Multiple sequence alignment - TraesCS1B01G107700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G107700 chr1B 100.000 4532 0 0 1 4532 119775999 119771468 0.000000e+00 8370.0
1 TraesCS1B01G107700 chr1B 74.411 297 58 16 2968 3257 608951518 608951803 1.330000e-20 111.0
2 TraesCS1B01G107700 chr1B 78.616 159 28 6 1552 1707 91882015 91881860 2.880000e-17 100.0
3 TraesCS1B01G107700 chr1B 81.102 127 20 4 1880 2004 608950395 608950519 1.040000e-16 99.0
4 TraesCS1B01G107700 chr1B 78.519 135 25 4 1868 2000 91881814 91881682 8.080000e-13 86.1
5 TraesCS1B01G107700 chr1A 88.595 1850 94 53 404 2237 77076915 77075167 0.000000e+00 2139.0
6 TraesCS1B01G107700 chr1A 95.216 857 39 2 3678 4532 488629127 488629983 0.000000e+00 1354.0
7 TraesCS1B01G107700 chr1A 91.979 773 47 5 2598 3358 77074931 77074162 0.000000e+00 1070.0
8 TraesCS1B01G107700 chr1A 89.801 402 41 0 7 408 77077500 77077099 2.420000e-142 516.0
9 TraesCS1B01G107700 chr1A 90.196 255 17 7 2323 2572 77075170 77074919 4.370000e-85 326.0
10 TraesCS1B01G107700 chr1A 97.391 115 3 0 3559 3673 488628960 488629074 3.580000e-46 196.0
11 TraesCS1B01G107700 chr1A 93.443 122 8 0 3415 3536 77074156 77074035 1.000000e-41 182.0
12 TraesCS1B01G107700 chr1A 75.503 298 55 15 2967 3257 541772133 541772419 3.680000e-26 130.0
13 TraesCS1B01G107700 chr1A 79.856 139 26 2 1531 1668 56337699 56337836 2.880000e-17 100.0
14 TraesCS1B01G107700 chr1A 81.102 127 20 4 1880 2004 541770987 541771111 1.040000e-16 99.0
15 TraesCS1B01G107700 chr4A 95.093 856 41 1 3678 4532 626282049 626282904 0.000000e+00 1347.0
16 TraesCS1B01G107700 chr4A 94.749 857 43 2 3678 4532 666017501 666018357 0.000000e+00 1332.0
17 TraesCS1B01G107700 chr4A 94.731 854 41 3 3681 4532 584050657 584049806 0.000000e+00 1325.0
18 TraesCS1B01G107700 chr4A 97.391 115 3 0 3559 3673 626281882 626281996 3.580000e-46 196.0
19 TraesCS1B01G107700 chr4A 93.860 114 7 0 3558 3671 666017333 666017446 6.030000e-39 172.0
20 TraesCS1B01G107700 chr3B 94.632 857 44 2 3678 4532 764238067 764238923 0.000000e+00 1327.0
21 TraesCS1B01G107700 chr3B 94.152 855 47 3 3681 4532 465282430 465281576 0.000000e+00 1299.0
22 TraesCS1B01G107700 chr3B 95.652 115 5 0 3559 3673 465336444 465336330 7.740000e-43 185.0
23 TraesCS1B01G107700 chr3B 93.913 115 7 0 3559 3673 465282600 465282486 1.680000e-39 174.0
24 TraesCS1B01G107700 chr7A 94.614 854 44 2 3681 4532 727204539 727203686 0.000000e+00 1321.0
25 TraesCS1B01G107700 chr7A 94.643 112 6 0 3562 3673 727204706 727204595 1.680000e-39 174.0
26 TraesCS1B01G107700 chr7A 85.217 115 15 2 1545 1658 96051658 96051545 2.860000e-22 117.0
27 TraesCS1B01G107700 chr5B 94.406 858 45 3 3678 4532 457932046 457932903 0.000000e+00 1315.0
28 TraesCS1B01G107700 chr5B 96.522 115 4 0 3559 3673 458049565 458049451 1.660000e-44 191.0
29 TraesCS1B01G107700 chr5B 93.913 115 7 0 3559 3673 457931879 457931993 1.680000e-39 174.0
30 TraesCS1B01G107700 chr5B 78.358 134 25 4 1880 2011 314193462 314193331 2.910000e-12 84.2
31 TraesCS1B01G107700 chr5B 78.788 132 22 6 1880 2008 314277201 314277329 2.910000e-12 84.2
32 TraesCS1B01G107700 chr6B 94.262 854 47 2 3681 4532 576443528 576442675 0.000000e+00 1304.0
33 TraesCS1B01G107700 chr1D 93.732 702 26 8 1442 2142 76458426 76457742 0.000000e+00 1037.0
34 TraesCS1B01G107700 chr1D 93.750 688 28 7 768 1450 76459283 76458606 0.000000e+00 1018.0
35 TraesCS1B01G107700 chr1D 87.126 870 53 21 2144 2973 76457559 76456709 0.000000e+00 931.0
36 TraesCS1B01G107700 chr1D 94.746 590 27 4 1 588 76472772 76472185 0.000000e+00 915.0
37 TraesCS1B01G107700 chr1D 88.656 573 31 17 2967 3534 76456613 76456070 0.000000e+00 667.0
