Multiple sequence alignment - TraesCS1B01G107800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G107800 chr1B 100.000 6034 0 0 1 6034 119882160 119888193 0.000000e+00 11143.0
1 TraesCS1B01G107800 chr1D 94.392 4012 172 20 1630 5607 76498835 76502827 0.000000e+00 6113.0
2 TraesCS1B01G107800 chr1D 95.019 522 18 3 1129 1648 76498303 76498818 0.000000e+00 813.0
3 TraesCS1B01G107800 chr1A 94.035 3705 171 20 1094 4779 77103748 77107421 0.000000e+00 5572.0
4 TraesCS1B01G107800 chr1A 89.616 1069 94 6 1 1066 557420222 557421276 0.000000e+00 1343.0
5 TraesCS1B01G107800 chr1A 94.256 679 32 5 4810 5485 77107420 77108094 0.000000e+00 1031.0
6 TraesCS1B01G107800 chr1A 94.382 89 4 1 5520 5607 77109254 77109342 1.050000e-27 135.0
7 TraesCS1B01G107800 chr6B 89.842 1073 104 5 1 1069 529704703 529703632 0.000000e+00 1373.0
8 TraesCS1B01G107800 chr6B 93.220 413 18 2 5630 6034 169171799 169171389 3.110000e-167 599.0
9 TraesCS1B01G107800 chr7A 89.804 1069 106 3 1 1066 493654794 493655862 0.000000e+00 1367.0
10 TraesCS1B01G107800 chr7A 82.979 235 32 5 5269 5498 706589698 706589467 7.930000e-49 206.0
11 TraesCS1B01G107800 chr2B 89.636 1071 106 4 1 1067 75524969 75526038 0.000000e+00 1358.0
12 TraesCS1B01G107800 chr2B 88.407 992 108 5 75 1064 800827165 800828151 0.000000e+00 1188.0
13 TraesCS1B01G107800 chr2B 86.486 1073 134 10 1 1066 45804780 45805848 0.000000e+00 1168.0
14 TraesCS1B01G107800 chr7B 88.920 1074 113 6 1 1070 136877036 136878107 0.000000e+00 1319.0
15 TraesCS1B01G107800 chr5A 89.324 1021 100 5 50 1062 667894627 667895646 0.000000e+00 1273.0
16 TraesCS1B01G107800 chr3B 88.186 1075 116 8 1 1066 81533060 81531988 0.000000e+00 1271.0
17 TraesCS1B01G107800 chr3B 89.474 57 5 1 6 61 731195635 731195691 3.020000e-08 71.3
18 TraesCS1B01G107800 chr4D 85.345 232 23 5 5796 6020 181319737 181319510 4.700000e-56 230.0
19 TraesCS1B01G107800 chr4A 82.328 232 34 4 5269 5495 51502430 51502659 1.720000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G107800 chr1B 119882160 119888193 6033 False 11143 11143 100.000000 1 6034 1 chr1B.!!$F1 6033
1 TraesCS1B01G107800 chr1D 76498303 76502827 4524 False 3463 6113 94.705500 1129 5607 2 chr1D.!!$F1 4478
2 TraesCS1B01G107800 chr1A 77103748 77109342 5594 False 2246 5572 94.224333 1094 5607 3 chr1A.!!$F2 4513
3 TraesCS1B01G107800 chr1A 557420222 557421276 1054 False 1343 1343 89.616000 1 1066 1 chr1A.!!$F1 1065
4 TraesCS1B01G107800 chr6B 529703632 529704703 1071 True 1373 1373 89.842000 1 1069 1 chr6B.!!$R2 1068
5 TraesCS1B01G107800 chr7A 493654794 493655862 1068 False 1367 1367 89.804000 1 1066 1 chr7A.!!$F1 1065
6 TraesCS1B01G107800 chr2B 75524969 75526038 1069 False 1358 1358 89.636000 1 1067 1 chr2B.!!$F2 1066
7 TraesCS1B01G107800 chr2B 800827165 800828151 986 False 1188 1188 88.407000 75 1064 1 chr2B.!!$F3 989
8 TraesCS1B01G107800 chr2B 45804780 45805848 1068 False 1168 1168 86.486000 1 1066 1 chr2B.!!$F1 1065
9 TraesCS1B01G107800 chr7B 136877036 136878107 1071 False 1319 1319 88.920000 1 1070 1 chr7B.!!$F1 1069
10 TraesCS1B01G107800 chr5A 667894627 667895646 1019 False 1273 1273 89.324000 50 1062 1 chr5A.!!$F1 1012
11 TraesCS1B01G107800 chr3B 81531988 81533060 1072 True 1271 1271 88.186000 1 1066 1 chr3B.!!$R1 1065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 581 0.614294 TCTCGACCTCCTCTCTCGTT 59.386 55.0 0.0 0.0 0.00 3.85 F
1070 1089 0.109319 CAACCAAACACGCCCATAGC 60.109 55.0 0.0 0.0 38.52 2.97 F
1318 1342 0.456221 TTCTTCGTCCTCATCGGAGC 59.544 55.0 0.0 0.0 44.20 4.70 F
2582 2649 0.458025 CAAGCTTCGTCCGGGAGTAC 60.458 60.0 0.0 0.0 0.00 2.73 F
2724 2791 0.037605 GGTGACGTGGTAAGAGGTGG 60.038 60.0 0.0 0.0 0.00 4.61 F
3930 4001 0.459934 GCACAGTTGCTTTTGCCACA 60.460 50.0 0.0 0.0 46.17 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 1636 0.034476 CACAGGAGCAGAGCACAAGA 59.966 55.000 0.00 0.0 0.00 3.02 R
2693 2760 0.617535 ACGTCACCATCTCCCCATGA 60.618 55.000 0.00 0.0 0.00 3.07 R
2702 2769 1.549170 ACCTCTTACCACGTCACCATC 59.451 52.381 0.00 0.0 0.00 3.51 R
3826 3897 2.306847 ACTTGGGAACGCTGTTGAAAT 58.693 42.857 0.00 0.0 0.00 2.17 R
4192 4263 3.936372 TCAAGTGGGTCTTCTCTTACG 57.064 47.619 0.00 0.0 33.63 3.18 R
5675 6889 0.171455 ACGCGTGTTTCCTTTTTGCA 59.829 45.000 12.93 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 0.981183 TGCTACGGTTCCATTCAGGT 59.019 50.000 0.00 0.00 39.02 4.00
54 56 1.134818 CGGTTCCATTCAGGTGATCGA 60.135 52.381 0.00 0.00 39.02 3.59
98 100 3.683340 AGTTCTTAATTTCGTCTTCCCGC 59.317 43.478 0.00 0.00 0.00 6.13
113 115 1.162800 CCCGCTTGGAGCTATTCTGC 61.163 60.000 0.00 0.00 39.60 4.26
125 127 6.208402 TGGAGCTATTCTGCACAAATTTTGTA 59.792 34.615 14.13 0.00 43.23 2.41
140 142 3.656651 TTTGTAAGATTCATCGCGCAG 57.343 42.857 8.75 0.00 0.00 5.18
167 169 9.357652 GATCGATCATTTGAAATTTCCTTTGAA 57.642 29.630 20.52 0.00 0.00 2.69
179 181 2.504367 TCCTTTGAACAGCAGCCTAAC 58.496 47.619 0.00 0.00 0.00 2.34
182 184 2.656947 TTGAACAGCAGCCTAACCTT 57.343 45.000 0.00 0.00 0.00 3.50
207 212 3.945285 AGTTCCTCACAACATTCGTGTTT 59.055 39.130 0.00 0.00 35.79 2.83
223 228 8.652463 CATTCGTGTTTTAAGTTTTTGGTTTCT 58.348 29.630 0.00 0.00 0.00 2.52
237 242 4.445452 TGGTTTCTACGATCGTAGCTTT 57.555 40.909 38.44 13.83 45.51 3.51
238 243 4.418392 TGGTTTCTACGATCGTAGCTTTC 58.582 43.478 38.44 28.51 45.51 2.62
298 303 1.077357 TCGAGCTCCTCTGTCCTCC 60.077 63.158 8.47 0.00 0.00 4.30
299 304 1.379176 CGAGCTCCTCTGTCCTCCA 60.379 63.158 8.47 0.00 0.00 3.86
354 360 1.341156 CGCCCTTCCCCTTGATCTCT 61.341 60.000 0.00 0.00 0.00 3.10
359 365 2.012673 CTTCCCCTTGATCTCTTTGCG 58.987 52.381 0.00 0.00 0.00 4.85
360 366 0.984230 TCCCCTTGATCTCTTTGCGT 59.016 50.000 0.00 0.00 0.00 5.24
433 440 1.248785 TGTCGTCCTCCTACTGCACC 61.249 60.000 0.00 0.00 0.00 5.01
463 470 4.612536 GCGCGCACACTGCAGTTT 62.613 61.111 29.10 8.53 45.36 2.66
504 511 2.045524 GATCATCTTGGCCTCCTCTCA 58.954 52.381 3.32 0.00 0.00 3.27
573 581 0.614294 TCTCGACCTCCTCTCTCGTT 59.386 55.000 0.00 0.00 0.00 3.85
600 608 2.108157 GGACGATACCATGGCGCA 59.892 61.111 13.04 0.00 0.00 6.09
618 626 2.675032 CGCAAGCACTGTATTCTCCTCA 60.675 50.000 0.00 0.00 0.00 3.86
800 808 3.866515 TTTCTTCTCCCCCTTCCTCTA 57.133 47.619 0.00 0.00 0.00 2.43
840 848 2.079925 GCTAAGTGCAAGTGCTAGCTT 58.920 47.619 17.23 12.02 38.50 3.74
850 858 7.284034 AGTGCAAGTGCTAGCTTTTAATCATAT 59.716 33.333 17.23 0.00 42.66 1.78
956 968 1.839354 TGCAGGAAGTCCATATGCAGA 59.161 47.619 8.29 0.00 39.03 4.26
971 983 6.294453 CCATATGCAGACAACCAAACAACTTA 60.294 38.462 0.00 0.00 0.00 2.24
1070 1089 0.109319 CAACCAAACACGCCCATAGC 60.109 55.000 0.00 0.00 38.52 2.97
1071 1090 0.538516 AACCAAACACGCCCATAGCA 60.539 50.000 0.00 0.00 44.04 3.49
1072 1091 0.538516 ACCAAACACGCCCATAGCAA 60.539 50.000 0.00 0.00 44.04 3.91
1073 1092 0.600557 CCAAACACGCCCATAGCAAA 59.399 50.000 0.00 0.00 44.04 3.68
1074 1093 1.204467 CCAAACACGCCCATAGCAAAT 59.796 47.619 0.00 0.00 44.04 2.32
