863 52.381 0.00 0.00 44.75 2.43
6445 7161 0.388006 TCGGTGCACGTCATGTACAG 60.388 55.000 11.45 0.00 45.16 2.74
6446 7162 1.787847 GGTGCACGTCATGTACAGC 59.212 57.895 11.45 0.00 45.16 4.40
6448 7164 0.439985 GTGCACGTCATGTACAGCAG 59.560 55.000 0.00 0.00 43.03 4.24
6449 7165 0.033366 TGCACGTCATGTACAGCAGT 59.967 50.000 0.33 0.00 34.81 4.40
6450 7166 1.148310 GCACGTCATGTACAGCAGTT 58.852 50.000 0.33 0.00 0.00 3.16
6451 7167 1.136252 GCACGTCATGTACAGCAGTTG 60.136 52.381 0.33 0.00 0.00 3.16
6452 7168 2.403259 CACGTCATGTACAGCAGTTGA 58.597 47.619 0.33 0.00 0.00 3.18
6455 7171 3.056536 ACGTCATGTACAGCAGTTGAGAT 60.057 43.478 0.33 0.00 0.00 2.75
6459 7176 6.454318 CGTCATGTACAGCAGTTGAGATAAAC 60.454 42.308 0.33 0.00 0.00 2.01
6461 7178 4.242475 TGTACAGCAGTTGAGATAAACCG 58.758 43.478 0.00 0.00 0.00 4.44
6472 7189 7.931948 CAGTTGAGATAAACCGAAATATAGGGT 59.068 37.037 0.00 0.00 34.99 4.34
6487 7204 9.120538 GAAATATAGGGTAATCTCACAGCAAAA 57.879 33.333 0.00 0.00 0.00 2.44
6488 7205 9.646522 AAATATAGGGTAATCTCACAGCAAAAT 57.353 29.630 0.00 0.00 0.00 1.82
6528 7245 1.331756 GAACAGCACACCAGTTCACAG 59.668 52.381 0.00 0.00 40.89 3.66
6575 7292 1.848652 ACTGCCACGGTAGAGTACAT 58.151 50.000 8.28 0.00 0.00 2.29
6576 7293 2.176889 ACTGCCACGGTAGAGTACATT 58.823 47.619 8.28 0.00 0.00 2.71
6632 7351 4.838986 ACCTCTAGCTAGGAACAAGAACAA 59.161 41.667 20.58 0.00 39.15 2.83
6633 7352 5.172205 CCTCTAGCTAGGAACAAGAACAAC 58.828 45.833 20.58 0.00 39.15 3.32
6659 7378 0.391130 GCGTCTGTCCATAGTGGCAA 60.391 55.000 0.00 0.00 37.47 4.52
6733 7453 7.114106 GCTTCAAGTCTTCAATCAAAGCTAAAC 59.886 37.037 0.00 0.00 36.00 2.01
6737 7457 6.299141 AGTCTTCAATCAAAGCTAAACAGGA 58.701 36.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.200337 GCCCTTTCACCGGCAAGTT 61.200 57.895 0.00 0.00 45.01 2.66
17 18 2.597510 GCCCTTTCACCGGCAAGT 60.598 61.111 0.00 0.00 45.01 3.16
53 57 4.139038 GGACACAAACCCTAACAAAGCTA 58.861 43.478 0.00 0.00 0.00 3.32
94 98 0.736325 ATTTTCAGGGAGTCGTCGCG 60.736 55.000 0.00 0.00 40.58 5.87
152 156 3.120269 GCCTACCGATGATACTAGACACG 60.120 52.174 0.00 0.00 0.00 4.49
161 165 0.671796 CCACACGCCTACCGATGATA 59.328 55.000 0.00 0.00 41.02 2.15
171 175 0.614979 AGATACACCTCCACACGCCT 60.615 55.000 0.00 0.00 0.00 5.52
187 191 1.633774 AAGACATATCCGCCGGAGAT 58.366 50.000 13.12 10.32 33.50 2.75
208 212 6.425210 TGAATAGATCCGATCAAATCCACT 57.575 37.500 11.01 0.00 0.00 4.00
218 222 6.582677 AGAAGAACGATGAATAGATCCGAT 57.417 37.500 0.00 0.00 0.00 4.18
227 233 4.090066 CACGAACGAAGAAGAACGATGAAT 59.910 41.667 0.14 0.00 0.00 2.57
231 237 2.724690 CACACGAACGAAGAAGAACGAT 59.275 45.455 0.14 0.00 0.00 3.73
238 244 3.113322 CTGAAGACACACGAACGAAGAA 58.887 45.455 0.14 0.00 0.00 2.52
267 273 7.116948 CGCCGATGAAGAATATAGATCAAAAGT 59.883 37.037 0.00 0.00 0.00 2.66
297 303 0.030101 CAACGCACCGGAACAACAAT 59.970 50.000 9.46 0.00 0.00 2.71
307 313 1.366111 CCCATAGAACCAACGCACCG 61.366 60.000 0.00 0.00 0.00 4.94
336 342 4.580868 ACTAGACAGTCGAGAAGTCATCA 58.419 43.478 16.88 0.08 34.80 3.07
346 352 4.139786 ACCTTGTTGTACTAGACAGTCGA 58.860 43.478 0.00 0.00 39.88 4.20
357 363 0.312729 CCGGGCAAACCTTGTTGTAC 59.687 55.000 0.00 0.00 36.97 2.90
549 557 3.999001 ACTAGACTGATGAACGACGTGTA 59.001 43.478 0.00 0.00 0.00 2.90
550 558 2.812591 ACTAGACTGATGAACGACGTGT 59.187 45.455 0.00 0.00 0.00 4.49
551 559 3.473093 ACTAGACTGATGAACGACGTG 57.527 47.619 0.00 0.00 0.00 4.49
552 560 3.501062 TGAACTAGACTGATGAACGACGT 59.499 43.478 0.00 0.00 0.00 4.34
553 561 4.079665 TGAACTAGACTGATGAACGACG 57.920 45.455 0.00 0.00 0.00 5.12
554 562 4.416620 CCTGAACTAGACTGATGAACGAC 58.583 47.826 0.00 0.00 0.00 4.34
