Multiple sequence alignment - TraesCS1B01G108600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G108600 chr1B 100.000 3133 0 0 1 3133 120656483 120653351 0 5786
1 TraesCS1B01G108600 chr1B 86.901 1252 114 27 1 1251 157276603 157275401 0 1358
2 TraesCS1B01G108600 chr1B 92.415 646 43 4 1248 1890 157275353 157274711 0 917
3 TraesCS1B01G108600 chr1D 95.568 2775 77 10 1 2770 77012005 77009272 0 4401


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G108600 chr1B 120653351 120656483 3132 True 5786.0 5786 100.000 1 3133 1 chr1B.!!$R1 3132
1 TraesCS1B01G108600 chr1B 157274711 157276603 1892 True 1137.5 1358 89.658 1 1890 2 chr1B.!!$R2 1889
2 TraesCS1B01G108600 chr1D 77009272 77012005 2733 True 4401.0 4401 95.568 1 2770 1 chr1D.!!$R1 2769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 468 2.293184 ACTGGTAGTGGAGGTGGATGAT 60.293 50.0 0.0 0.0 0.0 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 2246 0.514691 CGAGGTGCTGAACTTTGCTC 59.485 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 3.424703 CATGAATGGTGGAAGGACTTGT 58.575 45.455 0.00 0.00 0.00 3.16
337 338 2.562738 TCGATCAGAAGAAAGAGCACCA 59.437 45.455 0.00 0.00 0.00 4.17
360 388 6.183360 CCATAAGGACGAACAGGAGAAGATTA 60.183 42.308 0.00 0.00 36.89 1.75
392 447 6.157471 TGAAGGAGAATGATGATGAGGAGAAA 59.843 38.462 0.00 0.00 0.00 2.52
413 468 2.293184 ACTGGTAGTGGAGGTGGATGAT 60.293 50.000 0.00 0.00 0.00 2.45
429 484 6.598457 GGTGGATGATAAGAATGATGATGAGG 59.402 42.308 0.00 0.00 0.00 3.86
430 485 7.392418 GTGGATGATAAGAATGATGATGAGGA 58.608 38.462 0.00 0.00 0.00 3.71
431 486 7.549842 GTGGATGATAAGAATGATGATGAGGAG 59.450 40.741 0.00 0.00 0.00 3.69
472 527 9.656040 TGAAAAGGTTGATGAAAATGATAATGG 57.344 29.630 0.00 0.00 0.00 3.16
485 540 6.596869 AATGATAATGGAAAGGAGGAGGAA 57.403 37.500 0.00 0.00 0.00 3.36
509 564 2.649742 TGGAGGTGAAGGAGAAGGAT 57.350 50.000 0.00 0.00 0.00 3.24
522 577 7.456902 TGAAGGAGAAGGATGATGATGATGATA 59.543 37.037 0.00 0.00 0.00 2.15
627 682 8.975295 AGAAGGACGATGATAATGATGATGATA 58.025 33.333 0.00 0.00 0.00 2.15
698 756 5.163216 GGAGGAGAAAAGTGATGATGAGGAT 60.163 44.000 0.00 0.00 0.00 3.24
818 876 3.932822 TGCCTTGTTTCAGCTATTACGA 58.067 40.909 0.00 0.00 0.00 3.43
980 1038 2.939103 CGATCATTTCTTCTCCACCACC 59.061 50.000 0.00 0.00 0.00 4.61
1014 1072 3.755905 CAGTGCACATGGTACCATTAACA 59.244 43.478 25.25 18.60 33.90 2.41
1016 1074 4.640201 AGTGCACATGGTACCATTAACATC 59.360 41.667 25.25 15.17 32.90 3.06
1384 1493 4.010349 CTGGTGGGGTCTTTGTCTTATTC 58.990 47.826 0.00 0.00 0.00 1.75
1529 1638 2.369860 AGAGAGCAATGGTCAACTGTCA 59.630 45.455 15.20 0.00 31.89 3.58
1564 1673 4.229096 TCATTGCGACAGAATTTTCAAGC 58.771 39.130 0.00 0.00 0.00 4.01
1817 1929 0.108615 ATGAAGTGAGGAACGAGGCG 60.109 55.000 0.00 0.00 0.00 5.52
1906 2018 1.148310 CATGAGACGACCTTTGCGTT 58.852 50.000 0.00 0.00 42.77 4.84
1964 2076 3.632333 AGATGACAGTCGGTGGAAGATA 58.368 45.455 0.00 0.00 0.00 1.98
1974 2086 2.546795 CGGTGGAAGATACTGGCAGATC 60.547 54.545 23.66 18.25 0.00 2.75
1998 2110 8.078060 TCTCTGGACTGAAATGATATTGTACA 57.922 34.615 0.00 0.00 0.00 2.90
1999 2111 8.708378 TCTCTGGACTGAAATGATATTGTACAT 58.292 33.333 0.00 0.00 0.00 2.29
2057 2169 2.642311 TCTGGCAAATGGAGGTGAGTTA 59.358 45.455 0.00 0.00 0.00 2.24
2125 2237 1.613836 GATCAACAGATCCATGGCCC 58.386 55.000 6.96 0.40 33.58 5.80
2127 2239 0.256752 TCAACAGATCCATGGCCCTG 59.743 55.000 23.31 23.31 0.00 4.45
2128 2240 0.256752 CAACAGATCCATGGCCCTGA 59.743 55.000 28.52 6.40 0.00 3.86
2129 2241 0.257039 AACAGATCCATGGCCCTGAC 59.743 55.000 28.52 9.74 0.00 3.51
2130 2242 0.622738 ACAGATCCATGGCCCTGACT 60.623 55.000 28.52 12.73 0.00 3.41
2131 2243 0.179026 CAGATCCATGGCCCTGACTG 60.179 60.000 21.56 11.43 0.00 3.51
2132 2244 0.326904 AGATCCATGGCCCTGACTGA 60.327 55.000 9.96 0.00 0.00 3.41
2133 2245 0.769873 GATCCATGGCCCTGACTGAT 59.230 55.000 9.96 3.86 0.00 2.90
2134 2246 0.477204 ATCCATGGCCCTGACTGATG 59.523 55.000 9.96 0.00 0.00 3.07
2137 2249 0.818445 CATGGCCCTGACTGATGAGC 60.818 60.000 0.97 0.00 0.00 4.26
2139 2251 1.300963 GGCCCTGACTGATGAGCAA 59.699 57.895 0.00 0.00 0.00 3.91
2140 2252 0.322816 GGCCCTGACTGATGAGCAAA 60.323 55.000 0.00 0.00 0.00 3.68
2141 2253 1.093159 GCCCTGACTGATGAGCAAAG 58.907 55.000 0.00 0.00 0.00 2.77
2144 2256 2.746362 CCCTGACTGATGAGCAAAGTTC 59.254 50.000 0.00 0.00 0.00 3.01
2145 2257 3.405831 CCTGACTGATGAGCAAAGTTCA 58.594 45.455 0.00 0.00 0.00 3.18
2294 2406 3.002656 GCATCAATGGAGTGTCGTATTGG 59.997 47.826 0.00 0.00 32.76 3.16
2326 2438 1.174712 TTCAAGCTCCACCAAGCAGC 61.175 55.000 0.00 0.00 45.00 5.25
2332 2444 2.674380 CCACCAAGCAGCCCTGAC 60.674 66.667 0.00 0.00 0.00 3.51
2358 2470 6.719829 TGAATAAGTGTGAGGTCTCTTCACTA 59.280 38.462 19.97 13.25 40.95 2.74
2361 2473 4.929479 AGTGTGAGGTCTCTTCACTATCT 58.071 43.478 19.03 6.43 40.49 1.98
2410 2522 8.799367 TCAGTTGTTTGCTAGTACTAGTCAATA 58.201 33.333 26.76 18.92 35.65 1.90
2451 2563 8.812972 AGTTGTAAGACCTGTTATGACAATCTA 58.187 33.333 4.93 0.00 34.85 1.98
2452 2564 9.088512 GTTGTAAGACCTGTTATGACAATCTAG 57.911 37.037 4.93 0.00 34.85 2.43
2453 2565 8.362464 TGTAAGACCTGTTATGACAATCTAGT 57.638 34.615 4.93 0.00 34.85 2.57
2454 2566 8.467598 TGTAAGACCTGTTATGACAATCTAGTC 58.532 37.037 4.93 0.00 38.99 2.59
2517 2629 5.449177 GCCTTTCACTCTGTAATATGGTTGC 60.449 44.000 0.00 0.00 0.00 4.17
2539 2651 3.064545 CGATTTCCACTCAAGAAGATGGC 59.935 47.826 0.00 0.00 31.87 4.40
2555 2667 4.655963 AGATGGCTGTGATTTGTTAGTGT 58.344 39.130 0.00 0.00 0.00 3.55
2556 2668 5.804639 AGATGGCTGTGATTTGTTAGTGTA 58.195 37.500 0.00 0.00 0.00 2.90
2559 2671 8.046708 AGATGGCTGTGATTTGTTAGTGTAATA 58.953 33.333 0.00 0.00 0.00 0.98
2560 2672 8.752005 ATGGCTGTGATTTGTTAGTGTAATAT 57.248 30.769 0.00 0.00 0.00 1.28
2561 2673 7.984391 TGGCTGTGATTTGTTAGTGTAATATG 58.016 34.615 0.00 0.00 0.00 1.78
2562 2674 7.066887 TGGCTGTGATTTGTTAGTGTAATATGG 59.933 37.037 0.00 0.00 0.00 2.74
2563 2675 7.067008 GGCTGTGATTTGTTAGTGTAATATGGT 59.933 37.037 0.00 0.00 0.00 3.55
