Multiple sequence alignment - TraesCS1B01G107600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G107600 chr1B 100.000 5329 0 0 1 5329 119764155 119769483 0.000000e+00 9841.0
1 TraesCS1B01G107600 chr1B 98.810 84 1 0 1 84 90420828 90420911 3.320000e-32 150.0
2 TraesCS1B01G107600 chr1A 92.518 4277 230 40 488 4715 77069152 77073387 0.000000e+00 6043.0
3 TraesCS1B01G107600 chr1A 86.822 387 39 5 157 532 77059888 77060273 6.380000e-114 422.0
4 TraesCS1B01G107600 chr1A 95.294 85 4 0 1 85 552265298 552265382 9.310000e-28 135.0
5 TraesCS1B01G107600 chr1A 94.828 58 3 0 81 138 77058889 77058946 2.040000e-14 91.6
6 TraesCS1B01G107600 chr1A 92.308 52 1 1 4766 4817 77073410 77073458 2.660000e-08 71.3
7 TraesCS1B01G107600 chr1D 92.726 4248 210 46 500 4690 76450266 76454471 0.000000e+00 6041.0
8 TraesCS1B01G107600 chr1D 89.228 557 46 5 4688 5243 76454629 76455172 0.000000e+00 684.0
9 TraesCS1B01G107600 chr1D 86.316 380 37 4 157 524 76449284 76449660 2.990000e-107 399.0
10 TraesCS1B01G107600 chr4D 87.574 338 32 2 224 551 123424415 123424752 3.010000e-102 383.0
11 TraesCS1B01G107600 chr4D 96.471 85 3 0 1 85 301303548 301303632 2.000000e-29 141.0
12 TraesCS1B01G107600 chr6B 87.278 338 33 2 224 551 596621024 596621361 1.400000e-100 377.0
13 TraesCS1B01G107600 chrUn 86.982 338 34 2 224 551 282363995 282363658 6.520000e-99 372.0
14 TraesCS1B01G107600 chrUn 86.686 338 35 2 224 551 86509311 86508974 3.030000e-97 366.0
15 TraesCS1B01G107600 chrUn 86.686 338 35 2 224 551 260203026 260202689 3.030000e-97 366.0
16 TraesCS1B01G107600 chrUn 91.189 227 20 0 224 450 397470771 397470545 5.180000e-80 309.0
17 TraesCS1B01G107600 chr7A 86.982 338 34 2 224 551 4971353 4971690 6.520000e-99 372.0
18 TraesCS1B01G107600 chr7A 94.318 88 5 0 1 88 690071190 690071277 9.310000e-28 135.0
19 TraesCS1B01G107600 chr6A 95.402 87 4 0 1 87 535895414 535895328 7.200000e-29 139.0
20 TraesCS1B01G107600 chr5A 96.429 84 3 0 1 84 469044795 469044878 7.200000e-29 139.0
21 TraesCS1B01G107600 chr3A 95.402 87 4 0 1 87 661003186 661003272 7.200000e-29 139.0
22 TraesCS1B01G107600 chr5B 95.349 86 4 0 1 86 405523956 405524041 2.590000e-28 137.0
23 TraesCS1B01G107600 chr2A 92.553 94 6 1 1 94 578488994 578489086 3.350000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G107600 chr1B 119764155 119769483 5328 False 9841.000000 9841 100.000000 1 5329 1 chr1B.!!$F2 5328
1 TraesCS1B01G107600 chr1A 77069152 77073458 4306 False 3057.150000 6043 92.413000 488 4817 2 chr1A.!!$F3 4329
2 TraesCS1B01G107600 chr1A 77058889 77060273 1384 False 256.800000 422 90.825000 81 532 2 chr1A.!!$F2 451
3 TraesCS1B01G107600 chr1D 76449284 76455172 5888 False 2374.666667 6041 89.423333 157 5243 3 chr1D.!!$F1 5086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.178068 TAAACCATCTGAGCCGAGCC 59.822 55.0 0.00 0.00 0.00 4.70 F
743 2311 0.180171 TGTCCAGTGGTCACTTGTGG 59.820 55.0 9.54 1.58 40.20 4.17 F
2189 3805 0.671472 ACGCCGGTTAGTTACAAGGC 60.671 55.0 1.90 7.64 44.03 4.35 F
2803 4421 0.161870 GAGAAGTTCAGTTCGTGCGC 59.838 55.0 0.00 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 3262 0.040958 CAGCGAACCAAGACAAGCAC 60.041 55.0 0.0 0.00 0.00 4.40 R
2345 3961 0.036388 TGGCTTTAGCTGAGGGAACG 60.036 55.0 0.0 0.00 41.70 3.95 R
3845 5479 0.036952 CCACCTGAGCGTGACAGAAT 60.037 55.0 0.0 0.00 37.54 2.40 R
4395 6030 0.259938 ATGGGCAAGATTCTGTCCCC 59.740 55.0 16.6 12.79 40.63 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.278734 GTTTGACTTTGACTAAAGCTAATATGC 57.721 33.333 0.00 0.00 45.72 3.14
59 60 7.234187 TGACTTTGACTAAAGCTAATATGCG 57.766 36.000 0.00 0.00 45.72 4.73
60 61 6.257849 TGACTTTGACTAAAGCTAATATGCGG 59.742 38.462 0.00 0.00 45.72 5.69
61 62 6.346096 ACTTTGACTAAAGCTAATATGCGGA 58.654 36.000 0.00 0.00 45.72 5.54
62 63 6.480320 ACTTTGACTAAAGCTAATATGCGGAG 59.520 38.462 0.00 0.00 45.72 4.63
63 64 5.531122 TGACTAAAGCTAATATGCGGAGT 57.469 39.130 0.00 0.00 38.13 3.85
64 65 6.644248 TGACTAAAGCTAATATGCGGAGTA 57.356 37.500 0.00 0.00 38.13 2.59
65 66 7.046292 TGACTAAAGCTAATATGCGGAGTAA 57.954 36.000 0.00 0.00 38.13 2.24
66 67 7.494211 TGACTAAAGCTAATATGCGGAGTAAA 58.506 34.615 0.00 0.00 38.13 2.01
67 68 8.148351 TGACTAAAGCTAATATGCGGAGTAAAT 58.852 33.333 0.00 0.00 38.13 1.40
68 69 9.635520 GACTAAAGCTAATATGCGGAGTAAATA 57.364 33.333 0.00 0.00 38.13 1.40
69 70 9.991906 ACTAAAGCTAATATGCGGAGTAAATAA 57.008 29.630 0.00 0.00 38.13 1.40
73 74 9.946165 AAGCTAATATGCGGAGTAAATAAAAAC 57.054 29.630 0.00 0.00 38.13 2.43
74 75 8.280497 AGCTAATATGCGGAGTAAATAAAAACG 58.720 33.333 0.00 0.00 38.13 3.60
75 76 7.532884 GCTAATATGCGGAGTAAATAAAAACGG 59.467 37.037 0.00 0.00 0.00 4.44
76 77 7.556733 AATATGCGGAGTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
77 78 4.932268 TGCGGAGTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
78 79 3.685756 TGCGGAGTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
79 80 3.064408 GCGGAGTAAATAAAAACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
112 113 5.667626 AGAGAAGGCCTAATAAACCATCTGA 59.332 40.000 5.16 0.00 31.95 3.27
119 120 2.246719 ATAAACCATCTGAGCCGAGC 57.753 50.000 0.00 0.00 0.00 5.03
120 121 0.178068 TAAACCATCTGAGCCGAGCC 59.822 55.000 0.00 0.00 0.00 4.70
143 144 2.906691 CTGGAAGCATCTCCGAGATT 57.093 50.000 8.26 0.00 38.44 2.40
145 146 1.067669 TGGAAGCATCTCCGAGATTCG 59.932 52.381 8.26 0.02 38.44 3.34
146 147 1.067821 GGAAGCATCTCCGAGATTCGT 59.932 52.381 8.26 2.13 38.40 3.85
147 148 2.482142 GGAAGCATCTCCGAGATTCGTT 60.482 50.000 8.26 2.71 38.40 3.85
148 149 2.500509 AGCATCTCCGAGATTCGTTC 57.499 50.000 8.26 0.00 38.40 3.95
149 150 1.751351 AGCATCTCCGAGATTCGTTCA 59.249 47.619 8.26 0.00 38.40 3.18
150 151 2.363680 AGCATCTCCGAGATTCGTTCAT 59.636 45.455 8.26 0.00 38.40 2.57
151 152 3.570125 AGCATCTCCGAGATTCGTTCATA 59.430 43.478 8.26 0.00 38.40 2.15
152 153 4.038042 AGCATCTCCGAGATTCGTTCATAA 59.962 41.667 8.26 0.00 38.40 1.90
153 154 4.149046 GCATCTCCGAGATTCGTTCATAAC 59.851 45.833 8.26 0.00 38.40 1.89
154 155 4.303086 TCTCCGAGATTCGTTCATAACC 57.697 45.455 0.00 0.00 38.40 2.85