555 563 3.119459 GCCTGAACTAGACTGATGAACGA 60.119 47.826 0.00 0.00 0.00 3.85
556 564 3.182967 GCCTGAACTAGACTGATGAACG 58.817 50.000 0.00 0.00 0.00 3.95
557 565 4.180057 CTGCCTGAACTAGACTGATGAAC 58.820 47.826 0.00 0.00 0.00 3.18
558 566 3.196469 CCTGCCTGAACTAGACTGATGAA 59.804 47.826 0.00 0.00 0.00 2.57
559 567 2.762887 CCTGCCTGAACTAGACTGATGA 59.237 50.000 0.00 0.00 0.00 2.92
560 568 2.158986 CCCTGCCTGAACTAGACTGATG 60.159 54.545 0.00 0.00 0.00 3.07
561 569 2.114616 CCCTGCCTGAACTAGACTGAT 58.885 52.381 0.00 0.00 0.00 2.90
562 570 1.203187 ACCCTGCCTGAACTAGACTGA 60.203 52.381 0.00 0.00 0.00 3.41
563 571 1.205893 GACCCTGCCTGAACTAGACTG 59.794 57.143 0.00 0.00 0.00 3.51
564 572 1.077993 AGACCCTGCCTGAACTAGACT 59.922 52.381 0.00 0.00 0.00 3.24
565 573 1.562783 AGACCCTGCCTGAACTAGAC 58.437 55.000 0.00 0.00 0.00 2.59
566 574 3.052869 TGATAGACCCTGCCTGAACTAGA 60.053 47.826 0.00 0.00 0.00 2.43
567 575 3.300388 TGATAGACCCTGCCTGAACTAG 58.700 50.000 0.00 0.00 0.00 2.57
568 576 3.398318 TGATAGACCCTGCCTGAACTA 57.602 47.619 0.00 0.00 0.00 2.24
569 577 2.254152 TGATAGACCCTGCCTGAACT 57.746 50.000 0.00 0.00 0.00 3.01
570 578 3.209410 CATTGATAGACCCTGCCTGAAC 58.791 50.000 0.00 0.00 0.00 3.18
571 579 2.421952 GCATTGATAGACCCTGCCTGAA 60.422 50.000 0.00 0.00 0.00 3.02
572 580 1.141657 GCATTGATAGACCCTGCCTGA 59.858 52.381 0.00 0.00 0.00 3.86
573 581 1.134007 TGCATTGATAGACCCTGCCTG 60.134 52.381 0.00 0.00 31.89 4.85
574 582 1.142465 CTGCATTGATAGACCCTGCCT 59.858 52.381 0.00 0.00 31.89 4.75
575 583 1.133976 ACTGCATTGATAGACCCTGCC 60.134 52.381 0.00 0.00 31.89 4.85
576 584 2.338577 ACTGCATTGATAGACCCTGC 57.661 50.000 0.00 0.00 0.00 4.85
577 585 3.181493 GCAAACTGCATTGATAGACCCTG 60.181 47.826 4.21 0.00 44.26 4.45
578 586 3.019564 GCAAACTGCATTGATAGACCCT 58.980 45.455 4.21 0.00 44.26 4.34
579 587 3.427161 GCAAACTGCATTGATAGACCC 57.573 47.619 4.21 0.00 44.26 4.46
591 599 1.938625 TTTTTGGCTGAGCAAACTGC 58.061 45.000 6.82 0.00 45.46 4.40
607 615 5.351948 AGGCACCACAACAAAGTATTTTT 57.648 34.783 0.00 0.00 35.03 1.94
608 616 5.351948 AAGGCACCACAACAAAGTATTTT 57.648 34.783 0.00 0.00 35.03 1.82
609 617 6.322712 TCTTAAGGCACCACAACAAAGTATTT 59.677 34.615 1.85 0.00 40.26 1.40
610 618 5.830991 TCTTAAGGCACCACAACAAAGTATT 59.169 36.000 1.85 0.00 0.00 1.89
611 619 5.381757 TCTTAAGGCACCACAACAAAGTAT 58.618 37.500 1.85 0.00 0.00 2.12
612 620 4.783055 TCTTAAGGCACCACAACAAAGTA 58.217 39.130 1.85 0.00 0.00 2.24
613 621 3.626930 TCTTAAGGCACCACAACAAAGT 58.373 40.909 1.85 0.00 0.00 2.66
614 622 4.647424 TTCTTAAGGCACCACAACAAAG 57.353 40.909 1.85 0.00 0.00 2.77
615 623 5.127845 TGATTTCTTAAGGCACCACAACAAA 59.872 36.000 1.85 0.00 0.00 2.83
616 624 4.646945 TGATTTCTTAAGGCACCACAACAA 59.353 37.500 1.85 0.00 0.00 2.83
617 625 4.211125 TGATTTCTTAAGGCACCACAACA 58.789 39.130 1.85 0.00 0.00 3.33
618 626 4.846779 TGATTTCTTAAGGCACCACAAC 57.153 40.909 1.85 0.00 0.00 3.32
619 627 5.860941 TTTGATTTCTTAAGGCACCACAA 57.139 34.783 1.85 0.54 0.00 3.33
620 628 5.335583 CGATTTGATTTCTTAAGGCACCACA 60.336 40.000 1.85 0.00 0.00 4.17
621 629 5.095490 CGATTTGATTTCTTAAGGCACCAC 58.905 41.667 1.85 0.00 0.00 4.16
622 630 4.764823 ACGATTTGATTTCTTAAGGCACCA 59.235 37.500 1.85 0.00 0.00 4.17
623 631 5.095490 CACGATTTGATTTCTTAAGGCACC 58.905 41.667 1.85 0.00 0.00 5.01
624 632 5.938322 TCACGATTTGATTTCTTAAGGCAC 58.062 37.500 1.85 0.00 0.00 5.01
625 633 6.374053 TGATCACGATTTGATTTCTTAAGGCA 59.626 34.615 1.85 0.00 45.67 4.75
626 634 6.785191 TGATCACGATTTGATTTCTTAAGGC 58.215 36.000 1.85 0.00 45.67 4.35
627 635 8.119226 GTCTGATCACGATTTGATTTCTTAAGG 58.881 37.037 1.85 0.00 45.67 2.69