38 TraesCS1B01G107700 chr1D 86.765 204 15 4 577 772 76460094 76459895 2.750000e-52 217.0
39 TraesCS1B01G107700 chr1D 75.758 297 54 16 2968 3257 445590198 445590483 2.840000e-27 134.0
40 TraesCS1B01G107700 chr1D 82.645 121 19 2 1552 1671 56429714 56429595 6.200000e-19 106.0
41 TraesCS1B01G107700 chr1D 81.890 127 19 4 1880 2004 445589090 445589214 2.230000e-18 104.0
42 TraesCS1B01G107700 chr2B 96.364 110 4 0 3564 3673 405477690 405477581 1.000000e-41 182.0
43 TraesCS1B01G107700 chr7D 84.348 115 16 2 1545 1658 93033667 93033554 1.330000e-20 111.0
44 TraesCS1B01G107700 chr3D 80.000 155 27 4 1543 1695 120148549 120148397 1.330000e-20 111.0
45 TraesCS1B01G107700 chr3A 80.000 155 27 4 1543 1695 127090457 127090305 1.330000e-20 111.0
46 TraesCS1B01G107700 chrUn 96.610 59 1 1 455 512 182441324 182441382 3.730000e-16 97.1
47 TraesCS1B01G107700 chrUn 96.610 59 1 1 455 512 222870957 222871015 3.730000e-16 97.1
48 TraesCS1B01G107700 chrUn 96.610 59 1 1 455 512 429996048 429996106 3.730000e-16 97.1
49 TraesCS1B01G107700 chrUn 96.610 59 1 1 455 512 449891770 449891828 3.730000e-16 97.1
50 TraesCS1B01G107700 chr6D 96.610 59 1 1 455 512 57916819 57916877 3.730000e-16 97.1
51 TraesCS1B01G107700 chr6D 96.610 59 1 1 455 512 108515707 108515765 3.730000e-16 97.1
52 TraesCS1B01G107700 chr6D 100.000 28 0 0 2204 2231 426336791 426336818 8.000000e-03 52.8
53 TraesCS1B01G107700 chr4D 96.610 59 1 1 455 512 417664820 417664762 3.730000e-16 97.1
54 TraesCS1B01G107700 chr4D 96.610 59 1 1 455 512 451004149 451004207 3.730000e-16 97.1
55 TraesCS1B01G107700 chr5A 78.788 132 22 6 1880 2008 365600023 365600151 2.910000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G107700 chr1B 119771468 119775999 4531 True 8370.0 8370 100.0000 1 4532 1 chr1B.!!$R1 4531
1 TraesCS1B01G107700 chr1A 77074035 77077500 3465 True 846.6 2139 90.8028 7 3536 5 chr1A.!!$R1 3529
2 TraesCS1B01G107700 chr1A 488628960 488629983 1023 False 775.0 1354 96.3035 3559 4532 2 chr1A.!!$F2 973
3 TraesCS1B01G107700 chr4A 584049806 584050657 851 True 1325.0 1325 94.7310 3681 4532 1 chr4A.!!$R1 851
4 TraesCS1B01G107700 chr4A 626281882 626282904 1022 False 771.5 1347 96.2420 3559 4532 2 chr4A.!!$F1 973
5 TraesCS1B01G107700 chr4A 666017333 666018357 1024 False 752.0 1332 94.3045 3558 4532 2 chr4A.!!$F2 974
6 TraesCS1B01G107700 chr3B 764238067 764238923 856 False 1327.0 1327 94.6320 3678 4532 1 chr3B.!!$F1 854
7 TraesCS1B01G107700 chr3B 465281576 465282600 1024 True 736.5 1299 94.0325 3559 4532 2 chr3B.!!$R2 973
8 TraesCS1B01G107700 chr7A 727203686 727204706 1020 True 747.5 1321 94.6285 3562 4532 2 chr7A.!!$R2 970
9 TraesCS1B01G107700 chr5B 457931879 457932903 1024 False 744.5 1315 94.1595 3559 4532 2 chr5B.!!$F2 973
10 TraesCS1B01G107700 chr6B 576442675 576443528 853 True 1304.0 1304 94.2620 3681 4532 1 chr6B.!!$R1 851
11 TraesCS1B01G107700 chr1D 76472185 76472772 587 True 915.0 915 94.7460 1 588 1 chr1D.!!$R2 587
12 TraesCS1B01G107700 chr1D 76456070 76460094 4024 True 774.0 1037 90.0058 577 3534 5 chr1D.!!$R3 2957

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 873 0.878523 TTCTGTGCGACGGTTTCCTG 60.879 55.000 0.0 0.0 0.0 3.86 F
2514 3735 0.465705 TCATTCATGCCTCCGTCTCC 59.534 55.000 0.0 0.0 0.0 3.71 F
3350 4711 1.143684 AGACCACAAAGACATGCACCT 59.856 47.619 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2535 3756 0.179084 ATCAAGATGGTACGGCGGTG 60.179 55.000 13.24 0.0 0.0 4.94 R
3376 4741 0.941542 GGTTGCTTGTAACGAGTGCA 59.058 50.000 0.00 0.0 0.0 4.57 R
4229 5645 1.067846 TCGACAAGGGAACGACATCTG 60.068 52.381 0.00 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.467920 CCCTTTCCAGAGGAATGCAC 58.532 55.000 0.00 0.00 41.71 4.57