155 156 3.697542 TCTCCGAGATTCGTTCATAACCA 59.302 43.478 0.00 0.00 38.40 3.67
170 1094 7.274033 CGTTCATAACCAACTTATAACGTCTCA 59.726 37.037 0.00 0.00 33.20 3.27
175 1099 4.181578 CCAACTTATAACGTCTCACCCTG 58.818 47.826 0.00 0.00 0.00 4.45
216 1140 4.965062 TCTCGCAAACCGAACAAATATTC 58.035 39.130 0.00 0.00 46.81 1.75
229 1153 7.995998 CCGAACAAATATTCAAACTTGTTTTCG 59.004 33.333 3.21 3.71 40.97 3.46
254 1178 7.011482 CGCTTATGCTTAGTTAAGTGAGGATTT 59.989 37.037 13.16 0.00 37.88 2.17
259 1183 9.905713 ATGCTTAGTTAAGTGAGGATTTCATTA 57.094 29.630 3.59 0.00 38.29 1.90
260 1184 9.383519 TGCTTAGTTAAGTGAGGATTTCATTAG 57.616 33.333 4.42 0.00 38.29 1.73
273 1197 9.362539 GAGGATTTCATTAGAAGTAACGTAACA 57.637 33.333 0.00 0.00 34.71 2.41
298 1222 3.499918 AGCACCATCTTCAAAACTTCTCG 59.500 43.478 0.00 0.00 0.00 4.04
322 1246 7.717875 TCGGGATTCGAAGTTTATGGATAAAAT 59.282 33.333 3.35 0.00 45.86 1.82
419 1345 2.435805 TCAGGCCCTATCATGAGTGAAC 59.564 50.000 0.00 0.00 38.01 3.18
436 1362 7.028962 TGAGTGAACAGAAAACTGAAAATGTG 58.971 34.615 0.00 0.00 0.00 3.21
441 1367 7.648908 TGAACAGAAAACTGAAAATGTGCATAG 59.351 33.333 0.00 0.00 0.00 2.23
447 1373 5.458041 ACTGAAAATGTGCATAGCTGTTT 57.542 34.783 0.00 0.00 0.00 2.83
496 1432 2.079925 GGACAAGCCTTCTTAGTGCTG 58.920 52.381 0.00 0.00 35.08 4.41
516 1452 3.081061 TGGCTGAACGCAAAGTAATGAT 58.919 40.909 0.00 0.00 41.67 2.45
529 2095 5.574815 AAGTAATGATTTTTGTGCAACGC 57.425 34.783 0.00 0.00 42.39 4.84
540 2106 1.454847 TGCAACGCCAAAAGGGTCT 60.455 52.632 0.00 0.00 41.60 3.85
553 2119 3.594603 AAGGGTCTTGTCGTAGTGATG 57.405 47.619 0.00 0.00 0.00 3.07
559 2125 5.224888 GGTCTTGTCGTAGTGATGTTTACA 58.775 41.667 0.00 0.00 0.00 2.41
577 2143 8.685536 TGTTTACAACAAGCTAATGAGCAGCG 62.686 42.308 4.45 0.00 43.37 5.18
592 2158 0.249073 CAGCGGATCACCTAGTTCGG 60.249 60.000 0.00 0.00 0.00 4.30
657 2225 2.969628 ACCGCAATGTTTGAACCAAA 57.030 40.000 0.00 0.00 0.00 3.28
694 2262 2.902486 TGAAAAATTGGGCATGGCTGTA 59.098 40.909 19.78 5.14 0.00 2.74
719 2287 1.806542 GAGCCAAAATGAGAAGTCGCA 59.193 47.619 0.00 0.00 0.00 5.10
743 2311 0.180171 TGTCCAGTGGTCACTTGTGG 59.820 55.000 9.54 1.58 40.20 4.17
748 2316 2.615493 CCAGTGGTCACTTGTGGTATCC 60.615 54.545 0.00 0.91 40.20 2.59
749 2317 2.303022 CAGTGGTCACTTGTGGTATCCT 59.697 50.000 0.20 0.00 40.20 3.24
805 2374 8.190784 ACTTTTGGCTGATAGTAAAATATGTGC 58.809 33.333 0.00 0.00 0.00 4.57
806 2375 5.922739 TGGCTGATAGTAAAATATGTGCG 57.077 39.130 0.00 0.00 0.00 5.34
807 2376 4.754618 TGGCTGATAGTAAAATATGTGCGG 59.245 41.667 0.00 0.00 0.00 5.69
808 2377 4.378459 GGCTGATAGTAAAATATGTGCGGC 60.378 45.833 0.00 0.00 0.00 6.53
866 2437 3.949586 TTGACCCAGCATATCATTGGA 57.050 42.857 0.00 0.00 33.76 3.53
867 2438 4.458256 TTGACCCAGCATATCATTGGAT 57.542 40.909 0.00 0.00 37.55 3.41
868 2439 4.458256 TGACCCAGCATATCATTGGATT 57.542 40.909 0.00 0.00 34.89 3.01
869 2440 4.806892 TGACCCAGCATATCATTGGATTT 58.193 39.130 0.00 0.00 34.89 2.17
870 2441 4.828939 TGACCCAGCATATCATTGGATTTC 59.171 41.667 0.00 0.00 34.89 2.17
871 2442 4.154942 ACCCAGCATATCATTGGATTTCC 58.845 43.478 0.00 0.00 34.89 3.13
872 2443 4.140853 ACCCAGCATATCATTGGATTTCCT 60.141 41.667 0.00 0.00 34.89 3.36
873 2444 5.074929 ACCCAGCATATCATTGGATTTCCTA 59.925 40.000 0.00 0.00 34.89 2.94
874 2445 5.416952 CCCAGCATATCATTGGATTTCCTAC 59.583 44.000 0.00 0.00 34.89 3.18
875 2446 5.416952 CCAGCATATCATTGGATTTCCTACC 59.583 44.000 0.00 0.00 34.89 3.18
897 2468 6.739112 ACCTTTTTCTATTGTTGTTGAGAGC 58.261 36.000 0.00 0.00 0.00 4.09
949 2522 1.447140 TGTTCCCTCGCGGATTTCG 60.447 57.895 6.13 0.00 41.63 3.46
980 2553 1.317613 AGCGGCAAAAGTCATCACAA 58.682 45.000 1.45 0.00 0.00 3.33
1024 2597 2.496871 GCATTCCACATTCCACATTCCA 59.503 45.455 0.00 0.00 0.00 3.53
1046 2622 1.178276 CTCCACTTGTACTCGGCTCT 58.822 55.000 0.00 0.00 0.00 4.09
1049 2625 0.888619 CACTTGTACTCGGCTCTCCA 59.111 55.000 0.00 0.00 0.00 3.86
1112 2688 2.801631 CCTCACATCCTCCTCGGCC 61.802 68.421 0.00 0.00 0.00 6.13
1126 2702 4.890306 GGCCCCTCCTCCTCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
1127 2703 4.890306 GCCCCTCCTCCTCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
1128 2704 4.179599 CCCCTCCTCCTCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1241 2830 1.067071 CACCTTGTACGTTCCTCCTCC 60.067 57.143 0.00 0.00 0.00 4.30
1287 2887 3.718395 TTTGGCCGGCGGACCATA 61.718 61.111 32.27 26.76 35.42 2.74
1297 2898 2.717044 CGGACCATACGCACTCCCA 61.717 63.158 0.00 0.00 0.00 4.37
1315 2916 1.738099 ATGGTTCTGTCGAGTGCGC 60.738 57.895 0.00 0.00 37.46 6.09
1317 2918 2.089349 GGTTCTGTCGAGTGCGCTC 61.089 63.158 17.53 17.53 38.35 5.03
1375 2981 2.236146 TCAACCGTGCTAGATGATTGGT 59.764 45.455 0.00 0.00 0.00 3.67
1441 3047 3.134804 ACCAGTAAAGTCACACTCTTGCT 59.865 43.478 0.00 0.00 0.00 3.91
1648 3262 5.613358 AAAAGCAGGAGAAATAGTTGTCG 57.387 39.130 0.00 0.00 0.00 4.35
1802 3418 9.566432 AGGAATAGTATAAAAGCAGGAGAAATG 57.434 33.333 0.00 0.00 0.00 2.32
2000 3616 3.815401 CTCAGTTCGATCCTTTGGTTTGT 59.185 43.478 0.00 0.00 0.00 2.83
2024 3640 2.952310 AGAAAGAACAAACCTGGACTGC 59.048 45.455 0.00 0.00 0.00 4.40
2160 3776 2.266554 GATTCTCTGCTGGTGTTCTCG 58.733 52.381 0.00 0.00 0.00 4.04
2178 3794 1.301479 GACTGGAAGAACGCCGGTT 60.301 57.895 1.90 0.00 44.84 4.44
2189 3805 0.671472 ACGCCGGTTAGTTACAAGGC 60.671 55.000 1.90 7.64 44.03 4.35
2345 3961 3.386768 TGTTGTTCAGGAGACAGCTAC 57.613 47.619 0.00 0.00 0.00 3.58
2464 4080 1.862201 TGTTACTTTGTCTTCGTGCGG 59.138 47.619 0.00 0.00 0.00 5.69
2502 4118 2.044492 TCAGGGTCCTCATAAGGTCAGT 59.956 50.000 0.00 0.00 43.82 3.41
2505 4121 3.916989 AGGGTCCTCATAAGGTCAGTTTT 59.083 43.478 0.00 0.00 43.82 2.43
2507 4123 4.700692 GGGTCCTCATAAGGTCAGTTTTTC 59.299 45.833 0.00 0.00 43.82 2.29
2511 4127 4.760204 CCTCATAAGGTCAGTTTTTCCGTT 59.240 41.667 0.00 0.00 37.94 4.44
2516 4132 2.943033 AGGTCAGTTTTTCCGTTGACAG 59.057 45.455 5.91 0.00 41.22 3.51
2543 4159 4.336713 GGGTGCTCAGGAAGTGATTAATTC 59.663 45.833 0.00 0.00 33.51 2.17
2544 4160 4.943705 GGTGCTCAGGAAGTGATTAATTCA 59.056 41.667 0.00 0.00 33.51 2.57
