Multiple sequence alignment - TraesCS1B01G107300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G107300 chr1B 100.000 3829 0 0 1 3829 119250874 119247046 0.000000e+00 7071.0
1 TraesCS1B01G107300 chr1B 92.674 1406 57 20 774 2173 119494669 119493304 0.000000e+00 1984.0
2 TraesCS1B01G107300 chr1B 87.767 1594 100 37 628 2173 119578663 119580209 0.000000e+00 1775.0
3 TraesCS1B01G107300 chr1B 94.093 728 41 2 1447 2173 119219553 119218827 0.000000e+00 1105.0
4 TraesCS1B01G107300 chr1B 100.000 380 0 0 2174 2553 270793940 270794319 0.000000e+00 702.0
5 TraesCS1B01G107300 chr1B 99.221 385 3 0 2169 2553 679865378 679865762 0.000000e+00 695.0
6 TraesCS1B01G107300 chr1B 91.023 479 25 6 2553 3017 119493311 119492837 6.980000e-177 630.0
7 TraesCS1B01G107300 chr1B 87.528 449 36 7 2554 2986 119218833 119218389 5.710000e-138 501.0
8 TraesCS1B01G107300 chr1B 95.000 280 14 0 2554 2833 119580203 119580482 1.260000e-119 440.0
9 TraesCS1B01G107300 chr1B 81.111 270 25 14 138 396 119578284 119578538 3.900000e-45 193.0
10 TraesCS1B01G107300 chr1B 97.872 47 1 0 3783 3829 581264012 581264058 8.820000e-12 82.4
11 TraesCS1B01G107300 chr1B 97.727 44 1 0 2974 3017 119137989 119137946 4.100000e-10 76.8
12 TraesCS1B01G107300 chr1A 94.815 1620 52 12 581 2173 76539490 76537876 0.000000e+00 2497.0
13 TraesCS1B01G107300 chr1A 92.806 1404 75 13 775 2173 76728591 76729973 0.000000e+00 2010.0
14 TraesCS1B01G107300 chr1A 91.824 636 26 7 2553 3177 76537883 76537263 0.000000e+00 863.0
15 TraesCS1B01G107300 chr1A 89.067 375 26 6 80 451 76540451 76540089 5.830000e-123 451.0
16 TraesCS1B01G107300 chr1A 93.929 280 17 0 2554 2833 76729967 76730246 1.270000e-114 424.0
17 TraesCS1B01G107300 chr1A 78.541 466 47 29 103 539 76726013 76726454 1.360000e-64 257.0
18 TraesCS1B01G107300 chr1A 92.806 139 8 1 447 583 76539931 76539793 2.330000e-47 200.0
19 TraesCS1B01G107300 chr1A 97.778 45 0 1 5 48 430181787 430181743 4.100000e-10 76.8
20 TraesCS1B01G107300 chr1A 95.556 45 1 1 5 48 16024056 16024100 1.910000e-08 71.3
21 TraesCS1B01G107300 chr1A 95.556 45 1 1 5 48 456938559 456938603 1.910000e-08 71.3
22 TraesCS1B01G107300 chr1D 92.011 1790 71 15 440 2173 75842012 75840239 0.000000e+00 2447.0
23 TraesCS1B01G107300 chr1D 94.017 1404 76 8 775 2173 75915021 75916421 0.000000e+00 2121.0
24 TraesCS1B01G107300 chr1D 93.950 1405 69 8 775 2173 75767878 75766484 0.000000e+00 2109.0
25 TraesCS1B01G107300 chr1D 93.777 466 20 3 2554 3016 75766490 75766031 0.000000e+00 691.0
26 TraesCS1B01G107300 chr1D 92.519 401 24 2 2619 3019 75840198 75839804 1.540000e-158 569.0
27 TraesCS1B01G107300 chr1D 94.662 281 15 0 2553 2833 75916414 75916694 1.630000e-118 436.0
28 TraesCS1B01G107300 chr1D 92.336 274 11 4 80 350 75891558 75891292 7.760000e-102 381.0
29 TraesCS1B01G107300 chr1D 78.834 463 40 31 103 539 75914419 75914849 3.790000e-65 259.0
30 TraesCS1B01G107300 chr1D 91.954 87 7 0 344 430 75885102 75885016 5.190000e-24 122.0
31 TraesCS1B01G107300 chr1D 94.737 38 2 0 9 46 457957843 457957806 4.130000e-05 60.2
32 TraesCS1B01G107300 chr7B 98.980 392 4 0 2167 2558 4588190 4587799 0.000000e+00 702.0
33 TraesCS1B01G107300 chr7B 97.980 396 7 1 2158 2552 28061141 28061536 0.000000e+00 686.0
34 TraesCS1B01G107300 chr7B 97.872 47 1 0 3783 3829 652467772 652467818 8.820000e-12 82.4
35 TraesCS1B01G107300 chr7B 93.182 44 3 0 3411 3454 615243318 615243361 8.880000e-07 65.8
36 TraesCS1B01G107300 chr3B 99.738 382 1 0 2174 2555 231992362 231991981 0.000000e+00 701.0
37 TraesCS1B01G107300 chr3B 93.182 44 3 0 3411 3454 748605785 748605828 8.880000e-07 65.8