628 636 8.119226 GGTCTGATCACGATTTGATTTCTTAAG 58.881 37.037 0.00 0.00 45.67 1.85
629 637 7.606073 TGGTCTGATCACGATTTGATTTCTTAA 59.394 33.333 0.00 0.00 45.67 1.85
630 638 7.102993 TGGTCTGATCACGATTTGATTTCTTA 58.897 34.615 0.00 0.00 45.67 2.10
631 639 5.939883 TGGTCTGATCACGATTTGATTTCTT 59.060 36.000 0.00 0.00 45.67 2.52
632 640 5.491070 TGGTCTGATCACGATTTGATTTCT 58.509 37.500 0.00 0.00 45.67 2.52
633 641 5.801350 TGGTCTGATCACGATTTGATTTC 57.199 39.130 0.00 0.00 45.67 2.17
634 642 5.882000 TGATGGTCTGATCACGATTTGATTT 59.118 36.000 0.00 0.00 45.67 2.17
635 643 5.295292 GTGATGGTCTGATCACGATTTGATT 59.705 40.000 0.00 0.00 45.67 2.57
637 645 4.183865 GTGATGGTCTGATCACGATTTGA 58.816 43.478 0.00 0.00 42.09 2.69
638 646 4.526970 GTGATGGTCTGATCACGATTTG 57.473 45.455 0.00 0.00 42.09 2.32
645 653 5.072055 ACAACAAATGTGATGGTCTGATCA 58.928 37.500 0.00 0.00 41.93 2.92
646 654 5.633830 ACAACAAATGTGATGGTCTGATC 57.366 39.130 0.00 0.00 41.93 2.92
647 655 6.409524 AAACAACAAATGTGATGGTCTGAT 57.590 33.333 0.00 0.00 42.99 2.90
648 656 5.850557 AAACAACAAATGTGATGGTCTGA 57.149 34.783 0.00 0.00 42.99 3.27
649 657 6.534436 TCAAAAACAACAAATGTGATGGTCTG 59.466 34.615 0.00 0.00 42.99 3.51
650 658 6.638610 TCAAAAACAACAAATGTGATGGTCT 58.361 32.000 0.00 0.00 42.99 3.85
651 659 6.900568 TCAAAAACAACAAATGTGATGGTC 57.099 33.333 0.00 0.00 42.99 4.02
652 660 7.551974 TCATTCAAAAACAACAAATGTGATGGT 59.448 29.630 0.00 0.00 42.99 3.55
653 661 7.851963 GTCATTCAAAAACAACAAATGTGATGG 59.148 33.333 0.00 0.00 42.99 3.51
654 662 8.605746 AGTCATTCAAAAACAACAAATGTGATG 58.394 29.630 0.00 0.00 42.99 3.07
655 663 8.721019 AGTCATTCAAAAACAACAAATGTGAT 57.279 26.923 0.00 0.00 42.99 3.06
656 664 8.545229 AAGTCATTCAAAAACAACAAATGTGA 57.455 26.923 0.00 0.00 42.99 3.58
657 665 9.609950 AAAAGTCATTCAAAAACAACAAATGTG 57.390 25.926 0.00 0.00 42.99 3.21
658 666 9.824534 GAAAAGTCATTCAAAAACAACAAATGT 57.175 25.926 0.00 0.00 46.82 2.71
659 667 9.823098 TGAAAAGTCATTCAAAAACAACAAATG 57.177 25.926 0.00 0.00 36.42 2.32
661 669 9.265901 TCTGAAAAGTCATTCAAAAACAACAAA 57.734 25.926 0.00 0.00 38.75 2.83
662 670 8.824159 TCTGAAAAGTCATTCAAAAACAACAA 57.176 26.923 0.00 0.00 38.75 2.83
663 671 8.824159 TTCTGAAAAGTCATTCAAAAACAACA 57.176 26.923 0.00 0.00 38.75 3.33
664 672 8.925700 ACTTCTGAAAAGTCATTCAAAAACAAC 58.074 29.630 0.00 0.00 38.75 3.32
665 673 9.139174 GACTTCTGAAAAGTCATTCAAAAACAA 57.861 29.630 11.92 0.00 44.48 2.83
666 674 7.759433 GGACTTCTGAAAAGTCATTCAAAAACA 59.241 33.333 17.07 0.00 46.31 2.83
667 675 7.222805 GGGACTTCTGAAAAGTCATTCAAAAAC 59.777 37.037 17.07 0.25 46.31 2.43
668 676 7.124147 AGGGACTTCTGAAAAGTCATTCAAAAA 59.876 33.333 17.07 0.00 46.31 1.94
669 677 6.607198 AGGGACTTCTGAAAAGTCATTCAAAA 59.393 34.615 17.07 0.00 46.31 2.44
670 678 6.129179 AGGGACTTCTGAAAAGTCATTCAAA 58.871 36.000 17.07 0.00 46.31 2.69
671 679 5.694995 AGGGACTTCTGAAAAGTCATTCAA 58.305 37.500 17.07 0.00 46.31 2.69
672 680 5.310409 AGGGACTTCTGAAAAGTCATTCA 57.690 39.130 17.07 0.00 46.31 2.57
687 695 9.872684 ATGATGTCATGATAAAATAAGGGACTT 57.127 29.630 0.00 0.00 43.39 3.01
688 696 9.872684 AATGATGTCATGATAAAATAAGGGACT 57.127 29.630 0.00 0.00 37.04 3.85
702 710 9.671279 ACAAACTATGTCTAAATGATGTCATGA 57.329 29.630 0.00 0.00 37.96 3.07
703 711 9.712359 CACAAACTATGTCTAAATGATGTCATG 57.288 33.333 0.00 0.00 41.46 3.07
704 712 9.671279 TCACAAACTATGTCTAAATGATGTCAT 57.329 29.630 0.00 0.00 41.46 3.06
705 713 9.500785 TTCACAAACTATGTCTAAATGATGTCA 57.499 29.630 0.00 0.00 41.46 3.58
737 745 9.804977 CCAGGATGAGATAAGGATTCTTAAAAT 57.195 33.333 0.00 0.00 39.69 1.82
738 746 8.781951 ACCAGGATGAGATAAGGATTCTTAAAA 58.218 33.333 0.00 0.00 39.69 1.52