27 28 1.339055 CCTTTCCAGAGGAATGCACGA 60.339 52.381 0.00 0.00 41.71 4.35
36 37 5.509670 CCAGAGGAATGCACGACAGATATTA 60.510 44.000 0.00 0.00 0.00 0.98
44 45 5.102313 TGCACGACAGATATTAGTGAAGTG 58.898 41.667 0.00 0.00 35.03 3.16
120 121 5.837437 ACTATTAGAGTGAATCTCGCAAGG 58.163 41.667 0.00 0.00 46.86 3.61
124 125 1.996191 GAGTGAATCTCGCAAGGACAC 59.004 52.381 0.00 0.00 33.25 3.67
186 187 2.159382 AGTTTGTTGGCCACCTTATCG 58.841 47.619 3.88 0.00 0.00 2.92
293 294 1.983481 TGGCCAACCATGTGCCATC 60.983 57.895 0.61 0.00 43.52 3.51
312 313 5.638657 GCCATCAAAATTTAGCATCACACAA 59.361 36.000 0.00 0.00 0.00 3.33
367 368 2.414058 TAACACCGCAAGCATTTGTG 57.586 45.000 0.00 0.00 42.96 3.33
571 762 9.151471 TGAACTTCTATTTGAAACTATTCCTCG 57.849 33.333 0.00 0.00 34.49 4.63
624 815 7.490725 TCAAAGAAATGCTTCAAATTCGTTTGA 59.509 29.630 0.00 0.00 38.99 2.69
630 821 5.355596 TGCTTCAAATTCGTTTGATTTGGT 58.644 33.333 4.62 0.00 40.25 3.67
633 824 6.628461 GCTTCAAATTCGTTTGATTTGGTTTG 59.372 34.615 4.62 0.00 40.25 2.93
636 827 6.989169 TCAAATTCGTTTGATTTGGTTTGGAT 59.011 30.769 9.03 0.00 36.15 3.41
669 872 0.878961 GTTCTGTGCGACGGTTTCCT 60.879 55.000 0.00 0.00 0.00 3.36
670 873 0.878523 TTCTGTGCGACGGTTTCCTG 60.879 55.000 0.00 0.00 0.00 3.86
672 875 3.723348 GTGCGACGGTTTCCTGCC 61.723 66.667 0.00 0.00 0.00 4.85
684 892 2.746412 TTCCTGCCCCGTGTGTGATG 62.746 60.000 0.00 0.00 0.00 3.07
685 893 2.747460 CTGCCCCGTGTGTGATGG 60.747 66.667 0.00 0.00 0.00 3.51
689 897 4.492604 CCCGTGTGTGATGGGTTT 57.507 55.556 0.00 0.00 45.31 3.27
690 898 2.727103 CCCGTGTGTGATGGGTTTT 58.273 52.632 0.00 0.00 45.31 2.43
691 899 1.036707 CCCGTGTGTGATGGGTTTTT 58.963 50.000 0.00 0.00 45.31 1.94
979 1809 7.393234 TCACAAGAAGGAAAAGAAAAGAAGACA 59.607 33.333 0.00 0.00 0.00 3.41
1108 1938 1.226717 CTGCTTCGACGTAGGGCTC 60.227 63.158 13.14 0.00 0.00 4.70
1322 2152 1.819905 GCCACTGCTCCTCTCCTAC 59.180 63.158 0.00 0.00 33.53 3.18
1323 2153 0.972983 GCCACTGCTCCTCTCCTACA 60.973 60.000 0.00 0.00 33.53 2.74
1336 2166 3.585862 TCTCCTACACGTTTGAATCTGC 58.414 45.455 0.00 0.00 0.00 4.26
1343 2173 3.105203 CACGTTTGAATCTGCGTGTTTT 58.895 40.909 13.29 0.00 46.30 2.43
1344 2174 4.275662 CACGTTTGAATCTGCGTGTTTTA 58.724 39.130 13.29 0.00 46.30 1.52
1345 2175 4.909305 CACGTTTGAATCTGCGTGTTTTAT 59.091 37.500 13.29 0.00 46.30 1.40
1391 2224 1.261089 CACATGCAAAACAAAAGCGGG 59.739 47.619 0.00 0.00 0.00 6.13
1414 2249 5.186996 CCATATTTTGGCACACTATGGAC 57.813 43.478 19.77 0.00 43.01 4.02
1429 2264 5.528690 CACTATGGACCCAGTGTGAAATATG 59.471 44.000 14.76 0.00 37.87 1.78
1441 2276 5.877012 AGTGTGAAATATGTACTTGAGGCAG 59.123 40.000 0.00 0.00 0.00 4.85
1456 2291 6.096001 ACTTGAGGCAGTTAATCAATGGAATC 59.904 38.462 0.00 0.00 32.82 2.52
1457 2292 5.508567 TGAGGCAGTTAATCAATGGAATCA 58.491 37.500 0.00 0.00 0.00 2.57
1468 2490 2.749076 CAATGGAATCACGAGCCAGAAA 59.251 45.455 0.00 0.00 34.74 2.52
1528 2550 5.952526 TTGATGATAGTAGAACGCCGATA 57.047 39.130 0.00 0.00 0.00 2.92
1755 2777 4.663592 CCCTCTATACCCAGGTTTGGTAAT 59.336 45.833 0.00 0.00 43.40 1.89
2102 3124 3.362295 CATGTGGTGTTGTTTCTCGTTG 58.638 45.455 0.00 0.00 0.00 4.10
2135 3160 4.320870 AGGAATCACGATAACGGTTTTGT 58.679 39.130 0.00 0.00 44.46 2.83
2136 3161 5.481105 AGGAATCACGATAACGGTTTTGTA 58.519 37.500 0.00 0.00 44.46 2.41
2175 3381 1.891150 CAGCTCTTTGAGTTGGCCAAT 59.109 47.619 23.66 10.87 37.27 3.16
2232 3438 1.324005 ACTGCTCCTACTCCGGCTTC 61.324 60.000 0.00 0.00 0.00 3.86
2239 3445 1.033574 CTACTCCGGCTTCCAGGTAG 58.966 60.000 0.00 0.00 0.00 3.18
2240 3446 0.627451 TACTCCGGCTTCCAGGTAGA 59.373 55.000 0.00 0.00 0.00 2.59
2241 3447 0.684805 ACTCCGGCTTCCAGGTAGAG 60.685 60.000 0.00 0.00 0.00 2.43