1075 1094 2.425312 CCAAACACGCCCATAGCAAATA 59.575 45.455 0.00 0.00 44.04 1.40
1076 1095 3.434637 CAAACACGCCCATAGCAAATAC 58.565 45.455 0.00 0.00 44.04 1.89
1077 1096 1.295792 ACACGCCCATAGCAAATACG 58.704 50.000 0.00 0.00 44.04 3.06
1078 1097 0.586319 CACGCCCATAGCAAATACGG 59.414 55.000 0.00 0.00 44.04 4.02
1079 1098 0.466543 ACGCCCATAGCAAATACGGA 59.533 50.000 0.00 0.00 44.04 4.69
1080 1099 1.148310 CGCCCATAGCAAATACGGAG 58.852 55.000 0.00 0.00 44.04 4.63
1081 1100 1.540363 CGCCCATAGCAAATACGGAGT 60.540 52.381 0.00 0.00 44.57 3.85
1082 1101 2.288579 CGCCCATAGCAAATACGGAGTA 60.289 50.000 0.00 0.00 46.11 2.59
1083 1102 3.064931 GCCCATAGCAAATACGGAGTAC 58.935 50.000 0.00 0.00 44.47 2.73
1084 1103 4.111023 GCCCATAGCAAATACGGAGTACC 61.111 52.174 0.00 0.00 44.47 3.34
1085 1104 6.547202 GCCCATAGCAAATACGGAGTACCA 62.547 50.000 0.00 0.00 44.47 3.25
1086 1105 7.935368 GCCCATAGCAAATACGGAGTACCAA 62.935 48.000 0.00 0.00 44.47 3.67
1096 1115 4.546829 ACGGAGTACCAAATAGCAAAGA 57.453 40.909 0.00 0.00 41.94 2.52
1097 1116 5.099042 ACGGAGTACCAAATAGCAAAGAT 57.901 39.130 0.00 0.00 41.94 2.40
1098 1117 4.876107 ACGGAGTACCAAATAGCAAAGATG 59.124 41.667 0.00 0.00 41.94 2.90
1099 1118 5.116180 CGGAGTACCAAATAGCAAAGATGA 58.884 41.667 0.00 0.00 35.59 2.92
1100 1119 5.584649 CGGAGTACCAAATAGCAAAGATGAA 59.415 40.000 0.00 0.00 35.59 2.57
1101 1120 6.093495 CGGAGTACCAAATAGCAAAGATGAAA 59.907 38.462 0.00 0.00 35.59 2.69
1102 1121 7.201732 CGGAGTACCAAATAGCAAAGATGAAAT 60.202 37.037 0.00 0.00 35.59 2.17
1103 1122 8.131731 GGAGTACCAAATAGCAAAGATGAAATC 58.868 37.037 0.00 0.00 38.87 2.17
1150 1169 7.326305 CGTCAAAATATCTCGATCGGAATACTT 59.674 37.037 16.41 6.88 0.00 2.24
1154 1173 7.606858 AATATCTCGATCGGAATACTTACGA 57.393 36.000 16.41 0.00 41.20 3.43
1165 1189 4.479619 GAATACTTACGACGTGACCACTT 58.520 43.478 11.56 0.00 0.00 3.16
1167 1191 3.988379 ACTTACGACGTGACCACTTTA 57.012 42.857 11.56 0.00 0.00 1.85
1168 1192 3.632189 ACTTACGACGTGACCACTTTAC 58.368 45.455 11.56 0.00 0.00 2.01
1169 1193 3.316308 ACTTACGACGTGACCACTTTACT 59.684 43.478 11.56 0.00 0.00 2.24
1170 1194 2.412421 ACGACGTGACCACTTTACTC 57.588 50.000 0.00 0.00 0.00 2.59
1171 1195 1.952296 ACGACGTGACCACTTTACTCT 59.048 47.619 0.00 0.00 0.00 3.24
1172 1196 2.287427 ACGACGTGACCACTTTACTCTG 60.287 50.000 0.00 0.00 0.00 3.35
1178 1202 0.770557 ACCACTTTACTCTGGCCCCA 60.771 55.000 0.00 0.00 0.00 4.96
1238 1262 2.697425 CAAATCGCGCGACCTCTG 59.303 61.111 37.37 24.03 0.00 3.35
1318 1342 0.456221 TTCTTCGTCCTCATCGGAGC 59.544 55.000 0.00 0.00 44.20 4.70
1434 1461 2.616842 GGACCGCTTAATTATGTGGTGG 59.383 50.000 30.69 18.20 45.76 4.61
1598 1625 3.428452 GGTAGCGTGGCCCTTTTAATTTC 60.428 47.826 0.00 0.00 0.00 2.17
1609 1636 8.655901 TGGCCCTTTTAATTTCTTTGTTTATCT 58.344 29.630 0.00 0.00 0.00 1.98
1660 1722 3.830755 TCTACACTGAAGGGTTAGTGGTC 59.169 47.826 8.95 0.00 46.52 4.02
1689 1751 1.302832 GGCCCCAGTCTCTGTGTTG 60.303 63.158 0.00 0.00 0.00 3.33
1763 1827 2.347731 TGTAATTTGACGCGCCACATA 58.652 42.857 5.73 0.00 0.00 2.29
1803 1867 1.598701 GCTGGAAAGGGGTGTCATGC 61.599 60.000 0.00 0.00 0.00 4.06
1820 1884 1.631405 TGCCTCTGGTTTTGGAATGG 58.369 50.000 0.00 0.00 0.00 3.16
1838 1902 5.006358 GGAATGGACGTATGTTGATGTGTAC 59.994 44.000 0.00 0.00 0.00 2.90
1859 1923 6.751888 TGTACTCACTTTACACATGATCATCG 59.248 38.462 4.86 2.53 0.00 3.84
1940 2004 6.954232 ACTAATTTGTCCTCTTAAATCGGGA 58.046 36.000 0.00 0.00 0.00 5.14
1965 2029 6.391227 ACCATTTTGAACCTCAGTTTACAG 57.609 37.500 0.00 0.00 35.94 2.74
1973 2037 6.880484 TGAACCTCAGTTTACAGAACTTACA 58.120 36.000 0.00 0.00 35.94 2.41
1977 2041 8.747538 ACCTCAGTTTACAGAACTTACATTTT 57.252 30.769 0.00 0.00 0.00 1.82
2001 2065 6.904463 ATAAACCCGTAAGTTGAAATGGTT 57.096 33.333 0.00 0.00 36.22 3.67
2050 2115 6.307776 TGGTGTTCTTTATGGTGTATTTCCA 58.692 36.000 0.00 0.00 39.41 3.53
2054 2119 9.139174 GTGTTCTTTATGGTGTATTTCCAAATG 57.861 33.333 0.00 0.00 38.52 2.32
2055 2120 8.865090 TGTTCTTTATGGTGTATTTCCAAATGT 58.135 29.630 0.00 0.00 38.52 2.71
2068 2133 3.191669 TCCAAATGTAATACAGCGTCGG 58.808 45.455 0.00 0.00 0.00 4.79
2071 2136 4.026310 CCAAATGTAATACAGCGTCGGTAC 60.026 45.833 0.00 0.00 0.00 3.34
2124 2189 3.849911 CTTTGAGTGAGTTCATAGGCGA 58.150 45.455 0.00 0.00 0.00 5.54
2255 2322 1.461127 GGTCAGCATGTTCGTTCAGTC 59.539 52.381 0.00 0.00 37.40 3.51
2360 2427 4.400884 TGATACCACCACATTGTTATTGGC 59.599 41.667 7.65 0.00 33.25 4.52
2433 2500 3.926527 TCTTTGACAAAGATGACGATCCG 59.073 43.478 23.67 0.00 42.31 4.18
2487 2554 3.119495 AGTCTTATCAATTTTGGGCGCAC 60.119 43.478 10.83 6.04 0.00 5.34
2489 2556 2.937469 TATCAATTTTGGGCGCACTG 57.063 45.000 12.74 0.00 0.00 3.66
2496 2563 2.054140 TTTGGGCGCACTGTTTCGAC 62.054 55.000 12.74 0.49 0.00 4.20
2505 2572 2.224079 GCACTGTTTCGACATGTGTGAT 59.776 45.455 1.15 0.00 0.00 3.06
2543 2610 5.292101 CCTACTGCTGTTTACATTGCTAGAC 59.708 44.000 0.09 0.00 0.00 2.59
2582 2649 0.458025 CAAGCTTCGTCCGGGAGTAC 60.458 60.000 0.00 0.00 0.00 2.73
2693 2760 4.514401 GTTGGATGACGAAGGGAATTAGT 58.486 43.478 0.00 0.00 0.00 2.24
2702 2769 3.495100 CGAAGGGAATTAGTCATGGGGAG 60.495 52.174 0.00 0.00 0.00 4.30
2711 2778 0.179073 GTCATGGGGAGATGGTGACG 60.179 60.000 0.00 0.00 0.00 4.35
2720 2787 2.159226 GGAGATGGTGACGTGGTAAGAG 60.159 54.545 0.00 0.00 0.00 2.85
2724 2791 0.037605 GGTGACGTGGTAAGAGGTGG 60.038 60.000 0.00 0.00 0.00 4.61
2725 2792 0.669625 GTGACGTGGTAAGAGGTGGC 60.670 60.000 0.00 0.00 0.00 5.01
2744 2811 8.879427 AGGTGGCCCTTAATTCAATTATATAC 57.121 34.615 0.00 0.00 38.13 1.47
2749 2816 8.957466 GGCCCTTAATTCAATTATATACTGTCC 58.043 37.037 0.00 0.00 0.00 4.02
2772 2839 3.580895 TGTAGGTGTTCTGTGCATTAGGA 59.419 43.478 0.00 0.00 0.00 2.94
2778 2845 5.088739 GTGTTCTGTGCATTAGGATTTTCG 58.911 41.667 0.00 0.00 0.00 3.46
2822 2890 4.576873 TCCAACACTTGTAATTTTCTCGCA 59.423 37.500 0.00 0.00 0.00 5.10
2823 2891 5.066634 TCCAACACTTGTAATTTTCTCGCAA 59.933 36.000 0.00 0.00 0.00 4.85
2824 2892 5.746245 CCAACACTTGTAATTTTCTCGCAAA 59.254 36.000 0.00 0.00 0.00 3.68
2929 2997 5.973565 GTGGATCTTTGTGTCAGTCAAAAAG 59.026 40.000 4.39 4.39 46.94 2.27
2933 3001 7.226720 GGATCTTTGTGTCAGTCAAAAAGTCTA 59.773 37.037 9.38 0.00 46.15 2.59
2953 3021 6.873605 AGTCTATGATTGTCAACATTTCGTCA 59.126 34.615 6.13 0.00 0.00 4.35
3042 3110 9.729281 AGAATTATTTGAAATGTTTCCTGCATT 57.271 25.926 0.00 0.00 38.09 3.56
3225 3293 9.871238 ACAACATATGAAAACTAACTACTCGAT 57.129 29.630 10.38 0.00 0.00 3.59
3393 3463 6.093633 GTGGTTGATGGTGTTTCTATCCTAAC 59.906 42.308 0.00 0.00 33.85 2.34
3612 3682 9.860898 ATAGTTTGAAACATATTTCCTTTGAGC 57.139 29.630 11.02 0.00 43.18 4.26
3767 3838 6.747125 ACTGTCAGCATCAGAGTGATTATAG 58.253 40.000 0.00 0.00 34.28 1.31
3826 3897 3.878237 ACTCACGGGGATAGACTATCA 57.122 47.619 21.32 2.05 36.91 2.15
3930 4001 0.459934 GCACAGTTGCTTTTGCCACA 60.460 50.000 0.00 0.00 46.17 4.17
4161 4232 5.772825 AGTTCACATGTACATTGCAAACT 57.227 34.783 5.37 10.53 0.00 2.66