739 747 8.337118 ACCAGGATGAGATAAGGATTCTTAAA 57.663 34.615 0.00 0.00 39.69 1.52
740 748 7.937700 ACCAGGATGAGATAAGGATTCTTAA 57.062 36.000 0.00 0.00 39.69 1.85
741 749 9.621239 AATACCAGGATGAGATAAGGATTCTTA 57.379 33.333 0.00 0.00 39.69 2.10
742 750 8.517323 AATACCAGGATGAGATAAGGATTCTT 57.483 34.615 0.00 0.00 39.69 2.52
743 751 8.381636 CAAATACCAGGATGAGATAAGGATTCT 58.618 37.037 0.00 0.00 39.69 2.40
744 752 8.378565 TCAAATACCAGGATGAGATAAGGATTC 58.621 37.037 0.00 0.00 39.69 2.52
745 753 8.280258 TCAAATACCAGGATGAGATAAGGATT 57.720 34.615 0.00 0.00 39.69 3.01
746 754 7.878621 TCAAATACCAGGATGAGATAAGGAT 57.121 36.000 0.00 0.00 39.69 3.24
747 755 7.878621 ATCAAATACCAGGATGAGATAAGGA 57.121 36.000 0.00 0.00 39.69 3.36
748 756 8.159447 TGAATCAAATACCAGGATGAGATAAGG 58.841 37.037 0.00 0.00 39.69 2.69
749 757 9.217278 CTGAATCAAATACCAGGATGAGATAAG 57.783 37.037 0.00 0.00 39.69 1.73
750 758 8.937835 TCTGAATCAAATACCAGGATGAGATAA 58.062 33.333 0.00 0.00 39.69 1.75
751 759 8.496534 TCTGAATCAAATACCAGGATGAGATA 57.503 34.615 0.00 0.00 39.69 1.98
752 760 7.384524 TCTGAATCAAATACCAGGATGAGAT 57.615 36.000 0.00 0.00 39.69 2.75
753 761 6.813293 TCTGAATCAAATACCAGGATGAGA 57.187 37.500 0.00 0.00 39.69 3.27
754 762 8.461249 AAATCTGAATCAAATACCAGGATGAG 57.539 34.615 0.00 0.00 39.69 2.90
755 763 8.827832 AAAATCTGAATCAAATACCAGGATGA 57.172 30.769 0.00 0.00 39.69 2.92
787 795 9.845740 AATGTAAGATTATGCAGTTGTGGTATA 57.154 29.630 0.00 0.00 0.00 1.47
788 796 8.623903 CAATGTAAGATTATGCAGTTGTGGTAT 58.376 33.333 0.00 0.00 0.00 2.73
789 797 7.609918 ACAATGTAAGATTATGCAGTTGTGGTA 59.390 33.333 0.00 0.00 0.00 3.25
790 798 6.434028 ACAATGTAAGATTATGCAGTTGTGGT 59.566 34.615 0.00 0.00 0.00 4.16
791 799 6.855836 ACAATGTAAGATTATGCAGTTGTGG 58.144 36.000 0.00 0.00 0.00 4.17
792 800 9.277565 GTTACAATGTAAGATTATGCAGTTGTG 57.722 33.333 6.03 0.00 0.00 3.33
793 801 8.175069 CGTTACAATGTAAGATTATGCAGTTGT 58.825 33.333 6.03 0.00 0.00 3.32
794 802 7.164171 GCGTTACAATGTAAGATTATGCAGTTG 59.836 37.037 6.03 0.00 0.00 3.16
795 803 7.148323 TGCGTTACAATGTAAGATTATGCAGTT 60.148 33.333 6.03 0.00 0.00 3.16
796 804 6.315144 TGCGTTACAATGTAAGATTATGCAGT 59.685 34.615 6.03 0.00 0.00 4.40
797 805 6.628856 GTGCGTTACAATGTAAGATTATGCAG 59.371 38.462 6.03 0.00 0.00 4.41
798 806 6.482835 GTGCGTTACAATGTAAGATTATGCA 58.517 36.000 6.03 5.54 0.00 3.96
799 807 5.615581 CGTGCGTTACAATGTAAGATTATGC 59.384 40.000 6.03 2.92 0.00 3.14
800 808 6.928820 TCGTGCGTTACAATGTAAGATTATG 58.071 36.000 6.03 0.38 0.00 1.90
801 809 6.292168 GCTCGTGCGTTACAATGTAAGATTAT 60.292 38.462 6.03 0.00 0.00 1.28
802 810 5.005012 GCTCGTGCGTTACAATGTAAGATTA 59.995 40.000 6.03 0.00 0.00 1.75
803 811 4.201685 GCTCGTGCGTTACAATGTAAGATT 60.202 41.667 6.03 0.00 0.00 2.40
804 812 3.306166 GCTCGTGCGTTACAATGTAAGAT 59.694 43.478 6.03 0.00 0.00 2.40
805 813 2.664568 GCTCGTGCGTTACAATGTAAGA 59.335 45.455 6.03 0.00 0.00 2.10
806 814 2.410392 TGCTCGTGCGTTACAATGTAAG 59.590 45.455 6.03 2.65 43.34 2.34
807 815 2.405172 TGCTCGTGCGTTACAATGTAA 58.595 42.857 1.08 1.08 43.34 2.41
808 816 2.067414 TGCTCGTGCGTTACAATGTA 57.933 45.000 4.84 0.00 43.34 2.29
809 817 1.438651 ATGCTCGTGCGTTACAATGT 58.561 45.000 4.84 0.00 43.34 2.71
810 818 3.859745 ATATGCTCGTGCGTTACAATG 57.140 42.857 9.76 0.00 43.34 2.82
811 819 4.587306 CAAATATGCTCGTGCGTTACAAT 58.413 39.130 9.76 0.00 43.34 2.71
812 820 3.997276 CAAATATGCTCGTGCGTTACAA 58.003 40.909 9.76 0.00 43.34 2.41
813 821 3.649870 CAAATATGCTCGTGCGTTACA 57.350 42.857 9.76 0.00 43.34 2.41
826 834 9.884465 GCTTTTTATCCAGTACTAGCAAATATG 57.116 33.333 0.00 0.00 0.00 1.78