2564 2676 8.458843 GCTGTGATTTGTTAGTGTAATATGGTT 58.541 33.333 0.00 0.00 0.00 3.67
2565 2677 9.773328 CTGTGATTTGTTAGTGTAATATGGTTG 57.227 33.333 0.00 0.00 0.00 3.77
2566 2678 8.240682 TGTGATTTGTTAGTGTAATATGGTTGC 58.759 33.333 0.00 0.00 0.00 4.17
2567 2679 7.428183 GTGATTTGTTAGTGTAATATGGTTGCG 59.572 37.037 0.00 0.00 0.00 4.85
2568 2680 7.334671 TGATTTGTTAGTGTAATATGGTTGCGA 59.665 33.333 0.00 0.00 0.00 5.10
2569 2681 7.618502 TTTGTTAGTGTAATATGGTTGCGAT 57.381 32.000 0.00 0.00 0.00 4.58
2570 2682 7.618502 TTGTTAGTGTAATATGGTTGCGATT 57.381 32.000 0.00 0.00 0.00 3.34
2571 2683 7.618502 TGTTAGTGTAATATGGTTGCGATTT 57.381 32.000 0.00 0.00 0.00 2.17
2572 2684 7.690228 TGTTAGTGTAATATGGTTGCGATTTC 58.310 34.615 0.00 0.00 0.00 2.17
2573 2685 7.551262 TGTTAGTGTAATATGGTTGCGATTTCT 59.449 33.333 0.00 0.00 0.00 2.52
2574 2686 9.037737 GTTAGTGTAATATGGTTGCGATTTCTA 57.962 33.333 0.00 0.00 0.00 2.10
2575 2687 7.715265 AGTGTAATATGGTTGCGATTTCTAG 57.285 36.000 0.00 0.00 0.00 2.43
2576 2688 7.272978 AGTGTAATATGGTTGCGATTTCTAGT 58.727 34.615 0.00 0.00 0.00 2.57
2577 2689 7.438459 AGTGTAATATGGTTGCGATTTCTAGTC 59.562 37.037 0.00 0.00 0.00 2.59
2578 2690 7.223971 GTGTAATATGGTTGCGATTTCTAGTCA 59.776 37.037 0.00 0.00 0.00 3.41
2579 2691 7.766738 TGTAATATGGTTGCGATTTCTAGTCAA 59.233 33.333 0.00 0.00 0.00 3.18
2580 2692 7.807977 AATATGGTTGCGATTTCTAGTCAAT 57.192 32.000 0.00 0.00 0.00 2.57
2581 2693 8.902540 AATATGGTTGCGATTTCTAGTCAATA 57.097 30.769 0.00 0.00 0.00 1.90
2582 2694 9.507329 AATATGGTTGCGATTTCTAGTCAATAT 57.493 29.630 0.00 0.00 0.00 1.28
2583 2695 6.844696 TGGTTGCGATTTCTAGTCAATATC 57.155 37.500 0.00 0.00 0.00 1.63
2584 2696 6.345298 TGGTTGCGATTTCTAGTCAATATCA 58.655 36.000 0.00 0.00 0.00 2.15
2613 2725 4.694760 TGCTGATATGGATGCTAACTGT 57.305 40.909 0.00 0.00 0.00 3.55
2659 2771 4.860352 GGGTTTGGTCAAATATGTTTACGC 59.140 41.667 0.00 0.00 32.36 4.42
2686 2798 1.106351 TGCAGGGCAACACGTGATTT 61.106 50.000 25.01 3.65 34.76 2.17
2694 2806 1.269174 CAACACGTGATTTCCCATGCA 59.731 47.619 25.01 0.00 0.00 3.96
2713 2826 9.028284 CCCATGCATTTATTATAAGTTGATCCT 57.972 33.333 0.00 0.00 0.00 3.24
2750 2863 3.443681 CAGGTTCGCAATGGTTATTTCCT 59.556 43.478 0.00 0.00 0.00 3.36
2756 2869 3.181497 CGCAATGGTTATTTCCTCTGTGG 60.181 47.826 0.00 0.00 37.10 4.17
2757 2870 3.429410 GCAATGGTTATTTCCTCTGTGGC 60.429 47.826 0.00 0.00 35.26 5.01
2758 2871 3.737559 ATGGTTATTTCCTCTGTGGCA 57.262 42.857 0.00 0.00 35.26 4.92
2762 2875 3.131046 GGTTATTTCCTCTGTGGCATTGG 59.869 47.826 0.00 0.00 35.26 3.16
2770 2883 1.133513 TCTGTGGCATTGGTCCAAGTT 60.134 47.619 10.72 0.00 35.01 2.66
2771 2884 2.107378 TCTGTGGCATTGGTCCAAGTTA 59.893 45.455 10.72 0.00 35.01 2.24
2772 2885 2.228822 CTGTGGCATTGGTCCAAGTTAC 59.771 50.000 10.72 7.19 35.01 2.50
2773 2886 1.544246 GTGGCATTGGTCCAAGTTACC 59.456 52.381 10.72 8.91 35.01 2.85
2774 2887 0.808755 GGCATTGGTCCAAGTTACCG 59.191 55.000 10.72 0.00 40.08 4.02
2775 2888 1.612199 GGCATTGGTCCAAGTTACCGA 60.612 52.381 10.72 0.00 40.08 4.69
2776 2889 1.737793 GCATTGGTCCAAGTTACCGAG 59.262 52.381 10.72 0.00 40.08 4.63
2777 2890 1.737793 CATTGGTCCAAGTTACCGAGC 59.262 52.381 10.72 0.00 40.08 5.03
2778 2891 0.759959 TTGGTCCAAGTTACCGAGCA 59.240 50.000 0.00 0.00 40.08 4.26
2779 2892 0.034337 TGGTCCAAGTTACCGAGCAC 59.966 55.000 0.00 0.00 40.08 4.40
2780 2893 0.672711 GGTCCAAGTTACCGAGCACC 60.673 60.000 0.00 0.00 0.00 5.01
2781 2894 0.320697 GTCCAAGTTACCGAGCACCT 59.679 55.000 0.00 0.00 0.00 4.00
2782 2895 0.606604 TCCAAGTTACCGAGCACCTC 59.393 55.000 0.00 0.00 0.00 3.85
2783 2896 0.391263 CCAAGTTACCGAGCACCTCC 60.391 60.000 0.00 0.00 0.00 4.30
2784 2897 0.608640 CAAGTTACCGAGCACCTCCT 59.391 55.000 0.00 0.00 0.00 3.69
2785 2898 0.896226 AAGTTACCGAGCACCTCCTC 59.104 55.000 0.00 0.00 0.00 3.71
2792 2905 3.657956 GAGCACCTCCTCGAATGAG 57.342 57.895 4.94 4.94 42.18 2.90
2793 2906 1.107114 GAGCACCTCCTCGAATGAGA 58.893 55.000 12.06 0.00 45.57 3.27
2794 2907 1.066908 GAGCACCTCCTCGAATGAGAG 59.933 57.143 12.06 4.29 45.57 3.20
2795 2908 1.107114 GCACCTCCTCGAATGAGAGA 58.893 55.000 12.06 0.00 45.57 3.10
2796 2909 1.478510 GCACCTCCTCGAATGAGAGAA 59.521 52.381 12.06 0.00 45.57 2.87
2797 2910 2.102252 GCACCTCCTCGAATGAGAGAAT 59.898 50.000 12.06 0.00 45.57 2.40
2798 2911 3.715495 CACCTCCTCGAATGAGAGAATG 58.285 50.000 12.06 3.42 45.57 2.67
2799 2912 3.131933 CACCTCCTCGAATGAGAGAATGT 59.868 47.826 12.06 0.49 45.57 2.71
2800 2913 3.131933 ACCTCCTCGAATGAGAGAATGTG 59.868 47.826 12.06 0.00 45.57 3.21
2801 2914 3.382865 CCTCCTCGAATGAGAGAATGTGA 59.617 47.826 12.06 0.00 45.57 3.58
2802 2915 4.039004 CCTCCTCGAATGAGAGAATGTGAT 59.961 45.833 12.06 0.00 45.57 3.06
2803 2916 4.941657 TCCTCGAATGAGAGAATGTGATG 58.058 43.478 0.00 0.00 45.57 3.07
2804 2917 3.493877 CCTCGAATGAGAGAATGTGATGC 59.506 47.826 0.00 0.00 45.57 3.91
2805 2918 3.461061 TCGAATGAGAGAATGTGATGCC 58.539 45.455 0.00 0.00 0.00 4.40
2806 2919 2.547211 CGAATGAGAGAATGTGATGCCC 59.453 50.000 0.00 0.00 0.00 5.36
2807 2920 3.743584 CGAATGAGAGAATGTGATGCCCT 60.744 47.826 0.00 0.00 0.00 5.19
2808 2921 2.704464 TGAGAGAATGTGATGCCCTG 57.296 50.000 0.00 0.00 0.00 4.45
2809 2922 1.911357 TGAGAGAATGTGATGCCCTGT 59.089 47.619 0.00 0.00 0.00 4.00
2810 2923 2.286872 GAGAGAATGTGATGCCCTGTG 58.713 52.381 0.00 0.00 0.00 3.66
2811 2924 1.064906 AGAGAATGTGATGCCCTGTGG 60.065 52.381 0.00 0.00 0.00 4.17
2812 2925 0.700564 AGAATGTGATGCCCTGTGGT 59.299 50.000 0.00 0.00 0.00 4.16
2813 2926 1.098050 GAATGTGATGCCCTGTGGTC 58.902 55.000 0.00 0.00 0.00 4.02
2814 2927 0.700564 AATGTGATGCCCTGTGGTCT 59.299 50.000 0.00 0.00 0.00 3.85
2815 2928 0.700564 ATGTGATGCCCTGTGGTCTT 59.299 50.000 0.00 0.00 0.00 3.01
2816 2929 0.250858 TGTGATGCCCTGTGGTCTTG 60.251 55.000 0.00 0.00 0.00 3.02
2817 2930 0.250901 GTGATGCCCTGTGGTCTTGT 60.251 55.000 0.00 0.00 0.00 3.16
2818 2931 0.478072 TGATGCCCTGTGGTCTTGTT 59.522 50.000 0.00 0.00 0.00 2.83
2819 2932 1.702401 TGATGCCCTGTGGTCTTGTTA 59.298 47.619 0.00 0.00 0.00 2.41
2820 2933 2.308570 TGATGCCCTGTGGTCTTGTTAT 59.691 45.455 0.00 0.00 0.00 1.89