2243 3449 0.683504 TCCGGCTTCCAGGTAGAGAC 60.684 60.000 0.00 0.00 0.00 3.36
2262 3477 3.771479 AGACCATATTCACTCACTGCTGA 59.229 43.478 0.00 0.00 0.00 4.26
2298 3513 7.637709 GGTTGGTTGACAAACAAAATCTATC 57.362 36.000 19.92 6.13 46.24 2.08
2299 3514 7.433680 GGTTGGTTGACAAACAAAATCTATCT 58.566 34.615 19.92 0.00 46.24 1.98
2342 3557 2.588314 GATGAGCTGCTCTGGGCG 60.588 66.667 28.04 0.00 45.43 6.13
2393 3608 1.275573 GGCAAGTACCTCGACTTCCTT 59.724 52.381 0.00 0.00 37.57 3.36
2499 3720 2.164219 GTGGGTCGCACATTGATTCATT 59.836 45.455 14.72 0.00 0.00 2.57
2509 3730 3.317149 ACATTGATTCATTCATGCCTCCG 59.683 43.478 0.00 0.00 33.34 4.63
2510 3731 2.715749 TGATTCATTCATGCCTCCGT 57.284 45.000 0.00 0.00 0.00 4.69
2511 3732 2.564771 TGATTCATTCATGCCTCCGTC 58.435 47.619 0.00 0.00 0.00 4.79
2512 3733 2.171237 TGATTCATTCATGCCTCCGTCT 59.829 45.455 0.00 0.00 0.00 4.18
2513 3734 2.315925 TTCATTCATGCCTCCGTCTC 57.684 50.000 0.00 0.00 0.00 3.36
2514 3735 0.465705 TCATTCATGCCTCCGTCTCC 59.534 55.000 0.00 0.00 0.00 3.71
2525 3746 2.034878 CTCCGTCTCCATGGATTCAGA 58.965 52.381 16.63 6.06 37.06 3.27
2526 3747 2.432146 CTCCGTCTCCATGGATTCAGAA 59.568 50.000 16.63 0.00 37.06 3.02
2535 3756 3.428045 CCATGGATTCAGAAAAAGTCCGC 60.428 47.826 5.56 0.00 0.00 5.54
2541 3763 2.254350 GAAAAAGTCCGCACCGCC 59.746 61.111 0.00 0.00 0.00 6.13
2551 3773 2.125269 GCACCGCCGTACCATCTT 60.125 61.111 0.00 0.00 0.00 2.40
2552 3774 2.461110 GCACCGCCGTACCATCTTG 61.461 63.158 0.00 0.00 0.00 3.02
2591 3813 5.438761 TTTTGTTTTGTTTTTGGTGGGTG 57.561 34.783 0.00 0.00 0.00 4.61
2592 3814 4.351874 TTGTTTTGTTTTTGGTGGGTGA 57.648 36.364 0.00 0.00 0.00 4.02
2593 3815 4.559862 TGTTTTGTTTTTGGTGGGTGAT 57.440 36.364 0.00 0.00 0.00 3.06
2594 3816 4.911390 TGTTTTGTTTTTGGTGGGTGATT 58.089 34.783 0.00 0.00 0.00 2.57
2595 3817 5.316987 TGTTTTGTTTTTGGTGGGTGATTT 58.683 33.333 0.00 0.00 0.00 2.17
2596 3818 5.412904 TGTTTTGTTTTTGGTGGGTGATTTC 59.587 36.000 0.00 0.00 0.00 2.17
2722 3968 6.256975 ACGTACAACTCGTGGTATATTACGTA 59.743 38.462 10.29 0.00 40.87 3.57
2753 3999 2.036475 TGCCTCACTCTGAACTCTGAAC 59.964 50.000 0.00 0.00 0.00 3.18
2879 4135 2.102252 GTGCTCTCCATCTACTCCAAGG 59.898 54.545 0.00 0.00 0.00 3.61
3077 4435 2.737180 CGTCCATCCCCTCCATCG 59.263 66.667 0.00 0.00 0.00 3.84
3130 4488 3.997064 CTTCTCCTCGTGGCTGCCG 62.997 68.421 14.98 2.78 0.00 5.69
3317 4675 1.518572 CCTGCGTCGCCGACTTTAT 60.519 57.895 16.07 0.00 35.63 1.40
3342 4703 6.148480 TCGTCTTACTAGTAGACCACAAAGAC 59.852 42.308 16.02 16.02 38.65 3.01
3347 4708 3.769739 AGTAGACCACAAAGACATGCA 57.230 42.857 0.00 0.00 0.00 3.96
3349 4710 1.609208 AGACCACAAAGACATGCACC 58.391 50.000 0.00 0.00 0.00 5.01
3350 4711 1.143684 AGACCACAAAGACATGCACCT 59.856 47.619 0.00 0.00 0.00 4.00
3351 4712 1.537202 GACCACAAAGACATGCACCTC 59.463 52.381 0.00 0.00 0.00 3.85
3376 4741 1.086696 ACGCAACGCAAGCAAGATAT 58.913 45.000 0.00 0.00 45.62 1.63
3377 4742 1.202065 ACGCAACGCAAGCAAGATATG 60.202 47.619 0.00 0.00 45.62 1.78
3391 4756 4.826500 CAAGATATGCACTCGTTACAAGC 58.173 43.478 0.00 0.00 0.00 4.01
3392 4757 4.123497 AGATATGCACTCGTTACAAGCA 57.877 40.909 0.00 0.00 39.79 3.91
3393 4758 4.503910 AGATATGCACTCGTTACAAGCAA 58.496 39.130 0.00 0.00 38.85 3.91
3394 4759 2.969443 ATGCACTCGTTACAAGCAAC 57.031 45.000 0.00 0.00 38.85 4.17
3395 4760 0.941542 TGCACTCGTTACAAGCAACC 59.058 50.000 0.00 0.00 31.42 3.77
3396 4761 0.941542 GCACTCGTTACAAGCAACCA 59.058 50.000 0.00 0.00 0.00 3.67
3397 4762 1.332375 GCACTCGTTACAAGCAACCAA 59.668 47.619 0.00 0.00 0.00 3.67
3398 4763 2.602217 GCACTCGTTACAAGCAACCAAG 60.602 50.000 0.00 0.00 0.00 3.61
3399 4764 2.869801 CACTCGTTACAAGCAACCAAGA 59.130 45.455 0.00 0.00 0.00 3.02
3400 4765 3.498397 CACTCGTTACAAGCAACCAAGAT 59.502 43.478 0.00 0.00 0.00 2.40