4192 4263 8.014322 TGATTTTTCGTACAAGTCATACTCAC 57.986 34.615 0.00 0.00 0.00 3.51
4198 4269 5.639082 TCGTACAAGTCATACTCACGTAAGA 59.361 40.000 0.00 0.00 43.62 2.10
4208 4279 2.557490 ACTCACGTAAGAGAAGACCCAC 59.443 50.000 9.68 0.00 38.98 4.61
4258 4335 5.780984 AGTGCAGGTAAACAGTAAGAGTAC 58.219 41.667 0.00 0.00 0.00 2.73
4261 4338 5.070714 TGCAGGTAAACAGTAAGAGTACCAA 59.929 40.000 0.00 0.00 37.31 3.67
4345 4422 7.442969 TGCTCTCGTTCAATCTTTACCTTTTTA 59.557 33.333 0.00 0.00 0.00 1.52
4506 4586 7.615039 ATTTATGGGGCAATCACAAATATGA 57.385 32.000 0.00 0.00 0.00 2.15
4660 4740 0.397941 CCAGAAGTTGGCTGACTCCA 59.602 55.000 0.00 0.00 40.87 3.86
4732 4812 8.887264 ATATACAGTCCTAAATACTCCCTCTG 57.113 38.462 0.00 0.00 0.00 3.35
4733 4813 4.949121 ACAGTCCTAAATACTCCCTCTGT 58.051 43.478 0.00 0.00 0.00 3.41
4820 4906 6.491745 AGAGAGAGAGTACAACTGAATGTGAA 59.508 38.462 0.00 0.00 34.75 3.18
4887 4974 7.174426 ACATTTCTTTAGTGGGTACTTACTTGC 59.826 37.037 7.65 0.00 38.36 4.01
4910 4997 1.135199 CCTCATGTTTGGCAGATGCAC 60.135 52.381 7.19 0.00 44.36 4.57
4995 5082 1.476085 CCATTGTTTTCCTATGCGCCA 59.524 47.619 4.18 0.00 0.00 5.69
5018 5105 2.358267 AGCCCTTCTACTTCGTGTATCG 59.642 50.000 0.00 0.00 41.41 2.92
5039 5126 7.886629 ATCGGATAACTTACTGTAGTGGTAA 57.113 36.000 0.00 0.00 0.00 2.85
5128 5215 2.037941 ATCACTCACGATATGCGACG 57.962 50.000 0.00 0.00 44.57 5.12
5146 5233 1.806542 ACGCACTTTCTTGCCACTATG 59.193 47.619 0.00 0.00 39.53 2.23
5155 5242 5.441718 TTCTTGCCACTATGGAAGAAGAT 57.558 39.130 13.73 0.00 40.96 2.40
5283 5372 1.006998 ACCTGGGCAAAGGCATCAATA 59.993 47.619 5.44 0.00 41.46 1.90
5333 5422 5.937540 TGCTAATCGAAGATTTTGAAGTGGA 59.062 36.000 0.34 0.00 45.12 4.02
5334 5423 6.092670 TGCTAATCGAAGATTTTGAAGTGGAG 59.907 38.462 0.34 0.00 45.12 3.86
5368 5457 7.492344 CCTTTGACTTAATTGTTTGTTGCTTCT 59.508 33.333 0.00 0.00 0.00 2.85
5441 5530 3.691049 TTCTTGTTTTGACTGCTTCCG 57.309 42.857 0.00 0.00 0.00 4.30
5457 5546 0.106918 TCCGTTGGTTATCCATGCCC 60.107 55.000 0.00 0.00 43.91 5.36
5462 5551 2.427095 GTTGGTTATCCATGCCCTGTTC 59.573 50.000 0.00 0.00 43.91 3.18
5485 5574 0.463620 TTTTTCAGCCCTTGTGCACC 59.536 50.000 15.69 0.00 0.00 5.01
5499 6048 2.479566 TGCACCAAGGTTTTGCAAAA 57.520 40.000 20.46 20.46 43.16 2.44
5500 6049 2.783135 TGCACCAAGGTTTTGCAAAAA 58.217 38.095 25.40 7.97 43.16 1.94
5549 6763 6.865205 GGCTATGATTCCATTTTAGACAATGC 59.135 38.462 0.00 0.00 33.42 3.56
5606 6820 8.795842 TTCTTTTGTTTAGACTTACACCTTGA 57.204 30.769 0.00 0.00 0.00 3.02
5607 6821 8.205131 TCTTTTGTTTAGACTTACACCTTGAC 57.795 34.615 0.00 0.00 0.00 3.18
5608 6822 8.044908 TCTTTTGTTTAGACTTACACCTTGACT 58.955 33.333 0.00 0.00 0.00 3.41
5609 6823 9.321562 CTTTTGTTTAGACTTACACCTTGACTA 57.678 33.333 0.00 0.00 0.00 2.59
5610 6824 8.882415 TTTGTTTAGACTTACACCTTGACTAG 57.118 34.615 0.00 0.00 0.00 2.57
5611 6825 7.828508 TGTTTAGACTTACACCTTGACTAGA 57.171 36.000 0.00 0.00 0.00 2.43
5612 6826 8.241497 TGTTTAGACTTACACCTTGACTAGAA 57.759 34.615 0.00 0.00 0.00 2.10
5613 6827 8.358148 TGTTTAGACTTACACCTTGACTAGAAG 58.642 37.037 0.00 0.00 0.00 2.85
5614 6828 5.394224 AGACTTACACCTTGACTAGAAGC 57.606 43.478 0.00 0.00 0.00 3.86
5615 6829 4.833380 AGACTTACACCTTGACTAGAAGCA 59.167 41.667 0.00 0.00 0.00 3.91
5616 6830 5.482175 AGACTTACACCTTGACTAGAAGCAT 59.518 40.000 0.00 0.00 0.00 3.79
5617 6831 6.663953 AGACTTACACCTTGACTAGAAGCATA 59.336 38.462 0.00 0.00 0.00 3.14
5618 6832 6.868622 ACTTACACCTTGACTAGAAGCATAG 58.131 40.000 0.00 0.00 0.00 2.23
5619 6833 4.744795 ACACCTTGACTAGAAGCATAGG 57.255 45.455 0.00 4.69 0.00 2.57
5620 6834 3.118592 ACACCTTGACTAGAAGCATAGGC 60.119 47.826 0.00 0.00 41.61 3.93
5632 6846 2.772739 CATAGGCGGGATATGCTGC 58.227 57.895 19.05 19.05 0.00 5.25
5633 6847 1.086067 CATAGGCGGGATATGCTGCG 61.086 60.000 20.27 5.31 0.00 5.18
5634 6848 2.859273 ATAGGCGGGATATGCTGCGC 62.859 60.000 20.27 14.43 0.00 6.09
5637 6851 2.359107 CGGGATATGCTGCGCCAT 60.359 61.111 4.18 4.41 0.00 4.40
5638 6852 1.079197 CGGGATATGCTGCGCCATA 60.079 57.895 4.18 6.90 32.67 2.74
5639 6853 0.673333 CGGGATATGCTGCGCCATAA 60.673 55.000 4.18 0.00 31.96 1.90
5640 6854 1.533625 GGGATATGCTGCGCCATAAA 58.466 50.000 4.18 0.00 31.96 1.40
5641 6855 1.200020 GGGATATGCTGCGCCATAAAC 59.800 52.381 4.18 5.47 31.96 2.01
5642 6856 1.879380 GGATATGCTGCGCCATAAACA 59.121 47.619 4.18 0.00 31.96 2.83
5643 6857 2.350772 GGATATGCTGCGCCATAAACAC 60.351 50.000 4.18 0.90 31.96 3.32
5644 6858 1.743996 TATGCTGCGCCATAAACACA 58.256 45.000 4.18 0.00 0.00 3.72
5645 6859 0.887247 ATGCTGCGCCATAAACACAA 59.113 45.000 4.18 0.00 0.00 3.33
5646 6860 0.670706 TGCTGCGCCATAAACACAAA 59.329 45.000 4.18 0.00 0.00 2.83
5647 6861 1.271934 TGCTGCGCCATAAACACAAAT 59.728 42.857 4.18 0.00 0.00 2.32
5648 6862 2.288702 TGCTGCGCCATAAACACAAATT 60.289 40.909 4.18 0.00 0.00 1.82
5649 6863 3.057245 TGCTGCGCCATAAACACAAATTA 60.057 39.130 4.18 0.00 0.00 1.40
5650 6864 3.923461 GCTGCGCCATAAACACAAATTAA 59.077 39.130 4.18 0.00 0.00 1.40
5651 6865 4.031652 GCTGCGCCATAAACACAAATTAAG 59.968 41.667 4.18 0.00 0.00 1.85
5652 6866 5.378292 TGCGCCATAAACACAAATTAAGA 57.622 34.783 4.18 0.00 0.00 2.10
5653 6867 5.773575 TGCGCCATAAACACAAATTAAGAA 58.226 33.333 4.18 0.00 0.00 2.52
5654 6868 6.216569 TGCGCCATAAACACAAATTAAGAAA 58.783 32.000 4.18 0.00 0.00 2.52
5655 6869 6.701841 TGCGCCATAAACACAAATTAAGAAAA 59.298 30.769 4.18 0.00 0.00 2.29
5656 6870 7.386299 TGCGCCATAAACACAAATTAAGAAAAT 59.614 29.630 4.18 0.00 0.00 1.82
5657 6871 8.865001 GCGCCATAAACACAAATTAAGAAAATA 58.135 29.630 0.00 0.00 0.00 1.40
5684 6898 9.373603 TGAAGAATCAATATTCATGCAAAAAGG 57.626 29.630 0.00 0.00 43.44 3.11
5685 6899 9.590451 GAAGAATCAATATTCATGCAAAAAGGA 57.410 29.630 0.00 0.00 43.44 3.36
5686 6900 9.947433 AAGAATCAATATTCATGCAAAAAGGAA 57.053 25.926 0.00 0.00 43.44 3.36
5687 6901 9.947433 AGAATCAATATTCATGCAAAAAGGAAA 57.053 25.926 0.00 0.00 43.44 3.13
5688 6902 9.977762 GAATCAATATTCATGCAAAAAGGAAAC 57.022 29.630 0.00 0.00 41.09 2.78
5689 6903 9.504708 AATCAATATTCATGCAAAAAGGAAACA 57.495 25.926 0.00 0.00 0.00 2.83
5690 6904 8.309163 TCAATATTCATGCAAAAAGGAAACAC 57.691 30.769 0.00 0.00 0.00 3.32
5691 6905 6.949578 ATATTCATGCAAAAAGGAAACACG 57.050 33.333 0.00 0.00 0.00 4.49
5692 6906 2.468831 TCATGCAAAAAGGAAACACGC 58.531 42.857 0.00 0.00 0.00 5.34
5693 6907 1.189884 CATGCAAAAAGGAAACACGCG 59.810 47.619 3.53 3.53 0.00 6.01
5694 6908 0.171455 TGCAAAAAGGAAACACGCGT 59.829 45.000 5.58 5.58 0.00 6.01
5695 6909 1.273688 GCAAAAAGGAAACACGCGTT 58.726 45.000 10.22 0.00 36.73 4.84
5696 6910 1.006494 GCAAAAAGGAAACACGCGTTG 60.006 47.619 10.22 8.21 34.86 4.10
5697 6911 2.255316 CAAAAAGGAAACACGCGTTGT 58.745 42.857 10.22 8.97 41.74 3.32
5698 6912 3.427243 CAAAAAGGAAACACGCGTTGTA 58.573 40.909 10.22 0.00 37.51 2.41
5699 6913 3.761311 AAAAGGAAACACGCGTTGTAA 57.239 38.095 10.22 0.00 37.51 2.41
5700 6914 3.761311 AAAGGAAACACGCGTTGTAAA 57.239 38.095 10.22 0.00 37.51 2.01
5701 6915 3.328237 AAGGAAACACGCGTTGTAAAG 57.672 42.857 10.22 0.00 37.51 1.85