2585 4201 1.821666 GCTTGGGGTAAGACAAGGCAA 60.822 52.381 6.55 0.00 43.21 4.52
2586 4202 1.886542 CTTGGGGTAAGACAAGGCAAC 59.113 52.381 0.00 0.00 40.20 4.17
2602 4218 1.754201 GCAACCCTTGGTGACCTTCTT 60.754 52.381 2.11 0.00 35.34 2.52
2611 4227 4.503714 TGGTGACCTTCTTTTTCTCTGT 57.496 40.909 2.11 0.00 0.00 3.41
2612 4228 4.855340 TGGTGACCTTCTTTTTCTCTGTT 58.145 39.130 2.11 0.00 0.00 3.16
2613 4229 4.881850 TGGTGACCTTCTTTTTCTCTGTTC 59.118 41.667 2.11 0.00 0.00 3.18
2629 4245 3.632145 TCTGTTCTTCTTTTTGACAGGGC 59.368 43.478 0.00 0.00 0.00 5.19
2643 4259 4.326826 TGACAGGGCTTTGTTAAGATCAG 58.673 43.478 0.00 0.00 32.92 2.90
2668 4286 9.686683 AGAGTATTGCTTAGGTGTTTTATTGAT 57.313 29.630 0.00 0.00 0.00 2.57
2681 4299 8.229811 GGTGTTTTATTGATTTCATTGCTTTCC 58.770 33.333 0.00 0.00 0.00 3.13
2687 4305 6.864360 TTGATTTCATTGCTTTCCTTTTGG 57.136 33.333 0.00 0.00 42.21 3.28
2726 4344 8.948145 GTGAAGATAATCTATAGTAGCGGAGAA 58.052 37.037 0.00 0.00 0.00 2.87
2799 4417 4.825546 TTACTCGAGAAGTTCAGTTCGT 57.174 40.909 21.68 0.00 39.55 3.85
2803 4421 0.161870 GAGAAGTTCAGTTCGTGCGC 59.838 55.000 0.00 0.00 0.00 6.09
2808 4426 1.333619 AGTTCAGTTCGTGCGCAAAAT 59.666 42.857 14.00 0.00 0.00 1.82
2815 4433 1.082431 CGTGCGCAAAATCACCGAA 60.082 52.632 14.00 0.00 0.00 4.30
2927 4548 6.058833 TGCTTGGTTTCAGTGTAGTTCATTA 58.941 36.000 0.00 0.00 0.00 1.90
2928 4549 6.204688 TGCTTGGTTTCAGTGTAGTTCATTAG 59.795 38.462 0.00 0.00 0.00 1.73
2932 4553 7.450074 TGGTTTCAGTGTAGTTCATTAGTGAT 58.550 34.615 0.00 0.00 33.56 3.06
3037 4658 9.618890 TGGTATGAAGAGAATGGAAAAGATAAG 57.381 33.333 0.00 0.00 0.00 1.73
3039 4660 7.579761 ATGAAGAGAATGGAAAAGATAAGCC 57.420 36.000 0.00 0.00 0.00 4.35
3086 4707 1.013596 CGCTTCCGGTATCATGCAAA 58.986 50.000 0.00 0.00 0.00 3.68
3109 4730 5.014858 ACTATCGGTCACTTCAAACTAGGA 58.985 41.667 0.00 0.00 0.00 2.94
3148 4769 7.398289 AAGAGATCTTGAATTCCCATATCCA 57.602 36.000 2.27 0.00 34.38 3.41
3178 4799 1.561076 ACCATCAAGCCTGCAGATGTA 59.439 47.619 17.39 0.00 37.93 2.29
3187 4808 2.625737 CCTGCAGATGTAGTGGTGAAG 58.374 52.381 17.39 0.00 0.00 3.02
3296 4917 5.696724 AGTACATTTCCTTGTCGAACTCTTG 59.303 40.000 0.00 0.00 0.00 3.02
3306 4927 3.325425 TGTCGAACTCTTGGATTAACCCA 59.675 43.478 0.00 0.00 38.00 4.51
3309 4930 5.064834 GTCGAACTCTTGGATTAACCCATTC 59.935 44.000 0.00 0.00 35.87 2.67
3321 4942 6.310224 GGATTAACCCATTCAATGTTTGTTCG 59.690 38.462 0.00 0.00 0.00 3.95
3331 4955 5.996219 TCAATGTTTGTTCGTACCATTCTG 58.004 37.500 0.00 0.00 0.00 3.02
3332 4956 5.529430 TCAATGTTTGTTCGTACCATTCTGT 59.471 36.000 0.00 0.00 0.00 3.41
3333 4957 5.607119 ATGTTTGTTCGTACCATTCTGTC 57.393 39.130 0.00 0.00 0.00 3.51
3345 4969 7.766738 TCGTACCATTCTGTCTTTTAATATGCA 59.233 33.333 0.00 0.00 0.00 3.96
3396 5027 2.006888 CCCAATACTGCACGTTCGAAT 58.993 47.619 0.00 0.00 0.00 3.34
3408 5039 2.170607 ACGTTCGAATTGGGATCTGGAT 59.829 45.455 0.00 0.00 0.00 3.41
3410 5041 3.493350 CGTTCGAATTGGGATCTGGATCT 60.493 47.826 0.00 0.00 37.92 2.75
3430 5061 6.593382 GGATCTCATTTATGATTTCCGAGGAG 59.407 42.308 0.00 0.00 36.02 3.69
3486 5117 7.445121 AGATCAATCGTCTATTTTGGATAGCA 58.555 34.615 0.00 0.00 0.00 3.49
3524 5155 4.227982 TGATTCATCCTTGTGGAATGGAGA 59.772 41.667 0.00 0.00 46.80 3.71
3542 5173 1.134580 AGAGGTCACTTCATGCATCCG 60.135 52.381 0.00 0.00 0.00 4.18
3547 5178 2.076100 TCACTTCATGCATCCGTTGAC 58.924 47.619 0.00 0.00 0.00 3.18
3611 5242 2.040544 GCATGGGTGGACCGACTTG 61.041 63.158 0.00 0.00 44.64 3.16
3619 5250 2.289195 GGTGGACCGACTTGTTACATCA 60.289 50.000 0.00 0.00 0.00 3.07
3622 5253 2.289195 GGACCGACTTGTTACATCACCA 60.289 50.000 0.00 0.00 0.00 4.17
3625 5256 4.394729 ACCGACTTGTTACATCACCAATT 58.605 39.130 0.00 0.00 0.00 2.32
3664 5295 2.222027 GTGAGGTTTGACAACTGGGAG 58.778 52.381 0.00 0.00 32.90 4.30
3681 5312 3.139584 TGGGAGATGGAAGGTATACTCGA 59.860 47.826 2.25 0.00 0.00 4.04
3682 5313 4.202684 TGGGAGATGGAAGGTATACTCGAT 60.203 45.833 2.25 0.00 0.00 3.59
3683 5314 4.158764 GGGAGATGGAAGGTATACTCGATG 59.841 50.000 2.25 0.00 0.00 3.84
3697 5331 8.350722 GGTATACTCGATGAACTCTTCACATAA 58.649 37.037 2.25 0.00 43.48 1.90
3698 5332 9.171701 GTATACTCGATGAACTCTTCACATAAC 57.828 37.037 0.00 0.00 43.48 1.89
3699 5333 6.025749 ACTCGATGAACTCTTCACATAACA 57.974 37.500 0.00 0.00 43.48 2.41
3712 5346 8.684386 TCTTCACATAACAAAGTTATTCCACA 57.316 30.769 0.00 0.00 0.00 4.17
3737 5371 7.592533 CACCATCAGTTATCAGTTTGTTCAAAG 59.407 37.037 0.00 0.00 0.00 2.77
3738 5372 7.502226 ACCATCAGTTATCAGTTTGTTCAAAGA 59.498 33.333 0.00 0.00 0.00 2.52
3740 5374 9.338291 CATCAGTTATCAGTTTGTTCAAAGATG 57.662 33.333 0.00 2.08 0.00 2.90
3741 5375 7.362662 TCAGTTATCAGTTTGTTCAAAGATGC 58.637 34.615 0.00 0.00 0.00 3.91
3749 5383 7.013178 TCAGTTTGTTCAAAGATGCTTGACATA 59.987 33.333 0.00 0.00 39.84 2.29
3805 5439 0.304705 GGATGCGCCACAATTACTCG 59.695 55.000 4.18 0.00 36.34 4.18
3806 5440 0.316196 GATGCGCCACAATTACTCGC 60.316 55.000 4.18 0.00 45.23 5.03
3814 5448 2.552315 CCACAATTACTCGCCTTGTGTT 59.448 45.455 12.15 0.00 45.17 3.32
3825 5459 3.932710 TCGCCTTGTGTTATCTCATTGAC 59.067 43.478 0.00 0.00 0.00 3.18
3842 5476 6.169419 CATTGACTTGTGTGTCGATGTTAT 57.831 37.500 13.72 0.00 46.23 1.89
3845 5479 5.293560 TGACTTGTGTGTCGATGTTATTGA 58.706 37.500 0.00 0.00 39.64 2.57
3855 5489 5.288472 TGTCGATGTTATTGATTCTGTCACG 59.712 40.000 0.00 0.00 36.32 4.35
3864 5498 0.036952 ATTCTGTCACGCTCAGGTGG 60.037 55.000 3.06 0.00 38.46 4.61
3943 5578 0.098728 CCCCTAAATTCTTGCGCACG 59.901 55.000 11.12 9.20 0.00 5.34
3980 5615 3.980646 TCTTTTGCGCACAGTTTATGT 57.019 38.095 11.12 0.00 45.43 2.29
4057 5692 0.401738 ACACATCCACAAGACCTGGG 59.598 55.000 0.00 0.00 0.00 4.45
4130 5765 1.416030 ACCACTCGCCATATATGCACA 59.584 47.619 7.24 0.00 0.00 4.57
4173 5808 8.837389 GGATAGATTTACAAATGTACTGGTTCC 58.163 37.037 0.00 0.00 28.52 3.62
4262 5897 3.943381 TCTTCATGTTGATCTCATGCACC 59.057 43.478 19.31 0.00 41.40 5.01
4349 5984 6.884295 ACTGCACCAGTATGTTGTAATTACAT 59.116 34.615 18.69 8.23 43.46 2.29
4351 5986 8.972458 TGCACCAGTATGTTGTAATTACATAT 57.028 30.769 18.69 16.96 39.78 1.78
4367 6002 8.826546 AATTACATATAATCATTTCGCGATGC 57.173 30.769 10.88 0.00 30.27 3.91