3401 4766 4.688879 CACTCGTTACAAGCAACCAAGATA 59.311 41.667 0.00 0.00 0.00 1.98
3402 4767 4.689345 ACTCGTTACAAGCAACCAAGATAC 59.311 41.667 0.00 0.00 0.00 2.24
3403 4768 4.633175 TCGTTACAAGCAACCAAGATACA 58.367 39.130 0.00 0.00 0.00 2.29
3404 4769 4.449743 TCGTTACAAGCAACCAAGATACAC 59.550 41.667 0.00 0.00 0.00 2.90
3405 4770 4.451096 CGTTACAAGCAACCAAGATACACT 59.549 41.667 0.00 0.00 0.00 3.55
3406 4771 5.614668 CGTTACAAGCAACCAAGATACACTG 60.615 44.000 0.00 0.00 0.00 3.66
3407 4772 3.149196 ACAAGCAACCAAGATACACTGG 58.851 45.455 0.00 0.00 0.00 4.00
3408 4773 3.149196 CAAGCAACCAAGATACACTGGT 58.851 45.455 0.00 0.00 33.67 4.00
3409 4774 4.202419 ACAAGCAACCAAGATACACTGGTA 60.202 41.667 0.00 0.00 32.61 3.25
3410 4775 4.634012 AGCAACCAAGATACACTGGTAA 57.366 40.909 0.00 0.00 32.61 2.85
3411 4776 4.324267 AGCAACCAAGATACACTGGTAAC 58.676 43.478 0.00 0.00 32.61 2.50
3413 4778 4.083484 GCAACCAAGATACACTGGTAACAC 60.083 45.833 0.00 0.00 46.17 3.32
3424 4789 9.118300 GATACACTGGTAACACTACTACTATGT 57.882 37.037 0.00 0.00 46.17 2.29
3478 4843 8.998377 TGTATTTGTAACATATGCATTCGCTAT 58.002 29.630 3.54 0.00 39.64 2.97
3508 4873 1.074319 TACTTGTTCGTGATCGCCGC 61.074 55.000 0.00 0.00 36.96 6.53
3518 4883 5.427036 TCGTGATCGCCGCATTATATATA 57.573 39.130 0.00 0.00 36.96 0.86
3544 4909 8.506168 TTTGTAATGTAACAAGATCCCATCTC 57.494 34.615 0.00 0.00 40.29 2.75
3545 4910 6.280643 TGTAATGTAACAAGATCCCATCTCG 58.719 40.000 0.00 0.00 39.08 4.04
3546 4911 3.179443 TGTAACAAGATCCCATCTCGC 57.821 47.619 0.00 0.00 39.08 5.03
3547 4912 2.128035 GTAACAAGATCCCATCTCGCG 58.872 52.381 0.00 0.00 39.08 5.87
3548 4913 0.811616 AACAAGATCCCATCTCGCGC 60.812 55.000 0.00 0.00 39.08 6.86
3549 4914 1.227350 CAAGATCCCATCTCGCGCA 60.227 57.895 8.75 0.00 39.08 6.09
3550 4915 1.227380 AAGATCCCATCTCGCGCAC 60.227 57.895 8.75 0.00 39.08 5.34
3551 4916 2.960957 AAGATCCCATCTCGCGCACG 62.961 60.000 8.75 0.00 39.08 5.34
3556 4921 3.906649 CATCTCGCGCACGCTCAC 61.907 66.667 13.70 0.00 39.84 3.51
3617 4982 3.355344 GCCCCCAAATCCCCTCCA 61.355 66.667 0.00 0.00 0.00 3.86
3638 5003 3.703127 GGCTTCCCGTCTCCCGTT 61.703 66.667 0.00 0.00 33.66 4.44
3851 5264 0.820226 CAGGAGGTCTTGCGATCTGA 59.180 55.000 0.00 0.00 28.47 3.27
3950 5363 1.078848 GCCTTGATCGCTGGTCTGT 60.079 57.895 0.00 0.00 0.00 3.41
3955 5368 1.241315 TGATCGCTGGTCTGTCGTCA 61.241 55.000 0.00 0.00 0.00 4.35
4031 5444 1.374758 GTCTGGTCCTTGACAGCGG 60.375 63.158 9.67 0.00 33.68 5.52
4033 5446 4.329545 TGGTCCTTGACAGCGGGC 62.330 66.667 0.00 0.00 33.68 6.13
4109 5523 2.012673 GCGTCGTAGTCCCTCTTTAGA 58.987 52.381 0.00 0.00 0.00 2.10
4441 5859 3.296709 GATGGCGGCGGATATCGGT 62.297 63.158 9.78 0.00 39.69 4.69
4449 5867 1.371183 CGGATATCGGTGGCATGGT 59.629 57.895 2.20 0.00 34.75 3.55
4505 5923 4.069232 CGCGCAGGAGGAGGTTGA 62.069 66.667 8.75 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.323725 GCATTCCTCTGGAAAGGGCA 60.324 55.000 2.98 0.00 45.41 5.36
25 26 5.176406 CCATGCACTTCACTAATATCTGTCG 59.824 44.000 0.00 0.00 0.00 4.35
27 28 5.819379 CACCATGCACTTCACTAATATCTGT 59.181 40.000 0.00 0.00 0.00 3.41
36 37 0.767375 AGACCACCATGCACTTCACT 59.233 50.000 0.00 0.00 0.00 3.41
44 45 1.379044 CCTCCCAAGACCACCATGC 60.379 63.158 0.00 0.00 0.00 4.06
120 121 4.309950 AAGGGTGGCCGTCGTGTC 62.310 66.667 0.00 0.00 0.00 3.67
186 187 2.930682 GTCGCACCTTCTTATCTTGGTC 59.069 50.000 0.00 0.00 0.00 4.02
293 294 9.160576 CAAATGTTTGTGTGATGCTAAATTTTG 57.839 29.630 0.00 0.00 33.59 2.44
312 313 5.336744 CGCGGGTTGATAAATACAAATGTT 58.663 37.500 0.00 0.00 0.00 2.71
367 368 4.688511 TGCATCACACGGGTTAATAAAC 57.311 40.909 0.00 0.00 34.66 2.01
571 762 2.017049 CCAAATCATTCCACCTCGGAC 58.983 52.381 0.00 0.00 46.36 4.79