5702 6916 1.003223 AGGAAACACGCGTTGTAAAGC 60.003 47.619 10.22 2.37 37.51 3.51
5703 6917 1.268133 GGAAACACGCGTTGTAAAGCA 60.268 47.619 10.22 0.00 37.51 3.91
5704 6918 2.603652 GGAAACACGCGTTGTAAAGCAT 60.604 45.455 10.22 0.00 37.51 3.79
5705 6919 3.364167 GGAAACACGCGTTGTAAAGCATA 60.364 43.478 10.22 0.00 37.51 3.14
5706 6920 3.881780 AACACGCGTTGTAAAGCATAA 57.118 38.095 10.22 0.00 37.51 1.90
5707 6921 3.881780 ACACGCGTTGTAAAGCATAAA 57.118 38.095 10.22 0.00 36.32 1.40
5708 6922 4.413495 ACACGCGTTGTAAAGCATAAAT 57.587 36.364 10.22 0.00 36.32 1.40
5709 6923 4.789784 ACACGCGTTGTAAAGCATAAATT 58.210 34.783 10.22 0.00 36.32 1.82
5710 6924 5.929278 ACACGCGTTGTAAAGCATAAATTA 58.071 33.333 10.22 0.00 36.32 1.40
5711 6925 6.372185 ACACGCGTTGTAAAGCATAAATTAA 58.628 32.000 10.22 0.00 36.32 1.40
5712 6926 6.521821 ACACGCGTTGTAAAGCATAAATTAAG 59.478 34.615 10.22 0.00 36.32 1.85
5713 6927 6.739100 CACGCGTTGTAAAGCATAAATTAAGA 59.261 34.615 10.22 0.00 0.00 2.10
5714 6928 7.269511 CACGCGTTGTAAAGCATAAATTAAGAA 59.730 33.333 10.22 0.00 0.00 2.52
5715 6929 7.804129 ACGCGTTGTAAAGCATAAATTAAGAAA 59.196 29.630 5.58 0.00 0.00 2.52
5716 6930 8.631695 CGCGTTGTAAAGCATAAATTAAGAAAA 58.368 29.630 0.00 0.00 0.00 2.29
5804 7018 8.955061 ATTTGAAATGACAAAGTACAAGATCG 57.045 30.769 0.00 0.00 41.87 3.69
5805 7019 7.490962 TTGAAATGACAAAGTACAAGATCGT 57.509 32.000 0.00 0.00 0.00 3.73
5806 7020 7.490962 TGAAATGACAAAGTACAAGATCGTT 57.509 32.000 0.00 0.00 0.00 3.85
5807 7021 7.572759 TGAAATGACAAAGTACAAGATCGTTC 58.427 34.615 0.00 0.00 0.00 3.95
5808 7022 7.225734 TGAAATGACAAAGTACAAGATCGTTCA 59.774 33.333 0.00 0.00 0.00 3.18
5809 7023 7.490962 AATGACAAAGTACAAGATCGTTCAA 57.509 32.000 0.00 0.00 0.00 2.69
5810 7024 6.525121 TGACAAAGTACAAGATCGTTCAAG 57.475 37.500 0.00 0.00 0.00 3.02
5811 7025 6.277605 TGACAAAGTACAAGATCGTTCAAGA 58.722 36.000 0.00 0.00 0.00 3.02
5812 7026 6.200286 TGACAAAGTACAAGATCGTTCAAGAC 59.800 38.462 0.00 0.00 0.00 3.01
5813 7027 6.281405 ACAAAGTACAAGATCGTTCAAGACT 58.719 36.000 0.00 0.00 0.00 3.24
5814 7028 7.431249 ACAAAGTACAAGATCGTTCAAGACTA 58.569 34.615 0.00 0.00 0.00 2.59
5815 7029 7.381678 ACAAAGTACAAGATCGTTCAAGACTAC 59.618 37.037 0.00 0.00 0.00 2.73
5816 7030 5.952033 AGTACAAGATCGTTCAAGACTACC 58.048 41.667 0.00 0.00 0.00 3.18
5817 7031 3.834610 ACAAGATCGTTCAAGACTACCG 58.165 45.455 0.00 0.00 0.00 4.02
5818 7032 3.504906 ACAAGATCGTTCAAGACTACCGA 59.495 43.478 0.00 0.00 0.00 4.69
5819 7033 4.022589 ACAAGATCGTTCAAGACTACCGAA 60.023 41.667 0.00 0.00 0.00 4.30
5820 7034 4.778534 AGATCGTTCAAGACTACCGAAA 57.221 40.909 0.00 0.00 0.00 3.46
5821 7035 4.734917 AGATCGTTCAAGACTACCGAAAG 58.265 43.478 0.00 0.00 0.00 2.62
5822 7036 4.458295 AGATCGTTCAAGACTACCGAAAGA 59.542 41.667 0.00 0.00 32.94 2.52
5823 7037 4.778534 TCGTTCAAGACTACCGAAAGAT 57.221 40.909 0.00 0.00 0.00 2.40
5824 7038 5.885230 TCGTTCAAGACTACCGAAAGATA 57.115 39.130 0.00 0.00 0.00 1.98
5825 7039 5.877031 TCGTTCAAGACTACCGAAAGATAG 58.123 41.667 0.00 0.00 31.73 2.08
5826 7040 5.413833 TCGTTCAAGACTACCGAAAGATAGT 59.586 40.000 0.00 0.00 45.16 2.12
5827 7041 6.595326 TCGTTCAAGACTACCGAAAGATAGTA 59.405 38.462 0.00 0.00 41.63 1.82
5828 7042 7.281774 TCGTTCAAGACTACCGAAAGATAGTAT 59.718 37.037 0.00 0.00 41.63 2.12
5829 7043 8.554528 CGTTCAAGACTACCGAAAGATAGTATA 58.445 37.037 0.00 0.00 41.63 1.47
5830 7044 9.881529 GTTCAAGACTACCGAAAGATAGTATAG 57.118 37.037 0.00 0.00 41.63 1.31
5831 7045 9.842775 TTCAAGACTACCGAAAGATAGTATAGA 57.157 33.333 0.00 0.00 41.63 1.98
5835 7049 9.585099 AGACTACCGAAAGATAGTATAGATACG 57.415 37.037 0.00 0.00 41.63 3.06
5836 7050 9.579768 GACTACCGAAAGATAGTATAGATACGA 57.420 37.037 0.00 0.00 41.63 3.43
5837 7051 9.935241 ACTACCGAAAGATAGTATAGATACGAA 57.065 33.333 0.00 0.00 39.13 3.85
5840 7054 8.934825 ACCGAAAGATAGTATAGATACGAAGTC 58.065 37.037 0.00 0.00 43.93 3.01
5841 7055 8.933807 CCGAAAGATAGTATAGATACGAAGTCA 58.066 37.037 0.00 0.00 43.93 3.41
5855 7069 9.688091 AGATACGAAGTCATATATACCTCACAT 57.312 33.333 0.00 0.00 43.93 3.21
5858 7072 8.865420 ACGAAGTCATATATACCTCACATACT 57.135 34.615 0.00 0.00 29.74 2.12
5859 7073 9.955102 ACGAAGTCATATATACCTCACATACTA 57.045 33.333 0.00 0.00 29.74 1.82
5897 7111 7.400599 AAAATACCTCACATACTACAGACGA 57.599 36.000 0.00 0.00 0.00 4.20
5898 7112 6.374565 AATACCTCACATACTACAGACGAC 57.625 41.667 0.00 0.00 0.00 4.34
5899 7113 3.682696 ACCTCACATACTACAGACGACA 58.317 45.455 0.00 0.00 0.00 4.35
5900 7114 3.439476 ACCTCACATACTACAGACGACAC 59.561 47.826 0.00 0.00 0.00 3.67
5901 7115 3.181499 CCTCACATACTACAGACGACACC 60.181 52.174 0.00 0.00 0.00 4.16
5902 7116 2.417586 TCACATACTACAGACGACACCG 59.582 50.000 0.00 0.00 42.50 4.94
5913 7127 4.736896 GACACCGTCCGTGGCCTC 62.737 72.222 3.32 0.00 45.79 4.70
5935 7149 4.201679 CTGACCGGCGACCGCATA 62.202 66.667 9.30 1.03 46.86 3.14
5936 7150 4.501714 TGACCGGCGACCGCATAC 62.502 66.667 9.30 5.20 46.86 2.39
5940 7154 4.201679 CGGCGACCGCATACCTGA 62.202 66.667 16.47 0.00 41.17 3.86
5941 7155 2.585247 GGCGACCGCATACCTGAC 60.585 66.667 16.47 0.00 44.11 3.51
5942 7156 2.585247 GCGACCGCATACCTGACC 60.585 66.667 9.73 0.00 41.49 4.02
5943 7157 2.278596 CGACCGCATACCTGACCG 60.279 66.667 0.00 0.00 0.00 4.79
5944 7158 2.106332 GACCGCATACCTGACCGG 59.894 66.667 0.00 0.00 45.80 5.28
5945 7159 4.157120 ACCGCATACCTGACCGGC 62.157 66.667 0.00 0.00 44.29 6.13
5946 7160 4.910585 CCGCATACCTGACCGGCC 62.911 72.222 0.00 0.00 35.61 6.13
5947 7161 4.155733 CGCATACCTGACCGGCCA 62.156 66.667 0.00 0.00 35.61 5.36
5948 7162 2.510906 GCATACCTGACCGGCCAT 59.489 61.111 0.00 0.00 35.61 4.40
5949 7163 1.598130 GCATACCTGACCGGCCATC 60.598 63.158 0.00 0.00 35.61 3.51
5950 7164 1.071471 CATACCTGACCGGCCATCC 59.929 63.158 0.00 0.00 35.61 3.51
5951 7165 1.383943 ATACCTGACCGGCCATCCA 60.384 57.895 0.00 0.00 35.61 3.41
5952 7166 1.410850 ATACCTGACCGGCCATCCAG 61.411 60.000 0.00 5.90 35.61 3.86
5953 7167 4.864334 CCTGACCGGCCATCCAGC 62.864 72.222 0.00 0.00 0.00 4.85
5954 7168 4.100084 CTGACCGGCCATCCAGCA 62.100 66.667 0.00 0.00 0.00 4.41
5955 7169 3.410628 TGACCGGCCATCCAGCAT 61.411 61.111 0.00 0.00 0.00 3.79
5956 7170 2.592861 GACCGGCCATCCAGCATC 60.593 66.667 0.00 0.00 0.00 3.91
5957 7171 4.552365 ACCGGCCATCCAGCATCG 62.552 66.667 0.00 0.00 0.00 3.84
5960 7174 4.916293 GGCCATCCAGCATCGCGA 62.916 66.667 13.09 13.09 0.00 5.87
5961 7175 2.667536 GCCATCCAGCATCGCGAT 60.668 61.111 17.62 17.62 0.00 4.58
5962 7176 1.374631 GCCATCCAGCATCGCGATA 60.375 57.895 23.22 6.06 0.00 2.92
5963 7177 1.357258 GCCATCCAGCATCGCGATAG 61.357 60.000 23.22 16.71 0.00 2.08
5964 7178 0.037882 CCATCCAGCATCGCGATAGT 60.038 55.000 23.22 9.06 39.35 2.12
5965 7179 1.344458 CATCCAGCATCGCGATAGTC 58.656 55.000 23.22 13.67 39.35 2.59
5966 7180 0.109551 ATCCAGCATCGCGATAGTCG 60.110 55.000 23.22 10.68 43.89 4.18
5967 7181 1.008424 CCAGCATCGCGATAGTCGT 60.008 57.895 23.22 0.00 42.81 4.34