38 TraesCS1B01G107300 chr6A 99.737 380 1 0 2174 2553 13877044 13876665 0.000000e+00 697.0
39 TraesCS1B01G107300 chr4A 98.485 396 3 3 2168 2562 718849808 718849415 0.000000e+00 695.0
40 TraesCS1B01G107300 chr2B 98.005 401 6 2 2174 2573 49846173 49845774 0.000000e+00 695.0
41 TraesCS1B01G107300 chr5A 97.990 398 5 3 2167 2562 15037048 15037444 0.000000e+00 688.0
42 TraesCS1B01G107300 chr7D 82.963 675 111 4 1495 2167 9864173 9863501 1.180000e-169 606.0
43 TraesCS1B01G107300 chr7D 97.778 45 0 1 5 48 31996789 31996745 4.100000e-10 76.8
44 TraesCS1B01G107300 chr7D 95.556 45 1 1 5 48 617771409 617771365 1.910000e-08 71.3
45 TraesCS1B01G107300 chr5D 83.797 611 96 1 3176 3786 73470169 73469562 9.220000e-161 577.0
46 TraesCS1B01G107300 chr5D 97.778 45 0 1 5 48 176092272 176092316 4.100000e-10 76.8
47 TraesCS1B01G107300 chr5D 95.556 45 1 1 5 48 299397979 299398023 1.910000e-08 71.3
48 TraesCS1B01G107300 chr4B 77.703 592 119 11 3192 3780 179157222 179157803 2.190000e-92 350.0
49 TraesCS1B01G107300 chr4B 91.071 56 5 0 3773 3828 651230587 651230642 4.100000e-10 76.8
50 TraesCS1B01G107300 chr4B 89.831 59 4 2 3772 3829 89237647 89237704 1.480000e-09 75.0
51 TraesCS1B01G107300 chr4B 91.071 56 4 1 3774 3829 560920160 560920214 1.480000e-09 75.0
52 TraesCS1B01G107300 chrUn 97.872 47 1 0 3783 3829 262077546 262077592 8.820000e-12 82.4
53 TraesCS1B01G107300 chr6B 97.826 46 1 0 3784 3829 259397257 259397302 3.170000e-11 80.5
54 TraesCS1B01G107300 chr6B 97.826 46 1 0 3784 3829 669477444 669477489 3.170000e-11 80.5
55 TraesCS1B01G107300 chr6B 88.679 53 6 0 3402 3454 18153369 18153421 8.880000e-07 65.8
56 TraesCS1B01G107300 chr6B 88.679 53 6 0 3402 3454 88743571 88743623 8.880000e-07 65.8
57 TraesCS1B01G107300 chr5B 95.918 49 2 0 3781 3829 225993445 225993493 3.170000e-11 80.5
58 TraesCS1B01G107300 chr4D 97.778 45 0 1 5 48 122727222 122727266 4.100000e-10 76.8
59 TraesCS1B01G107300 chr2A 97.778 45 0 1 5 48 719304551 719304507 4.100000e-10 76.8
60 TraesCS1B01G107300 chr2D 95.556 45 1 1 5 48 633609053 633609097 1.910000e-08 71.3
61 TraesCS1B01G107300 chr6D 93.333 45 2 1 5 48 106946810 106946766 8.880000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G107300 chr1B 119247046 119250874 3828 True 7071.000000 7071 100.000000 1 3829 1 chr1B.!!$R2 3828
1 TraesCS1B01G107300 chr1B 119492837 119494669 1832 True 1307.000000 1984 91.848500 774 3017 2 chr1B.!!$R4 2243
2 TraesCS1B01G107300 chr1B 119218389 119219553 1164 True 803.000000 1105 90.810500 1447 2986 2 chr1B.!!$R3 1539
3 TraesCS1B01G107300 chr1B 119578284 119580482 2198 False 802.666667 1775 87.959333 138 2833 3 chr1B.!!$F4 2695
4 TraesCS1B01G107300 chr1A 76537263 76540451 3188 True 1002.750000 2497 92.128000 80 3177 4 chr1A.!!$R2 3097
5 TraesCS1B01G107300 chr1A 76726013 76730246 4233 False 897.000000 2010 88.425333 103 2833 3 chr1A.!!$F3 2730
6 TraesCS1B01G107300 chr1D 75839804 75842012 2208 True 1508.000000 2447 92.265000 440 3019 2 chr1D.!!$R5 2579
7 TraesCS1B01G107300 chr1D 75766031 75767878 1847 True 1400.000000 2109 93.863500 775 3016 2 chr1D.!!$R4 2241
8 TraesCS1B01G107300 chr1D 75914419 75916694 2275 False 938.666667 2121 89.171000 103 2833 3 chr1D.!!$F1 2730
9 TraesCS1B01G107300 chr7D 9863501 9864173 672 True 606.000000 606 82.963000 1495 2167 1 chr7D.!!$R1 672
10 TraesCS1B01G107300 chr5D 73469562 73470169 607 True 577.000000 577 83.797000 3176 3786 1 chr5D.!!$R1 610
11 TraesCS1B01G107300 chr4B 179157222 179157803 581 False 350.000000 350 77.703000 3192 3780 1 chr4B.!!$F2 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 3233 0.170339 GCGCCGTTAGCCAGAAAATT 59.830 50.0 0.0 0.0 38.78 1.82 F