4395 6030 1.079612 TCACGAGCTGGTGCATCTG 60.080 57.895 22.71 0.00 42.74 2.90
4416 6051 1.396653 GGACAGAATCTTGCCCATGG 58.603 55.000 4.14 4.14 0.00 3.66
4441 6076 4.762251 AGTTGAAGCTGTTAATCTGTTCCC 59.238 41.667 0.00 0.00 0.00 3.97
4598 6236 2.551459 CCTTGCTTGTTCAACCTCTCAG 59.449 50.000 0.00 0.00 0.00 3.35
4665 6319 1.915350 GCAACATTCATGACATGTGCG 59.085 47.619 14.98 14.72 34.97 5.34
4699 6513 7.725251 ACACAAAATGAAATACAGGACAACAT 58.275 30.769 0.00 0.00 0.00 2.71
4781 6595 3.847602 CCTGCAGGCTCCGAGGAG 61.848 72.222 22.33 14.53 44.56 3.69
4782 6596 3.847602 CTGCAGGCTCCGAGGAGG 61.848 72.222 19.64 5.53 42.19 4.30
4837 6651 4.719369 GACCAAGCTCGCCGTCGT 62.719 66.667 0.00 0.00 36.96 4.34
4846 6660 4.394078 CGCCGTCGTCGAACTCCA 62.394 66.667 2.98 0.00 39.71 3.86
4853 6667 2.207590 GTCGTCGAACTCCAGGTTTTT 58.792 47.619 0.00 0.00 38.41 1.94
4867 6681 2.698274 AGGTTTTTGGAATTTCGCTGGT 59.302 40.909 0.00 0.00 0.00 4.00
4881 6695 2.047655 TGGTGTGACCGCGATTCC 60.048 61.111 8.23 1.55 42.58 3.01
4913 6728 1.078356 TCCTCGCGAGTGCTCTACT 60.078 57.895 32.41 0.00 44.02 2.57
4927 6742 2.736978 CTCTACTGCATCATGGTCGTC 58.263 52.381 0.00 0.00 0.00 4.20
4933 6748 2.173669 CATCATGGTCGTCCGCCAC 61.174 63.158 5.26 0.00 39.03 5.01
4936 6751 2.100631 CATGGTCGTCCGCCACTTC 61.101 63.158 5.26 0.00 39.03 3.01
4948 6763 1.161563 GCCACTTCGGTTTTGGACGA 61.162 55.000 0.00 0.00 36.97 4.20
4974 6789 1.811359 AGCTCAGCAGTGATCTTTTGC 59.189 47.619 0.00 8.11 38.09 3.68
5001 6816 1.810151 TCGAAAGGAATCTTTTGCCGG 59.190 47.619 0.00 0.00 42.72 6.13
5019 6834 2.435059 GAGCTTCTTTCGGCCGCT 60.435 61.111 23.51 9.98 0.00 5.52
5027 6842 3.481112 TCTTTCGGCCGCTTAAATTTC 57.519 42.857 23.51 0.00 0.00 2.17
5034 6849 1.531883 GCCGCTTAAATTTCAGAGCCG 60.532 52.381 3.51 4.81 0.00 5.52
5121 6936 6.597562 TTAAGTGCTTAACTCCTCAAAAGGA 58.402 36.000 0.68 0.00 41.25 3.36
5143 6958 6.542735 AGGAGATCTTTTAACGAATTAAGCCC 59.457 38.462 0.00 0.00 31.90 5.19
5149 6964 8.036273 TCTTTTAACGAATTAAGCCCTTGTAG 57.964 34.615 0.00 0.00 31.90 2.74
5166 6981 4.808767 TGTAGGGGTTCAGCTAGAGATA 57.191 45.455 0.00 0.00 0.00 1.98
5175 6990 6.066032 GGTTCAGCTAGAGATACTCTAAGGT 58.934 44.000 9.31 6.91 41.74 3.50
5179 6994 7.221450 TCAGCTAGAGATACTCTAAGGTCTTC 58.779 42.308 9.31 0.00 41.74 2.87
5193 7008 5.934402 AAGGTCTTCCACTATGTTATCGT 57.066 39.130 0.00 0.00 35.89 3.73
5197 7012 4.270325 GTCTTCCACTATGTTATCGTTGCC 59.730 45.833 0.00 0.00 0.00 4.52
5212 7027 4.804108 TCGTTGCCATATTGGTCAAAAAG 58.196 39.130 5.40 2.60 40.46 2.27
5215 7030 5.336055 CGTTGCCATATTGGTCAAAAAGGTA 60.336 40.000 5.40 0.00 40.46 3.08
5229 7044 2.691409 AAGGTACCACATCATCACCG 57.309 50.000 15.94 0.00 34.36 4.94
5233 7048 2.483876 GTACCACATCATCACCGATGG 58.516 52.381 4.24 0.00 45.87 3.51
5235 7050 0.179037 CCACATCATCACCGATGGCT 60.179 55.000 4.24 0.00 45.87 4.75
5236 7051 0.942252 CACATCATCACCGATGGCTG 59.058 55.000 4.24 5.36 45.87 4.85
5243 7058 1.808411 TCACCGATGGCTGAAGAAAC 58.192 50.000 0.00 0.00 0.00 2.78
5244 7059 1.071542 TCACCGATGGCTGAAGAAACA 59.928 47.619 0.00 0.00 0.00 2.83
5245 7060 1.197721 CACCGATGGCTGAAGAAACAC 59.802 52.381 0.00 0.00 0.00 3.32
5246 7061 0.443869 CCGATGGCTGAAGAAACACG 59.556 55.000 0.00 0.00 0.00 4.49
5247 7062 0.443869 CGATGGCTGAAGAAACACGG 59.556 55.000 0.00 0.00 0.00 4.94
5248 7063 1.523758 GATGGCTGAAGAAACACGGT 58.476 50.000 0.00 0.00 0.00 4.83
5249 7064 1.880027 GATGGCTGAAGAAACACGGTT 59.120 47.619 0.00 0.00 0.00 4.44
5250 7065 1.757682 TGGCTGAAGAAACACGGTTT 58.242 45.000 2.23 2.23 0.00 3.27
5251 7066 2.096248 TGGCTGAAGAAACACGGTTTT 58.904 42.857 3.96 0.00 0.00 2.43
5252 7067 2.494073 TGGCTGAAGAAACACGGTTTTT 59.506 40.909 3.96 0.00 0.00 1.94
5253 7068 2.857748 GGCTGAAGAAACACGGTTTTTG 59.142 45.455 0.00 0.00 0.00 2.44
5254 7069 3.428316 GGCTGAAGAAACACGGTTTTTGA 60.428 43.478 0.00 0.00 0.00 2.69
5255 7070 3.791353 GCTGAAGAAACACGGTTTTTGAG 59.209 43.478 0.00 5.57 0.00 3.02
5256 7071 4.438200 GCTGAAGAAACACGGTTTTTGAGA 60.438 41.667 0.00 0.00 0.00 3.27
5257 7072 5.229921 TGAAGAAACACGGTTTTTGAGAG 57.770 39.130 0.00 0.00 0.00 3.20
5258 7073 4.938832 TGAAGAAACACGGTTTTTGAGAGA 59.061 37.500 0.00 0.00 0.00 3.10
5259 7074 5.413213 TGAAGAAACACGGTTTTTGAGAGAA 59.587 36.000 0.00 0.00 0.00 2.87
5260 7075 5.485662 AGAAACACGGTTTTTGAGAGAAG 57.514 39.130 0.00 0.00 0.00 2.85
5261 7076 5.183228 AGAAACACGGTTTTTGAGAGAAGA 58.817 37.500 0.00 0.00 0.00 2.87
5262 7077 5.646360 AGAAACACGGTTTTTGAGAGAAGAA 59.354 36.000 0.00 0.00 0.00 2.52
5263 7078 5.890424 AACACGGTTTTTGAGAGAAGAAA 57.110 34.783 0.00 0.00 0.00 2.52
5264 7079 5.890424 ACACGGTTTTTGAGAGAAGAAAA 57.110 34.783 0.00 0.00 0.00 2.29
5265 7080 6.262193 ACACGGTTTTTGAGAGAAGAAAAA 57.738 33.333 0.00 0.00 0.00 1.94
5282 7097 3.733443 AAAAATTATGGCGGATCTGGC 57.267 42.857 20.82 20.82 0.00 4.85
5287 7102 4.478371 TGGCGGATCTGGCAGCTG 62.478 66.667 25.81 10.11 39.79 4.24
5288 7103 4.479993 GGCGGATCTGGCAGCTGT 62.480 66.667 22.49 0.00 0.00 4.40
5289 7104 2.501128 GCGGATCTGGCAGCTGTA 59.499 61.111 16.64 4.03 0.00 2.74
5290 7105 1.070445 GCGGATCTGGCAGCTGTAT 59.930 57.895 16.64 4.17 0.00 2.29
5291 7106 0.533755 GCGGATCTGGCAGCTGTATT 60.534 55.000 16.64 0.00 0.00 1.89
5292 7107 1.224075 CGGATCTGGCAGCTGTATTG 58.776 55.000 16.64 3.79 0.00 1.90
5293 7108 1.473965 CGGATCTGGCAGCTGTATTGT 60.474 52.381 16.64 0.00 0.00 2.71
5294 7109 2.216898 GGATCTGGCAGCTGTATTGTC 58.783 52.381 16.64 8.59 0.00 3.18
5295 7110 2.420547 GGATCTGGCAGCTGTATTGTCA 60.421 50.000 16.64 0.00 0.00 3.58
5296 7111 2.099141 TCTGGCAGCTGTATTGTCAC 57.901 50.000 16.64 0.00 0.00 3.67
5297 7112 0.723414 CTGGCAGCTGTATTGTCACG 59.277 55.000 16.64 0.00 0.00 4.35
5298 7113 0.673333 TGGCAGCTGTATTGTCACGG 60.673 55.000 16.64 0.00 0.00 4.94
5299 7114 0.673644 GGCAGCTGTATTGTCACGGT 60.674 55.000 16.64 0.00 0.00 4.83
5300 7115 1.156736 GCAGCTGTATTGTCACGGTT 58.843 50.000 16.64 0.00 0.00 4.44
5301 7116 2.343101 GCAGCTGTATTGTCACGGTTA 58.657 47.619 16.64 0.00 0.00 2.85
5302 7117 2.093783 GCAGCTGTATTGTCACGGTTAC 59.906 50.000 16.64 0.00 0.00 2.50