624 815 3.222603 GCTATCGGGATCCAAACCAAAT 58.777 45.455 15.23 0.00 0.00 2.32
630 821 1.694150 CTCAGGCTATCGGGATCCAAA 59.306 52.381 15.23 0.12 0.00 3.28
633 824 1.273886 GAACTCAGGCTATCGGGATCC 59.726 57.143 1.92 1.92 0.00 3.36
636 827 1.342076 ACAGAACTCAGGCTATCGGGA 60.342 52.381 0.00 0.00 0.00 5.14
669 872 4.343323 CCCATCACACACGGGGCA 62.343 66.667 0.00 0.00 36.21 5.36
670 873 3.860930 AACCCATCACACACGGGGC 62.861 63.158 0.00 0.00 44.96 5.80
672 875 1.036707 AAAAACCCATCACACACGGG 58.963 50.000 0.00 0.00 46.22 5.28
704 912 2.453650 CAGATTTCTGCATCGCACAG 57.546 50.000 0.00 0.00 37.15 3.66
725 933 2.223876 CCCATGCATTTATCACACTGGC 60.224 50.000 0.00 0.00 0.00 4.85
941 1767 3.444916 CTTCTTGTGATGGATGCAATGC 58.555 45.455 0.00 0.00 33.97 3.56
942 1768 3.697542 TCCTTCTTGTGATGGATGCAATG 59.302 43.478 0.00 0.00 40.32 2.82
943 1769 3.972133 TCCTTCTTGTGATGGATGCAAT 58.028 40.909 0.00 0.00 40.32 3.56
1108 1938 4.598894 CCATCGCCTCCAGCTCCG 62.599 72.222 0.00 0.00 40.39 4.63
1323 2153 3.414549 AAAACACGCAGATTCAAACGT 57.585 38.095 0.00 0.00 39.78 3.99
1355 2188 3.940221 GCATGTGCTGAAGAGAAATCTCT 59.060 43.478 7.13 7.13 45.64 3.10
1359 2192 4.859304 TTTGCATGTGCTGAAGAGAAAT 57.141 36.364 6.55 0.00 42.66 2.17
1414 2249 5.586243 CCTCAAGTACATATTTCACACTGGG 59.414 44.000 0.00 0.00 0.00 4.45
1429 2264 5.880332 TCCATTGATTAACTGCCTCAAGTAC 59.120 40.000 0.00 0.00 32.82 2.73
1441 2276 4.335315 TGGCTCGTGATTCCATTGATTAAC 59.665 41.667 0.00 0.00 0.00 2.01
1456 2291 4.488126 TCTTTCATTTTTCTGGCTCGTG 57.512 40.909 0.00 0.00 0.00 4.35
1457 2292 5.514274 TTTCTTTCATTTTTCTGGCTCGT 57.486 34.783 0.00 0.00 0.00 4.18
1502 2524 6.322491 TCGGCGTTCTACTATCATCAATATG 58.678 40.000 6.85 0.00 0.00 1.78
1505 2527 4.848562 TCGGCGTTCTACTATCATCAAT 57.151 40.909 6.85 0.00 0.00 2.57
1506 2528 4.848562 ATCGGCGTTCTACTATCATCAA 57.151 40.909 6.85 0.00 0.00 2.57
1508 2530 5.696822 TGTTATCGGCGTTCTACTATCATC 58.303 41.667 6.85 0.00 0.00 2.92
1510 2532 4.023450 CCTGTTATCGGCGTTCTACTATCA 60.023 45.833 6.85 0.00 0.00 2.15
1511 2533 4.023365 ACCTGTTATCGGCGTTCTACTATC 60.023 45.833 6.85 0.00 0.00 2.08
1517 2539 3.256558 GTTAACCTGTTATCGGCGTTCT 58.743 45.455 6.85 0.00 0.00 3.01
1521 2543 2.304751 AGGTTAACCTGTTATCGGCG 57.695 50.000 26.57 0.00 46.55 6.46
1682 2704 2.311688 AATCGACGCCCCAGTGGATC 62.312 60.000 11.95 0.13 38.36 3.36
1688 2710 1.815421 CAGGAAATCGACGCCCCAG 60.815 63.158 0.00 0.00 0.00 4.45
1989 3011 2.363795 ACTAGGTAGGCCGCTGCA 60.364 61.111 1.55 0.00 40.13 4.41
2102 3124 7.461918 GTTATCGTGATTCCTTCAACTTAACC 58.538 38.462 0.00 0.00 35.70 2.85
2143 3168 3.766591 TCAAAGAGCTGACCAAACCAAAA 59.233 39.130 0.00 0.00 0.00 2.44
2146 3171 2.092429 ACTCAAAGAGCTGACCAAACCA 60.092 45.455 0.00 0.00 32.04 3.67
2175 3381 4.641868 ACTGGAAGGATCCCCTGTAATTA 58.358 43.478 15.14 0.00 45.95 1.40
2232 3438 4.895889 TGAGTGAATATGGTCTCTACCTGG 59.104 45.833 0.00 0.00 46.91 4.45
2239 3445 4.118410 CAGCAGTGAGTGAATATGGTCTC 58.882 47.826 0.00 0.00 0.00 3.36
2240 3446 3.771479 TCAGCAGTGAGTGAATATGGTCT 59.229 43.478 0.00 0.00 0.00 3.85
2241 3447 4.118410 CTCAGCAGTGAGTGAATATGGTC 58.882 47.826 0.00 0.00 44.72 4.02
2262 3477 5.984725 TGTCAACCAACCAATATATCGACT 58.015 37.500 0.00 0.00 0.00 4.18
2269 3484 8.210265 AGATTTTGTTTGTCAACCAACCAATAT 58.790 29.630 0.00 0.00 35.67 1.28
2297 3512 9.020731 TGCGGTACATAGATTGATTAGATTAGA 57.979 33.333 0.00 0.00 0.00 2.10
2298 3513 9.295214 CTGCGGTACATAGATTGATTAGATTAG 57.705 37.037 0.00 0.00 0.00 1.73
2299 3514 8.251026 CCTGCGGTACATAGATTGATTAGATTA 58.749 37.037 0.00 0.00 0.00 1.75
2315 3530 1.517361 CAGCTCATCCTGCGGTACA 59.483 57.895 0.00 0.00 35.28 2.90
2342 3557 4.849329 CGGTAGAGCCACGCCGAC 62.849 72.222 0.00 0.00 41.54 4.79