5968 7182 0.595053 CCAGCATCGCGATAGTCGTT 60.595 55.000 23.22 4.32 42.81 3.85
5969 7183 1.334689 CCAGCATCGCGATAGTCGTTA 60.335 52.381 23.22 0.00 42.81 3.18
5970 7184 1.709203 CAGCATCGCGATAGTCGTTAC 59.291 52.381 23.22 4.08 42.81 2.50
5971 7185 1.332686 AGCATCGCGATAGTCGTTACA 59.667 47.619 23.22 0.00 42.81 2.41
5972 7186 1.709203 GCATCGCGATAGTCGTTACAG 59.291 52.381 23.22 6.33 42.81 2.74
5973 7187 1.709203 CATCGCGATAGTCGTTACAGC 59.291 52.381 23.22 0.00 42.81 4.40
5974 7188 0.315625 TCGCGATAGTCGTTACAGCG 60.316 55.000 3.71 0.20 42.81 5.18
5975 7189 1.838102 GCGATAGTCGTTACAGCGC 59.162 57.895 0.00 0.00 42.81 5.92
5976 7190 0.864377 GCGATAGTCGTTACAGCGCA 60.864 55.000 11.47 0.00 42.81 6.09
5977 7191 0.838229 CGATAGTCGTTACAGCGCAC 59.162 55.000 11.47 0.00 34.72 5.34
5978 7192 0.838229 GATAGTCGTTACAGCGCACG 59.162 55.000 11.47 11.40 37.77 5.34
5979 7193 0.448990 ATAGTCGTTACAGCGCACGA 59.551 50.000 15.62 15.62 43.00 4.35
5981 7195 2.332159 TCGTTACAGCGCACGACA 59.668 55.556 15.62 0.00 40.43 4.35
5982 7196 1.299240 TCGTTACAGCGCACGACAA 60.299 52.632 15.62 1.44 40.43 3.18
5983 7197 1.154908 CGTTACAGCGCACGACAAC 60.155 57.895 11.47 9.19 38.76 3.32
5984 7198 1.154908 GTTACAGCGCACGACAACG 60.155 57.895 11.47 0.00 45.75 4.10
5985 7199 2.304401 TTACAGCGCACGACAACGG 61.304 57.895 11.47 0.00 44.46 4.44
5988 7202 4.351938 AGCGCACGACAACGGCTA 62.352 61.111 11.47 0.00 44.46 3.93
5989 7203 4.130281 GCGCACGACAACGGCTAC 62.130 66.667 0.30 0.00 44.46 3.58
5990 7204 2.731721 CGCACGACAACGGCTACA 60.732 61.111 0.00 0.00 44.46 2.74
5991 7205 2.851104 GCACGACAACGGCTACAC 59.149 61.111 0.00 0.00 44.46 2.90
5992 7206 1.952133 GCACGACAACGGCTACACA 60.952 57.895 0.00 0.00 44.46 3.72
5993 7207 1.850640 CACGACAACGGCTACACAC 59.149 57.895 0.00 0.00 44.46 3.82
5994 7208 1.300388 ACGACAACGGCTACACACC 60.300 57.895 0.00 0.00 44.46 4.16
6016 7230 3.691342 CGGCGGTCAGGGAGTTCA 61.691 66.667 0.00 0.00 0.00 3.18
6017 7231 2.990479 GGCGGTCAGGGAGTTCAT 59.010 61.111 0.00 0.00 0.00 2.57
6018 7232 1.450312 GGCGGTCAGGGAGTTCATG 60.450 63.158 0.00 0.00 0.00 3.07
6019 7233 1.596934 GCGGTCAGGGAGTTCATGA 59.403 57.895 0.00 0.00 0.00 3.07
6020 7234 0.179000 GCGGTCAGGGAGTTCATGAT 59.821 55.000 0.00 0.00 0.00 2.45
6021 7235 1.808133 GCGGTCAGGGAGTTCATGATC 60.808 57.143 0.00 0.00 0.00 2.92
6022 7236 1.536922 CGGTCAGGGAGTTCATGATCG 60.537 57.143 4.05 4.05 40.71 3.69
6023 7237 1.757118 GGTCAGGGAGTTCATGATCGA 59.243 52.381 0.00 0.00 0.00 3.59
6024 7238 2.482142 GGTCAGGGAGTTCATGATCGAC 60.482 54.545 0.00 0.00 0.00 4.20
6025 7239 1.757118 TCAGGGAGTTCATGATCGACC 59.243 52.381 0.00 4.05 0.00 4.79
6026 7240 0.747255 AGGGAGTTCATGATCGACCG 59.253 55.000 0.00 0.00 0.00 4.79
6027 7241 0.744874 GGGAGTTCATGATCGACCGA 59.255 55.000 0.00 0.00 0.00 4.69
6028 7242 1.136305 GGGAGTTCATGATCGACCGAA 59.864 52.381 0.00 0.00 0.00 4.30
6029 7243 2.194271 GGAGTTCATGATCGACCGAAC 58.806 52.381 0.00 9.05 38.40 3.95
6031 7245 3.152261 AGTTCATGATCGACCGAACTC 57.848 47.619 12.36 0.00 43.43 3.01
6032 7246 1.846782 GTTCATGATCGACCGAACTCG 59.153 52.381 0.00 0.00 35.86 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.739466 GCATCGAGGTGCATCTTTTCA 59.261 47.619 0.00 0.00 44.43 2.69
48 50 3.348309 CGACGAAACTACGAATCGATCA 58.652 45.455 10.55 0.00 39.73 2.92
54 56 0.244450 TGGCCGACGAAACTACGAAT 59.756 50.000 0.00 0.00 37.03 3.34
98 100 4.978083 ATTTGTGCAGAATAGCTCCAAG 57.022 40.909 0.00 0.00 34.99 3.61
113 115 6.676385 CGCGATGAATCTTACAAAATTTGTG 58.324 36.000 20.40 5.80 45.03 3.33
125 127 1.506493 GATCCTGCGCGATGAATCTT 58.494 50.000 12.10 0.00 0.00 2.40
140 142 7.975616 TCAAAGGAAATTTCAAATGATCGATCC 59.024 33.333 22.31 3.84 0.00 3.36
167 169 0.607489 CTGCAAGGTTAGGCTGCTGT 60.607 55.000 0.00 0.00 37.00 4.40
179 181 1.679139 TGTTGTGAGGAACTGCAAGG 58.321 50.000 0.00 0.00 41.55 3.61
182 184 1.872952 CGAATGTTGTGAGGAACTGCA 59.127 47.619 0.00 0.00 41.55 4.41
207 212 7.481275 ACGATCGTAGAAACCAAAAACTTAA 57.519 32.000 21.32 0.00 43.58 1.85
223 228 4.695396 AGAGAGAGAAAGCTACGATCGTA 58.305 43.478 25.37 25.37 0.00 3.43
237 242 8.735315 CAGTAGACTGTTATTCAAAGAGAGAGA 58.265 37.037 1.28 0.00 39.09 3.10
238 243 8.909708 CAGTAGACTGTTATTCAAAGAGAGAG 57.090 38.462 1.28 0.00 39.09 3.20
298 303 2.093447 ACGAATAGGAGGGCTTTGAGTG 60.093 50.000 0.00 0.00 0.00 3.51
299 304 2.168728 GACGAATAGGAGGGCTTTGAGT 59.831 50.000 0.00 0.00 0.00 3.41
504 511 0.325203 GGGACAAGAGAGAGGAGGCT 60.325 60.000 0.00 0.00 0.00 4.58
559 567 1.407162 CGGTAGAACGAGAGAGGAGGT 60.407 57.143 0.00 0.00 35.47 3.85
573 581 0.956633 GGTATCGTCCATGCGGTAGA 59.043 55.000 0.00 0.00 0.00 2.59
600 608 4.040952 ACAAGTGAGGAGAATACAGTGCTT 59.959 41.667 0.00 0.00 0.00 3.91
608 616 4.160329 ACAGTGGACAAGTGAGGAGAATA 58.840 43.478 0.00 0.00 33.05 1.75
618 626 1.299541 CGCAAAGACAGTGGACAAGT 58.700 50.000 0.00 0.00 0.00 3.16
800 808 2.028020 GCACACAGGGTTAAGAGCTAGT 60.028 50.000 0.00 0.00 0.00 2.57
840 848 4.738685 TGCCTGCATGGGATATGATTAAA 58.261 39.130 0.00 0.00 36.00 1.52
850 858 1.152376 TTTGGTTGCCTGCATGGGA 60.152 52.632 0.00 0.00 36.00 4.37
956 968 5.220777 CGACATCTGTAAGTTGTTTGGTTGT 60.221 40.000 0.00 0.00 46.23 3.32
971 983 1.690893 AGCCTCATATGCGACATCTGT 59.309 47.619 0.00 0.00 0.00 3.41
999 1017 9.920946 ATACATATCTCAACCCAGTTTAACATT 57.079 29.630 0.00 0.00 0.00 2.71
1020 1039 2.279741 CAGTACCTGCGTTGCATACAT 58.720 47.619 5.62 0.00 38.13 2.29
1047 1066 2.658268 GGCGTGTTTGGTTGCAGC 60.658 61.111 0.00 0.00 0.00 5.25
1070 1089 6.671614 TTGCTATTTGGTACTCCGTATTTG 57.328 37.500 0.00 0.00 36.30 2.32
1071 1090 7.107542 TCTTTGCTATTTGGTACTCCGTATTT 58.892 34.615 0.00 0.00 36.30 1.40
1072 1091 6.646267 TCTTTGCTATTTGGTACTCCGTATT 58.354 36.000 0.00 0.00 36.30 1.89
1073 1092 6.229936 TCTTTGCTATTTGGTACTCCGTAT 57.770 37.500 0.00 0.00 36.30 3.06
1074 1093 5.664294 TCTTTGCTATTTGGTACTCCGTA 57.336 39.130 0.00 0.00 36.30 4.02
1075 1094 4.546829 TCTTTGCTATTTGGTACTCCGT 57.453 40.909 0.00 0.00 36.30 4.69
1076 1095 5.116180 TCATCTTTGCTATTTGGTACTCCG 58.884 41.667 0.00 0.00 36.30 4.63
1077 1096 7.391148 TTTCATCTTTGCTATTTGGTACTCC 57.609 36.000 0.00 0.00 0.00 3.85
1078 1097 7.852945 CGATTTCATCTTTGCTATTTGGTACTC 59.147 37.037 0.00 0.00 0.00 2.59
1079 1098 7.201732 CCGATTTCATCTTTGCTATTTGGTACT 60.202 37.037 0.00 0.00 0.00 2.73
1080 1099 6.912591 CCGATTTCATCTTTGCTATTTGGTAC 59.087 38.462 0.00 0.00 0.00 3.34
1081 1100 6.459573 GCCGATTTCATCTTTGCTATTTGGTA 60.460 38.462 0.00 0.00 0.00 3.25
1082 1101 5.679638 GCCGATTTCATCTTTGCTATTTGGT 60.680 40.000 0.00 0.00 0.00 3.67
1083 1102 4.741676 GCCGATTTCATCTTTGCTATTTGG 59.258 41.667 0.00 0.00 0.00 3.28
1084 1103 4.438797 CGCCGATTTCATCTTTGCTATTTG 59.561 41.667 0.00 0.00 0.00 2.32
1085 1104 4.335315 TCGCCGATTTCATCTTTGCTATTT 59.665 37.500 0.00 0.00 0.00 1.40
1086 1105 3.876914 TCGCCGATTTCATCTTTGCTATT 59.123 39.130 0.00 0.00 0.00 1.73
1087 1106 3.466836 TCGCCGATTTCATCTTTGCTAT 58.533 40.909 0.00 0.00 0.00 2.97
1088 1107 2.899976 TCGCCGATTTCATCTTTGCTA 58.100 42.857 0.00 0.00 0.00 3.49