5303 7118 2.671396 CAGCTGTATTGTCACGGTTACC 59.329 50.000 5.25 0.00 0.00 2.85
5304 7119 2.565834 AGCTGTATTGTCACGGTTACCT 59.434 45.455 0.00 0.00 0.00 3.08
5305 7120 2.928116 GCTGTATTGTCACGGTTACCTC 59.072 50.000 0.00 0.00 0.00 3.85
5306 7121 3.615592 GCTGTATTGTCACGGTTACCTCA 60.616 47.826 0.00 0.00 0.00 3.86
5307 7122 4.562082 CTGTATTGTCACGGTTACCTCAA 58.438 43.478 0.00 0.71 0.00 3.02
5308 7123 4.562082 TGTATTGTCACGGTTACCTCAAG 58.438 43.478 0.00 0.00 0.00 3.02
5309 7124 3.764237 ATTGTCACGGTTACCTCAAGT 57.236 42.857 0.00 0.00 0.00 3.16
5310 7125 3.547054 TTGTCACGGTTACCTCAAGTT 57.453 42.857 0.00 0.00 0.00 2.66
5311 7126 2.828877 TGTCACGGTTACCTCAAGTTG 58.171 47.619 0.00 0.00 0.00 3.16
5312 7127 2.140717 GTCACGGTTACCTCAAGTTGG 58.859 52.381 2.34 0.00 0.00 3.77
5313 7128 0.872388 CACGGTTACCTCAAGTTGGC 59.128 55.000 2.34 0.00 0.00 4.52
5314 7129 0.601841 ACGGTTACCTCAAGTTGGCG 60.602 55.000 2.34 0.00 0.00 5.69
5315 7130 0.320073 CGGTTACCTCAAGTTGGCGA 60.320 55.000 2.34 0.00 0.00 5.54
5316 7131 1.439679 GGTTACCTCAAGTTGGCGAG 58.560 55.000 2.34 0.00 0.00 5.03
5320 7135 3.927555 CCTCAAGTTGGCGAGGTAA 57.072 52.632 2.34 0.00 43.32 2.85
5321 7136 1.726853 CCTCAAGTTGGCGAGGTAAG 58.273 55.000 2.34 0.00 43.32 2.34
5322 7137 1.079503 CTCAAGTTGGCGAGGTAAGC 58.920 55.000 2.34 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.626045 AGTCAAAGTCAAACTTTCTAAACTTTG 57.374 29.630 15.91 15.91 44.47 2.77
24 25 9.783256 GCTTTAGTCAAAGTCAAACTTTCTAAA 57.217 29.630 16.96 16.96 44.47 1.85
25 26 9.174166 AGCTTTAGTCAAAGTCAAACTTTCTAA 57.826 29.630 2.19 6.04 44.47 2.10
26 27 8.732746 AGCTTTAGTCAAAGTCAAACTTTCTA 57.267 30.769 2.19 0.74 44.47 2.10
27 28 7.631717 AGCTTTAGTCAAAGTCAAACTTTCT 57.368 32.000 2.19 1.58 44.47 2.52
28 29 9.952188 ATTAGCTTTAGTCAAAGTCAAACTTTC 57.048 29.630 0.00 0.00 44.47 2.62
32 33 9.278734 GCATATTAGCTTTAGTCAAAGTCAAAC 57.721 33.333 0.00 0.00 42.71 2.93
33 34 8.175069 CGCATATTAGCTTTAGTCAAAGTCAAA 58.825 33.333 0.00 0.00 42.71 2.69
34 35 7.201609 CCGCATATTAGCTTTAGTCAAAGTCAA 60.202 37.037 0.00 0.00 42.71 3.18
35 36 6.257849 CCGCATATTAGCTTTAGTCAAAGTCA 59.742 38.462 0.00 0.00 42.71 3.41
36 37 6.479001 TCCGCATATTAGCTTTAGTCAAAGTC 59.521 38.462 0.00 0.00 42.71 3.01
37 38 6.346096 TCCGCATATTAGCTTTAGTCAAAGT 58.654 36.000 0.00 0.00 42.71 2.66
38 39 6.480320 ACTCCGCATATTAGCTTTAGTCAAAG 59.520 38.462 0.00 0.00 43.46 2.77
39 40 6.346096 ACTCCGCATATTAGCTTTAGTCAAA 58.654 36.000 0.00 0.00 0.00 2.69
40 41 5.914033 ACTCCGCATATTAGCTTTAGTCAA 58.086 37.500 0.00 0.00 0.00 3.18
41 42 5.531122 ACTCCGCATATTAGCTTTAGTCA 57.469 39.130 0.00 0.00 0.00 3.41
42 43 7.941795 TTTACTCCGCATATTAGCTTTAGTC 57.058 36.000 0.00 0.00 0.00 2.59
43 44 9.991906 TTATTTACTCCGCATATTAGCTTTAGT 57.008 29.630 0.00 0.00 0.00 2.24
47 48 9.946165 GTTTTTATTTACTCCGCATATTAGCTT 57.054 29.630 0.00 0.00 0.00 3.74
48 49 8.280497 CGTTTTTATTTACTCCGCATATTAGCT 58.720 33.333 0.00 0.00 0.00 3.32
49 50 7.532884 CCGTTTTTATTTACTCCGCATATTAGC 59.467 37.037 0.00 0.00 0.00 3.09
50 51 8.767085 TCCGTTTTTATTTACTCCGCATATTAG 58.233 33.333 0.00 0.00 0.00 1.73
51 52 8.659925 TCCGTTTTTATTTACTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
52 53 7.255001 CCTCCGTTTTTATTTACTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
53 54 6.204108 CCTCCGTTTTTATTTACTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
54 55 5.524646 CCTCCGTTTTTATTTACTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
55 56 4.334481 CCTCCGTTTTTATTTACTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
56 57 3.685756 CCTCCGTTTTTATTTACTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
57 58 3.064408 CCCTCCGTTTTTATTTACTCCGC 59.936 47.826 0.00 0.00 0.00 5.54
58 59 4.506758 TCCCTCCGTTTTTATTTACTCCG 58.493 43.478 0.00 0.00 0.00 4.63
59 60 5.494724 ACTCCCTCCGTTTTTATTTACTCC 58.505 41.667 0.00 0.00 0.00 3.85
60 61 7.099120 TGTACTCCCTCCGTTTTTATTTACTC 58.901 38.462 0.00 0.00 0.00 2.59
61 62 7.008021 TGTACTCCCTCCGTTTTTATTTACT 57.992 36.000 0.00 0.00 0.00 2.24
62 63 7.854557 ATGTACTCCCTCCGTTTTTATTTAC 57.145 36.000 0.00 0.00 0.00 2.01
63 64 9.603921 CTAATGTACTCCCTCCGTTTTTATTTA 57.396 33.333 0.00 0.00 0.00 1.40
64 65 8.323567 TCTAATGTACTCCCTCCGTTTTTATTT 58.676 33.333 0.00 0.00 0.00 1.40
65 66 7.854337 TCTAATGTACTCCCTCCGTTTTTATT 58.146 34.615 0.00 0.00 0.00 1.40
66 67 7.343833 TCTCTAATGTACTCCCTCCGTTTTTAT 59.656 37.037 0.00 0.00 0.00 1.40
67 68 6.664816 TCTCTAATGTACTCCCTCCGTTTTTA 59.335 38.462 0.00 0.00 0.00 1.52
68 69 5.482878 TCTCTAATGTACTCCCTCCGTTTTT 59.517 40.000 0.00 0.00 0.00 1.94
69 70 5.021458 TCTCTAATGTACTCCCTCCGTTTT 58.979 41.667 0.00 0.00 0.00 2.43
70 71 4.607239 TCTCTAATGTACTCCCTCCGTTT 58.393 43.478 0.00 0.00 0.00 3.60
71 72 4.246712 TCTCTAATGTACTCCCTCCGTT 57.753 45.455 0.00 0.00 0.00 4.44
72 73 3.947612 TCTCTAATGTACTCCCTCCGT 57.052 47.619 0.00 0.00 0.00 4.69
73 74 3.570550 CCTTCTCTAATGTACTCCCTCCG 59.429 52.174 0.00 0.00 0.00 4.63
74 75 3.322541 GCCTTCTCTAATGTACTCCCTCC 59.677 52.174 0.00 0.00 0.00 4.30
75 76 3.322541 GGCCTTCTCTAATGTACTCCCTC 59.677 52.174 0.00 0.00 0.00 4.30
76 77 3.051727 AGGCCTTCTCTAATGTACTCCCT 60.052 47.826 0.00 0.00 0.00 4.20
77 78 3.310193 AGGCCTTCTCTAATGTACTCCC 58.690 50.000 0.00 0.00 0.00 4.30
78 79 6.673839 ATTAGGCCTTCTCTAATGTACTCC 57.326 41.667 12.58 0.00 36.43 3.85
79 80 9.478768 GTTTATTAGGCCTTCTCTAATGTACTC 57.521 37.037 12.58 0.00 37.79 2.59
119 120 2.203126 GAGATGCTTCCAGCCCGG 60.203 66.667 0.00 0.00 41.51 5.73
120 121 2.203126 GGAGATGCTTCCAGCCCG 60.203 66.667 0.00 0.00 41.51 6.13
140 141 8.598075 ACGTTATAAGTTGGTTATGAACGAATC 58.402 33.333 10.41 0.00 38.58 2.52
142 143 7.814107 AGACGTTATAAGTTGGTTATGAACGAA 59.186 33.333 10.41 0.00 38.58 3.85
143 144 7.315142 AGACGTTATAAGTTGGTTATGAACGA 58.685 34.615 10.41 0.00 38.58 3.85
145 146 8.378421 GTGAGACGTTATAAGTTGGTTATGAAC 58.622 37.037 0.00 0.00 33.16 3.18
146 147 7.546667 GGTGAGACGTTATAAGTTGGTTATGAA 59.453 37.037 0.00 0.00 33.16 2.57
147 148 7.037438 GGTGAGACGTTATAAGTTGGTTATGA 58.963 38.462 0.00 0.00 33.16 2.15