827 835 9.627123 TGCTTTTTATCCAGTACTAGCAAATAT 57.373 29.630 9.66 0.00 34.76 1.28
828 836 8.889717 GTGCTTTTTATCCAGTACTAGCAAATA 58.110 33.333 12.91 0.00 38.89 1.40
829 837 7.393234 TGTGCTTTTTATCCAGTACTAGCAAAT 59.607 33.333 12.91 0.00 38.89 2.32
830 838 6.712998 TGTGCTTTTTATCCAGTACTAGCAAA 59.287 34.615 12.91 6.54 38.89 3.68
831 839 6.234920 TGTGCTTTTTATCCAGTACTAGCAA 58.765 36.000 12.91 3.59 38.89 3.91
832 840 5.800296 TGTGCTTTTTATCCAGTACTAGCA 58.200 37.500 8.30 8.30 35.26 3.49
833 841 6.238484 CCATGTGCTTTTTATCCAGTACTAGC 60.238 42.308 0.00 0.00 0.00 3.42
834 842 7.047891 TCCATGTGCTTTTTATCCAGTACTAG 58.952 38.462 0.00 0.00 0.00 2.57
835 843 6.953101 TCCATGTGCTTTTTATCCAGTACTA 58.047 36.000 0.00 0.00 0.00 1.82
836 844 5.815581 TCCATGTGCTTTTTATCCAGTACT 58.184 37.500 0.00 0.00 0.00 2.73
837 845 6.509418 TTCCATGTGCTTTTTATCCAGTAC 57.491 37.500 0.00 0.00 0.00 2.73
838 846 6.719370 AGTTTCCATGTGCTTTTTATCCAGTA 59.281 34.615 0.00 0.00 0.00 2.74
839 847 5.539955 AGTTTCCATGTGCTTTTTATCCAGT 59.460 36.000 0.00 0.00 0.00 4.00
840 848 6.029346 AGTTTCCATGTGCTTTTTATCCAG 57.971 37.500 0.00 0.00 0.00 3.86
865 873 2.179517 GTCTGACGAGCCAGGTCG 59.820 66.667 16.93 16.93 45.76 4.79
1056 1067 1.201429 TTGGAGCAGGAGGGAGTTCC 61.201 60.000 0.00 0.00 35.89 3.62
1139 1150 2.321263 CTGCACCGCCAGATCCAGAT 62.321 60.000 0.00 0.00 34.77 2.90
1232 1249 1.878522 GCGCATGTACTCCTCCGTG 60.879 63.158 0.30 0.00 0.00 4.94
1317 1334 0.320073 CGAAACAAGGGCTGGACGTA 60.320 55.000 0.00 0.00 0.00 3.57
1360 1377 2.031012 CCACTGCTCGGAACTGCA 59.969 61.111 0.00 0.00 37.63 4.41
1592 1610 2.277591 GCTGCCTTTCATGGTGCCA 61.278 57.895 0.00 0.00 0.00 4.92
1604 1622 2.370445 ATCTTGTAGCCGGCTGCCT 61.370 57.895 38.98 18.51 42.71 4.75
1713 1731 6.016108 TCGTCCGACAAAATAAAAAGGGAATT 60.016 34.615 0.00 0.00 0.00 2.17
1739 1759 6.374613 ACAAAGAGTTAAGCCATTAGCCTAAC 59.625 38.462 0.00 0.00 45.18 2.34
1814 1834 1.375853 CCAAGATTGCCGCATCCGAA 61.376 55.000 0.00 0.00 36.29 4.30
1823 1843 4.142160 GGAAGATAACCAACCAAGATTGCC 60.142 45.833 0.00 0.00 0.00 4.52
2019 2039 2.915869 AGGACCCCTTACACTTGATCA 58.084 47.619 0.00 0.00 0.00 2.92
2052 2072 7.430502 GCATGCTTCTACAATCTGAAAACATAC 59.569 37.037 11.37 0.00 0.00 2.39
2093 2113 7.099266 TCTTGGAATGCATGATTTCGTATTT 57.901 32.000 0.00 0.00 0.00 1.40
2106 2126 5.125356 CCACAGTGTATATCTTGGAATGCA 58.875 41.667 0.00 0.00 0.00 3.96
2107 2127 5.126067 ACCACAGTGTATATCTTGGAATGC 58.874 41.667 0.00 0.00 0.00 3.56
2108 2128 6.823182 TCAACCACAGTGTATATCTTGGAATG 59.177 38.462 0.00 0.00 0.00 2.67
2153 2173 4.012374 CAAGTGCCCAGTTGATAAGTCAT 58.988 43.478 9.67 0.00 42.77 3.06
2334 2354 3.970640 CTCCAGAGGCTCTTATAACCCTT 59.029 47.826 15.90 0.00 0.00 3.95
2400 2420 8.704234 GGAATTGATGTCTTCTGATAACGTATC 58.296 37.037 0.00 0.00 35.74 2.24
2405 2426 7.856145 AGTGGAATTGATGTCTTCTGATAAC 57.144 36.000 0.00 0.00 0.00 1.89
2502 2523 3.690745 ACGGAGGGAGTACGTTGG 58.309 61.111 0.00 0.00 37.61 3.77
2507 2528 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2512 2533 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2520 2541 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2522 2543 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2523 2544 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2526 2547 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
2530 2551 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
2558 2579 9.746711 CGTTCTAAAATAGATGACTCAACTTTG 57.253 33.333 0.00 0.00 34.22 2.77
2559 2580 8.936864 CCGTTCTAAAATAGATGACTCAACTTT 58.063 33.333 0.00 0.00 34.22 2.66
2560 2581 8.311836 TCCGTTCTAAAATAGATGACTCAACTT 58.688 33.333 0.00 0.00 34.22 2.66