2821 2934 2.198827 TGCCCTGTGGTCTTGTTATG 57.801 50.000 0.00 0.00 0.00 1.90
2822 2935 1.271871 TGCCCTGTGGTCTTGTTATGG 60.272 52.381 0.00 0.00 0.00 2.74
2823 2936 1.271926 GCCCTGTGGTCTTGTTATGGT 60.272 52.381 0.00 0.00 0.00 3.55
2824 2937 2.711542 CCCTGTGGTCTTGTTATGGTC 58.288 52.381 0.00 0.00 0.00 4.02
2825 2938 2.305927 CCCTGTGGTCTTGTTATGGTCT 59.694 50.000 0.00 0.00 0.00 3.85
2826 2939 3.244911 CCCTGTGGTCTTGTTATGGTCTT 60.245 47.826 0.00 0.00 0.00 3.01
2827 2940 3.753272 CCTGTGGTCTTGTTATGGTCTTG 59.247 47.826 0.00 0.00 0.00 3.02
2828 2941 4.389374 CTGTGGTCTTGTTATGGTCTTGT 58.611 43.478 0.00 0.00 0.00 3.16
2829 2942 4.133820 TGTGGTCTTGTTATGGTCTTGTG 58.866 43.478 0.00 0.00 0.00 3.33
2830 2943 4.141597 TGTGGTCTTGTTATGGTCTTGTGA 60.142 41.667 0.00 0.00 0.00 3.58
2831 2944 4.819630 GTGGTCTTGTTATGGTCTTGTGAA 59.180 41.667 0.00 0.00 0.00 3.18
2832 2945 5.049405 GTGGTCTTGTTATGGTCTTGTGAAG 60.049 44.000 0.00 0.00 0.00 3.02
2833 2946 4.083271 GGTCTTGTTATGGTCTTGTGAAGC 60.083 45.833 0.00 0.00 0.00 3.86
2834 2947 4.757149 GTCTTGTTATGGTCTTGTGAAGCT 59.243 41.667 0.00 0.00 0.00 3.74
2835 2948 4.756642 TCTTGTTATGGTCTTGTGAAGCTG 59.243 41.667 0.00 0.00 0.00 4.24
2836 2949 2.813754 TGTTATGGTCTTGTGAAGCTGC 59.186 45.455 0.00 0.00 0.00 5.25
2837 2950 2.113860 TATGGTCTTGTGAAGCTGCC 57.886 50.000 0.00 0.00 0.00 4.85
2838 2951 0.111061 ATGGTCTTGTGAAGCTGCCA 59.889 50.000 0.00 0.00 0.00 4.92
2839 2952 0.819259 TGGTCTTGTGAAGCTGCCAC 60.819 55.000 11.39 11.39 35.23 5.01
2840 2953 1.518903 GGTCTTGTGAAGCTGCCACC 61.519 60.000 14.59 0.00 33.80 4.61
2841 2954 0.536006 GTCTTGTGAAGCTGCCACCT 60.536 55.000 14.59 0.00 33.80 4.00
2842 2955 1.055849 TCTTGTGAAGCTGCCACCTA 58.944 50.000 14.59 4.81 33.80 3.08
2843 2956 1.630369 TCTTGTGAAGCTGCCACCTAT 59.370 47.619 14.59 0.00 33.80 2.57
2844 2957 1.741706 CTTGTGAAGCTGCCACCTATG 59.258 52.381 14.59 2.16 33.80 2.23
2845 2958 0.677731 TGTGAAGCTGCCACCTATGC 60.678 55.000 14.59 0.00 33.80 3.14
2846 2959 0.677731 GTGAAGCTGCCACCTATGCA 60.678 55.000 7.98 0.00 37.17 3.96
2847 2960 0.038021 TGAAGCTGCCACCTATGCAA 59.962 50.000 0.00 0.00 38.46 4.08
2848 2961 0.453390 GAAGCTGCCACCTATGCAAC 59.547 55.000 0.00 0.00 38.46 4.17
2849 2962 0.251297 AAGCTGCCACCTATGCAACA 60.251 50.000 0.00 0.00 38.46 3.33
2850 2963 0.033796 AGCTGCCACCTATGCAACAT 60.034 50.000 0.00 0.00 38.46 2.71
2851 2964 0.819582 GCTGCCACCTATGCAACATT 59.180 50.000 0.00 0.00 38.46 2.71
2852 2965 1.470285 GCTGCCACCTATGCAACATTG 60.470 52.381 0.00 0.00 38.46 2.82
2853 2966 2.093890 CTGCCACCTATGCAACATTGA 58.906 47.619 0.00 0.00 38.46 2.57
2854 2967 2.492881 CTGCCACCTATGCAACATTGAA 59.507 45.455 0.00 0.00 38.46 2.69
2855 2968 2.896044 TGCCACCTATGCAACATTGAAA 59.104 40.909 0.00 0.00 35.40 2.69
2856 2969 3.514706 TGCCACCTATGCAACATTGAAAT 59.485 39.130 0.00 0.00 35.40 2.17
2857 2970 4.020396 TGCCACCTATGCAACATTGAAATT 60.020 37.500 0.00 0.00 35.40 1.82
2858 2971 4.330620 GCCACCTATGCAACATTGAAATTG 59.669 41.667 0.00 0.00 0.00 2.32
2859 2972 5.722263 CCACCTATGCAACATTGAAATTGA 58.278 37.500 0.00 0.00 0.00 2.57
2860 2973 5.577945 CCACCTATGCAACATTGAAATTGAC 59.422 40.000 0.00 0.00 0.00 3.18
2861 2974 6.157904 CACCTATGCAACATTGAAATTGACA 58.842 36.000 0.00 0.00 0.00 3.58
2862 2975 6.645827 CACCTATGCAACATTGAAATTGACAA 59.354 34.615 0.00 0.00 0.00 3.18
2863 2976 7.332430 CACCTATGCAACATTGAAATTGACAAT 59.668 33.333 0.00 0.00 38.30 2.71
2882 2995 9.679661 TTGACAATGACTAATTATACATGTGGT 57.320 29.630 9.11 0.00 0.00 4.16
2883 2996 9.108284 TGACAATGACTAATTATACATGTGGTG 57.892 33.333 9.11 0.00 0.00 4.17
2884 2997 9.109393 GACAATGACTAATTATACATGTGGTGT 57.891 33.333 9.11 0.00 44.95 4.16
2885 2998 8.892723 ACAATGACTAATTATACATGTGGTGTG 58.107 33.333 9.11 0.00 42.24 3.82
2886 2999 6.918892 TGACTAATTATACATGTGGTGTGC 57.081 37.500 9.11 0.00 42.24 4.57
2887 3000 6.410540 TGACTAATTATACATGTGGTGTGCA 58.589 36.000 9.11 0.00 42.24 4.57
2888 3001 6.315144 TGACTAATTATACATGTGGTGTGCAC 59.685 38.462 10.75 10.75 42.24 4.57
2889 3002 6.414732 ACTAATTATACATGTGGTGTGCACT 58.585 36.000 19.41 0.00 42.24 4.40
2890 3003 6.884295 ACTAATTATACATGTGGTGTGCACTT 59.116 34.615 19.41 0.85 42.24 3.16
2891 3004 5.818136 ATTATACATGTGGTGTGCACTTC 57.182 39.130 19.41 10.98 42.24 3.01
2892 3005 2.928801 TACATGTGGTGTGCACTTCT 57.071 45.000 19.41 0.00 42.24 2.85
2893 3006 2.928801 ACATGTGGTGTGCACTTCTA 57.071 45.000 19.41 6.49 40.28 2.10
2894 3007 3.207265 ACATGTGGTGTGCACTTCTAA 57.793 42.857 19.41 1.31 40.28 2.10
2895 3008 3.550820 ACATGTGGTGTGCACTTCTAAA 58.449 40.909 19.41 4.92 40.28 1.85
2896 3009 4.144297 ACATGTGGTGTGCACTTCTAAAT 58.856 39.130 19.41 7.06 40.28 1.40
2897 3010 4.584325 ACATGTGGTGTGCACTTCTAAATT 59.416 37.500 19.41 0.00 40.28 1.82
2898 3011 4.566545 TGTGGTGTGCACTTCTAAATTG 57.433 40.909 19.41 0.00 0.00 2.32
2899 3012 3.317711 TGTGGTGTGCACTTCTAAATTGG 59.682 43.478 19.41 0.00 0.00 3.16
2900 3013 2.295909 TGGTGTGCACTTCTAAATTGGC 59.704 45.455 19.41 0.00 0.00 4.52
2901 3014 2.558359 GGTGTGCACTTCTAAATTGGCT 59.442 45.455 19.41 0.00 0.00 4.75
2902 3015 3.568538 GTGTGCACTTCTAAATTGGCTG 58.431 45.455 19.41 0.00 0.00 4.85
2903 3016 3.253188 GTGTGCACTTCTAAATTGGCTGA 59.747 43.478 19.41 0.00 0.00 4.26
2904 3017 3.888323 TGTGCACTTCTAAATTGGCTGAA 59.112 39.130 19.41 0.00 0.00 3.02
2905 3018 4.229876 GTGCACTTCTAAATTGGCTGAAC 58.770 43.478 10.32 0.00 0.00 3.18
2906 3019 4.022849 GTGCACTTCTAAATTGGCTGAACT 60.023 41.667 10.32 0.00 0.00 3.01
2907 3020 4.216257 TGCACTTCTAAATTGGCTGAACTC 59.784 41.667 0.00 0.00 0.00 3.01
2908 3021 4.457257 GCACTTCTAAATTGGCTGAACTCT 59.543 41.667 0.00 0.00 0.00 3.24
2909 3022 5.048434 GCACTTCTAAATTGGCTGAACTCTT 60.048 40.000 0.00 0.00 0.00 2.85
2910 3023 6.515696 GCACTTCTAAATTGGCTGAACTCTTT 60.516 38.462 0.00 0.00 0.00 2.52
2911 3024 7.308589 GCACTTCTAAATTGGCTGAACTCTTTA 60.309 37.037 0.00 0.00 0.00 1.85
2912 3025 8.734386 CACTTCTAAATTGGCTGAACTCTTTAT 58.266 33.333 0.00 0.00 0.00 1.40
2913 3026 9.959721 ACTTCTAAATTGGCTGAACTCTTTATA 57.040 29.630 0.00 0.00 0.00 0.98