2372 3587 0.606604 GGAAGTCGAGGTACTTGCCA 59.393 55.000 0.00 0.00 41.55 4.92
2499 3720 1.689243 CCATGGAGACGGAGGCATGA 61.689 60.000 5.56 0.00 0.00 3.07
2509 3730 5.124617 GGACTTTTTCTGAATCCATGGAGAC 59.875 44.000 21.33 16.14 0.00 3.36
2510 3731 5.256474 GGACTTTTTCTGAATCCATGGAGA 58.744 41.667 21.33 9.01 0.00 3.71
2511 3732 4.095483 CGGACTTTTTCTGAATCCATGGAG 59.905 45.833 21.33 6.48 31.20 3.86
2512 3733 4.009675 CGGACTTTTTCTGAATCCATGGA 58.990 43.478 18.88 18.88 31.20 3.41
2513 3734 3.428045 GCGGACTTTTTCTGAATCCATGG 60.428 47.826 4.97 4.97 31.20 3.66
2514 3735 3.191162 TGCGGACTTTTTCTGAATCCATG 59.809 43.478 8.14 0.00 31.20 3.66
2525 3746 2.992607 TACGGCGGTGCGGACTTTTT 62.993 55.000 13.24 0.00 33.14 1.94
2526 3747 3.518419 TACGGCGGTGCGGACTTTT 62.518 57.895 13.24 0.00 33.14 2.27
2535 3756 0.179084 ATCAAGATGGTACGGCGGTG 60.179 55.000 13.24 0.00 0.00 4.94
2541 3763 5.817296 TCCTGAAATCAATCAAGATGGTACG 59.183 40.000 0.00 0.00 0.00 3.67
2578 3800 5.017294 TGAAGAAATCACCCACCAAAAAC 57.983 39.130 0.00 0.00 31.50 2.43
2580 3802 3.640967 CCTGAAGAAATCACCCACCAAAA 59.359 43.478 0.00 0.00 33.47 2.44
2581 3803 3.117322 TCCTGAAGAAATCACCCACCAAA 60.117 43.478 0.00 0.00 33.47 3.28
2582 3804 2.445145 TCCTGAAGAAATCACCCACCAA 59.555 45.455 0.00 0.00 33.47 3.67
2583 3805 2.040278 CTCCTGAAGAAATCACCCACCA 59.960 50.000 0.00 0.00 33.47 4.17
2588 3810 7.687941 TTCAAATACTCCTGAAGAAATCACC 57.312 36.000 0.00 0.00 33.47 4.02
2589 3811 8.239998 CCTTTCAAATACTCCTGAAGAAATCAC 58.760 37.037 0.00 0.00 33.30 3.06
2591 3813 8.567285 TCCTTTCAAATACTCCTGAAGAAATC 57.433 34.615 0.00 0.00 33.30 2.17
2592 3814 8.940397 TTCCTTTCAAATACTCCTGAAGAAAT 57.060 30.769 0.00 0.00 33.30 2.17
2593 3815 7.448469 CCTTCCTTTCAAATACTCCTGAAGAAA 59.552 37.037 0.00 0.00 33.30 2.52
2594 3816 6.942576 CCTTCCTTTCAAATACTCCTGAAGAA 59.057 38.462 0.00 0.00 33.30 2.52
2595 3817 6.272324 TCCTTCCTTTCAAATACTCCTGAAGA 59.728 38.462 0.00 0.00 33.30 2.87
2596 3818 6.476378 TCCTTCCTTTCAAATACTCCTGAAG 58.524 40.000 0.00 0.00 33.30 3.02
2700 3946 7.786178 ACTACGTAATATACCACGAGTTGTA 57.214 36.000 13.29 0.00 40.56 2.41
2753 3999 1.691196 TGAGAGGTTTTGGGCTGTTG 58.309 50.000 0.00 0.00 0.00 3.33
2965 4323 1.475403 CCAGGATGTAGTCGACCTGT 58.525 55.000 13.01 0.00 45.65 4.00
3130 4488 4.754667 GGGTTGGGGTCGCTCGTC 62.755 72.222 0.00 0.00 0.00 4.20
3181 4539 3.859650 GAACTGGTCGTTCTCGTCA 57.140 52.632 0.00 0.00 46.74 4.35
3238 4596 2.171725 GGCGGCGTTGATGTAGGTC 61.172 63.158 9.37 0.00 0.00 3.85
3292 4650 2.357034 GGCGACGCAGGTTTCTGA 60.357 61.111 23.09 0.00 43.49 3.27
3317 4675 6.148480 GTCTTTGTGGTCTACTAGTAAGACGA 59.852 42.308 18.27 14.67 33.41 4.20
3376 4741 0.941542 GGTTGCTTGTAACGAGTGCA 59.058 50.000 0.00 0.00 0.00 4.57
3377 4742 0.941542 TGGTTGCTTGTAACGAGTGC 59.058 50.000 0.00 0.00 0.00 4.40
3378 4743 2.869801 TCTTGGTTGCTTGTAACGAGTG 59.130 45.455 0.00 0.00 0.00 3.51
3379 4744 3.188159 TCTTGGTTGCTTGTAACGAGT 57.812 42.857 0.00 0.00 0.00 4.18
3380 4745 4.688879 TGTATCTTGGTTGCTTGTAACGAG 59.311 41.667 0.00 0.00 0.00 4.18
3381 4746 4.449743 GTGTATCTTGGTTGCTTGTAACGA 59.550 41.667 0.00 0.00 0.00 3.85
3382 4747 4.451096 AGTGTATCTTGGTTGCTTGTAACG 59.549 41.667 0.00 0.00 0.00 3.18
3383 4748 5.334879 CCAGTGTATCTTGGTTGCTTGTAAC 60.335 44.000 0.00 0.00 0.00 2.50
3384 4749 4.759693 CCAGTGTATCTTGGTTGCTTGTAA 59.240 41.667 0.00 0.00 0.00 2.41
3385 4750 4.202419 ACCAGTGTATCTTGGTTGCTTGTA 60.202 41.667 0.00 0.00 0.00 2.41
3386 4751 3.149196 CCAGTGTATCTTGGTTGCTTGT 58.851 45.455 0.00 0.00 0.00 3.16
3387 4752 3.149196 ACCAGTGTATCTTGGTTGCTTG 58.851 45.455 0.00 0.00 0.00 4.01
3388 4753 3.508845 ACCAGTGTATCTTGGTTGCTT 57.491 42.857 0.00 0.00 0.00 3.91