1757 4352 0.326264 AATTCAAGGGCGAGCTCAGT 59.674 50.0 15.4 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2473 5068 0.106149 GCCCCTCGGTAAATCGTCAT 59.894 55.0 0.0 0.0 0.00 3.06 R
3544 6180 0.331616 AACCTACCTGGATGCCAACC 59.668 55.0 0.0 0.0 39.71 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 9.436957 AACATCTAAATGTGAATTAGACGAACT 57.563 29.630 0.00 0.00 45.48 3.01
133 134 1.137872 AGAGATCAGCGTTGGTCCATC 59.862 52.381 9.09 1.30 34.86 3.51
134 135 1.137872 GAGATCAGCGTTGGTCCATCT 59.862 52.381 9.09 4.95 34.86 2.90
135 136 2.362397 GAGATCAGCGTTGGTCCATCTA 59.638 50.000 9.09 0.00 34.86 1.98
136 137 2.363680 AGATCAGCGTTGGTCCATCTAG 59.636 50.000 9.09 0.00 34.86 2.43
229 243 7.562135 AGATATTACACCGTTGACTAACCAAT 58.438 34.615 0.00 0.00 33.12 3.16
230 244 7.709613 AGATATTACACCGTTGACTAACCAATC 59.290 37.037 0.00 0.00 33.12 2.67
231 245 3.478857 ACACCGTTGACTAACCAATCA 57.521 42.857 0.00 0.00 33.12 2.57
232 246 3.811083 ACACCGTTGACTAACCAATCAA 58.189 40.909 0.00 0.00 33.12 2.57
276 290 7.145323 GCTTAATCTTGTGCTTTTTGTCCTTA 58.855 34.615 0.00 0.00 0.00 2.69
278 292 6.715347 AATCTTGTGCTTTTTGTCCTTACT 57.285 33.333 0.00 0.00 0.00 2.24
329 347 6.647212 TCACTGATATTTAAGAGTGCAACG 57.353 37.500 0.00 0.00 45.86 4.10
330 348 6.394809 TCACTGATATTTAAGAGTGCAACGA 58.605 36.000 0.00 0.00 45.86 3.85
333 351 8.177663 CACTGATATTTAAGAGTGCAACGAAAT 58.822 33.333 0.00 1.23 45.86 2.17
386 405 7.231722 AGGTAGCTCCGCTAATTCCATATATAG 59.768 40.741 0.00 0.00 43.07 1.31
400 419 4.473559 CCATATATAGTCCCCGAAACCCAT 59.526 45.833 0.00 0.00 0.00 4.00
404 423 1.153025 GTCCCCGAAACCCATAGGC 60.153 63.158 0.00 0.00 36.11 3.93
410 429 1.077716 GAAACCCATAGGCGCCACT 60.078 57.895 31.54 12.06 36.11 4.00
427 449 4.489679 CCACTAAGTTTGGCTGAAGTTC 57.510 45.455 0.00 0.00 0.00 3.01
502 701 0.249741 ACGCGCAACTTCAAGGTAGT 60.250 50.000 5.73 0.00 0.00 2.73
539 738 3.418684 AATGAAACCTGCCGTAGACTT 57.581 42.857 0.00 0.00 0.00 3.01
679 1183 3.221964 ACAGGGAATGTTCGTACGTAC 57.778 47.619 17.00 17.00 39.96 3.67
680 1184 2.414559 ACAGGGAATGTTCGTACGTACG 60.415 50.000 35.90 35.90 39.96 3.67
725 3209 0.793104 GCCACGCGCTTACAAATCAC 60.793 55.000 5.73 0.00 0.00 3.06
749 3233 0.170339 GCGCCGTTAGCCAGAAAATT 59.830 50.000 0.00 0.00 38.78 1.82
753 3237 2.732282 GCCGTTAGCCAGAAAATTGAGC 60.732 50.000 0.00 0.00 34.35 4.26
761 3245 2.232941 CCAGAAAATTGAGCAGCCACAT 59.767 45.455 0.00 0.00 0.00 3.21
857 3359 4.750021 AACTTACCTTCGAGGGTATTCC 57.250 45.455 25.26 0.00 40.58 3.01
859 3361 2.734755 TACCTTCGAGGGTATTCCGA 57.265 50.000 21.55 1.16 40.58 4.55
909 3413 3.796717 CCGCCTATATATACATGCACACG 59.203 47.826 0.00 0.00 0.00 4.49
958 3467 1.135546 CAACACAACGAGCCACACAAA 60.136 47.619 0.00 0.00 0.00 2.83
973 3495 3.360463 CACACAAAACAAACACACACGAG 59.640 43.478 0.00 0.00 0.00 4.18
988 3510 3.062639 CACACGAGCATTAGTTAGCTTGG 59.937 47.826 0.00 0.00 44.72 3.61
1029 3559 1.657751 CGGTGGAGATCACGCAGAGA 61.658 60.000 0.00 0.00 46.96 3.10
1463 4054 7.707035 CAGATATCAGTACTGTAGGGTTGAAAC 59.293 40.741 21.99 3.84 0.00 2.78
1510 4105 1.014044 TCTCAGGAACGTGCGAATGC 61.014 55.000 0.00 0.00 43.20 3.56
1757 4352 0.326264 AATTCAAGGGCGAGCTCAGT 59.674 50.000 15.40 0.00 0.00 3.41
1769 4364 4.586618 CTCAGTTGGAGCCACTCG 57.413 61.111 0.00 0.00 36.69 4.18
1782 4377 1.475403 CCACTCGTATGGTGTCCTCT 58.525 55.000 0.15 0.00 34.77 3.69
2171 4766 3.487202 GAGCGCGGCGTGATTGAA 61.487 61.111 26.40 0.00 0.00 2.69
2172 4767 3.425938 GAGCGCGGCGTGATTGAAG 62.426 63.158 26.40 0.00 0.00 3.02