2561 2582 7.837863 TCCGTTCTAAAATAGATGACTCAACT 58.162 34.615 0.00 0.00 34.22 3.16
2562 2583 7.222999 CCTCCGTTCTAAAATAGATGACTCAAC 59.777 40.741 0.00 0.00 34.22 3.18
2563 2584 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
2564 2585 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
2565 2586 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
2566 2587 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
2567 2588 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
2568 2589 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
2569 2590 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
2570 2591 7.068061 AGTACTCCCTCCGTTCTAAAATAGAT 58.932 38.462 0.00 0.00 34.22 1.98
2571 2592 6.430007 AGTACTCCCTCCGTTCTAAAATAGA 58.570 40.000 0.00 0.00 0.00 1.98
2572 2593 6.712179 AGTACTCCCTCCGTTCTAAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
2573 2594 6.097412 GGAAGTACTCCCTCCGTTCTAAAATA 59.903 42.308 0.00 0.00 38.44 1.40
2574 2595 5.105023 GGAAGTACTCCCTCCGTTCTAAAAT 60.105 44.000 0.00 0.00 38.44 1.82
2575 2596 4.221482 GGAAGTACTCCCTCCGTTCTAAAA 59.779 45.833 0.00 0.00 38.44 1.52
2576 2597 3.766051 GGAAGTACTCCCTCCGTTCTAAA 59.234 47.826 0.00 0.00 38.44 1.85
2577 2598 3.011032 AGGAAGTACTCCCTCCGTTCTAA 59.989 47.826 0.00 0.00 46.81 2.10
2578 2599 2.579860 AGGAAGTACTCCCTCCGTTCTA 59.420 50.000 0.00 0.00 46.81 2.10
2579 2600 1.358445 AGGAAGTACTCCCTCCGTTCT 59.642 52.381 0.00 0.00 46.81 3.01
2580 2601 1.849977 AGGAAGTACTCCCTCCGTTC 58.150 55.000 0.00 0.00 46.81 3.95
2581 2602 3.363627 CTTAGGAAGTACTCCCTCCGTT 58.636 50.000 2.82 0.00 46.81 4.44
2582 2603 2.949508 GCTTAGGAAGTACTCCCTCCGT 60.950 54.545 2.82 0.00 46.81 4.69
2583 2604 1.682323 GCTTAGGAAGTACTCCCTCCG 59.318 57.143 2.82 0.00 46.81 4.63
2584 2605 1.682323 CGCTTAGGAAGTACTCCCTCC 59.318 57.143 2.82 3.63 46.81 4.30
2585 2606 2.099427 CACGCTTAGGAAGTACTCCCTC 59.901 54.545 2.82 0.00 46.81 4.30
2586 2607 2.100989 CACGCTTAGGAAGTACTCCCT 58.899 52.381 5.75 5.75 46.81 4.20
2587 2608 1.823610 ACACGCTTAGGAAGTACTCCC 59.176 52.381 0.00 0.00 46.81 4.30
2588 2609 3.057033 TCAACACGCTTAGGAAGTACTCC 60.057 47.826 0.00 0.00 45.81 3.85
2589 2610 4.170292 TCAACACGCTTAGGAAGTACTC 57.830 45.455 0.00 0.00 0.00 2.59
2590 2611 4.803098 ATCAACACGCTTAGGAAGTACT 57.197 40.909 0.00 0.00 0.00 2.73
2591 2612 5.404946 TGTATCAACACGCTTAGGAAGTAC 58.595 41.667 0.00 0.00 0.00 2.73
2592 2613 5.648178 TGTATCAACACGCTTAGGAAGTA 57.352 39.130 0.00 0.00 0.00 2.24
2593 2614 4.530710 TGTATCAACACGCTTAGGAAGT 57.469 40.909 0.00 0.00 0.00 3.01
2594 2615 4.508124 GGATGTATCAACACGCTTAGGAAG 59.492 45.833 0.00 0.00 38.78 3.46
2595 2616 4.439057 GGATGTATCAACACGCTTAGGAA 58.561 43.478 0.00 0.00 38.78 3.36
2596 2617 3.490249 CGGATGTATCAACACGCTTAGGA 60.490 47.826 0.00 0.00 38.78 2.94
2597 2618 2.794910 CGGATGTATCAACACGCTTAGG 59.205 50.000 0.00 0.00 38.78 2.69
2598 2619 3.444916 ACGGATGTATCAACACGCTTAG 58.555 45.455 0.00 0.00 38.78 2.18
2599 2620 3.513680 ACGGATGTATCAACACGCTTA 57.486 42.857 0.00 0.00 38.78 3.09
2600 2621 2.380084 ACGGATGTATCAACACGCTT 57.620 45.000 0.00 0.00 38.78 4.68
2601 2622 2.380084 AACGGATGTATCAACACGCT 57.620 45.000 0.00 0.00 38.78 5.07
2602 2623 2.413796 TCAAACGGATGTATCAACACGC 59.586 45.455 0.00 0.00 38.78 5.34
2603 2624 3.678072 ACTCAAACGGATGTATCAACACG 59.322 43.478 0.00 0.00 38.78 4.49
2604 2625 4.451096 ACACTCAAACGGATGTATCAACAC 59.549 41.667 0.00 0.00 38.78 3.32
2605 2626 4.637276 ACACTCAAACGGATGTATCAACA 58.363 39.130 0.00 0.00 40.69 3.33
2606 2627 4.688879 TGACACTCAAACGGATGTATCAAC 59.311 41.667 0.00 0.00 0.00 3.18