2920 3033 8.707938 ATTGGCTGAACTCTTTATATTTTTGC 57.292 30.769 0.00 0.00 0.00 3.68
2921 3034 7.225784 TGGCTGAACTCTTTATATTTTTGCA 57.774 32.000 0.00 0.00 0.00 4.08
2922 3035 7.839907 TGGCTGAACTCTTTATATTTTTGCAT 58.160 30.769 0.00 0.00 0.00 3.96
2923 3036 8.965819 TGGCTGAACTCTTTATATTTTTGCATA 58.034 29.630 0.00 0.00 0.00 3.14
2924 3037 9.801873 GGCTGAACTCTTTATATTTTTGCATAA 57.198 29.630 0.00 0.00 0.00 1.90
2974 3087 7.310072 TGACTAGACTCTAGAAATTCTCACG 57.690 40.000 18.41 0.00 0.00 4.35
2975 3088 6.879993 TGACTAGACTCTAGAAATTCTCACGT 59.120 38.462 18.41 0.00 0.00 4.49
2976 3089 7.064847 TGACTAGACTCTAGAAATTCTCACGTC 59.935 40.741 18.41 4.76 0.00 4.34
2977 3090 6.879993 ACTAGACTCTAGAAATTCTCACGTCA 59.120 38.462 18.41 6.15 0.00 4.35
2978 3091 6.576662 AGACTCTAGAAATTCTCACGTCAA 57.423 37.500 15.65 0.00 0.00 3.18
2979 3092 7.164230 AGACTCTAGAAATTCTCACGTCAAT 57.836 36.000 15.65 0.00 0.00 2.57
2980 3093 7.254852 AGACTCTAGAAATTCTCACGTCAATC 58.745 38.462 15.65 1.42 0.00 2.67
2981 3094 6.925211 ACTCTAGAAATTCTCACGTCAATCA 58.075 36.000 0.00 0.00 0.00 2.57
2982 3095 7.032580 ACTCTAGAAATTCTCACGTCAATCAG 58.967 38.462 0.00 0.00 0.00 2.90
2983 3096 7.094162 ACTCTAGAAATTCTCACGTCAATCAGA 60.094 37.037 0.00 0.00 0.00 3.27
2984 3097 7.254137 TCTAGAAATTCTCACGTCAATCAGAG 58.746 38.462 0.00 0.00 0.00 3.35
2985 3098 6.030548 AGAAATTCTCACGTCAATCAGAGA 57.969 37.500 0.00 0.00 35.49 3.10
2987 3100 6.931281 AGAAATTCTCACGTCAATCAGAGAAA 59.069 34.615 15.17 3.05 46.49 2.52
2988 3101 7.442364 AGAAATTCTCACGTCAATCAGAGAAAA 59.558 33.333 15.17 0.00 46.49 2.29
2989 3102 7.678947 AATTCTCACGTCAATCAGAGAAAAT 57.321 32.000 15.17 7.16 46.49 1.82
2990 3103 8.777865 AATTCTCACGTCAATCAGAGAAAATA 57.222 30.769 15.17 0.00 46.49 1.40
2991 3104 8.777865 ATTCTCACGTCAATCAGAGAAAATAA 57.222 30.769 15.17 0.00 46.49 1.40
2992 3105 8.601845 TTCTCACGTCAATCAGAGAAAATAAA 57.398 30.769 10.36 0.00 42.33 1.40
2993 3106 8.777865 TCTCACGTCAATCAGAGAAAATAAAT 57.222 30.769 0.00 0.00 34.45 1.40
2994 3107 9.219603 TCTCACGTCAATCAGAGAAAATAAATT 57.780 29.630 0.00 0.00 34.45 1.82
3018 3131 8.918202 TTATATCCATCTAACATTTGTGGGAC 57.082 34.615 0.00 0.00 0.00 4.46
3019 3132 3.963129 TCCATCTAACATTTGTGGGACC 58.037 45.455 0.00 0.00 0.00 4.46
3020 3133 3.332187 TCCATCTAACATTTGTGGGACCA 59.668 43.478 0.00 0.00 0.00 4.02
3021 3134 3.696051 CCATCTAACATTTGTGGGACCAG 59.304 47.826 0.00 0.00 0.00 4.00
3022 3135 2.790433 TCTAACATTTGTGGGACCAGC 58.210 47.619 0.00 0.00 0.00 4.85
3023 3136 2.375174 TCTAACATTTGTGGGACCAGCT 59.625 45.455 0.00 0.00 0.00 4.24
3024 3137 2.086610 AACATTTGTGGGACCAGCTT 57.913 45.000 0.00 0.00 0.00 3.74
3025 3138 1.331214 ACATTTGTGGGACCAGCTTG 58.669 50.000 0.00 0.00 0.00 4.01
3026 3139 1.331214 CATTTGTGGGACCAGCTTGT 58.669 50.000 0.00 0.00 0.00 3.16
3027 3140 2.158534 ACATTTGTGGGACCAGCTTGTA 60.159 45.455 0.00 0.00 0.00 2.41
3028 3141 2.738587 TTTGTGGGACCAGCTTGTAA 57.261 45.000 0.00 0.00 0.00 2.41
3029 3142 2.969821 TTGTGGGACCAGCTTGTAAT 57.030 45.000 0.00 0.00 0.00 1.89
3030 3143 2.198827 TGTGGGACCAGCTTGTAATG 57.801 50.000 0.00 0.00 0.00 1.90
3031 3144 1.271871 TGTGGGACCAGCTTGTAATGG 60.272 52.381 0.00 0.00 42.60 3.16
3044 3157 9.868277 CCAGCTTGTAATGGTTTTGATTAATAA 57.132 29.630 0.00 0.00 0.00 1.40
3075 3188 7.562454 AGCTAAAAATAATTACGGCTAAGCA 57.438 32.000 0.00 0.00 0.00 3.91
3076 3189 7.992008 AGCTAAAAATAATTACGGCTAAGCAA 58.008 30.769 0.00 0.00 0.00 3.91
3077 3190 8.463607 AGCTAAAAATAATTACGGCTAAGCAAA 58.536 29.630 0.00 0.00 0.00 3.68
3078 3191 9.078753 GCTAAAAATAATTACGGCTAAGCAAAA 57.921 29.630 0.00 0.00 0.00 2.44
3081 3194 9.483916 AAAAATAATTACGGCTAAGCAAAACTT 57.516 25.926 0.00 0.00 42.76 2.66
3086 3199 8.874744 AATTACGGCTAAGCAAAACTTAAAAA 57.125 26.923 0.00 0.00 40.36 1.94
3087 3200 7.917720 TTACGGCTAAGCAAAACTTAAAAAG 57.082 32.000 0.00 0.00 40.36 2.27
3088 3201 5.286438 ACGGCTAAGCAAAACTTAAAAAGG 58.714 37.500 0.00 0.00 40.36 3.11
3089 3202 5.068067 ACGGCTAAGCAAAACTTAAAAAGGA 59.932 36.000 0.00 0.00 40.36 3.36
3090 3203 5.980715 CGGCTAAGCAAAACTTAAAAAGGAA 59.019 36.000 0.00 0.00 40.36 3.36
3091 3204 6.143919 CGGCTAAGCAAAACTTAAAAAGGAAG 59.856 38.462 0.00 0.00 40.36 3.46
3092 3205 7.207383 GGCTAAGCAAAACTTAAAAAGGAAGA 58.793 34.615 0.00 0.00 40.36 2.87
3093 3206 7.382488 GGCTAAGCAAAACTTAAAAAGGAAGAG 59.618 37.037 0.00 0.00 40.36 2.85
3094 3207 8.135529 GCTAAGCAAAACTTAAAAAGGAAGAGA 58.864 33.333 0.00 0.00 40.36 3.10
3097 3210 8.932945 AGCAAAACTTAAAAAGGAAGAGAAAG 57.067 30.769 0.00 0.00 0.00 2.62
3098 3211 7.492669 AGCAAAACTTAAAAAGGAAGAGAAAGC 59.507 33.333 0.00 0.00 0.00 3.51
3099 3212 7.277760 GCAAAACTTAAAAAGGAAGAGAAAGCA 59.722 33.333 0.00 0.00 0.00 3.91
3100 3213 8.595533 CAAAACTTAAAAAGGAAGAGAAAGCAC 58.404 33.333 0.00 0.00 0.00 4.40
3101 3214 7.404671 AACTTAAAAAGGAAGAGAAAGCACA 57.595 32.000 0.00 0.00 0.00 4.57
3102 3215 6.796426 ACTTAAAAAGGAAGAGAAAGCACAC 58.204 36.000 0.00 0.00 0.00 3.82
3103 3216 3.971032 AAAAGGAAGAGAAAGCACACG 57.029 42.857 0.00 0.00 0.00 4.49
3104 3217 1.230324 AAGGAAGAGAAAGCACACGC 58.770 50.000 0.00 0.00 38.99 5.34
3105 3218 0.946221 AGGAAGAGAAAGCACACGCG 60.946 55.000 3.53 3.53 45.49 6.01
3106 3219 0.944311 GGAAGAGAAAGCACACGCGA 60.944 55.000 15.93 0.00 45.49 5.87
3107 3220 0.859232 GAAGAGAAAGCACACGCGAA 59.141 50.000 15.93 0.00 45.49 4.70
3108 3221 0.582005 AAGAGAAAGCACACGCGAAC 59.418 50.000 15.93 0.00 45.49 3.95
3109 3222 0.249489 AGAGAAAGCACACGCGAACT 60.249 50.000 15.93 0.28 45.49 3.01
3110 3223 0.111089 GAGAAAGCACACGCGAACTG 60.111 55.000 15.93 2.56 45.49 3.16
3111 3224 0.810031 AGAAAGCACACGCGAACTGT 60.810 50.000 15.93 3.40 45.49 3.55
3112 3225 0.027586 GAAAGCACACGCGAACTGTT 59.972 50.000 15.93 0.00 45.49 3.16
3113 3226 0.248054 AAAGCACACGCGAACTGTTG 60.248 50.000 15.93 0.68 45.49 3.33
3114 3227 1.087202 AAGCACACGCGAACTGTTGA 61.087 50.000 15.93 0.00 45.49 3.18
3115 3228 0.880278 AGCACACGCGAACTGTTGAT 60.880 50.000 15.93 0.00 45.49 2.57
3116 3229 0.722469 GCACACGCGAACTGTTGATG 60.722 55.000 15.93 0.00 0.00 3.07