1089 1108 1.737838 TCGCCGATTTCATCTTTGCT 58.262 45.000 0.00 0.00 0.00 3.91
1090 1109 2.542766 TTCGCCGATTTCATCTTTGC 57.457 45.000 0.00 0.00 0.00 3.68
1091 1110 3.171277 GGTTTCGCCGATTTCATCTTTG 58.829 45.455 0.00 0.00 0.00 2.77
1092 1111 2.163613 GGGTTTCGCCGATTTCATCTTT 59.836 45.455 0.00 0.00 38.44 2.52
1093 1112 1.743394 GGGTTTCGCCGATTTCATCTT 59.257 47.619 0.00 0.00 38.44 2.40
1094 1113 1.379527 GGGTTTCGCCGATTTCATCT 58.620 50.000 0.00 0.00 38.44 2.90
1095 1114 0.380733 GGGGTTTCGCCGATTTCATC 59.619 55.000 0.00 0.00 38.44 2.92
1096 1115 0.034477 AGGGGTTTCGCCGATTTCAT 60.034 50.000 0.00 0.00 41.60 2.57
1097 1116 0.958382 CAGGGGTTTCGCCGATTTCA 60.958 55.000 0.00 0.00 41.60 2.69
1098 1117 1.800681 CAGGGGTTTCGCCGATTTC 59.199 57.895 0.00 0.00 41.60 2.17
1099 1118 2.340328 GCAGGGGTTTCGCCGATTT 61.340 57.895 0.00 0.00 41.60 2.17
1100 1119 2.750237 GCAGGGGTTTCGCCGATT 60.750 61.111 0.00 0.00 41.60 3.34
1101 1120 3.268103 AAGCAGGGGTTTCGCCGAT 62.268 57.895 0.00 0.00 41.60 4.18
1102 1121 3.948719 AAGCAGGGGTTTCGCCGA 61.949 61.111 0.00 0.00 41.60 5.54
1103 1122 3.737172 CAAGCAGGGGTTTCGCCG 61.737 66.667 0.00 0.00 41.60 6.46
1104 1123 4.056125 GCAAGCAGGGGTTTCGCC 62.056 66.667 0.00 0.00 36.67 5.54
1105 1124 2.548127 GATGCAAGCAGGGGTTTCGC 62.548 60.000 0.00 0.00 0.00 4.70
1106 1125 1.508088 GATGCAAGCAGGGGTTTCG 59.492 57.895 0.00 0.00 0.00 3.46
1107 1126 1.244019 ACGATGCAAGCAGGGGTTTC 61.244 55.000 0.00 0.00 0.00 2.78
1108 1127 1.228552 ACGATGCAAGCAGGGGTTT 60.229 52.632 0.00 0.00 0.00 3.27
1109 1128 1.675641 GACGATGCAAGCAGGGGTT 60.676 57.895 0.00 0.00 0.00 4.11
1150 1169 3.058708 CAGAGTAAAGTGGTCACGTCGTA 60.059 47.826 0.00 0.00 36.20 3.43
1154 1173 1.270147 GCCAGAGTAAAGTGGTCACGT 60.270 52.381 0.00 0.00 36.10 4.49
1172 1196 3.866582 CGAGGAGATGGTGGGGCC 61.867 72.222 0.00 0.00 37.90 5.80
1178 1202 3.385111 GTGGAGAATAACGAGGAGATGGT 59.615 47.826 0.00 0.00 0.00 3.55
1187 1211 1.659022 TTGGGGGTGGAGAATAACGA 58.341 50.000 0.00 0.00 0.00 3.85
1213 1237 2.180769 GCGCGATTTGGGGTTTCC 59.819 61.111 12.10 0.00 0.00 3.13
1318 1342 0.466124 GAATCACCTCGAGGAAGGGG 59.534 60.000 37.69 19.45 41.60 4.79
1361 1385 4.439057 TCGTACTACCAGATGGAAATTGC 58.561 43.478 5.72 0.00 38.94 3.56
1484 1511 2.434185 GGGTCGTCGCAGATGCAA 60.434 61.111 5.55 0.00 44.51 4.08
1598 1625 5.180868 AGCAGAGCACAAGAGATAAACAAAG 59.819 40.000 0.00 0.00 0.00 2.77
1609 1636 0.034476 CACAGGAGCAGAGCACAAGA 59.966 55.000 0.00 0.00 0.00 3.02
1660 1722 1.743394 GACTGGGGCCTATTTTCAACG 59.257 52.381 0.84 0.00 0.00 4.10
1763 1827 5.826737 CAGCATCCCTTTTAGAGAATCATGT 59.173 40.000 0.00 0.00 37.82 3.21
1803 1867 1.812571 CGTCCATTCCAAAACCAGAGG 59.187 52.381 0.00 0.00 0.00 3.69
1820 1884 5.682049 GTGAGTACACATCAACATACGTC 57.318 43.478 0.00 0.00 45.32 4.34
1838 1902 4.807834 AGCGATGATCATGTGTAAAGTGAG 59.192 41.667 14.30 0.00 0.00 3.51
1859 1923 1.009829 CCCATAACGCAGACTTCAGC 58.990 55.000 0.00 0.00 0.00 4.26
1940 2004 7.942341 TCTGTAAACTGAGGTTCAAAATGGTAT 59.058 33.333 0.00 0.00 34.14 2.73
1973 2037 9.863845 CCATTTCAACTTACGGGTTTATAAAAT 57.136 29.630 0.00 0.00 0.00 1.82
1977 2041 7.094291 CCAACCATTTCAACTTACGGGTTTATA 60.094 37.037 0.00 0.00 35.11 0.98
2024 2089 7.040062 TGGAAATACACCATAAAGAACACCAAG 60.040 37.037 0.00 0.00 32.03 3.61
2050 2115 3.792956 CGTACCGACGCTGTATTACATTT 59.207 43.478 0.00 0.00 43.21 2.32
2103 2168 3.849911 TCGCCTATGAACTCACTCAAAG 58.150 45.455 0.00 0.00 0.00 2.77
2360 2427 4.087892 CAGCACCTCTGGGACCCG 62.088 72.222 5.91 0.63 39.15 5.28
2433 2500 4.043200 GCCCGCTCTGGTGCAAAC 62.043 66.667 0.00 0.00 34.94 2.93
2487 2554 3.228749 GCAATCACACATGTCGAAACAG 58.771 45.455 0.00 0.00 39.20 3.16
2489 2556 3.228749 CTGCAATCACACATGTCGAAAC 58.771 45.455 0.00 0.00 0.00 2.78
2496 2563 3.503827 AATCAGCTGCAATCACACATG 57.496 42.857 9.47 0.00 0.00 3.21
2505 2572 2.489329 GCAGTAGGAAAATCAGCTGCAA 59.511 45.455 9.47 0.00 45.83 4.08
2543 2610 6.875195 AGCTTGTACCATTTGATTTGGAATTG 59.125 34.615 0.00 0.00 37.69 2.32
2571 2638 3.062122 TGGAATTTTGTACTCCCGGAC 57.938 47.619 0.73 0.00 0.00 4.79
2582 2649 7.245419 ACCGTTTGAATTTCTTGGAATTTTG 57.755 32.000 0.00 0.00 29.75 2.44
2627 2694 1.494721 TCTGGGTTTCTGGACAAGCTT 59.505 47.619 0.00 0.00 0.00 3.74
2693 2760 0.617535 ACGTCACCATCTCCCCATGA 60.618 55.000 0.00 0.00 0.00 3.07
2702 2769 1.549170 ACCTCTTACCACGTCACCATC 59.451 52.381 0.00 0.00 0.00 3.51
2711 2778 3.821886 AGGGCCACCTCTTACCAC 58.178 61.111 6.18 0.00 46.95 4.16
2720 2787 8.739972 CAGTATATAATTGAATTAAGGGCCACC 58.260 37.037 6.18 0.00 0.00 4.61
2724 2791 9.740710 AGGACAGTATATAATTGAATTAAGGGC 57.259 33.333 1.27 0.00 0.00 5.19
2744 2811 2.868044 GCACAGAACACCTACAGGACAG 60.868 54.545 1.29 0.00 38.94 3.51
2749 2816 3.935203 CCTAATGCACAGAACACCTACAG 59.065 47.826 0.00 0.00 0.00 2.74
2772 2839 6.345298 ACAACAAATTTCTCCCAACGAAAAT 58.655 32.000 0.00 0.00 34.42 1.82
2778 2845 5.221422 TGGATGACAACAAATTTCTCCCAAC 60.221 40.000 0.00 0.00 0.00 3.77
2833 2901 5.818678 TCCCTGTAATTACAAGTGTCAGT 57.181 39.130 18.55 0.00 35.50 3.41
2836 2904 6.407202 ACTCATCCCTGTAATTACAAGTGTC 58.593 40.000 18.55 0.00 35.50 3.67
2850 2918 3.515562 AGCCCTAGAATACTCATCCCTG 58.484 50.000 0.00 0.00 0.00 4.45
2851 2919 3.933239 AGCCCTAGAATACTCATCCCT 57.067 47.619 0.00 0.00 0.00 4.20
2929 2997 7.060600 TGACGAAATGTTGACAATCATAGAC 57.939 36.000 0.00 0.00 0.00 2.59
2933 3001 6.912082 TGAATGACGAAATGTTGACAATCAT 58.088 32.000 0.00 0.00 0.00 2.45
3393 3463 8.284945 TCCTTTCTTATCACTTCCAATTGATG 57.715 34.615 7.12 0.00 34.28 3.07
3741 3812 5.411831 AATCACTCTGATGCTGACAGTAA 57.588 39.130 3.99 0.00 37.15 2.24
3826 3897 2.306847 ACTTGGGAACGCTGTTGAAAT 58.693 42.857 0.00 0.00 0.00 2.17
4094 4165 9.700554 ATAGATGAATGATATATCAGGGGGAAT 57.299 33.333 19.73 8.24 40.64 3.01
4192 4263 3.936372 TCAAGTGGGTCTTCTCTTACG 57.064 47.619 0.00 0.00 33.63 3.18
4198 4269 9.588096 AGTAAAAATAAATCAAGTGGGTCTTCT 57.412 29.630 0.00 0.00 33.63 2.85
4208 4279 9.816354 CCATAACCCCAGTAAAAATAAATCAAG 57.184 33.333 0.00 0.00 0.00 3.02
4506 4586 6.325919 TCCAATTTGTATTTTTCTGAGCGT 57.674 33.333 0.00 0.00 0.00 5.07
4725 4805 8.070034 TCGTCTTACATTTTAATACAGAGGGA 57.930 34.615 0.00 0.00 0.00 4.20
4887 4974 2.673043 GCATCTGCCAAACATGAGGTTG 60.673 50.000 0.00 0.50 35.81 3.77
4916 5003 1.266178 TCATCTCTGCGAGGGTTTCA 58.734 50.000 5.87 0.00 0.00 2.69
4995 5082 4.215827 CGATACACGAAGTAGAAGGGCTAT 59.784 45.833 0.00 0.00 41.61 2.97
5018 5105 7.093596 ACCAGTTACCACTACAGTAAGTTATCC 60.094 40.741 0.00 0.00 32.31 2.59
5039 5126 3.561143 TCCACAATAGCAAAACACCAGT 58.439 40.909 0.00 0.00 0.00 4.00
5128 5215 2.436417 TCCATAGTGGCAAGAAAGTGC 58.564 47.619 0.00 0.00 44.14 4.40
5146 5233 3.748568 GTGAAGTGACACCATCTTCTTCC 59.251 47.826 0.84 0.00 37.76 3.46
5226 5315 9.685828 GGCAGATTTCAGAAACTATAGTACTAG 57.314 37.037 5.65 0.00 0.00 2.57
5283 5372 5.748402 TCATCTATGTTCTTCAACCATGCT 58.252 37.500 0.00 0.00 0.00 3.79