2174 4769 3.787676 CGCGGCGTGATTGAAGCA 61.788 61.111 16.70 0.00 0.00 3.91
2175 4770 2.560861 GCGGCGTGATTGAAGCAA 59.439 55.556 9.37 0.00 0.00 3.91
2176 4771 1.512734 GCGGCGTGATTGAAGCAAG 60.513 57.895 9.37 0.00 0.00 4.01
2177 4772 1.135315 CGGCGTGATTGAAGCAAGG 59.865 57.895 0.00 0.00 0.00 3.61
2178 4773 1.577328 CGGCGTGATTGAAGCAAGGT 61.577 55.000 0.00 0.00 0.00 3.50
2179 4774 0.598065 GGCGTGATTGAAGCAAGGTT 59.402 50.000 0.00 0.00 0.00 3.50
2180 4775 1.000274 GGCGTGATTGAAGCAAGGTTT 60.000 47.619 0.00 0.00 0.00 3.27
2181 4776 2.545742 GGCGTGATTGAAGCAAGGTTTT 60.546 45.455 0.00 0.00 0.00 2.43
2182 4777 2.472488 GCGTGATTGAAGCAAGGTTTTG 59.528 45.455 0.00 0.00 37.36 2.44
2183 4778 3.052036 CGTGATTGAAGCAAGGTTTTGG 58.948 45.455 0.00 0.00 34.79 3.28
2184 4779 3.490761 CGTGATTGAAGCAAGGTTTTGGT 60.491 43.478 0.00 0.00 46.37 3.67
2190 4785 2.351706 AGCAAGGTTTTGGTTACCGA 57.648 45.000 0.00 0.00 42.03 4.69
2191 4786 2.657143 AGCAAGGTTTTGGTTACCGAA 58.343 42.857 0.00 0.00 42.03 4.30
2192 4787 3.227614 AGCAAGGTTTTGGTTACCGAAT 58.772 40.909 4.72 0.00 42.03 3.34
2193 4788 3.005367 AGCAAGGTTTTGGTTACCGAATG 59.995 43.478 4.72 1.86 42.03 2.67
2194 4789 3.004944 GCAAGGTTTTGGTTACCGAATGA 59.995 43.478 4.72 0.00 40.69 2.57
2195 4790 4.794169 CAAGGTTTTGGTTACCGAATGAG 58.206 43.478 4.72 0.00 40.69 2.90
2196 4791 3.418047 AGGTTTTGGTTACCGAATGAGG 58.582 45.455 4.72 0.00 40.69 3.86
2198 4793 4.041938 AGGTTTTGGTTACCGAATGAGGTA 59.958 41.667 4.72 0.00 43.89 3.08
2210 4805 5.989777 ACCGAATGAGGTAATTTTATCGAGG 59.010 40.000 0.00 0.00 43.89 4.63
2211 4806 5.408604 CCGAATGAGGTAATTTTATCGAGGG 59.591 44.000 0.00 0.00 0.00 4.30
2212 4807 5.408604 CGAATGAGGTAATTTTATCGAGGGG 59.591 44.000 0.00 0.00 0.00 4.79
2213 4808 4.699925 TGAGGTAATTTTATCGAGGGGG 57.300 45.455 0.00 0.00 0.00 5.40
2214 4809 4.300345 TGAGGTAATTTTATCGAGGGGGA 58.700 43.478 0.00 0.00 0.00 4.81
2215 4810 4.102054 TGAGGTAATTTTATCGAGGGGGAC 59.898 45.833 0.00 0.00 0.00 4.46
2216 4811 4.304659 AGGTAATTTTATCGAGGGGGACT 58.695 43.478 0.00 0.00 0.00 3.85
2217 4812 4.102681 AGGTAATTTTATCGAGGGGGACTG 59.897 45.833 0.00 0.00 0.00 3.51
2218 4813 4.102054 GGTAATTTTATCGAGGGGGACTGA 59.898 45.833 0.00 0.00 0.00 3.41
2219 4814 5.221864 GGTAATTTTATCGAGGGGGACTGAT 60.222 44.000 0.00 0.00 0.00 2.90
2220 4815 6.013984 GGTAATTTTATCGAGGGGGACTGATA 60.014 42.308 0.00 0.00 0.00 2.15
2221 4816 6.509523 AATTTTATCGAGGGGGACTGATAA 57.490 37.500 0.00 0.00 32.43 1.75
2222 4817 5.961398 TTTTATCGAGGGGGACTGATAAA 57.039 39.130 0.00 2.97 37.38 1.40
2223 4818 6.509523 TTTTATCGAGGGGGACTGATAAAT 57.490 37.500 6.98 0.00 38.06 1.40
2224 4819 5.483685 TTATCGAGGGGGACTGATAAATG 57.516 43.478 0.00 0.00 31.90 2.32
2225 4820 2.759355 TCGAGGGGGACTGATAAATGT 58.241 47.619 0.00 0.00 0.00 2.71
2226 4821 2.434336 TCGAGGGGGACTGATAAATGTG 59.566 50.000 0.00 0.00 0.00 3.21
2227 4822 2.485479 CGAGGGGGACTGATAAATGTGG 60.485 54.545 0.00 0.00 0.00 4.17
2228 4823 2.509964 GAGGGGGACTGATAAATGTGGT 59.490 50.000 0.00 0.00 0.00 4.16
2229 4824 2.926329 AGGGGGACTGATAAATGTGGTT 59.074 45.455 0.00 0.00 0.00 3.67
2230 4825 4.116113 AGGGGGACTGATAAATGTGGTTA 58.884 43.478 0.00 0.00 0.00 2.85
2231 4826 4.079958 AGGGGGACTGATAAATGTGGTTAC 60.080 45.833 0.00 0.00 0.00 2.50
2232 4827 4.204799 GGGGACTGATAAATGTGGTTACC 58.795 47.826 0.00 0.00 0.00 2.85
2233 4828 4.324719 GGGGACTGATAAATGTGGTTACCA 60.325 45.833 0.00 0.00 0.00 3.25
2255 4850 3.508744 GGTTACCGAGAAATACCGACA 57.491 47.619 0.00 0.00 0.00 4.35
2256 4851 3.848726 GGTTACCGAGAAATACCGACAA 58.151 45.455 0.00 0.00 0.00 3.18