3117 3230 0.581529 CACACGCGAACTGTTGATGT 59.418 50.000 15.93 0.00 0.00 3.06
3118 3231 0.581529 ACACGCGAACTGTTGATGTG 59.418 50.000 15.93 5.97 0.00 3.21
3119 3232 0.858583 CACGCGAACTGTTGATGTGA 59.141 50.000 15.93 0.00 0.00 3.58
3120 3233 1.136529 CACGCGAACTGTTGATGTGAG 60.137 52.381 15.93 0.00 0.00 3.51
3121 3234 1.139989 CGCGAACTGTTGATGTGAGT 58.860 50.000 0.00 0.00 0.00 3.41
3122 3235 1.125021 CGCGAACTGTTGATGTGAGTC 59.875 52.381 0.00 0.00 0.00 3.36
3123 3236 1.461127 GCGAACTGTTGATGTGAGTCC 59.539 52.381 0.00 0.00 0.00 3.85
3124 3237 2.754472 CGAACTGTTGATGTGAGTCCA 58.246 47.619 0.00 0.00 0.00 4.02
3125 3238 3.130633 CGAACTGTTGATGTGAGTCCAA 58.869 45.455 0.00 0.00 0.00 3.53
3126 3239 3.059597 CGAACTGTTGATGTGAGTCCAAC 60.060 47.826 0.00 0.00 40.22 3.77
3127 3240 3.845781 ACTGTTGATGTGAGTCCAACT 57.154 42.857 10.19 0.00 40.40 3.16
3128 3241 3.470709 ACTGTTGATGTGAGTCCAACTG 58.529 45.455 12.22 12.22 41.96 3.16
3129 3242 2.221169 TGTTGATGTGAGTCCAACTGC 58.779 47.619 10.19 0.00 40.40 4.40
3130 3243 2.221169 GTTGATGTGAGTCCAACTGCA 58.779 47.619 0.00 0.00 37.69 4.41
3131 3244 2.174363 TGATGTGAGTCCAACTGCAG 57.826 50.000 13.48 13.48 0.00 4.41
3132 3245 1.693606 TGATGTGAGTCCAACTGCAGA 59.306 47.619 23.35 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 4.209538 AGCTACTTGCCATGATATTTGCA 58.790 39.130 0.00 0.00 44.23 4.08
337 338 5.941555 AATCTTCTCCTGTTCGTCCTTAT 57.058 39.130 0.00 0.00 0.00 1.73
360 388 4.042884 TCATCATTCTCCTTCACCTCCAT 58.957 43.478 0.00 0.00 0.00 3.41
392 447 1.078823 TCATCCACCTCCACTACCAGT 59.921 52.381 0.00 0.00 0.00 4.00
413 468 5.720162 TCCTCCTCCTCATCATCATTCTTA 58.280 41.667 0.00 0.00 0.00 2.10
429 484 1.227497 CATGCTTCCGCTCCTCCTC 60.227 63.158 0.00 0.00 36.97 3.71
430 485 1.267574 TTCATGCTTCCGCTCCTCCT 61.268 55.000 0.00 0.00 36.97 3.69
431 486 0.392998 TTTCATGCTTCCGCTCCTCC 60.393 55.000 0.00 0.00 36.97 4.30
472 527 4.459330 CTCCATGATTTCCTCCTCCTTTC 58.541 47.826 0.00 0.00 0.00 2.62
485 540 3.201708 CCTTCTCCTTCACCTCCATGATT 59.798 47.826 0.00 0.00 0.00 2.57
509 564 6.156429 CCTCCTCCTCATTATCATCATCATCA 59.844 42.308 0.00 0.00 0.00 3.07
522 577 2.117865 CTTCTGCTCCTCCTCCTCATT 58.882 52.381 0.00 0.00 0.00 2.57
698 756 1.841277 ACTGTAATATGGCCCCGTTCA 59.159 47.619 0.00 0.00 0.00 3.18
818 876 2.207229 GGCCCCAAAGAAACGCCTT 61.207 57.895 0.00 0.00 36.65 4.35
980 1038 4.202080 CCATGTGCACTGAATAAGGAATGG 60.202 45.833 19.41 13.97 0.00 3.16
1384 1493 7.042335 AGTATAGGAATGAAAGGACTGAAACG 58.958 38.462 0.00 0.00 0.00 3.60
1529 1638 2.071540 CGCAATGATGATACTCCGCAT 58.928 47.619 0.00 0.00 0.00 4.73
1564 1673 5.857471 TGCCCATAATGGAATTTCTTCAG 57.143 39.130 0.00 0.00 40.96 3.02
1817 1929 2.467673 GTCTTTGCGCAACAAGTTTAGC 59.532 45.455 24.99 8.18 40.06 3.09
1906 2018 1.368203 TCTTCCCTAACCAGATCCCCA 59.632 52.381 0.00 0.00 0.00 4.96
1964 2076 1.193323 CAGTCCAGAGATCTGCCAGT 58.807 55.000 0.00 0.00 42.47 4.00
1974 2086 8.899427 ATGTACAATATCATTTCAGTCCAGAG 57.101 34.615 0.00 0.00 0.00 3.35
1998 2110 1.417517 TGCATTGTCCGATGGAGCTAT 59.582 47.619 0.00 0.00 29.39 2.97
1999 2111 0.829990 TGCATTGTCCGATGGAGCTA 59.170 50.000 0.00 0.00 29.39 3.32
2057 2169 1.070786 CGCCCACAGGTGTGTTAGT 59.929 57.895 9.22 0.00 44.21 2.24
2125 2237 3.120269 GCTGAACTTTGCTCATCAGTCAG 60.120 47.826 0.00 0.00 41.03 3.51
2127 2239 2.810274 TGCTGAACTTTGCTCATCAGTC 59.190 45.455 0.00 0.00 41.03 3.51
2128 2240 2.551459 GTGCTGAACTTTGCTCATCAGT 59.449 45.455 0.00 0.00 41.03 3.41
2129 2241 2.095364 GGTGCTGAACTTTGCTCATCAG 60.095 50.000 0.00 0.00 41.69 2.90
2130 2242 1.881973 GGTGCTGAACTTTGCTCATCA 59.118 47.619 0.00 0.00 0.00 3.07
2131 2243 2.157738 AGGTGCTGAACTTTGCTCATC 58.842 47.619 0.00 0.00 0.00 2.92
2132 2244 2.157738 GAGGTGCTGAACTTTGCTCAT 58.842 47.619 0.00 0.00 0.00 2.90
2133 2245 1.597742 GAGGTGCTGAACTTTGCTCA 58.402 50.000 0.00 0.00 0.00 4.26
2134 2246 0.514691 CGAGGTGCTGAACTTTGCTC 59.485 55.000 0.00 0.00 0.00 4.26
2137 2249 1.205064 CGCGAGGTGCTGAACTTTG 59.795 57.895 0.00 0.00 43.27 2.77
2139 2251 0.946221 CTTCGCGAGGTGCTGAACTT 60.946 55.000 9.59 0.00 43.27 2.66
2140 2252 1.373497 CTTCGCGAGGTGCTGAACT 60.373 57.895 9.59 0.00 43.27 3.01
2141 2253 3.016474 GCTTCGCGAGGTGCTGAAC 62.016 63.158 19.98 0.00 43.27 3.18
2144 2256 3.043713 TTGCTTCGCGAGGTGCTG 61.044 61.111 19.98 3.84 43.27 4.41
2145 2257 3.044305 GTTGCTTCGCGAGGTGCT 61.044 61.111 19.98 0.00 43.27 4.40
2181 2293 2.907910 GCTGATCATTTCTGCACGTT 57.092 45.000 0.00 0.00 45.73 3.99
2247 2359 1.787012 TTTCTACCTCCGTTTGTCGC 58.213 50.000 0.00 0.00 38.35 5.19
2250 2362 4.315803 CAGTCATTTCTACCTCCGTTTGT 58.684 43.478 0.00 0.00 0.00 2.83
2284 2396 7.658167 TGAAACTTCAGAAATACCAATACGACA 59.342 33.333 0.00 0.00 32.50 4.35
2294 2406 6.374578 GTGGAGCTTGAAACTTCAGAAATAC 58.625 40.000 0.00 0.00 38.61 1.89
2326 2438 3.261897 ACCTCACACTTATTCAGTCAGGG 59.738 47.826 0.00 0.00 30.92 4.45
2332 2444 5.866633 GTGAAGAGACCTCACACTTATTCAG 59.133 44.000 14.92 0.00 36.76 3.02
2358 2470 7.633789 ACTCTCACAATTTTATACCACCAGAT 58.366 34.615 0.00 0.00 0.00 2.90
2361 2473 7.227873 TGAACTCTCACAATTTTATACCACCA 58.772 34.615 0.00 0.00 0.00 4.17
2410 2522 2.880443 ACAACTGGAGGCATCAAACAT 58.120 42.857 0.00 0.00 0.00 2.71
2451 2563 8.340618 AGCAACACAAATCAACTATATTGACT 57.659 30.769 0.00 0.00 0.00 3.41
2452 2564 8.970691 AAGCAACACAAATCAACTATATTGAC 57.029 30.769 0.00 0.00 0.00 3.18
2453 2565 8.243426 GGAAGCAACACAAATCAACTATATTGA 58.757 33.333 0.00 0.00 0.00 2.57
2454 2566 8.028354 TGGAAGCAACACAAATCAACTATATTG 58.972 33.333 0.00 0.00 0.00 1.90
2455 2567 8.121305 TGGAAGCAACACAAATCAACTATATT 57.879 30.769 0.00 0.00 0.00 1.28
2456 2568 7.394359 ACTGGAAGCAACACAAATCAACTATAT 59.606 33.333 0.00 0.00 37.60 0.86
2457 2569 6.714810 ACTGGAAGCAACACAAATCAACTATA 59.285 34.615 0.00 0.00 37.60 1.31
2458 2570 5.536161 ACTGGAAGCAACACAAATCAACTAT 59.464 36.000 0.00 0.00 37.60 2.12
2459 2571 4.887071 ACTGGAAGCAACACAAATCAACTA 59.113 37.500 0.00 0.00 37.60 2.24
2517 2629 3.064545 GCCATCTTCTTGAGTGGAAATCG 59.935 47.826 0.00 0.00 30.38 3.34