148 149 6.257193 GGGTGAGACGTTATAAGTTGGTTATG 59.743 42.308 0.00 0.00 33.16 1.90
149 150 6.155737 AGGGTGAGACGTTATAAGTTGGTTAT 59.844 38.462 0.00 0.00 35.40 1.89
150 151 5.481473 AGGGTGAGACGTTATAAGTTGGTTA 59.519 40.000 0.00 0.00 0.00 2.85
151 152 4.285260 AGGGTGAGACGTTATAAGTTGGTT 59.715 41.667 0.00 0.00 0.00 3.67
152 153 3.836562 AGGGTGAGACGTTATAAGTTGGT 59.163 43.478 0.00 0.00 0.00 3.67
153 154 4.181578 CAGGGTGAGACGTTATAAGTTGG 58.818 47.826 0.00 0.00 0.00 3.77
154 155 3.617263 GCAGGGTGAGACGTTATAAGTTG 59.383 47.826 0.00 0.00 0.00 3.16
155 156 3.259876 TGCAGGGTGAGACGTTATAAGTT 59.740 43.478 0.00 0.00 0.00 2.66
186 1110 4.989797 TGTTCGGTTTGCGAGAAAGTATAA 59.010 37.500 0.00 0.00 0.00 0.98
229 1153 7.793927 AATCCTCACTTAACTAAGCATAAGC 57.206 36.000 0.00 0.00 42.56 3.09
254 1178 6.071784 TGCTCCTGTTACGTTACTTCTAATGA 60.072 38.462 6.24 0.00 0.00 2.57
259 1183 3.305881 GGTGCTCCTGTTACGTTACTTCT 60.306 47.826 6.24 0.00 0.00 2.85
260 1184 2.991866 GGTGCTCCTGTTACGTTACTTC 59.008 50.000 6.24 0.00 0.00 3.01
273 1197 3.515602 AGTTTTGAAGATGGTGCTCCT 57.484 42.857 6.34 0.00 34.23 3.69
298 1222 8.630037 ACATTTTATCCATAAACTTCGAATCCC 58.370 33.333 0.00 0.00 32.42 3.85
322 1246 8.626526 CCAATCATGATAATGAAGAATGTGACA 58.373 33.333 9.04 0.00 33.83 3.58
336 1260 4.535781 CCTGGTTGACCCAATCATGATAA 58.464 43.478 9.04 0.00 44.65 1.75
467 1403 6.724905 ACTAAGAAGGCTTGTCCTAGTAGAAA 59.275 38.462 3.46 0.00 46.94 2.52
479 1415 0.807496 GCCAGCACTAAGAAGGCTTG 59.193 55.000 3.46 0.00 42.01 4.01
516 1452 1.734465 CCTTTTGGCGTTGCACAAAAA 59.266 42.857 12.35 2.19 43.50 1.94
529 2095 2.806244 CACTACGACAAGACCCTTTTGG 59.194 50.000 0.00 0.00 41.37 3.28
577 2143 3.604875 TTGAACCGAACTAGGTGATCC 57.395 47.619 0.00 0.00 45.21 3.36
592 2158 9.677567 TTACAGCTGATTTATTTGACTTTGAAC 57.322 29.630 23.35 0.00 0.00 3.18
694 2262 3.679389 ACTTCTCATTTTGGCTCGATGT 58.321 40.909 0.00 0.00 0.00 3.06
743 2311 6.541111 AAACAGAAAAACGACAGAGGATAC 57.459 37.500 0.00 0.00 0.00 2.24
774 2343 5.940192 TTACTATCAGCCAAAAGTGTGTG 57.060 39.130 0.00 0.00 0.00 3.82
805 2374 3.095898 GAAATCTTCACGCCGGCCG 62.096 63.158 23.46 21.04 44.21 6.13
806 2375 2.761195 GGAAATCTTCACGCCGGCC 61.761 63.158 23.46 2.84 0.00 6.13
807 2376 0.461339 TAGGAAATCTTCACGCCGGC 60.461 55.000 19.07 19.07 0.00 6.13
808 2377 1.287425 GTAGGAAATCTTCACGCCGG 58.713 55.000 0.00 0.00 0.00 6.13
863 2434 8.802267 CAACAATAGAAAAAGGTAGGAAATCCA 58.198 33.333 1.67 0.00 38.89 3.41
866 2437 9.981114 CAACAACAATAGAAAAAGGTAGGAAAT 57.019 29.630 0.00 0.00 0.00 2.17
867 2438 9.191479 TCAACAACAATAGAAAAAGGTAGGAAA 57.809 29.630 0.00 0.00 0.00 3.13
868 2439 8.754991 TCAACAACAATAGAAAAAGGTAGGAA 57.245 30.769 0.00 0.00 0.00 3.36
869 2440 8.215050 TCTCAACAACAATAGAAAAAGGTAGGA 58.785 33.333 0.00 0.00 0.00 2.94
870 2441 8.391075 TCTCAACAACAATAGAAAAAGGTAGG 57.609 34.615 0.00 0.00 0.00 3.18
871 2442 8.017946 GCTCTCAACAACAATAGAAAAAGGTAG 58.982 37.037 0.00 0.00 0.00 3.18
872 2443 7.040686 GGCTCTCAACAACAATAGAAAAAGGTA 60.041 37.037 0.00 0.00 0.00 3.08
873 2444 6.239036 GGCTCTCAACAACAATAGAAAAAGGT 60.239 38.462 0.00 0.00 0.00 3.50
874 2445 6.152379 GGCTCTCAACAACAATAGAAAAAGG 58.848 40.000 0.00 0.00 0.00 3.11
875 2446 6.015940 AGGGCTCTCAACAACAATAGAAAAAG 60.016 38.462 0.00 0.00 0.00 2.27
897 2468 1.421646 ACAACAAAGGGAGTCTCAGGG 59.578 52.381 1.47 0.00 0.00 4.45
949 2522 1.554042 TTGCCGCTTTCTTCGTCGAC 61.554 55.000 5.18 5.18 0.00 4.20
980 2553 1.569479 GAAGCTTCCGTTTGAGCGCT 61.569 55.000 11.27 11.27 34.29 5.92
1024 2597 0.317479 GCCGAGTACAAGTGGAGTGT 59.683 55.000 0.00 0.00 0.00 3.55
1046 2622 1.911766 GACCAAGACCGGGAGTGGA 60.912 63.158 22.20 0.00 35.04 4.02
1049 2625 2.203596 ACGACCAAGACCGGGAGT 60.204 61.111 6.32 0.00 0.00 3.85
1112 2688 4.179599 GGGGGAGGAGGAGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
1216 2792 1.012486 GGAACGTACAAGGTGGCGAG 61.012 60.000 0.00 0.00 0.00 5.03
1241 2830 0.394216 TGCATGATGGTTTCGGGGAG 60.394 55.000 0.00 0.00 0.00 4.30
1287 2887 1.003355 CAGAACCATGGGAGTGCGT 60.003 57.895 18.09 0.00 0.00 5.24
1289 2889 1.021390 CGACAGAACCATGGGAGTGC 61.021 60.000 18.09 5.48 0.00 4.40
1290 2890 0.608130 TCGACAGAACCATGGGAGTG 59.392 55.000 18.09 12.04 0.00 3.51
1295 2896 1.354337 CGCACTCGACAGAACCATGG 61.354 60.000 11.19 11.19 38.10 3.66
1297 2898 1.738099 GCGCACTCGACAGAACCAT 60.738 57.895 0.30 0.00 38.10 3.55
1315 2916 3.865745 CGCAGGGAAATGTACAAGTAGAG 59.134 47.826 0.00 0.00 0.00 2.43
1317 2918 2.351726 GCGCAGGGAAATGTACAAGTAG 59.648 50.000 0.30 0.00 0.00 2.57
1375 2981 2.894765 TCGTTGTGGATAGAGTGTCCAA 59.105 45.455 0.00 0.00 46.67 3.53
1441 3047 6.037098 CGGTTTATCCACACAAGAAAACAAA 58.963 36.000 0.00 0.00 35.57 2.83
1642 3256 1.014352 ACCAAGACAAGCACGACAAC 58.986 50.000 0.00 0.00 0.00 3.32
1648 3262 0.040958 CAGCGAACCAAGACAAGCAC 60.041 55.000 0.00 0.00 0.00 4.40
1802 3418 4.496507 GGACACTTCTCTGAAACAACAAGC 60.497 45.833 0.00 0.00 0.00 4.01
1915 3531 0.532417 GTGCAGAGCCATCTAGCCTG 60.532 60.000 0.00 0.00 33.22 4.85
1933 3549 1.135527 TCCGAAACGATCATAAGGCGT 59.864 47.619 0.00 0.00 40.35 5.68
2012 3628 0.839946 AGACACAGCAGTCCAGGTTT 59.160 50.000 1.03 0.00 39.34 3.27
2024 3640 5.490139 AGTCAAACATTGTTCAGACACAG 57.510 39.130 24.73 4.45 34.98 3.66
2085 3701 1.448717 GAGCAAGGCCGAGTTCTCC 60.449 63.158 0.00 0.00 0.00 3.71
2160 3776 0.037975 TAACCGGCGTTCTTCCAGTC 60.038 55.000 6.01 0.00 33.17 3.51
2178 3794 3.468071 TCCCTCAGAGCCTTGTAACTA 57.532 47.619 0.00 0.00 0.00 2.24
2189 3805 3.431673 AAGGCTTTCTTTCCCTCAGAG 57.568 47.619 0.00 0.00 29.99 3.35
2247 3863 1.276138 TCCTGGCCATATGCTATCACG 59.724 52.381 5.51 0.00 40.92 4.35
2345 3961 0.036388 TGGCTTTAGCTGAGGGAACG 60.036 55.000 0.00 0.00 41.70 3.95
2443 4059 2.348218 CCGCACGAAGACAAAGTAACAC 60.348 50.000 0.00 0.00 0.00 3.32
2464 4080 0.251354 TGATTCCTCTCTGGCTGCAC 59.749 55.000 0.50 0.00 35.26 4.57
2502 4118 1.028905 CCTGCCTGTCAACGGAAAAA 58.971 50.000 0.00 0.00 0.00 1.94
2505 4121 2.429930 CCCTGCCTGTCAACGGAA 59.570 61.111 0.00 0.00 0.00 4.30
2507 4123 2.669569 CACCCTGCCTGTCAACGG 60.670 66.667 0.00 0.00 0.00 4.44
2511 4127 2.848679 TGAGCACCCTGCCTGTCA 60.849 61.111 0.00 0.00 46.52 3.58