3389 4754 4.202419 TGTTACCAGTGTATCTTGGTTGCT 60.202 41.667 1.03 0.00 35.99 3.91
3390 4755 4.069304 TGTTACCAGTGTATCTTGGTTGC 58.931 43.478 1.03 0.00 35.99 4.17
3391 4756 5.305585 AGTGTTACCAGTGTATCTTGGTTG 58.694 41.667 1.03 0.00 35.99 3.77
3392 4757 5.562298 AGTGTTACCAGTGTATCTTGGTT 57.438 39.130 1.03 0.00 35.99 3.67
3393 4758 5.778750 AGTAGTGTTACCAGTGTATCTTGGT 59.221 40.000 1.44 1.44 38.36 3.67
3394 4759 6.282199 AGTAGTGTTACCAGTGTATCTTGG 57.718 41.667 0.00 0.00 0.00 3.61
3395 4760 8.053026 AGTAGTAGTGTTACCAGTGTATCTTG 57.947 38.462 0.00 0.00 0.00 3.02
3396 4761 9.917887 ATAGTAGTAGTGTTACCAGTGTATCTT 57.082 33.333 0.00 0.00 0.00 2.40
3397 4762 9.339850 CATAGTAGTAGTGTTACCAGTGTATCT 57.660 37.037 0.00 0.00 0.00 1.98
3398 4763 9.118300 ACATAGTAGTAGTGTTACCAGTGTATC 57.882 37.037 0.00 0.00 0.00 2.24
3399 4764 9.471702 AACATAGTAGTAGTGTTACCAGTGTAT 57.528 33.333 0.00 0.00 34.55 2.29
3400 4765 8.868522 AACATAGTAGTAGTGTTACCAGTGTA 57.131 34.615 0.00 0.00 34.55 2.90
3401 4766 7.668886 AGAACATAGTAGTAGTGTTACCAGTGT 59.331 37.037 5.78 0.00 36.30 3.55
3402 4767 7.968956 CAGAACATAGTAGTAGTGTTACCAGTG 59.031 40.741 5.78 0.00 36.30 3.66
3403 4768 7.668886 ACAGAACATAGTAGTAGTGTTACCAGT 59.331 37.037 5.78 0.00 36.30 4.00
3404 4769 8.053026 ACAGAACATAGTAGTAGTGTTACCAG 57.947 38.462 5.78 0.00 36.30 4.00
3405 4770 8.301720 CAACAGAACATAGTAGTAGTGTTACCA 58.698 37.037 5.78 0.00 36.30 3.25
3406 4771 7.275123 GCAACAGAACATAGTAGTAGTGTTACC 59.725 40.741 5.78 0.00 36.30 2.85
3407 4772 8.027771 AGCAACAGAACATAGTAGTAGTGTTAC 58.972 37.037 0.00 0.00 36.30 2.50
3408 4773 8.118976 AGCAACAGAACATAGTAGTAGTGTTA 57.881 34.615 0.00 0.00 36.30 2.41
3409 4774 6.994221 AGCAACAGAACATAGTAGTAGTGTT 58.006 36.000 5.57 5.57 38.66 3.32
3410 4775 6.591750 AGCAACAGAACATAGTAGTAGTGT 57.408 37.500 0.00 0.00 0.00 3.55
3411 4776 8.981724 TTTAGCAACAGAACATAGTAGTAGTG 57.018 34.615 0.00 0.00 0.00 2.74
3424 4789 4.336993 ACACGTGGAAATTTAGCAACAGAA 59.663 37.500 21.57 0.00 0.00 3.02
3478 4843 4.818005 TCACGAACAAGTACAGAGTACTGA 59.182 41.667 10.29 0.89 46.03 3.41
3518 4883 9.125026 GAGATGGGATCTTGTTACATTACAAAT 57.875 33.333 0.00 0.00 40.38 2.32
3545 4910 3.702555 AGTTTCGTGAGCGTGCGC 61.703 61.111 8.67 8.67 42.33 6.09
3546 4911 2.168621 CAGTTTCGTGAGCGTGCG 59.831 61.111 0.00 0.00 39.49 5.34
3547 4912 2.127609 GCAGTTTCGTGAGCGTGC 60.128 61.111 0.00 0.00 39.49 5.34
3548 4913 2.551270 GGCAGTTTCGTGAGCGTG 59.449 61.111 0.00 0.00 39.49 5.34
3549 4914 2.665185 GGGCAGTTTCGTGAGCGT 60.665 61.111 0.00 0.00 39.49 5.07
3550 4915 2.357517 AGGGCAGTTTCGTGAGCG 60.358 61.111 0.00 0.00 39.92 5.03
3551 4916 2.035442 GGAGGGCAGTTTCGTGAGC 61.035 63.158 0.00 0.00 0.00 4.26
3552 4917 1.376037 GGGAGGGCAGTTTCGTGAG 60.376 63.158 0.00 0.00 0.00 3.51
3553 4918 2.747686 GGGAGGGCAGTTTCGTGA 59.252 61.111 0.00 0.00 0.00 4.35
3554 4919 2.742372 CGGGAGGGCAGTTTCGTG 60.742 66.667 0.00 0.00 0.00 4.35
3555 4920 2.920912 TCGGGAGGGCAGTTTCGT 60.921 61.111 0.00 0.00 0.00 3.85
3556 4921 2.125512 CTCGGGAGGGCAGTTTCG 60.126 66.667 0.00 0.00 0.00 3.46
3614 4979 3.706373 GACGGGAAGCCTGCTGGA 61.706 66.667 14.77 0.00 32.02 3.86
3617 4982 3.394836 GGAGACGGGAAGCCTGCT 61.395 66.667 0.00 0.00 32.02 4.24
3679 5092 2.808321 GTCCGTCCGCGAAGAACC 60.808 66.667 8.23 0.00 41.33 3.62
4033 5446 3.053896 GTTTCCCCCGGAGTTGCG 61.054 66.667 0.73 0.00 31.21 4.85
4109 5523 3.721035 GAGCAAACTCCAAAACAATGCT 58.279 40.909 0.00 0.00 44.61 3.79
4229 5645 1.067846 TCGACAAGGGAACGACATCTG 60.068 52.381 0.00 0.00 0.00 2.90
4441 5859 2.034532 CTCCACAGCACCATGCCA 59.965 61.111 0.00 0.00 46.52 4.92
4505 5923 2.125147 CACCATGACGCCGGACAT 60.125 61.111 5.05 4.30 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.