2257 4852 4.244862 GGTTACCGAGAAATACCGACAAA 58.755 43.478 0.00 0.00 0.00 2.83
2258 4853 4.872124 GGTTACCGAGAAATACCGACAAAT 59.128 41.667 0.00 0.00 0.00 2.32
2259 4854 6.042143 GGTTACCGAGAAATACCGACAAATA 58.958 40.000 0.00 0.00 0.00 1.40
2260 4855 6.019559 GGTTACCGAGAAATACCGACAAATAC 60.020 42.308 0.00 0.00 0.00 1.89
2261 4856 4.436332 ACCGAGAAATACCGACAAATACC 58.564 43.478 0.00 0.00 0.00 2.73
2262 4857 3.488310 CCGAGAAATACCGACAAATACCG 59.512 47.826 0.00 0.00 0.00 4.02
2263 4858 4.353737 CGAGAAATACCGACAAATACCGA 58.646 43.478 0.00 0.00 0.00 4.69
2264 4859 4.440103 CGAGAAATACCGACAAATACCGAG 59.560 45.833 0.00 0.00 0.00 4.63
2265 4860 5.585390 GAGAAATACCGACAAATACCGAGA 58.415 41.667 0.00 0.00 0.00 4.04
2266 4861 5.969423 AGAAATACCGACAAATACCGAGAA 58.031 37.500 0.00 0.00 0.00 2.87
2267 4862 6.579865 AGAAATACCGACAAATACCGAGAAT 58.420 36.000 0.00 0.00 0.00 2.40
2268 4863 7.719483 AGAAATACCGACAAATACCGAGAATA 58.281 34.615 0.00 0.00 0.00 1.75
2269 4864 8.365647 AGAAATACCGACAAATACCGAGAATAT 58.634 33.333 0.00 0.00 0.00 1.28
2270 4865 8.897872 AAATACCGACAAATACCGAGAATATT 57.102 30.769 0.00 0.00 0.00 1.28
2271 4866 8.897872 AATACCGACAAATACCGAGAATATTT 57.102 30.769 0.00 0.00 33.45 1.40
2272 4867 6.839820 ACCGACAAATACCGAGAATATTTC 57.160 37.500 0.00 0.00 31.33 2.17
2273 4868 5.461078 ACCGACAAATACCGAGAATATTTCG 59.539 40.000 10.96 10.96 37.78 3.46
2274 4869 5.688621 CCGACAAATACCGAGAATATTTCGA 59.311 40.000 16.51 0.00 40.36 3.71
2275 4870 6.129168 CCGACAAATACCGAGAATATTTCGAG 60.129 42.308 16.51 11.24 40.36 4.04
2276 4871 6.526566 ACAAATACCGAGAATATTTCGAGC 57.473 37.500 16.51 0.00 40.36 5.03
2277 4872 5.175126 ACAAATACCGAGAATATTTCGAGCG 59.825 40.000 16.51 5.82 40.36 5.03
2278 4873 4.761235 ATACCGAGAATATTTCGAGCGA 57.239 40.909 16.51 0.00 40.36 4.93
2279 4874 3.431922 ACCGAGAATATTTCGAGCGAA 57.568 42.857 16.51 0.55 40.36 4.70
2280 4875 3.978687 ACCGAGAATATTTCGAGCGAAT 58.021 40.909 16.51 0.37 40.36 3.34
2281 4876 4.369182 ACCGAGAATATTTCGAGCGAATT 58.631 39.130 16.51 5.78 40.36 2.17
2282 4877 4.809426 ACCGAGAATATTTCGAGCGAATTT 59.191 37.500 16.51 1.59 40.36 1.82
2283 4878 5.293569 ACCGAGAATATTTCGAGCGAATTTT 59.706 36.000 16.51 1.26 40.36 1.82
2284 4879 6.477688 ACCGAGAATATTTCGAGCGAATTTTA 59.522 34.615 16.51 0.49 40.36 1.52
2285 4880 7.170998 ACCGAGAATATTTCGAGCGAATTTTAT 59.829 33.333 16.51 0.00 40.36 1.40
2286 4881 8.644619 CCGAGAATATTTCGAGCGAATTTTATA 58.355 33.333 16.51 2.20 40.36 0.98
2287 4882 9.663491 CGAGAATATTTCGAGCGAATTTTATAG 57.337 33.333 6.12 0.00 40.36 1.31
2295 4890 9.834628 TTTCGAGCGAATTTTATAGTTGAATTT 57.165 25.926 6.12 0.00 33.79 1.82
2296 4891 9.834628 TTCGAGCGAATTTTATAGTTGAATTTT 57.165 25.926 0.55 0.00 0.00 1.82
2297 4892 9.272901 TCGAGCGAATTTTATAGTTGAATTTTG 57.727 29.630 0.00 0.00 0.00 2.44
2298 4893 9.272901 CGAGCGAATTTTATAGTTGAATTTTGA 57.727 29.630 0.00 0.00 0.00 2.69
2333 4928 8.970691 AGAAAATGAACGAATATTCAAACCAG 57.029 30.769 15.57 0.72 41.78 4.00
2334 4929 8.792633 AGAAAATGAACGAATATTCAAACCAGA 58.207 29.630 15.57 0.00 41.78 3.86
2335 4930 8.970691 AAAATGAACGAATATTCAAACCAGAG 57.029 30.769 15.57 0.00 41.78 3.35
2336 4931 7.921786 AATGAACGAATATTCAAACCAGAGA 57.078 32.000 15.57 0.00 41.78 3.10
2337 4932 6.721571 TGAACGAATATTCAAACCAGAGAC 57.278 37.500 15.57 0.00 35.65 3.36
2338 4933 5.642063 TGAACGAATATTCAAACCAGAGACC 59.358 40.000 15.57 0.00 35.65 3.85
2339 4934 5.422214 ACGAATATTCAAACCAGAGACCT 57.578 39.130 15.57 0.00 0.00 3.85
2340 4935 5.420409 ACGAATATTCAAACCAGAGACCTC 58.580 41.667 15.57 0.00 0.00 3.85
2341 4936 5.187967 ACGAATATTCAAACCAGAGACCTCT 59.812 40.000 15.57 0.00 41.37 3.69