2539 2651 9.773328 CAACCATATTACACTAACAAATCACAG 57.227 33.333 0.00 0.00 0.00 3.66
2555 2667 8.902540 ATTGACTAGAAATCGCAACCATATTA 57.097 30.769 0.00 0.00 0.00 0.98
2556 2668 7.807977 ATTGACTAGAAATCGCAACCATATT 57.192 32.000 0.00 0.00 0.00 1.28
2559 2671 6.992123 TGATATTGACTAGAAATCGCAACCAT 59.008 34.615 0.00 0.00 0.00 3.55
2560 2672 6.345298 TGATATTGACTAGAAATCGCAACCA 58.655 36.000 0.00 0.00 0.00 3.67
2561 2673 6.564873 GCTGATATTGACTAGAAATCGCAACC 60.565 42.308 0.00 0.00 0.00 3.77
2562 2674 6.018751 TGCTGATATTGACTAGAAATCGCAAC 60.019 38.462 0.00 0.00 0.00 4.17
2563 2675 6.048509 TGCTGATATTGACTAGAAATCGCAA 58.951 36.000 0.00 0.00 0.00 4.85
2564 2676 5.600696 TGCTGATATTGACTAGAAATCGCA 58.399 37.500 0.00 4.06 0.00 5.10
2565 2677 6.718454 ATGCTGATATTGACTAGAAATCGC 57.282 37.500 0.00 1.85 0.00 4.58
2613 2725 7.893302 ACCCAATGTTTCCTGAAAATCATAGTA 59.107 33.333 0.00 0.00 31.33 1.82
2659 2771 2.137523 GTGTTGCCCTGCATTTTCTTG 58.862 47.619 0.00 0.00 38.76 3.02
2686 2798 9.023962 GGATCAACTTATAATAAATGCATGGGA 57.976 33.333 0.00 0.00 0.00 4.37
2694 2806 9.082313 CTGGGCAAGGATCAACTTATAATAAAT 57.918 33.333 0.00 0.00 0.00 1.40
2750 2863 0.478072 ACTTGGACCAATGCCACAGA 59.522 50.000 7.54 0.00 34.56 3.41
2756 2869 1.737793 CTCGGTAACTTGGACCAATGC 59.262 52.381 7.54 0.00 36.72 3.56
2757 2870 1.737793 GCTCGGTAACTTGGACCAATG 59.262 52.381 7.54 4.83 36.72 2.82
2758 2871 1.349688 TGCTCGGTAACTTGGACCAAT 59.650 47.619 7.54 0.00 36.72 3.16
2762 2875 0.320697 AGGTGCTCGGTAACTTGGAC 59.679 55.000 0.00 0.00 0.00 4.02
2770 2883 0.395311 ATTCGAGGAGGTGCTCGGTA 60.395 55.000 19.10 9.45 42.61 4.02
2771 2884 1.682684 ATTCGAGGAGGTGCTCGGT 60.683 57.895 19.10 7.34 42.61 4.69
2772 2885 1.227089 CATTCGAGGAGGTGCTCGG 60.227 63.158 19.10 1.69 42.61 4.63
2773 2886 0.248825 CTCATTCGAGGAGGTGCTCG 60.249 60.000 14.10 14.10 43.59 5.03
2774 2887 1.066908 CTCTCATTCGAGGAGGTGCTC 59.933 57.143 14.04 0.00 39.95 4.26
2775 2888 1.110442 CTCTCATTCGAGGAGGTGCT 58.890 55.000 14.04 0.00 39.95 4.40
2776 2889 1.107114 TCTCTCATTCGAGGAGGTGC 58.893 55.000 14.04 0.00 39.95 5.01
2777 2890 3.131933 ACATTCTCTCATTCGAGGAGGTG 59.868 47.826 14.04 10.88 39.95 4.00
2778 2891 3.131933 CACATTCTCTCATTCGAGGAGGT 59.868 47.826 14.04 3.73 39.95 3.85
2779 2892 3.382865 TCACATTCTCTCATTCGAGGAGG 59.617 47.826 14.04 7.12 39.95 4.30
2780 2893 4.645762 TCACATTCTCTCATTCGAGGAG 57.354 45.455 9.27 9.27 39.95 3.69
2781 2894 4.738839 GCATCACATTCTCTCATTCGAGGA 60.739 45.833 0.00 0.00 39.95 3.71
2782 2895 3.493877 GCATCACATTCTCTCATTCGAGG 59.506 47.826 0.00 0.00 39.95 4.63
2783 2896 3.493877 GGCATCACATTCTCTCATTCGAG 59.506 47.826 0.00 0.00 40.98 4.04
2784 2897 3.461061 GGCATCACATTCTCTCATTCGA 58.539 45.455 0.00 0.00 0.00 3.71
2785 2898 2.547211 GGGCATCACATTCTCTCATTCG 59.453 50.000 0.00 0.00 0.00 3.34
2786 2899 3.564644 CAGGGCATCACATTCTCTCATTC 59.435 47.826 0.00 0.00 0.00 2.67
2787 2900 3.053842 ACAGGGCATCACATTCTCTCATT 60.054 43.478 0.00 0.00 0.00 2.57
2788 2901 2.508716 ACAGGGCATCACATTCTCTCAT 59.491 45.455 0.00 0.00 0.00 2.90
2789 2902 1.911357 ACAGGGCATCACATTCTCTCA 59.089 47.619 0.00 0.00 0.00 3.27
2790 2903 2.286872 CACAGGGCATCACATTCTCTC 58.713 52.381 0.00 0.00 0.00 3.20
2791 2904 1.064906 CCACAGGGCATCACATTCTCT 60.065 52.381 0.00 0.00 0.00 3.10
2792 2905 1.340405 ACCACAGGGCATCACATTCTC 60.340 52.381 0.00 0.00 37.90 2.87
2793 2906 0.700564 ACCACAGGGCATCACATTCT 59.299 50.000 0.00 0.00 37.90 2.40
2794 2907 1.098050 GACCACAGGGCATCACATTC 58.902 55.000 0.00 0.00 37.90 2.67
2795 2908 0.700564 AGACCACAGGGCATCACATT 59.299 50.000 0.00 0.00 37.90 2.71
2796 2909 0.700564 AAGACCACAGGGCATCACAT 59.299 50.000 0.00 0.00 37.90 3.21
2797 2910 0.250858 CAAGACCACAGGGCATCACA 60.251 55.000 0.00 0.00 37.90 3.58
2798 2911 0.250901 ACAAGACCACAGGGCATCAC 60.251 55.000 0.00 0.00 37.90 3.06
2799 2912 0.478072 AACAAGACCACAGGGCATCA 59.522 50.000 0.00 0.00 37.90 3.07
2800 2913 2.489938 TAACAAGACCACAGGGCATC 57.510 50.000 0.00 0.00 37.90 3.91
2801 2914 2.621407 CCATAACAAGACCACAGGGCAT 60.621 50.000 0.00 0.00 37.90 4.40
2802 2915 1.271871 CCATAACAAGACCACAGGGCA 60.272 52.381 0.00 0.00 37.90 5.36
2803 2916 1.271926 ACCATAACAAGACCACAGGGC 60.272 52.381 0.00 0.00 37.90 5.19
2804 2917 2.305927 AGACCATAACAAGACCACAGGG 59.694 50.000 0.00 0.00 41.29 4.45
2805 2918 3.703001 AGACCATAACAAGACCACAGG 57.297 47.619 0.00 0.00 0.00 4.00
2806 2919 4.214119 CACAAGACCATAACAAGACCACAG 59.786 45.833 0.00 0.00 0.00 3.66
2807 2920 4.133820 CACAAGACCATAACAAGACCACA 58.866 43.478 0.00 0.00 0.00 4.17
2808 2921 4.385825 TCACAAGACCATAACAAGACCAC 58.614 43.478 0.00 0.00 0.00 4.16
2809 2922 4.698201 TCACAAGACCATAACAAGACCA 57.302 40.909 0.00 0.00 0.00 4.02
2810 2923 4.083271 GCTTCACAAGACCATAACAAGACC 60.083 45.833 0.00 0.00 0.00 3.85
2811 2924 4.757149 AGCTTCACAAGACCATAACAAGAC 59.243 41.667 0.00 0.00 0.00 3.01
2812 2925 4.756642 CAGCTTCACAAGACCATAACAAGA 59.243 41.667 0.00 0.00 0.00 3.02
2813 2926 4.614535 GCAGCTTCACAAGACCATAACAAG 60.615 45.833 0.00 0.00 0.00 3.16
2814 2927 3.253188 GCAGCTTCACAAGACCATAACAA 59.747 43.478 0.00 0.00 0.00 2.83
2815 2928 2.813754 GCAGCTTCACAAGACCATAACA 59.186 45.455 0.00 0.00 0.00 2.41
2816 2929 2.162408 GGCAGCTTCACAAGACCATAAC 59.838 50.000 0.00 0.00 0.00 1.89
2817 2930 2.224744 TGGCAGCTTCACAAGACCATAA 60.225 45.455 0.00 0.00 0.00 1.90
2818 2931 1.350684 TGGCAGCTTCACAAGACCATA 59.649 47.619 0.00 0.00 0.00 2.74
2819 2932 0.111061 TGGCAGCTTCACAAGACCAT 59.889 50.000 0.00 0.00 0.00 3.55
2820 2933 0.819259 GTGGCAGCTTCACAAGACCA 60.819 55.000 11.00 0.00 35.39 4.02
2821 2934 1.518903 GGTGGCAGCTTCACAAGACC 61.519 60.000 9.90 0.00 36.90 3.85
2822 2935 0.536006 AGGTGGCAGCTTCACAAGAC 60.536 55.000 14.51 2.38 36.90 3.01
2823 2936 1.055849 TAGGTGGCAGCTTCACAAGA 58.944 50.000 25.69 1.16 36.90 3.02
2824 2937 1.741706 CATAGGTGGCAGCTTCACAAG 59.258 52.381 25.69 0.00 36.90 3.16
2825 2938 1.825090 CATAGGTGGCAGCTTCACAA 58.175 50.000 25.69 6.54 36.90 3.33