2516 4132 2.045536 CTTCCTGAGCACCCTGCC 60.046 66.667 0.00 0.00 46.52 4.85
2543 4159 2.104792 TGTTCCAGTTTCTGAGGGAGTG 59.895 50.000 0.00 0.00 32.44 3.51
2544 4160 2.370189 CTGTTCCAGTTTCTGAGGGAGT 59.630 50.000 0.00 0.00 32.44 3.85
2547 4163 1.072965 AGCTGTTCCAGTTTCTGAGGG 59.927 52.381 0.00 0.00 32.44 4.30
2553 4169 0.961753 CCCCAAGCTGTTCCAGTTTC 59.038 55.000 0.00 0.00 32.86 2.78
2585 4201 3.052869 AGAAAAAGAAGGTCACCAAGGGT 60.053 43.478 0.00 0.00 35.62 4.34
2586 4202 3.566351 AGAAAAAGAAGGTCACCAAGGG 58.434 45.455 0.00 0.00 0.00 3.95
2602 4218 7.362920 CCCTGTCAAAAAGAAGAACAGAGAAAA 60.363 37.037 2.54 0.00 0.00 2.29
2611 4227 4.466015 ACAAAGCCCTGTCAAAAAGAAGAA 59.534 37.500 0.00 0.00 0.00 2.52
2612 4228 4.023291 ACAAAGCCCTGTCAAAAAGAAGA 58.977 39.130 0.00 0.00 0.00 2.87
2613 4229 4.391405 ACAAAGCCCTGTCAAAAAGAAG 57.609 40.909 0.00 0.00 0.00 2.85
2681 4299 4.774124 TCACATCTAGCTGATCCCAAAAG 58.226 43.478 0.00 0.00 32.05 2.27
2684 4302 4.033009 TCTTCACATCTAGCTGATCCCAA 58.967 43.478 0.00 0.00 32.05 4.12
2687 4305 7.839907 AGATTATCTTCACATCTAGCTGATCC 58.160 38.462 0.00 0.00 32.05 3.36
2726 4344 1.070758 CGTGGCAATACATCTAGGGCT 59.929 52.381 0.00 0.00 0.00 5.19
2750 4368 3.752339 GCTTGCCCTTTCCCTGCG 61.752 66.667 0.00 0.00 0.00 5.18
2799 4417 0.382158 TTGTTCGGTGATTTTGCGCA 59.618 45.000 5.66 5.66 0.00 6.09
2803 4421 5.748152 ACAAGAACATTGTTCGGTGATTTTG 59.252 36.000 28.19 22.78 0.00 2.44
2808 4426 3.064682 CACACAAGAACATTGTTCGGTGA 59.935 43.478 36.42 0.00 34.78 4.02
2815 4433 3.128589 GTCACCACACACAAGAACATTGT 59.871 43.478 0.00 0.00 0.00 2.71
2927 4548 8.606754 AGCCTATATGAGTAATCATCATCACT 57.393 34.615 9.29 0.90 38.36 3.41
2943 4564 9.778741 TCCAAAACTCTGTAATAAGCCTATATG 57.221 33.333 0.00 0.00 0.00 1.78
2946 4567 9.343539 GATTCCAAAACTCTGTAATAAGCCTAT 57.656 33.333 0.00 0.00 0.00 2.57
2947 4568 8.325787 TGATTCCAAAACTCTGTAATAAGCCTA 58.674 33.333 0.00 0.00 0.00 3.93
2949 4570 7.391148 TGATTCCAAAACTCTGTAATAAGCC 57.609 36.000 0.00 0.00 0.00 4.35
2971 4592 4.144297 GGGCATTGCTAACCTGAATATGA 58.856 43.478 8.82 0.00 0.00 2.15
3086 4707 5.014858 TCCTAGTTTGAAGTGACCGATAGT 58.985 41.667 0.00 0.00 0.00 2.12
3109 4730 8.871125 TCAAGATCTCTTACAGAAAAACTAGGT 58.129 33.333 0.00 0.00 33.62 3.08
3178 4799 6.645415 CGTAAAGAACATAGAACTTCACCACT 59.355 38.462 0.00 0.00 0.00 4.00
3187 4808 6.183360 GCCACTTCTCGTAAAGAACATAGAAC 60.183 42.308 6.56 0.00 39.12 3.01
3296 4917 6.310224 CGAACAAACATTGAATGGGTTAATCC 59.690 38.462 10.27 0.00 33.60 3.01
3306 4927 7.083858 CAGAATGGTACGAACAAACATTGAAT 58.916 34.615 0.00 0.00 32.42 2.57
3309 4930 5.757886 ACAGAATGGTACGAACAAACATTG 58.242 37.500 0.00 0.00 43.62 2.82
3382 5013 0.250124 TCCCAATTCGAACGTGCAGT 60.250 50.000 0.00 0.00 0.00 4.40
3396 5027 6.768641 TCATAAATGAGATCCAGATCCCAA 57.231 37.500 4.01 0.00 38.58 4.12
3408 5039 5.163311 TGCTCCTCGGAAATCATAAATGAGA 60.163 40.000 0.00 0.00 40.64 3.27
3410 5041 5.034852 TGCTCCTCGGAAATCATAAATGA 57.965 39.130 0.00 0.00 41.70 2.57
3430 5061 5.065090 AGCTCAAGAAACAACCAAAATTTGC 59.935 36.000 0.00 0.00 0.00 3.68
3486 5117 2.224843 TGAATCAGTGTGCCATTCTGGT 60.225 45.455 4.48 0.00 40.46 4.00
3505 5136 2.507058 CCTCTCCATTCCACAAGGATGA 59.493 50.000 0.00 0.00 45.26 2.92
3524 5155 0.615331 ACGGATGCATGAAGTGACCT 59.385 50.000 2.46 0.00 0.00 3.85
3542 5173 1.398960 GCATGAACTCAGTGCGTCAAC 60.399 52.381 0.00 0.00 0.00 3.18
3547 5178 1.596260 CCATAGCATGAACTCAGTGCG 59.404 52.381 0.00 0.00 43.37 5.34
3581 5212 1.613437 CACCCATGCTCGGAACTTTTT 59.387 47.619 0.00 0.00 0.00 1.94
3622 5253 5.300792 CACCAACCAGTTACTTGTACCAATT 59.699 40.000 0.00 0.00 0.00 2.32
3625 5256 3.455177 TCACCAACCAGTTACTTGTACCA 59.545 43.478 0.00 0.00 0.00 3.25
3664 5295 6.207810 AGAGTTCATCGAGTATACCTTCCATC 59.792 42.308 0.00 0.00 0.00 3.51
3683 5314 9.827411 GGAATAACTTTGTTATGTGAAGAGTTC 57.173 33.333 4.05 0.00 0.00 3.01
3697 5331 5.385198 ACTGATGGTGTGGAATAACTTTGT 58.615 37.500 0.00 0.00 0.00 2.83
3698 5332 5.964958 ACTGATGGTGTGGAATAACTTTG 57.035 39.130 0.00 0.00 0.00 2.77
3699 5333 7.888021 TGATAACTGATGGTGTGGAATAACTTT 59.112 33.333 0.00 0.00 0.00 2.66
3712 5346 7.502226 TCTTTGAACAAACTGATAACTGATGGT 59.498 33.333 0.00 0.00 0.00 3.55
3740 5374 8.372521 CGGTACAATTGAAAAATTATGTCAAGC 58.627 33.333 13.59 0.00 34.91 4.01
3741 5375 9.619316 TCGGTACAATTGAAAAATTATGTCAAG 57.381 29.630 13.59 0.00 34.91 3.02
3749 5383 4.526650 AGGGCTCGGTACAATTGAAAAATT 59.473 37.500 13.59 0.00 0.00 1.82
3764 5398 0.464452 AGATTACGGAAAGGGCTCGG 59.536 55.000 0.00 0.00 0.00 4.63
3805 5439 5.182001 ACAAGTCAATGAGATAACACAAGGC 59.818 40.000 0.00 0.00 0.00 4.35
3806 5440 6.205464 ACACAAGTCAATGAGATAACACAAGG 59.795 38.462 0.00 0.00 0.00 3.61
3814 5448 5.385509 TCGACACACAAGTCAATGAGATA 57.614 39.130 0.00 0.00 38.43 1.98
3825 5459 6.957635 CAGAATCAATAACATCGACACACAAG 59.042 38.462 0.00 0.00 0.00 3.16
3842 5476 1.344438 ACCTGAGCGTGACAGAATCAA 59.656 47.619 0.00 0.00 39.72 2.57
3845 5479 0.036952 CCACCTGAGCGTGACAGAAT 60.037 55.000 0.00 0.00 37.54 2.40
3855 5489 1.755179 ATATTGCACACCACCTGAGC 58.245 50.000 0.00 0.00 37.02 4.26
3886 5520 4.999950 ACCTTTGTATTCAGCAGAAGAGTG 59.000 41.667 0.00 0.00 37.14 3.51
3943 5578 5.569413 CAAAAGATTCTATACAACCGCACC 58.431 41.667 0.00 0.00 0.00 5.01
3980 5615 1.771854 TCAGGCAGTTGGGTAGTTCAA 59.228 47.619 0.00 0.00 0.00 2.69
4057 5692 1.473434 CCCAGCCGAGTATCCTTCAAC 60.473 57.143 0.00 0.00 0.00 3.18
4071 5706 3.181440 TGAAGGTATGATCATTCCCAGCC 60.181 47.826 23.54 12.90 0.00 4.85
4130 5765 1.208844 TCCCGACTCTGAGAGGGTCT 61.209 60.000 28.37 3.46 44.13 3.85
4173 5808 3.126831 GCCGAGAGATCCATTTACACAG 58.873 50.000 0.00 0.00 0.00 3.66
4349 5984 5.465056 TCAAGTGCATCGCGAAATGATTATA 59.535 36.000 15.24 0.00 0.00 0.98
4351 5986 3.620821 TCAAGTGCATCGCGAAATGATTA 59.379 39.130 15.24 0.00 0.00 1.75
4395 6030 0.259938 ATGGGCAAGATTCTGTCCCC 59.740 55.000 16.60 12.79 40.63 4.81
4416 6051 4.756084 ACAGATTAACAGCTTCAACTGC 57.244 40.909 0.00 0.00 41.60 4.40
4441 6076 6.683974 AGGAAACATTGGATTTATCTGTCG 57.316 37.500 0.00 0.00 0.00 4.35