2607 2628 4.888917 TGACACTCAAACGGATGTATCAA 58.111 39.130 0.00 0.00 0.00 2.57
2608 2629 4.529109 TGACACTCAAACGGATGTATCA 57.471 40.909 0.00 0.00 0.00 2.15
2609 2630 4.929808 AGTTGACACTCAAACGGATGTATC 59.070 41.667 0.00 0.00 38.22 2.24
2610 2631 4.894784 AGTTGACACTCAAACGGATGTAT 58.105 39.130 0.00 0.00 38.22 2.29
2611 2632 4.330944 AGTTGACACTCAAACGGATGTA 57.669 40.909 0.00 0.00 38.22 2.29
2612 2633 3.194005 AGTTGACACTCAAACGGATGT 57.806 42.857 0.00 0.00 38.22 3.06
2613 2634 5.862924 ATTAGTTGACACTCAAACGGATG 57.137 39.130 0.00 0.00 38.22 3.51
2625 2646 3.431626 CCTGCATCCGGTATTAGTTGACA 60.432 47.826 0.00 0.00 0.00 3.58
2636 2657 2.097110 TTATACTCCCTGCATCCGGT 57.903 50.000 0.00 0.00 0.00 5.28
2642 2663 7.147391 TGTTCAGGATAAATTATACTCCCTGCA 60.147 37.037 11.49 1.71 39.47 4.41
2644 2665 7.389053 GCTGTTCAGGATAAATTATACTCCCTG 59.611 40.741 10.53 10.53 40.61 4.45
2663 2684 2.722094 ACTGGAAAGTGTTGCTGTTCA 58.278 42.857 0.00 0.00 34.31 3.18
2891 2912 8.438676 AGGATGAGTACAGTTATGTTAAATGC 57.561 34.615 0.00 0.00 41.01 3.56
2971 2992 5.417580 TCATTTGCTACCCTTTCAACATACC 59.582 40.000 0.00 0.00 0.00 2.73
3005 3026 9.546428 TCGTCTGACACATTCATCATTATATTT 57.454 29.630 8.73 0.00 32.17 1.40
3201 3222 3.011818 TGTCAAGTATCAATGCTGCTGG 58.988 45.455 0.00 0.00 0.00 4.85
3273 3294 5.491982 AGTAGGTAAAGCTCAACTTCATGG 58.508 41.667 0.00 0.00 37.75 3.66
3534 3555 6.791887 TCAGTGAATCTCAACAAAGATGAC 57.208 37.500 0.00 0.00 36.14 3.06
3590 3611 8.671921 CAAGAGACTTTTCAGTATGCATAATGT 58.328 33.333 27.85 12.83 34.76 2.71
3672 3693 8.882415 ACATTTACCTAAACATCGGTACATAG 57.118 34.615 0.00 0.00 35.60 2.23
3854 3875 3.744942 CAGCGGAATCAATATCTCCACAG 59.255 47.826 0.00 0.00 0.00 3.66
3961 3982 8.948631 TGCTTTCAACCACAAACATTAAATTA 57.051 26.923 0.00 0.00 0.00 1.40
4006 4027 5.049818 CCATCACTAGGATTTGAAGATTCGC 60.050 44.000 0.00 0.00 32.57 4.70
4146 4168 5.248477 AGAGCCTGTGACTATAAAGGAACAA 59.752 40.000 0.00 0.00 30.92 2.83
4226 4248 6.830838 GGATCCACTAATCAAAATGGTCTCTT 59.169 38.462 6.95 0.00 33.67 2.85
4696 4723 5.404946 CGTAAGATTTTGAACTCCCGAGTA 58.595 41.667 0.00 0.00 39.82 2.59
4850 4877 3.126000 GGAAGCATTAGCACTTCTGTGAC 59.874 47.826 0.00 0.00 46.55 3.67
4861 4888 7.599998 TCAATTTTTCTTTCAGGAAGCATTAGC 59.400 33.333 0.00 0.00 42.56 3.09
4878 4905 5.754890 AGTCATTGGTGCAACTCAATTTTTC 59.245 36.000 2.04 0.00 36.18 2.29
4881 4908 4.099881 ACAGTCATTGGTGCAACTCAATTT 59.900 37.500 2.04 0.00 36.18 1.82
5050 5077 9.499479 AAAATATATCAGATGACATGACTGACC 57.501 33.333 8.56 0.00 42.18 4.02
5068 5095 6.621514 AGGACTCCAAGGTGAGGAAAATATAT 59.378 38.462 0.00 0.00 36.66 0.86
5095 5122 6.687081 ATCCAAAGTTACGAAAGAAACACA 57.313 33.333 0.00 0.00 0.00 3.72
5102 5129 5.009210 TGAACCCAATCCAAAGTTACGAAAG 59.991 40.000 0.00 0.00 0.00 2.62
5154 5181 9.533253 CTCAAAATTTGATAAAACTCAACCAGT 57.467 29.630 9.02 0.00 39.30 4.00
5221 5248 5.180117 GTCAAGCACACTGATACATTGAAGT 59.820 40.000 0.00 0.00 0.00 3.01
5271 5298 6.931838 TGAAACAGAGTTAGAATCCACGTAT 58.068 36.000 0.00 0.00 0.00 3.06
5287 5314 6.173339 GGAATACAAGAGACCATGAAACAGA 58.827 40.000 0.00 0.00 0.00 3.41
5392 5419 1.839424 AAATTTCTCCTCGGCCCAAG 58.161 50.000 0.00 0.00 0.00 3.61
5394 5421 1.074727 TGAAAATTTCTCCTCGGCCCA 59.925 47.619 7.29 0.00 0.00 5.36
5397 5424 4.454504 TGTTACTGAAAATTTCTCCTCGGC 59.545 41.667 7.29 0.00 0.00 5.54
5508 5537 6.396450 AGTAGTTATTCGGTTTTCTGGAGAC 58.604 40.000 0.00 0.00 0.00 3.36
5595 5624 0.329596 ACTGGTCCCTGCCATTCTTC 59.670 55.000 0.00 0.00 37.96 2.87
5625 5654 6.516355 CGACAAAACAATACATTTCTGTCTCG 59.484 38.462 0.00 0.00 36.79 4.04
5655 5684 8.788325 AACTTACGAAAAAGACTTAGGCATAT 57.212 30.769 0.00 0.00 0.00 1.78