2826 2939 0.677731 GCATAGGTGGCAGCTTCACA 60.678 55.000 25.69 6.96 36.90 3.58
2827 2940 0.677731 TGCATAGGTGGCAGCTTCAC 60.678 55.000 25.69 14.17 36.11 3.18
2828 2941 0.038021 TTGCATAGGTGGCAGCTTCA 59.962 50.000 25.69 16.68 43.05 3.02
2829 2942 0.453390 GTTGCATAGGTGGCAGCTTC 59.547 55.000 25.69 14.35 43.05 3.86
2830 2943 0.251297 TGTTGCATAGGTGGCAGCTT 60.251 50.000 25.69 9.88 43.05 3.74
2831 2944 0.033796 ATGTTGCATAGGTGGCAGCT 60.034 50.000 23.98 23.98 43.05 4.24
2832 2945 0.819582 AATGTTGCATAGGTGGCAGC 59.180 50.000 9.02 9.02 43.05 5.25
2833 2946 2.093890 TCAATGTTGCATAGGTGGCAG 58.906 47.619 0.00 0.00 43.05 4.85
2834 2947 2.212812 TCAATGTTGCATAGGTGGCA 57.787 45.000 0.00 0.00 40.00 4.92
2835 2948 3.591196 TTTCAATGTTGCATAGGTGGC 57.409 42.857 0.00 0.00 0.00 5.01
2836 2949 5.577945 GTCAATTTCAATGTTGCATAGGTGG 59.422 40.000 0.00 0.00 0.00 4.61
2837 2950 6.157904 TGTCAATTTCAATGTTGCATAGGTG 58.842 36.000 0.00 0.00 0.00 4.00
2838 2951 6.343716 TGTCAATTTCAATGTTGCATAGGT 57.656 33.333 0.00 0.00 0.00 3.08
2839 2952 7.546316 TCATTGTCAATTTCAATGTTGCATAGG 59.454 33.333 21.93 4.97 46.76 2.57
2840 2953 8.377681 GTCATTGTCAATTTCAATGTTGCATAG 58.622 33.333 21.93 5.44 46.76 2.23
2841 2954 8.089597 AGTCATTGTCAATTTCAATGTTGCATA 58.910 29.630 21.93 8.35 46.76 3.14
2842 2955 6.932400 AGTCATTGTCAATTTCAATGTTGCAT 59.068 30.769 21.93 10.04 46.76 3.96
2843 2956 6.282167 AGTCATTGTCAATTTCAATGTTGCA 58.718 32.000 21.93 9.07 46.76 4.08
2844 2957 6.774354 AGTCATTGTCAATTTCAATGTTGC 57.226 33.333 21.93 16.38 46.76 4.17
2856 2969 9.679661 ACCACATGTATAATTAGTCATTGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
2857 2970 9.108284 CACCACATGTATAATTAGTCATTGTCA 57.892 33.333 0.00 0.00 0.00 3.58
2858 2971 9.109393 ACACCACATGTATAATTAGTCATTGTC 57.891 33.333 0.00 0.00 40.88 3.18
2859 2972 8.892723 CACACCACATGTATAATTAGTCATTGT 58.107 33.333 0.00 0.00 40.64 2.71
2860 2973 7.857389 GCACACCACATGTATAATTAGTCATTG 59.143 37.037 0.00 0.00 40.64 2.82
2861 2974 7.555914 TGCACACCACATGTATAATTAGTCATT 59.444 33.333 0.00 0.00 40.64 2.57
2862 2975 7.012327 GTGCACACCACATGTATAATTAGTCAT 59.988 37.037 13.17 0.00 44.06 3.06
2863 2976 6.315144 GTGCACACCACATGTATAATTAGTCA 59.685 38.462 13.17 0.00 44.06 3.41
2864 2977 6.715464 GTGCACACCACATGTATAATTAGTC 58.285 40.000 13.17 0.00 44.06 2.59
2865 2978 6.677781 GTGCACACCACATGTATAATTAGT 57.322 37.500 13.17 0.00 44.06 2.24
2878 2991 3.857010 GCCAATTTAGAAGTGCACACCAC 60.857 47.826 21.04 7.03 45.01 4.16
2879 2992 2.295909 GCCAATTTAGAAGTGCACACCA 59.704 45.455 21.04 0.00 0.00 4.17
2880 2993 2.558359 AGCCAATTTAGAAGTGCACACC 59.442 45.455 21.04 10.04 0.00 4.16
2881 2994 3.253188 TCAGCCAATTTAGAAGTGCACAC 59.747 43.478 21.04 12.64 0.00 3.82
2882 2995 3.485394 TCAGCCAATTTAGAAGTGCACA 58.515 40.909 21.04 0.00 0.00 4.57
2883 2996 4.022849 AGTTCAGCCAATTTAGAAGTGCAC 60.023 41.667 9.40 9.40 0.00 4.57
2884 2997 4.144297 AGTTCAGCCAATTTAGAAGTGCA 58.856 39.130 0.00 0.00 0.00 4.57
2885 2998 4.457257 AGAGTTCAGCCAATTTAGAAGTGC 59.543 41.667 0.00 0.00 0.00 4.40
2886 2999 6.566197 AAGAGTTCAGCCAATTTAGAAGTG 57.434 37.500 0.00 0.00 0.00 3.16
2887 3000 8.870075 ATAAAGAGTTCAGCCAATTTAGAAGT 57.130 30.769 0.00 0.00 0.00 3.01
2894 3007 9.154847 GCAAAAATATAAAGAGTTCAGCCAATT 57.845 29.630 0.00 0.00 0.00 2.32
2895 3008 8.313292 TGCAAAAATATAAAGAGTTCAGCCAAT 58.687 29.630 0.00 0.00 0.00 3.16
2896 3009 7.665690 TGCAAAAATATAAAGAGTTCAGCCAA 58.334 30.769 0.00 0.00 0.00 4.52
2897 3010 7.225784 TGCAAAAATATAAAGAGTTCAGCCA 57.774 32.000 0.00 0.00 0.00 4.75
2898 3011 9.801873 TTATGCAAAAATATAAAGAGTTCAGCC 57.198 29.630 0.00 0.00 0.00 4.85
2948 3061 8.402472 CGTGAGAATTTCTAGAGTCTAGTCAAT 58.598 37.037 23.51 19.14 0.00 2.57
2949 3062 7.390996 ACGTGAGAATTTCTAGAGTCTAGTCAA 59.609 37.037 23.51 18.00 0.00 3.18
2950 3063 6.879993 ACGTGAGAATTTCTAGAGTCTAGTCA 59.120 38.462 23.51 16.50 0.00 3.41
2951 3064 7.064847 TGACGTGAGAATTTCTAGAGTCTAGTC 59.935 40.741 23.51 15.01 30.01 2.59
2952 3065 6.879993 TGACGTGAGAATTTCTAGAGTCTAGT 59.120 38.462 23.51 7.33 30.01 2.57
2953 3066 7.310072 TGACGTGAGAATTTCTAGAGTCTAG 57.690 40.000 19.55 19.55 30.01 2.43
2954 3067 7.683437 TTGACGTGAGAATTTCTAGAGTCTA 57.317 36.000 19.34 0.00 30.01 2.59
2955 3068 6.576662 TTGACGTGAGAATTTCTAGAGTCT 57.423 37.500 19.34 0.00 30.01 3.24
2956 3069 7.030165 TGATTGACGTGAGAATTTCTAGAGTC 58.970 38.462 15.16 15.16 0.00 3.36
2957 3070 6.925211 TGATTGACGTGAGAATTTCTAGAGT 58.075 36.000 0.00 0.00 0.00 3.24
2958 3071 7.254137 TCTGATTGACGTGAGAATTTCTAGAG 58.746 38.462 0.00 0.00 0.00 2.43
2959 3072 7.121315 TCTCTGATTGACGTGAGAATTTCTAGA 59.879 37.037 0.00 0.00 33.30 2.43
2960 3073 7.254137 TCTCTGATTGACGTGAGAATTTCTAG 58.746 38.462 0.00 0.00 33.30 2.43
2961 3074 7.158099 TCTCTGATTGACGTGAGAATTTCTA 57.842 36.000 0.00 0.00 33.30 2.10
2962 3075 6.030548 TCTCTGATTGACGTGAGAATTTCT 57.969 37.500 0.00 0.00 33.30 2.52
2963 3076 6.712241 TTCTCTGATTGACGTGAGAATTTC 57.288 37.500 9.07 0.00 39.64 2.17
2964 3077 7.496529 TTTTCTCTGATTGACGTGAGAATTT 57.503 32.000 12.77 0.00 42.66 1.82
2965 3078 7.678947 ATTTTCTCTGATTGACGTGAGAATT 57.321 32.000 12.77 3.91 42.66 2.17
2966 3079 8.777865 TTATTTTCTCTGATTGACGTGAGAAT 57.222 30.769 12.77 4.28 42.66 2.40
2967 3080 8.601845 TTTATTTTCTCTGATTGACGTGAGAA 57.398 30.769 9.07 9.07 41.83 2.87
2968 3081 8.777865 ATTTATTTTCTCTGATTGACGTGAGA 57.222 30.769 0.00 0.00 34.25 3.27
2992 3105 9.520515 GTCCCACAAATGTTAGATGGATATAAT 57.479 33.333 0.00 0.00 31.69 1.28
2993 3106 7.942341 GGTCCCACAAATGTTAGATGGATATAA 59.058 37.037 0.00 0.00 31.69 0.98
2994 3107 7.073088 TGGTCCCACAAATGTTAGATGGATATA 59.927 37.037 0.00 0.00 31.69 0.86
2995 3108 6.126215 TGGTCCCACAAATGTTAGATGGATAT 60.126 38.462 0.00 0.00 31.69 1.63
2996 3109 5.192722 TGGTCCCACAAATGTTAGATGGATA 59.807 40.000 0.00 0.00 31.69 2.59
2997 3110 4.017591 TGGTCCCACAAATGTTAGATGGAT 60.018 41.667 0.00 0.00 31.69 3.41
2998 3111 3.332187 TGGTCCCACAAATGTTAGATGGA 59.668 43.478 0.00 0.00 31.69 3.41
2999 3112 3.696045 TGGTCCCACAAATGTTAGATGG 58.304 45.455 0.00 0.00 0.00 3.51