2342 4937 5.751028 CGAATATTCAAACCAGAGACCTCTC 59.249 44.000 15.57 0.00 43.17 3.20
2343 4938 6.627087 AATATTCAAACCAGAGACCTCTCA 57.373 37.500 5.13 0.00 45.21 3.27
2344 4939 4.982241 ATTCAAACCAGAGACCTCTCAA 57.018 40.909 5.13 0.00 45.21 3.02
2345 4940 4.771114 TTCAAACCAGAGACCTCTCAAA 57.229 40.909 5.13 0.00 45.21 2.69
2346 4941 4.771114 TCAAACCAGAGACCTCTCAAAA 57.229 40.909 5.13 0.00 45.21 2.44
2347 4942 4.451900 TCAAACCAGAGACCTCTCAAAAC 58.548 43.478 5.13 0.00 45.21 2.43
2348 4943 4.080582 TCAAACCAGAGACCTCTCAAAACA 60.081 41.667 5.13 0.00 45.21 2.83
2349 4944 3.760580 ACCAGAGACCTCTCAAAACAG 57.239 47.619 5.13 0.00 45.21 3.16
2350 4945 2.370189 ACCAGAGACCTCTCAAAACAGG 59.630 50.000 5.13 0.00 45.21 4.00
2351 4946 2.634940 CCAGAGACCTCTCAAAACAGGA 59.365 50.000 5.13 0.00 45.21 3.86
2352 4947 3.071602 CCAGAGACCTCTCAAAACAGGAA 59.928 47.826 5.13 0.00 45.21 3.36
2353 4948 4.061596 CAGAGACCTCTCAAAACAGGAAC 58.938 47.826 5.13 0.00 45.21 3.62
2354 4949 3.970640 AGAGACCTCTCAAAACAGGAACT 59.029 43.478 5.13 0.00 45.21 3.01
2355 4950 5.011125 CAGAGACCTCTCAAAACAGGAACTA 59.989 44.000 5.13 0.00 45.21 2.24
2356 4951 5.245075 AGAGACCTCTCAAAACAGGAACTAG 59.755 44.000 5.13 0.00 45.21 2.57
2357 4952 4.284746 AGACCTCTCAAAACAGGAACTAGG 59.715 45.833 0.00 0.00 36.02 3.02
2358 4953 3.974642 ACCTCTCAAAACAGGAACTAGGT 59.025 43.478 0.00 0.00 36.02 3.08
2359 4954 4.412528 ACCTCTCAAAACAGGAACTAGGTT 59.587 41.667 0.00 0.00 36.02 3.50
2360 4955 4.757149 CCTCTCAAAACAGGAACTAGGTTG 59.243 45.833 0.00 0.00 36.02 3.77
2361 4956 4.134563 TCTCAAAACAGGAACTAGGTTGC 58.865 43.478 0.00 0.00 36.02 4.17
2362 4957 4.137543 CTCAAAACAGGAACTAGGTTGCT 58.862 43.478 0.00 0.00 44.62 3.91
2363 4958 5.071250 TCTCAAAACAGGAACTAGGTTGCTA 59.929 40.000 4.28 0.00 42.02 3.49
2364 4959 5.061179 TCAAAACAGGAACTAGGTTGCTAC 58.939 41.667 4.28 0.00 42.02 3.58
2365 4960 3.697619 AACAGGAACTAGGTTGCTACC 57.302 47.619 9.54 9.54 42.02 3.18
2366 4961 2.616524 ACAGGAACTAGGTTGCTACCA 58.383 47.619 19.71 4.87 42.02 3.25
2367 4962 2.976882 ACAGGAACTAGGTTGCTACCAA 59.023 45.455 19.71 0.00 42.02 3.67
2368 4963 3.244457 ACAGGAACTAGGTTGCTACCAAC 60.244 47.826 19.71 5.58 42.02 3.77
2369 4964 2.976882 AGGAACTAGGTTGCTACCAACA 59.023 45.455 19.71 3.35 45.66 3.33
2370 4965 3.587506 AGGAACTAGGTTGCTACCAACAT 59.412 43.478 19.71 2.91 45.66 2.71
2371 4966 4.565652 AGGAACTAGGTTGCTACCAACATG 60.566 45.833 19.71 6.77 45.66 3.21
2379 4974 2.374184 TGCTACCAACATGCCATAACC 58.626 47.619 0.00 0.00 0.00 2.85
2380 4975 2.291217 TGCTACCAACATGCCATAACCA 60.291 45.455 0.00 0.00 0.00 3.67
2381 4976 2.757868 GCTACCAACATGCCATAACCAA 59.242 45.455 0.00 0.00 0.00 3.67
2382 4977 3.428862 GCTACCAACATGCCATAACCAAC 60.429 47.826 0.00 0.00 0.00 3.77
2383 4978 2.888212 ACCAACATGCCATAACCAACT 58.112 42.857 0.00 0.00 0.00 3.16
2384 4979 3.238597 ACCAACATGCCATAACCAACTT 58.761 40.909 0.00 0.00 0.00 2.66
2385 4980 3.645687 ACCAACATGCCATAACCAACTTT 59.354 39.130 0.00 0.00 0.00 2.66
2386 4981 4.244862 CCAACATGCCATAACCAACTTTC 58.755 43.478 0.00 0.00 0.00 2.62
2387 4982 4.262377 CCAACATGCCATAACCAACTTTCA 60.262 41.667 0.00 0.00 0.00 2.69
2388 4983 5.481105 CAACATGCCATAACCAACTTTCAT 58.519 37.500 0.00 0.00 0.00 2.57
2389 4984 5.743636 ACATGCCATAACCAACTTTCATT 57.256 34.783 0.00 0.00 0.00 2.57
2390 4985 5.481105 ACATGCCATAACCAACTTTCATTG 58.519 37.500 0.00 0.00 0.00 2.82
2391 4986 3.924144 TGCCATAACCAACTTTCATTGC 58.076 40.909 0.00 0.00 0.00 3.56
2392 4987 3.323115 TGCCATAACCAACTTTCATTGCA 59.677 39.130 0.00 0.00 0.00 4.08
2393 4988 4.020396 TGCCATAACCAACTTTCATTGCAT 60.020 37.500 0.00 0.00 0.00 3.96