5334 5423 5.356426 ACAATTAAGTCAAAGGTTTGCACC 58.644 37.500 0.00 0.00 44.67 5.01
5368 5457 9.691362 GTGCAACAAAAATAAAGGAGAAGAATA 57.309 29.630 0.00 0.00 36.32 1.75
5404 5493 5.526115 ACAAGAATGATGTGCAAGTTTCTG 58.474 37.500 0.00 0.00 0.00 3.02
5457 5546 2.868899 AGGGCTGAAAAAGAGGAACAG 58.131 47.619 0.00 0.00 0.00 3.16
5462 5551 1.000171 GCACAAGGGCTGAAAAAGAGG 60.000 52.381 0.00 0.00 0.00 3.69
5499 6048 7.151976 CGAGGTTAATTCTTTGGTGGATTTTT 58.848 34.615 0.00 0.00 0.00 1.94
5500 6049 6.295067 CCGAGGTTAATTCTTTGGTGGATTTT 60.295 38.462 0.00 0.00 0.00 1.82
5502 6051 4.705023 CCGAGGTTAATTCTTTGGTGGATT 59.295 41.667 0.00 0.00 0.00 3.01
5503 6052 4.270008 CCGAGGTTAATTCTTTGGTGGAT 58.730 43.478 0.00 0.00 0.00 3.41
5549 6763 4.142403 TGCACAAGTTCAAGAAAGAGTTGG 60.142 41.667 0.00 0.00 0.00 3.77
5598 6812 3.118592 GCCTATGCTTCTAGTCAAGGTGT 60.119 47.826 0.00 0.00 33.53 4.16
5599 6813 3.462021 GCCTATGCTTCTAGTCAAGGTG 58.538 50.000 0.00 0.00 33.53 4.00
5600 6814 2.101582 CGCCTATGCTTCTAGTCAAGGT 59.898 50.000 0.00 0.00 34.43 3.50
5601 6815 2.546795 CCGCCTATGCTTCTAGTCAAGG 60.547 54.545 0.00 0.00 34.43 3.61
5603 6817 1.412710 CCCGCCTATGCTTCTAGTCAA 59.587 52.381 0.00 0.00 34.43 3.18
5605 6819 1.329256 TCCCGCCTATGCTTCTAGTC 58.671 55.000 0.00 0.00 34.43 2.59
5606 6820 2.016905 ATCCCGCCTATGCTTCTAGT 57.983 50.000 0.00 0.00 34.43 2.57
5607 6821 3.739519 GCATATCCCGCCTATGCTTCTAG 60.740 52.174 12.23 0.00 45.13 2.43
5608 6822 2.168521 GCATATCCCGCCTATGCTTCTA 59.831 50.000 12.23 0.00 45.13 2.10
5609 6823 1.065854 GCATATCCCGCCTATGCTTCT 60.066 52.381 12.23 0.00 45.13 2.85
5610 6824 1.373570 GCATATCCCGCCTATGCTTC 58.626 55.000 12.23 0.00 45.13 3.86
5611 6825 3.558674 GCATATCCCGCCTATGCTT 57.441 52.632 12.23 0.00 45.13 3.91
5614 6828 1.086067 CGCAGCATATCCCGCCTATG 61.086 60.000 0.00 0.00 0.00 2.23
5615 6829 1.219124 CGCAGCATATCCCGCCTAT 59.781 57.895 0.00 0.00 0.00 2.57
5616 6830 2.656646 CGCAGCATATCCCGCCTA 59.343 61.111 0.00 0.00 0.00 3.93
5629 6843 5.398169 TCTTAATTTGTGTTTATGGCGCAG 58.602 37.500 10.83 0.00 0.00 5.18
5630 6844 5.378292 TCTTAATTTGTGTTTATGGCGCA 57.622 34.783 10.83 0.00 0.00 6.09
5631 6845 6.698359 TTTCTTAATTTGTGTTTATGGCGC 57.302 33.333 0.00 0.00 0.00 6.53
5658 6872 9.373603 CCTTTTTGCATGAATATTGATTCTTCA 57.626 29.630 0.00 0.00 41.87 3.02
5659 6873 9.590451 TCCTTTTTGCATGAATATTGATTCTTC 57.410 29.630 0.00 0.00 41.87 2.87
5660 6874 9.947433 TTCCTTTTTGCATGAATATTGATTCTT 57.053 25.926 0.00 0.00 41.87 2.52
5661 6875 9.947433 TTTCCTTTTTGCATGAATATTGATTCT 57.053 25.926 0.00 0.00 41.87 2.40
5662 6876 9.977762 GTTTCCTTTTTGCATGAATATTGATTC 57.022 29.630 0.00 0.00 41.72 2.52
5663 6877 9.504708 TGTTTCCTTTTTGCATGAATATTGATT 57.495 25.926 0.00 0.00 0.00 2.57
5664 6878 8.938906 GTGTTTCCTTTTTGCATGAATATTGAT 58.061 29.630 0.00 0.00 0.00 2.57
5665 6879 7.116090 CGTGTTTCCTTTTTGCATGAATATTGA 59.884 33.333 0.00 0.00 0.00 2.57
5666 6880 7.228840 CGTGTTTCCTTTTTGCATGAATATTG 58.771 34.615 0.00 0.00 0.00 1.90
5667 6881 6.128580 GCGTGTTTCCTTTTTGCATGAATATT 60.129 34.615 0.00 0.00 0.00 1.28
5668 6882 5.348451 GCGTGTTTCCTTTTTGCATGAATAT 59.652 36.000 0.00 0.00 0.00 1.28
5669 6883 4.683781 GCGTGTTTCCTTTTTGCATGAATA 59.316 37.500 0.00 0.00 0.00 1.75
5670 6884 3.494251 GCGTGTTTCCTTTTTGCATGAAT 59.506 39.130 0.00 0.00 0.00 2.57
5671 6885 2.863137 GCGTGTTTCCTTTTTGCATGAA 59.137 40.909 0.00 0.00 0.00 2.57
5672 6886 2.468831 GCGTGTTTCCTTTTTGCATGA 58.531 42.857 0.00 0.00 0.00 3.07
5673 6887 1.189884 CGCGTGTTTCCTTTTTGCATG 59.810 47.619 0.00 0.00 0.00 4.06
5674 6888 1.202359 ACGCGTGTTTCCTTTTTGCAT 60.202 42.857 12.93 0.00 0.00 3.96
5675 6889 0.171455 ACGCGTGTTTCCTTTTTGCA 59.829 45.000 12.93 0.00 0.00 4.08
5676 6890 1.006494 CAACGCGTGTTTCCTTTTTGC 60.006 47.619 14.98 0.00 35.72 3.68
5677 6891 2.255316 ACAACGCGTGTTTCCTTTTTG 58.745 42.857 14.98 5.48 37.01 2.44
5678 6892 2.640346 ACAACGCGTGTTTCCTTTTT 57.360 40.000 14.98 0.00 37.01 1.94
5679 6893 3.761311 TTACAACGCGTGTTTCCTTTT 57.239 38.095 14.98 0.00 41.98 2.27
5680 6894 3.687200 CTTTACAACGCGTGTTTCCTTT 58.313 40.909 14.98 0.00 41.98 3.11
5681 6895 2.540157 GCTTTACAACGCGTGTTTCCTT 60.540 45.455 14.98 0.00 41.98 3.36
5682 6896 1.003223 GCTTTACAACGCGTGTTTCCT 60.003 47.619 14.98 0.00 41.98 3.36
5683 6897 1.268133 TGCTTTACAACGCGTGTTTCC 60.268 47.619 14.98 0.00 41.98 3.13
5684 6898 2.093972 TGCTTTACAACGCGTGTTTC 57.906 45.000 14.98 0.00 41.98 2.78
5685 6899 2.766970 ATGCTTTACAACGCGTGTTT 57.233 40.000 14.98 1.98 41.98 2.83
5686 6900 3.881780 TTATGCTTTACAACGCGTGTT 57.118 38.095 14.98 8.91 41.98 3.32
5687 6901 3.881780 TTTATGCTTTACAACGCGTGT 57.118 38.095 14.98 15.88 44.82 4.49
5688 6902 6.739100 TCTTAATTTATGCTTTACAACGCGTG 59.261 34.615 14.98 10.05 0.00 5.34
5689 6903 6.833839 TCTTAATTTATGCTTTACAACGCGT 58.166 32.000 5.58 5.58 0.00 6.01
5690 6904 7.713792 TTCTTAATTTATGCTTTACAACGCG 57.286 32.000 3.53 3.53 0.00 6.01
5779 6993 8.567948 ACGATCTTGTACTTTGTCATTTCAAAT 58.432 29.630 0.00 0.00 36.83 2.32
5780 6994 7.925993 ACGATCTTGTACTTTGTCATTTCAAA 58.074 30.769 0.00 0.00 36.18 2.69
5781 6995 7.490962 ACGATCTTGTACTTTGTCATTTCAA 57.509 32.000 0.00 0.00 0.00 2.69
5782 6996 7.225734 TGAACGATCTTGTACTTTGTCATTTCA 59.774 33.333 0.00 0.00 0.00 2.69
5783 6997 7.572759 TGAACGATCTTGTACTTTGTCATTTC 58.427 34.615 0.00 0.00 0.00 2.17
5784 6998 7.490962 TGAACGATCTTGTACTTTGTCATTT 57.509 32.000 0.00 0.00 0.00 2.32
5785 6999 7.441157 TCTTGAACGATCTTGTACTTTGTCATT 59.559 33.333 0.00 0.00 0.00 2.57
5786 7000 6.929049 TCTTGAACGATCTTGTACTTTGTCAT 59.071 34.615 0.00 0.00 0.00 3.06
5787 7001 6.200286 GTCTTGAACGATCTTGTACTTTGTCA 59.800 38.462 0.00 0.00 0.00 3.58
5788 7002 6.421202 AGTCTTGAACGATCTTGTACTTTGTC 59.579 38.462 0.00 0.00 0.00 3.18
5789 7003 6.281405 AGTCTTGAACGATCTTGTACTTTGT 58.719 36.000 0.00 0.00 0.00 2.83
5790 7004 6.771188 AGTCTTGAACGATCTTGTACTTTG 57.229 37.500 0.00 0.00 0.00 2.77
5791 7005 6.867293 GGTAGTCTTGAACGATCTTGTACTTT 59.133 38.462 0.00 0.00 0.00 2.66
5792 7006 6.388278 GGTAGTCTTGAACGATCTTGTACTT 58.612 40.000 0.00 0.00 0.00 2.24
5793 7007 5.391736 CGGTAGTCTTGAACGATCTTGTACT 60.392 44.000 0.00 0.00 0.00 2.73
5794 7008 4.792189 CGGTAGTCTTGAACGATCTTGTAC 59.208 45.833 0.00 0.00 0.00 2.90
5795 7009 4.696877 TCGGTAGTCTTGAACGATCTTGTA 59.303 41.667 0.00 0.00 0.00 2.41
5796 7010 3.504906 TCGGTAGTCTTGAACGATCTTGT 59.495 43.478 0.00 0.00 0.00 3.16
5797 7011 4.092771 TCGGTAGTCTTGAACGATCTTG 57.907 45.455 0.00 0.00 0.00 3.02
5798 7012 4.778534 TTCGGTAGTCTTGAACGATCTT 57.221 40.909 0.00 0.00 33.26 2.40
5799 7013 4.458295 TCTTTCGGTAGTCTTGAACGATCT 59.542 41.667 0.00 0.00 33.26 2.75
5800 7014 4.730657 TCTTTCGGTAGTCTTGAACGATC 58.269 43.478 0.00 0.00 33.26 3.69
5801 7015 4.778534 TCTTTCGGTAGTCTTGAACGAT 57.221 40.909 0.00 0.00 33.26 3.73
5802 7016 4.778534 ATCTTTCGGTAGTCTTGAACGA 57.221 40.909 0.00 0.00 0.00 3.85
5803 7017 5.638783 ACTATCTTTCGGTAGTCTTGAACG 58.361 41.667 0.00 0.00 0.00 3.95