5669 5698 8.934507 ACAAAATTGAATGGAACTTACGAAAA 57.065 26.923 0.00 0.00 0.00 2.29
5777 5806 7.255242 CCAAGAAATCAGAAAGCTACAACTGAA 60.255 37.037 13.22 2.23 41.57 3.02
5876 5966 3.894427 TCTCTTCTTGTGTCAGAGAAGCT 59.106 43.478 16.09 0.00 45.33 3.74
5965 6055 9.708092 GTTCTTATTCTTGAGTTGTACTACCTT 57.292 33.333 3.72 0.00 0.00 3.50
5993 6084 5.001232 GGTGACTGCTACCATTTCAGTTTA 58.999 41.667 0.00 0.00 40.74 2.01
6074 6165 2.991250 ACATTGCGAGCCTCTTAACAT 58.009 42.857 0.00 0.00 0.00 2.71
6075 6166 2.472695 ACATTGCGAGCCTCTTAACA 57.527 45.000 0.00 0.00 0.00 2.41
6076 6167 4.630069 TCTTAACATTGCGAGCCTCTTAAC 59.370 41.667 0.00 0.00 0.00 2.01
6077 6168 4.827692 TCTTAACATTGCGAGCCTCTTAA 58.172 39.130 0.00 0.00 0.00 1.85
6078 6169 4.081642 ACTCTTAACATTGCGAGCCTCTTA 60.082 41.667 0.00 0.00 0.00 2.10
6079 6170 3.265791 CTCTTAACATTGCGAGCCTCTT 58.734 45.455 0.00 0.00 0.00 2.85
6080 6171 2.234908 ACTCTTAACATTGCGAGCCTCT 59.765 45.455 0.00 0.00 0.00 3.69
6081 6172 2.622436 ACTCTTAACATTGCGAGCCTC 58.378 47.619 0.00 0.00 0.00 4.70
6082 6173 2.770164 ACTCTTAACATTGCGAGCCT 57.230 45.000 0.00 0.00 0.00 4.58
6083 6174 3.682858 TGTAACTCTTAACATTGCGAGCC 59.317 43.478 0.00 0.00 0.00 4.70
6084 6175 4.201724 CCTGTAACTCTTAACATTGCGAGC 60.202 45.833 0.00 0.00 0.00 5.03
6085 6176 4.201724 GCCTGTAACTCTTAACATTGCGAG 60.202 45.833 0.00 0.00 0.00 5.03
6086 6177 3.682858 GCCTGTAACTCTTAACATTGCGA 59.317 43.478 0.00 0.00 0.00 5.10
6087 6178 3.684788 AGCCTGTAACTCTTAACATTGCG 59.315 43.478 0.00 0.00 31.95 4.85
6088 6179 5.629079 AAGCCTGTAACTCTTAACATTGC 57.371 39.130 0.00 0.00 0.00 3.56
6089 6180 7.387948 ACTGTAAGCCTGTAACTCTTAACATTG 59.612 37.037 0.00 0.00 37.60 2.82
6090 6181 7.450903 ACTGTAAGCCTGTAACTCTTAACATT 58.549 34.615 0.00 0.00 37.60 2.71
6195 6293 9.681062 TCGAAGAAGGAATAAATTTATGGAGTT 57.319 29.630 11.42 3.80 0.00 3.01
6198 6296 9.627123 ACATCGAAGAAGGAATAAATTTATGGA 57.373 29.630 11.42 0.00 43.58 3.41
6314 6429 5.371526 TGAGATAGGAATAGCTGGCAAAAG 58.628 41.667 0.00 0.00 0.00 2.27
6321 6436 3.932545 ACGCTGAGATAGGAATAGCTG 57.067 47.619 0.00 0.00 32.43 4.24
6363 6478 5.469479 CATATTTTTCGTTTCTGCAAGGGT 58.531 37.500 0.00 0.00 0.00 4.34
6406 7121 7.968405 GCACCGATTATCAAGATTAAAACTGTT 59.032 33.333 0.00 0.00 0.00 3.16
6445 7161 7.095187 CCCTATATTTCGGTTTATCTCAACTGC 60.095 40.741 0.00 0.00 33.60 4.40
6446 7162 7.931948 ACCCTATATTTCGGTTTATCTCAACTG 59.068 37.037 0.00 0.00 34.72 3.16
6448 7164 9.768662 TTACCCTATATTTCGGTTTATCTCAAC 57.231 33.333 0.00 0.00 0.00 3.18
6455 7171 8.926374 TGTGAGATTACCCTATATTTCGGTTTA 58.074 33.333 0.00 0.00 0.00 2.01
6459 7176 5.869888 GCTGTGAGATTACCCTATATTTCGG 59.130 44.000 0.00 0.00 0.00 4.30
6461 7178 8.677148 TTTGCTGTGAGATTACCCTATATTTC 57.323 34.615 0.00 0.00 0.00 2.17
6472 7189 9.679661 TGGAGTTAATATTTTGCTGTGAGATTA 57.320 29.630 0.00 0.00 0.00 1.75
6475 7192 7.994425 TTGGAGTTAATATTTTGCTGTGAGA 57.006 32.000 0.00 0.00 0.00 3.27
6487 7204 5.687166 TCTCGGGTGTTTGGAGTTAATAT 57.313 39.130 0.00 0.00 0.00 1.28
6488 7205 5.221682 TGTTCTCGGGTGTTTGGAGTTAATA 60.222 40.000 0.00 0.00 0.00 0.98
6490 7207 3.118334 TGTTCTCGGGTGTTTGGAGTTAA 60.118 43.478 0.00 0.00 0.00 2.01
6491 7208 2.435069 TGTTCTCGGGTGTTTGGAGTTA 59.565 45.455 0.00 0.00 0.00 2.24
6632 7351 0.681733 ATGGACAGACGCTGACTTGT 59.318 50.000 12.77 0.00 35.18 3.16
6633 7352 2.094494 ACTATGGACAGACGCTGACTTG 60.094 50.000 12.77 2.49 35.18 3.16
6704 7423 2.795329 TGATTGAAGACTTGAAGCCCC 58.205 47.619 0.14 0.00 0.00 5.80
6708 7427 8.131100 TGTTTAGCTTTGATTGAAGACTTGAAG 58.869 33.333 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.