2394 4989 4.937015 GCCATAACCAACTTTCATTGCATT 59.063 37.500 0.00 0.00 0.00 3.56
2395 4990 6.105333 GCCATAACCAACTTTCATTGCATTA 58.895 36.000 0.00 0.00 0.00 1.90
2396 4991 6.593382 GCCATAACCAACTTTCATTGCATTAA 59.407 34.615 0.00 0.00 0.00 1.40
2397 4992 7.280652 GCCATAACCAACTTTCATTGCATTAAT 59.719 33.333 0.00 0.00 0.00 1.40
2398 4993 9.165035 CCATAACCAACTTTCATTGCATTAATT 57.835 29.630 0.00 0.00 0.00 1.40
2402 4997 8.986477 ACCAACTTTCATTGCATTAATTAGAC 57.014 30.769 0.00 0.00 0.00 2.59
2403 4998 8.034804 ACCAACTTTCATTGCATTAATTAGACC 58.965 33.333 0.00 0.00 0.00 3.85
2404 4999 7.492344 CCAACTTTCATTGCATTAATTAGACCC 59.508 37.037 0.00 0.00 0.00 4.46
2405 5000 7.961326 ACTTTCATTGCATTAATTAGACCCT 57.039 32.000 0.00 0.00 0.00 4.34
2406 5001 9.474313 AACTTTCATTGCATTAATTAGACCCTA 57.526 29.630 0.00 0.00 0.00 3.53
2407 5002 8.903820 ACTTTCATTGCATTAATTAGACCCTAC 58.096 33.333 0.00 0.00 0.00 3.18
2408 5003 8.815565 TTTCATTGCATTAATTAGACCCTACA 57.184 30.769 0.00 0.00 0.00 2.74
2409 5004 8.995027 TTCATTGCATTAATTAGACCCTACAT 57.005 30.769 0.00 0.00 0.00 2.29
2411 5006 9.502091 TCATTGCATTAATTAGACCCTACATAC 57.498 33.333 0.00 0.00 0.00 2.39
2412 5007 8.730680 CATTGCATTAATTAGACCCTACATACC 58.269 37.037 0.00 0.00 0.00 2.73
2413 5008 7.626999 TGCATTAATTAGACCCTACATACCT 57.373 36.000 0.00 0.00 0.00 3.08
2414 5009 8.041143 TGCATTAATTAGACCCTACATACCTT 57.959 34.615 0.00 0.00 0.00 3.50
2415 5010 9.161572 TGCATTAATTAGACCCTACATACCTTA 57.838 33.333 0.00 0.00 0.00 2.69
2416 5011 9.433153 GCATTAATTAGACCCTACATACCTTAC 57.567 37.037 0.00 0.00 0.00 2.34
2419 5014 9.719433 TTAATTAGACCCTACATACCTTACTGT 57.281 33.333 0.00 0.00 0.00 3.55
2421 5016 9.719433 AATTAGACCCTACATACCTTACTGTAA 57.281 33.333 0.00 0.00 0.00 2.41
2422 5017 9.719433 ATTAGACCCTACATACCTTACTGTAAA 57.281 33.333 1.46 0.00 0.00 2.01
2423 5018 9.719433 TTAGACCCTACATACCTTACTGTAAAT 57.281 33.333 1.46 0.00 0.00 1.40
2424 5019 8.247666 AGACCCTACATACCTTACTGTAAATC 57.752 38.462 1.46 0.00 0.00 2.17
2425 5020 7.014038 AGACCCTACATACCTTACTGTAAATCG 59.986 40.741 1.46 0.00 0.00 3.34
2426 5021 6.835488 ACCCTACATACCTTACTGTAAATCGA 59.165 38.462 1.46 0.00 0.00 3.59
2427 5022 7.014038 ACCCTACATACCTTACTGTAAATCGAG 59.986 40.741 1.46 0.00 0.00 4.04
2428 5023 7.014038 CCCTACATACCTTACTGTAAATCGAGT 59.986 40.741 1.46 0.00 0.00 4.18
2429 5024 7.861372 CCTACATACCTTACTGTAAATCGAGTG 59.139 40.741 1.46 0.20 0.00 3.51
2430 5025 7.166691 ACATACCTTACTGTAAATCGAGTGT 57.833 36.000 1.46 0.73 0.00 3.55
2431 5026 7.609056 ACATACCTTACTGTAAATCGAGTGTT 58.391 34.615 1.46 0.00 0.00 3.32
2432 5027 8.092687 ACATACCTTACTGTAAATCGAGTGTTT 58.907 33.333 1.46 0.00 0.00 2.83
2433 5028 9.577110 CATACCTTACTGTAAATCGAGTGTTTA 57.423 33.333 1.46 0.00 0.00 2.01
2435 5030 8.891671 ACCTTACTGTAAATCGAGTGTTTAAA 57.108 30.769 1.46 0.00 0.00 1.52
2436 5031 9.498176 ACCTTACTGTAAATCGAGTGTTTAAAT 57.502 29.630 1.46 0.00 0.00 1.40
2484 5079 5.459110 TTTTGCTCGGTATGACGATTTAC 57.541 39.130 0.00 0.00 42.62 2.01
2485 5080 3.088194 TGCTCGGTATGACGATTTACC 57.912 47.619 0.00 0.00 42.62 2.85
2490 5085 3.022607 GGTATGACGATTTACCGAGGG 57.977 52.381 0.00 0.00 0.00 4.30
2491 5086 2.288640 GGTATGACGATTTACCGAGGGG 60.289 54.545 0.00 0.00 40.11 4.79
2492 5087 0.106149 ATGACGATTTACCGAGGGGC 59.894 55.000 0.00 0.00 36.48 5.80
2493 5088 1.259142 TGACGATTTACCGAGGGGCA 61.259 55.000 0.00 0.00 36.48 5.36
2494 5089 0.808847 GACGATTTACCGAGGGGCAC 60.809 60.000 0.00 0.00 36.48 5.01
2495 5090 1.881252 CGATTTACCGAGGGGCACG 60.881 63.158 0.00 0.00 36.48 5.34
2502 5097 4.120085 CGAGGGGCACGGAAATAC 57.880 61.111 0.00 0.00 0.00 1.89