5804 7018 9.881529 CTATACTATCTTTCGGTAGTCTTGAAC 57.118 37.037 0.00 0.00 33.48 3.18
5805 7019 9.842775 TCTATACTATCTTTCGGTAGTCTTGAA 57.157 33.333 0.00 0.00 33.48 2.69
5809 7023 9.585099 CGTATCTATACTATCTTTCGGTAGTCT 57.415 37.037 0.00 0.00 33.48 3.24
5810 7024 9.579768 TCGTATCTATACTATCTTTCGGTAGTC 57.420 37.037 0.00 0.00 33.48 2.59
5811 7025 9.935241 TTCGTATCTATACTATCTTTCGGTAGT 57.065 33.333 0.00 0.00 35.47 2.73
5813 7027 9.935241 ACTTCGTATCTATACTATCTTTCGGTA 57.065 33.333 0.00 0.00 0.00 4.02
5814 7028 8.845413 ACTTCGTATCTATACTATCTTTCGGT 57.155 34.615 0.00 0.00 0.00 4.69
5815 7029 8.933807 TGACTTCGTATCTATACTATCTTTCGG 58.066 37.037 0.00 0.00 0.00 4.30
5829 7043 9.688091 ATGTGAGGTATATATGACTTCGTATCT 57.312 33.333 0.00 0.00 31.14 1.98
5832 7046 9.955102 AGTATGTGAGGTATATATGACTTCGTA 57.045 33.333 0.00 0.00 0.00 3.43
5833 7047 8.865420 AGTATGTGAGGTATATATGACTTCGT 57.135 34.615 0.00 0.00 0.00 3.85
5872 7086 7.758528 GTCGTCTGTAGTATGTGAGGTATTTTT 59.241 37.037 0.00 0.00 0.00 1.94
5873 7087 7.094075 TGTCGTCTGTAGTATGTGAGGTATTTT 60.094 37.037 0.00 0.00 0.00 1.82
5874 7088 6.376299 TGTCGTCTGTAGTATGTGAGGTATTT 59.624 38.462 0.00 0.00 0.00 1.40
5875 7089 5.884232 TGTCGTCTGTAGTATGTGAGGTATT 59.116 40.000 0.00 0.00 0.00 1.89
5876 7090 5.296283 GTGTCGTCTGTAGTATGTGAGGTAT 59.704 44.000 0.00 0.00 0.00 2.73
5877 7091 4.633126 GTGTCGTCTGTAGTATGTGAGGTA 59.367 45.833 0.00 0.00 0.00 3.08
5878 7092 3.439476 GTGTCGTCTGTAGTATGTGAGGT 59.561 47.826 0.00 0.00 0.00 3.85
5879 7093 3.181499 GGTGTCGTCTGTAGTATGTGAGG 60.181 52.174 0.00 0.00 0.00 3.86
5880 7094 3.485381 CGGTGTCGTCTGTAGTATGTGAG 60.485 52.174 0.00 0.00 0.00 3.51
5881 7095 2.417586 CGGTGTCGTCTGTAGTATGTGA 59.582 50.000 0.00 0.00 0.00 3.58
5882 7096 2.782163 CGGTGTCGTCTGTAGTATGTG 58.218 52.381 0.00 0.00 0.00 3.21
5896 7110 4.736896 GAGGCCACGGACGGTGTC 62.737 72.222 5.01 0.00 45.52 3.67
5924 7138 2.585247 GTCAGGTATGCGGTCGCC 60.585 66.667 12.94 0.00 41.09 5.54
5925 7139 2.585247 GGTCAGGTATGCGGTCGC 60.585 66.667 8.54 8.54 42.35 5.19
5926 7140 2.278596 CGGTCAGGTATGCGGTCG 60.279 66.667 0.00 0.00 0.00 4.79
5927 7141 2.106332 CCGGTCAGGTATGCGGTC 59.894 66.667 0.00 0.00 34.51 4.79
5928 7142 4.157120 GCCGGTCAGGTATGCGGT 62.157 66.667 1.90 0.00 43.70 5.68
5929 7143 4.910585 GGCCGGTCAGGTATGCGG 62.911 72.222 0.00 0.00 43.70 5.69
5930 7144 3.460672 ATGGCCGGTCAGGTATGCG 62.461 63.158 16.89 0.00 43.70 4.73
5931 7145 1.598130 GATGGCCGGTCAGGTATGC 60.598 63.158 16.89 0.00 43.70 3.14
5932 7146 1.071471 GGATGGCCGGTCAGGTATG 59.929 63.158 16.89 0.00 43.70 2.39
5933 7147 1.383943 TGGATGGCCGGTCAGGTAT 60.384 57.895 16.89 0.00 43.70 2.73
5934 7148 2.039787 TGGATGGCCGGTCAGGTA 59.960 61.111 16.89 0.00 43.70 3.08
5935 7149 3.402681 CTGGATGGCCGGTCAGGT 61.403 66.667 16.89 0.00 43.70 4.00
5936 7150 4.864334 GCTGGATGGCCGGTCAGG 62.864 72.222 16.89 5.80 42.93 3.86
5937 7151 3.411114 ATGCTGGATGGCCGGTCAG 62.411 63.158 16.89 10.33 42.93 3.51
5938 7152 3.405093 GATGCTGGATGGCCGGTCA 62.405 63.158 13.22 13.22 42.93 4.02
5939 7153 2.592861 GATGCTGGATGGCCGGTC 60.593 66.667 0.00 0.00 42.93 4.79
5940 7154 4.552365 CGATGCTGGATGGCCGGT 62.552 66.667 1.90 0.00 42.93 5.28
5943 7157 2.786539 TATCGCGATGCTGGATGGCC 62.787 60.000 31.05 0.00 32.29 5.36
5944 7158 1.357258 CTATCGCGATGCTGGATGGC 61.357 60.000 31.05 6.09 32.61 4.40
5945 7159 0.037882 ACTATCGCGATGCTGGATGG 60.038 55.000 31.05 8.68 0.00 3.51
5946 7160 1.344458 GACTATCGCGATGCTGGATG 58.656 55.000 31.05 13.58 0.00 3.51
5947 7161 0.109551 CGACTATCGCGATGCTGGAT 60.110 55.000 31.05 6.61 31.14 3.41
5948 7162 1.282875 CGACTATCGCGATGCTGGA 59.717 57.895 31.05 10.18 31.14 3.86
5949 7163 0.595053 AACGACTATCGCGATGCTGG 60.595 55.000 31.05 18.87 45.12 4.85
5950 7164 1.709203 GTAACGACTATCGCGATGCTG 59.291 52.381 31.05 21.34 45.12 4.41
5951 7165 1.332686 TGTAACGACTATCGCGATGCT 59.667 47.619 31.05 15.61 45.12 3.79
5952 7166 1.709203 CTGTAACGACTATCGCGATGC 59.291 52.381 31.05 18.21 45.12 3.91
5953 7167 1.709203 GCTGTAACGACTATCGCGATG 59.291 52.381 31.05 21.60 45.12 3.84
5954 7168 1.659491 CGCTGTAACGACTATCGCGAT 60.659 52.381 26.78 26.78 45.12 4.58
5955 7169 0.315625 CGCTGTAACGACTATCGCGA 60.316 55.000 13.09 13.09 45.12 5.87
5956 7170 1.852989 GCGCTGTAACGACTATCGCG 61.853 60.000 0.00 0.00 45.12 5.87
5957 7171 0.864377 TGCGCTGTAACGACTATCGC 60.864 55.000 9.73 0.00 45.12 4.58
5958 7172 0.838229 GTGCGCTGTAACGACTATCG 59.162 55.000 9.73 0.00 46.93 2.92
5959 7173 0.838229 CGTGCGCTGTAACGACTATC 59.162 55.000 12.12 0.00 42.32 2.08
5960 7174 0.448990 TCGTGCGCTGTAACGACTAT 59.551 50.000 15.62 0.00 43.40 2.12
5961 7175 1.868306 TCGTGCGCTGTAACGACTA 59.132 52.632 15.62 0.00 43.40 2.59
5962 7176 2.640989 TCGTGCGCTGTAACGACT 59.359 55.556 15.62 0.00 43.40 4.18
5964 7178 1.299240 TTGTCGTGCGCTGTAACGA 60.299 52.632 15.62 15.62 45.86 3.85
5965 7179 1.154908 GTTGTCGTGCGCTGTAACG 60.155 57.895 9.73 10.68 41.11 3.18
5966 7180 1.154908 CGTTGTCGTGCGCTGTAAC 60.155 57.895 9.73 10.21 0.00 2.50
5967 7181 2.304401 CCGTTGTCGTGCGCTGTAA 61.304 57.895 9.73 0.00 35.01 2.41
5968 7182 2.731721 CCGTTGTCGTGCGCTGTA 60.732 61.111 9.73 0.00 35.01 2.74
5971 7185 4.351938 TAGCCGTTGTCGTGCGCT 62.352 61.111 9.73 0.00 37.94 5.92
5972 7186 4.130281 GTAGCCGTTGTCGTGCGC 62.130 66.667 0.00 0.00 37.94 6.09
5973 7187 2.731721 TGTAGCCGTTGTCGTGCG 60.732 61.111 0.00 0.00 37.94 5.34
5974 7188 1.952133 TGTGTAGCCGTTGTCGTGC 60.952 57.895 0.00 0.00 34.96 5.34
5975 7189 1.554042 GGTGTGTAGCCGTTGTCGTG 61.554 60.000 0.00 0.00 35.01 4.35
5976 7190 1.300388 GGTGTGTAGCCGTTGTCGT 60.300 57.895 0.00 0.00 35.01 4.34
5977 7191 2.369629 CGGTGTGTAGCCGTTGTCG 61.370 63.158 0.00 0.00 43.84 4.35
5978 7192 3.545911 CGGTGTGTAGCCGTTGTC 58.454 61.111 0.00 0.00 43.84 3.18
5999 7213 3.019003 ATGAACTCCCTGACCGCCG 62.019 63.158 0.00 0.00 0.00 6.46
6000 7214 1.450312 CATGAACTCCCTGACCGCC 60.450 63.158 0.00 0.00 0.00 6.13
6001 7215 0.179000 ATCATGAACTCCCTGACCGC 59.821 55.000 0.00 0.00 0.00 5.68
6002 7216 1.536922 CGATCATGAACTCCCTGACCG 60.537 57.143 0.00 0.00 0.00 4.79
6003 7217 1.757118 TCGATCATGAACTCCCTGACC 59.243 52.381 0.00 0.00 0.00 4.02
6004 7218 2.482142 GGTCGATCATGAACTCCCTGAC 60.482 54.545 0.00 0.00 0.00 3.51
6005 7219 1.757118 GGTCGATCATGAACTCCCTGA 59.243 52.381 0.00 0.00 0.00 3.86
6006 7220 1.536922 CGGTCGATCATGAACTCCCTG 60.537 57.143 0.00 0.00 0.00 4.45
6007 7221 0.747255 CGGTCGATCATGAACTCCCT 59.253 55.000 0.00 0.00 0.00 4.20
6008 7222 0.744874 TCGGTCGATCATGAACTCCC 59.255 55.000 0.00 0.00 0.00 4.30
6009 7223 2.159226 AGTTCGGTCGATCATGAACTCC 60.159 50.000 11.76 1.87 45.79 3.85
6010 7224 3.152261 AGTTCGGTCGATCATGAACTC 57.848 47.619 11.76 0.00 45.79 3.01
6012 7226 1.846782 CGAGTTCGGTCGATCATGAAC 59.153 52.381 0.00 8.02 42.85 3.18
6013 7227 2.188837 CGAGTTCGGTCGATCATGAA 57.811 50.000 0.00 0.00 42.85 2.57
6014 7228 3.918102 CGAGTTCGGTCGATCATGA 57.082 52.632 0.00 0.00 42.85 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.