4451 6086 5.045432 TCGGTAACCTAAGGAAACATTGGAT 60.045 40.000 0.00 0.00 0.00 3.41
4494 6132 1.251527 TGAGAGAGACAAGGGGCGTC 61.252 60.000 0.00 0.00 0.00 5.19
4498 6136 1.974236 AGTGTTGAGAGAGACAAGGGG 59.026 52.381 0.00 0.00 0.00 4.79
4636 6288 4.038883 TGTCATGAATGTTGCATTTGTCCA 59.961 37.500 0.00 0.00 0.00 4.02
4834 6648 2.206750 CAAAAACCTGGAGTTCGACGA 58.793 47.619 0.00 0.00 37.88 4.20
4837 6651 3.284793 TTCCAAAAACCTGGAGTTCGA 57.715 42.857 0.00 0.00 46.20 3.71
4846 6660 2.698274 ACCAGCGAAATTCCAAAAACCT 59.302 40.909 0.00 0.00 0.00 3.50
4853 6667 1.234821 GTCACACCAGCGAAATTCCA 58.765 50.000 0.00 0.00 0.00 3.53
4867 6681 2.434185 GCAGGAATCGCGGTCACA 60.434 61.111 6.13 0.00 0.00 3.58
4876 6690 2.872858 GGAGTTATCCAACGCAGGAATC 59.127 50.000 0.09 0.00 45.87 2.52
4913 6728 2.511373 GCGGACGACCATGATGCA 60.511 61.111 4.48 0.00 35.59 3.96
4956 6771 1.465354 GCGCAAAAGATCACTGCTGAG 60.465 52.381 0.30 0.00 33.82 3.35
4958 6773 0.455633 GGCGCAAAAGATCACTGCTG 60.456 55.000 10.83 6.63 33.82 4.41
4967 6782 1.437772 TTTCGAACGGGCGCAAAAGA 61.438 50.000 10.83 0.00 0.00 2.52
4974 6789 0.739813 AGATTCCTTTCGAACGGGCG 60.740 55.000 19.55 0.00 31.79 6.13
5001 6816 3.500642 GCGGCCGAAAGAAGCTCC 61.501 66.667 33.48 2.06 0.00 4.70
5019 6834 1.735571 GCCGTCGGCTCTGAAATTTAA 59.264 47.619 28.98 0.00 46.69 1.52
5034 6849 3.358076 CTGAGGAGAACCCGCCGTC 62.358 68.421 0.00 0.00 40.87 4.79
5059 6874 7.816640 CAAACTTCTATTTGGTTTAGCTGCTA 58.183 34.615 5.02 5.02 36.17 3.49
5072 6887 5.335976 GCAACAGCTAGCCAAACTTCTATTT 60.336 40.000 12.13 0.00 0.00 1.40
5100 6915 4.706842 TCCTTTTGAGGAGTTAAGCACT 57.293 40.909 0.00 0.00 39.07 4.40
5121 6936 7.393515 ACAAGGGCTTAATTCGTTAAAAGATCT 59.606 33.333 0.00 0.00 0.00 2.75
5143 6958 3.366396 TCTCTAGCTGAACCCCTACAAG 58.634 50.000 0.00 0.00 0.00 3.16
5156 6971 6.102027 TGGAAGACCTTAGAGTATCTCTAGCT 59.898 42.308 6.60 0.00 42.92 3.32
5166 6981 7.013464 CGATAACATAGTGGAAGACCTTAGAGT 59.987 40.741 0.00 0.00 37.04 3.24
5175 6990 4.081365 TGGCAACGATAACATAGTGGAAGA 60.081 41.667 0.00 0.00 42.51 2.87
5179 6994 6.602179 CAATATGGCAACGATAACATAGTGG 58.398 40.000 0.00 0.00 37.89 4.00
5193 7008 5.046950 GGTACCTTTTTGACCAATATGGCAA 60.047 40.000 4.06 0.00 42.67 4.52
5197 7012 6.582677 TGTGGTACCTTTTTGACCAATATG 57.417 37.500 14.36 0.00 44.66 1.78
5212 7027 2.483876 CATCGGTGATGATGTGGTACC 58.516 52.381 4.43 4.43 42.09 3.34
5215 7030 0.464373 GCCATCGGTGATGATGTGGT 60.464 55.000 8.32 0.00 43.39 4.16
5229 7044 1.523758 ACCGTGTTTCTTCAGCCATC 58.476 50.000 0.00 0.00 0.00 3.51
5233 7048 3.765026 TCAAAAACCGTGTTTCTTCAGC 58.235 40.909 3.06 0.00 0.00 4.26
5235 7050 4.938832 TCTCTCAAAAACCGTGTTTCTTCA 59.061 37.500 3.06 0.00 0.00 3.02
5236 7051 5.479716 TCTCTCAAAAACCGTGTTTCTTC 57.520 39.130 3.06 0.00 0.00 2.87
5262 7077 3.030291 TGCCAGATCCGCCATAATTTTT 58.970 40.909 0.23 0.00 0.00 1.94
5263 7078 2.624838 CTGCCAGATCCGCCATAATTTT 59.375 45.455 0.00 0.00 0.00 1.82
5264 7079 2.233271 CTGCCAGATCCGCCATAATTT 58.767 47.619 0.00 0.00 0.00 1.82
5265 7080 1.901591 CTGCCAGATCCGCCATAATT 58.098 50.000 0.00 0.00 0.00 1.40
5266 7081 0.607489 GCTGCCAGATCCGCCATAAT 60.607 55.000 0.00 0.00 0.00 1.28
5267 7082 1.227943 GCTGCCAGATCCGCCATAA 60.228 57.895 0.00 0.00 0.00 1.90
5268 7083 2.142761 AGCTGCCAGATCCGCCATA 61.143 57.895 0.00 0.00 0.00 2.74
5269 7084 3.486685 AGCTGCCAGATCCGCCAT 61.487 61.111 0.00 0.00 0.00 4.40
5270 7085 4.478371 CAGCTGCCAGATCCGCCA 62.478 66.667 0.00 0.00 0.00 5.69
5271 7086 2.388890 ATACAGCTGCCAGATCCGCC 62.389 60.000 15.27 0.00 0.00 6.13
5272 7087 0.533755 AATACAGCTGCCAGATCCGC 60.534 55.000 15.27 0.00 0.00 5.54
5273 7088 1.224075 CAATACAGCTGCCAGATCCG 58.776 55.000 15.27 0.00 0.00 4.18
5274 7089 2.216898 GACAATACAGCTGCCAGATCC 58.783 52.381 15.27 0.00 0.00 3.36
5275 7090 2.611292 GTGACAATACAGCTGCCAGATC 59.389 50.000 15.27 7.27 0.00 2.75
5276 7091 2.636830 GTGACAATACAGCTGCCAGAT 58.363 47.619 15.27 0.00 0.00 2.90
5277 7092 1.672737 CGTGACAATACAGCTGCCAGA 60.673 52.381 15.27 0.00 0.00 3.86
5278 7093 0.723414 CGTGACAATACAGCTGCCAG 59.277 55.000 15.27 3.95 0.00 4.85
5279 7094 0.673333 CCGTGACAATACAGCTGCCA 60.673 55.000 15.27 1.58 0.00 4.92
5280 7095 0.673644 ACCGTGACAATACAGCTGCC 60.674 55.000 15.27 0.00 0.00 4.85
5281 7096 1.156736 AACCGTGACAATACAGCTGC 58.843 50.000 15.27 0.00 0.00 5.25
5282 7097 2.671396 GGTAACCGTGACAATACAGCTG 59.329 50.000 13.48 13.48 0.00 4.24
5283 7098 2.565834 AGGTAACCGTGACAATACAGCT 59.434 45.455 0.00 0.00 37.17 4.24
5284 7099 2.928116 GAGGTAACCGTGACAATACAGC 59.072 50.000 0.00 0.00 37.17 4.40
5285 7100 4.182693 TGAGGTAACCGTGACAATACAG 57.817 45.455 0.00 0.00 37.17 2.74
5286 7101 4.039488 ACTTGAGGTAACCGTGACAATACA 59.961 41.667 0.00 0.00 37.17 2.29
5287 7102 4.563061 ACTTGAGGTAACCGTGACAATAC 58.437 43.478 0.00 0.00 37.17 1.89
5288 7103 4.877378 ACTTGAGGTAACCGTGACAATA 57.123 40.909 0.00 0.00 37.17 1.90
5289 7104 3.764237 ACTTGAGGTAACCGTGACAAT 57.236 42.857 0.00 0.00 37.17 2.71
5290 7105 3.199677 CAACTTGAGGTAACCGTGACAA 58.800 45.455 0.00 0.00 37.17 3.18
5291 7106 2.484065 CCAACTTGAGGTAACCGTGACA 60.484 50.000 0.00 0.00 37.17 3.58
5292 7107 2.140717 CCAACTTGAGGTAACCGTGAC 58.859 52.381 0.00 0.00 37.17 3.67
5293 7108 1.541670 GCCAACTTGAGGTAACCGTGA 60.542 52.381 0.00 0.00 37.17 4.35
5294 7109 0.872388 GCCAACTTGAGGTAACCGTG 59.128 55.000 0.00 0.00 37.17 4.94
5295 7110 0.601841 CGCCAACTTGAGGTAACCGT 60.602 55.000 0.00 0.00 37.17 4.83
5296 7111 0.320073 TCGCCAACTTGAGGTAACCG 60.320 55.000 0.00 0.00 37.17 4.44
5297 7112 1.439679 CTCGCCAACTTGAGGTAACC 58.560 55.000 0.00 0.00 37.17 2.85
5298 7113 1.439679 CCTCGCCAACTTGAGGTAAC 58.560 55.000 0.07 0.00 45.48 2.50
5299 7114 3.927555 CCTCGCCAACTTGAGGTAA 57.072 52.632 0.07 0.00 45.48 2.85
5303 7118 1.079503 GCTTACCTCGCCAACTTGAG 58.920 55.000 0.00 0.00 0.00 3.02
5304 7119 0.321298 GGCTTACCTCGCCAACTTGA 60.321 55.000 0.00 0.00 46.77 3.02
5305 7120 2.171635 GGCTTACCTCGCCAACTTG 58.828 57.895 0.00 0.00 46.77 3.16
5306 7121 4.716003 GGCTTACCTCGCCAACTT 57.284 55.556 0.00 0.00 46.77 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.