3000 3113 3.129287 GCTGGTCCCACAAATGTTAGATG 59.871 47.826 0.00 0.00 0.00 2.90
3001 3114 3.010584 AGCTGGTCCCACAAATGTTAGAT 59.989 43.478 0.00 0.00 0.00 1.98
3002 3115 2.375174 AGCTGGTCCCACAAATGTTAGA 59.625 45.455 0.00 0.00 0.00 2.10
3003 3116 2.795329 AGCTGGTCCCACAAATGTTAG 58.205 47.619 0.00 0.00 0.00 2.34
3004 3117 2.890311 CAAGCTGGTCCCACAAATGTTA 59.110 45.455 0.00 0.00 0.00 2.41
3005 3118 1.688197 CAAGCTGGTCCCACAAATGTT 59.312 47.619 0.00 0.00 0.00 2.71
3006 3119 1.331214 CAAGCTGGTCCCACAAATGT 58.669 50.000 0.00 0.00 0.00 2.71
3007 3120 1.331214 ACAAGCTGGTCCCACAAATG 58.669 50.000 0.00 0.00 0.00 2.32
3008 3121 2.969821 TACAAGCTGGTCCCACAAAT 57.030 45.000 0.00 0.00 0.00 2.32
3009 3122 2.738587 TTACAAGCTGGTCCCACAAA 57.261 45.000 0.00 0.00 0.00 2.83
3010 3123 2.513753 CATTACAAGCTGGTCCCACAA 58.486 47.619 0.00 0.00 0.00 3.33
3011 3124 1.271871 CCATTACAAGCTGGTCCCACA 60.272 52.381 0.00 0.00 0.00 4.17
3012 3125 1.271926 ACCATTACAAGCTGGTCCCAC 60.272 52.381 0.00 0.00 42.04 4.61
3013 3126 1.072266 ACCATTACAAGCTGGTCCCA 58.928 50.000 0.00 0.00 42.04 4.37
3014 3127 2.215942 AACCATTACAAGCTGGTCCC 57.784 50.000 0.00 0.00 44.97 4.46
3015 3128 3.572255 TCAAAACCATTACAAGCTGGTCC 59.428 43.478 0.00 0.00 44.97 4.46
3016 3129 4.846779 TCAAAACCATTACAAGCTGGTC 57.153 40.909 0.00 0.00 44.97 4.02
3018 3131 9.868277 TTATTAATCAAAACCATTACAAGCTGG 57.132 29.630 0.00 0.00 38.55 4.85
3049 3162 9.111613 TGCTTAGCCGTAATTATTTTTAGCTAA 57.888 29.630 0.86 0.86 38.77 3.09
3050 3163 8.665643 TGCTTAGCCGTAATTATTTTTAGCTA 57.334 30.769 0.29 0.00 0.00 3.32
3051 3164 7.562454 TGCTTAGCCGTAATTATTTTTAGCT 57.438 32.000 0.29 0.00 0.00 3.32
3052 3165 8.623310 TTTGCTTAGCCGTAATTATTTTTAGC 57.377 30.769 0.29 0.00 0.00 3.09
3055 3168 9.483916 AAGTTTTGCTTAGCCGTAATTATTTTT 57.516 25.926 0.29 0.00 35.27 1.94
3060 3173 9.962783 TTTTTAAGTTTTGCTTAGCCGTAATTA 57.037 25.926 0.29 0.00 40.41 1.40
3061 3174 8.874744 TTTTTAAGTTTTGCTTAGCCGTAATT 57.125 26.923 0.29 0.00 40.41 1.40
3062 3175 7.597369 CCTTTTTAAGTTTTGCTTAGCCGTAAT 59.403 33.333 0.29 0.00 40.41 1.89
3063 3176 6.919115 CCTTTTTAAGTTTTGCTTAGCCGTAA 59.081 34.615 0.29 0.00 40.41 3.18
3064 3177 6.262720 TCCTTTTTAAGTTTTGCTTAGCCGTA 59.737 34.615 0.29 0.00 40.41 4.02
3065 3178 5.068067 TCCTTTTTAAGTTTTGCTTAGCCGT 59.932 36.000 0.29 0.00 40.41 5.68
3066 3179 5.525199 TCCTTTTTAAGTTTTGCTTAGCCG 58.475 37.500 0.29 0.00 40.41 5.52
3067 3180 7.207383 TCTTCCTTTTTAAGTTTTGCTTAGCC 58.793 34.615 0.29 0.00 40.41 3.93
3068 3181 8.135529 TCTCTTCCTTTTTAAGTTTTGCTTAGC 58.864 33.333 0.00 0.00 40.41 3.09
3071 3184 9.371136 CTTTCTCTTCCTTTTTAAGTTTTGCTT 57.629 29.630 0.00 0.00 41.05 3.91
3072 3185 7.492669 GCTTTCTCTTCCTTTTTAAGTTTTGCT 59.507 33.333 0.00 0.00 0.00 3.91
3073 3186 7.277760 TGCTTTCTCTTCCTTTTTAAGTTTTGC 59.722 33.333 0.00 0.00 0.00 3.68
3074 3187 8.595533 GTGCTTTCTCTTCCTTTTTAAGTTTTG 58.404 33.333 0.00 0.00 0.00 2.44
3075 3188 8.311109 TGTGCTTTCTCTTCCTTTTTAAGTTTT 58.689 29.630 0.00 0.00 0.00 2.43
3076 3189 7.759886 GTGTGCTTTCTCTTCCTTTTTAAGTTT 59.240 33.333 0.00 0.00 0.00 2.66
3077 3190 7.258441 GTGTGCTTTCTCTTCCTTTTTAAGTT 58.742 34.615 0.00 0.00 0.00 2.66
3078 3191 6.458342 CGTGTGCTTTCTCTTCCTTTTTAAGT 60.458 38.462 0.00 0.00 0.00 2.24
3079 3192 5.909610 CGTGTGCTTTCTCTTCCTTTTTAAG 59.090 40.000 0.00 0.00 0.00 1.85
3080 3193 5.732247 GCGTGTGCTTTCTCTTCCTTTTTAA 60.732 40.000 0.00 0.00 38.39 1.52
3081 3194 4.261031 GCGTGTGCTTTCTCTTCCTTTTTA 60.261 41.667 0.00 0.00 38.39 1.52
3082 3195 3.489229 GCGTGTGCTTTCTCTTCCTTTTT 60.489 43.478 0.00 0.00 38.39 1.94
3083 3196 2.033424 GCGTGTGCTTTCTCTTCCTTTT 59.967 45.455 0.00 0.00 38.39 2.27
3084 3197 1.604278 GCGTGTGCTTTCTCTTCCTTT 59.396 47.619 0.00 0.00 38.39 3.11
3085 3198 1.230324 GCGTGTGCTTTCTCTTCCTT 58.770 50.000 0.00 0.00 38.39 3.36
3086 3199 0.946221 CGCGTGTGCTTTCTCTTCCT 60.946 55.000 0.00 0.00 39.65 3.36
3087 3200 0.944311 TCGCGTGTGCTTTCTCTTCC 60.944 55.000 5.77 0.00 39.65 3.46
3088 3201 0.859232 TTCGCGTGTGCTTTCTCTTC 59.141 50.000 5.77 0.00 39.65 2.87
3089 3202 0.582005 GTTCGCGTGTGCTTTCTCTT 59.418 50.000 5.77 0.00 39.65 2.85
3090 3203 0.249489 AGTTCGCGTGTGCTTTCTCT 60.249 50.000 5.77 0.00 39.65 3.10
3091 3204 0.111089 CAGTTCGCGTGTGCTTTCTC 60.111 55.000 5.77 0.00 39.65 2.87
3092 3205 0.810031 ACAGTTCGCGTGTGCTTTCT 60.810 50.000 5.77 0.00 39.65 2.52
3093 3206 0.027586 AACAGTTCGCGTGTGCTTTC 59.972 50.000 5.77 0.00 39.65 2.62
3094 3207 0.248054 CAACAGTTCGCGTGTGCTTT 60.248 50.000 5.77 0.00 39.65 3.51
3095 3208 1.087202 TCAACAGTTCGCGTGTGCTT 61.087 50.000 5.77 0.00 39.65 3.91
3096 3209 0.880278 ATCAACAGTTCGCGTGTGCT 60.880 50.000 5.77 0.00 39.65 4.40
3097 3210 0.722469 CATCAACAGTTCGCGTGTGC 60.722 55.000 5.77 0.00 37.91 4.57
3098 3211 0.581529 ACATCAACAGTTCGCGTGTG 59.418 50.000 5.77 4.69 0.00 3.82
3099 3212 0.581529 CACATCAACAGTTCGCGTGT 59.418 50.000 5.77 0.00 0.00 4.49
3100 3213 0.858583 TCACATCAACAGTTCGCGTG 59.141 50.000 5.77 0.00 0.00 5.34
3101 3214 1.139989 CTCACATCAACAGTTCGCGT 58.860 50.000 5.77 0.00 0.00 6.01
3102 3215 1.125021 GACTCACATCAACAGTTCGCG 59.875 52.381 0.00 0.00 0.00 5.87
3103 3216 1.461127 GGACTCACATCAACAGTTCGC 59.539 52.381 0.00 0.00 0.00 4.70
3104 3217 2.754472 TGGACTCACATCAACAGTTCG 58.246 47.619 0.00 0.00 0.00 3.95
3105 3218 4.024556 CAGTTGGACTCACATCAACAGTTC 60.025 45.833 0.00 0.00 42.08 3.01
3106 3219 3.879295 CAGTTGGACTCACATCAACAGTT 59.121 43.478 0.00 0.00 42.08 3.16
3107 3220 3.470709 CAGTTGGACTCACATCAACAGT 58.529 45.455 0.00 0.00 42.08 3.55
3108 3221 2.225019 GCAGTTGGACTCACATCAACAG 59.775 50.000 0.00 0.00 42.08 3.16
3109 3222 2.221169 GCAGTTGGACTCACATCAACA 58.779 47.619 0.00 0.00 42.08 3.33
3110 3223 2.221169 TGCAGTTGGACTCACATCAAC 58.779 47.619 0.00 0.00 40.52 3.18
3111 3224 2.104622 TCTGCAGTTGGACTCACATCAA 59.895 45.455 14.67 0.00 0.00 2.57
3112 3225 1.693606 TCTGCAGTTGGACTCACATCA 59.306 47.619 14.67 0.00 0.00 3.07
3113 3226 2.462456 TCTGCAGTTGGACTCACATC 57.538 50.000 14.67 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.