2503 5098 1.881252 CGAGGGGCACGGAAATACG 60.881 63.158 0.00 0.00 40.31 3.06
2513 5108 3.615224 ACGGAAATACGTGGTAACCAT 57.385 42.857 0.00 0.00 46.64 3.55
2514 5109 3.264104 ACGGAAATACGTGGTAACCATG 58.736 45.455 0.00 0.00 46.64 3.66
2515 5110 2.610374 CGGAAATACGTGGTAACCATGG 59.390 50.000 11.19 11.19 44.23 3.66
2516 5111 2.946990 GGAAATACGTGGTAACCATGGG 59.053 50.000 18.09 0.00 44.23 4.00
2517 5112 3.370739 GGAAATACGTGGTAACCATGGGA 60.371 47.826 18.09 0.00 44.23 4.37
2518 5113 4.263435 GAAATACGTGGTAACCATGGGAA 58.737 43.478 18.09 0.00 44.23 3.97
2519 5114 4.304048 AATACGTGGTAACCATGGGAAA 57.696 40.909 18.09 0.00 44.23 3.13
2520 5115 2.891191 ACGTGGTAACCATGGGAAAT 57.109 45.000 18.09 1.59 44.23 2.17
2521 5116 2.718563 ACGTGGTAACCATGGGAAATC 58.281 47.619 18.09 1.35 44.23 2.17
2522 5117 2.307686 ACGTGGTAACCATGGGAAATCT 59.692 45.455 18.09 0.00 44.23 2.40
2523 5118 3.245122 ACGTGGTAACCATGGGAAATCTT 60.245 43.478 18.09 2.18 44.23 2.40
2524 5119 3.128589 CGTGGTAACCATGGGAAATCTTG 59.871 47.826 18.09 0.00 36.92 3.02
2525 5120 4.340617 GTGGTAACCATGGGAAATCTTGA 58.659 43.478 18.09 0.00 35.28 3.02
2526 5121 4.770010 GTGGTAACCATGGGAAATCTTGAA 59.230 41.667 18.09 0.00 35.28 2.69
2527 5122 5.245075 GTGGTAACCATGGGAAATCTTGAAA 59.755 40.000 18.09 0.00 35.28 2.69
2528 5123 6.022315 TGGTAACCATGGGAAATCTTGAAAT 58.978 36.000 18.09 0.00 0.00 2.17
2529 5124 6.500049 TGGTAACCATGGGAAATCTTGAAATT 59.500 34.615 18.09 0.00 0.00 1.82
2530 5125 7.017056 TGGTAACCATGGGAAATCTTGAAATTT 59.983 33.333 18.09 0.00 0.00 1.82
2531 5126 7.549134 GGTAACCATGGGAAATCTTGAAATTTC 59.451 37.037 18.09 11.41 42.41 2.17
2532 5127 5.723295 ACCATGGGAAATCTTGAAATTTCG 58.277 37.500 18.09 0.46 43.52 3.46
2533 5128 5.480073 ACCATGGGAAATCTTGAAATTTCGA 59.520 36.000 18.09 10.62 43.52 3.71
2534 5129 5.807011 CCATGGGAAATCTTGAAATTTCGAC 59.193 40.000 13.34 0.00 43.52 4.20
2535 5130 6.350445 CCATGGGAAATCTTGAAATTTCGACT 60.350 38.462 13.34 0.00 43.52 4.18
2536 5131 6.012658 TGGGAAATCTTGAAATTTCGACTG 57.987 37.500 13.34 1.46 43.52 3.51
2537 5132 5.048083 TGGGAAATCTTGAAATTTCGACTGG 60.048 40.000 13.34 0.77 43.52 4.00
2538 5133 5.048013 GGGAAATCTTGAAATTTCGACTGGT 60.048 40.000 13.34 0.00 43.52 4.00
2539 5134 6.150474 GGGAAATCTTGAAATTTCGACTGGTA 59.850 38.462 13.34 0.00 43.52 3.25
2540 5135 7.308951 GGGAAATCTTGAAATTTCGACTGGTAA 60.309 37.037 13.34 0.00 43.52 2.85
2541 5136 7.537649 GGAAATCTTGAAATTTCGACTGGTAAC 59.462 37.037 13.34 1.06 43.52 2.50
2542 5137 5.934935 TCTTGAAATTTCGACTGGTAACC 57.065 39.130 13.34 0.00 0.00 2.85
2543 5138 5.369833 TCTTGAAATTTCGACTGGTAACCA 58.630 37.500 13.34 0.00 0.00 3.67
2544 5139 5.823570 TCTTGAAATTTCGACTGGTAACCAA 59.176 36.000 13.34 0.00 30.80 3.67
2545 5140 6.319152 TCTTGAAATTTCGACTGGTAACCAAA 59.681 34.615 13.34 0.00 30.80 3.28
2546 5141 6.452494 TGAAATTTCGACTGGTAACCAAAA 57.548 33.333 13.34 0.00 30.80 2.44
2547 5142 6.267070 TGAAATTTCGACTGGTAACCAAAAC 58.733 36.000 13.34 0.00 30.80 2.43
2548 5143 4.841443 ATTTCGACTGGTAACCAAAACC 57.159 40.909 0.00 0.00 37.53 3.27
2549 5144 3.564053 TTCGACTGGTAACCAAAACCT 57.436 42.857 0.00 0.00 37.91 3.50
2550 5145 3.564053 TCGACTGGTAACCAAAACCTT 57.436 42.857 0.00 0.00 37.91 3.50
2551 5146 3.207778 TCGACTGGTAACCAAAACCTTG 58.792 45.455 0.00 0.00 37.91 3.61
2625 5220 0.110486 GTTTTGCCCTGACCTGGAGA 59.890 55.000 0.00 0.00 0.00 3.71
2642 5237 1.615883 GAGATTGATAGCTGGCTCGGA 59.384 52.381 0.00 0.00 0.00 4.55
2829 5424 4.832266 AGATCTGCTACTCCATGGACTAAG 59.168 45.833 11.44 9.48 0.00 2.18
2845 5440 4.530161 GGACTAAGCATCCAGAGACCATAT 59.470 45.833 0.00 0.00 36.15 1.78
2846 5441 5.717178 GGACTAAGCATCCAGAGACCATATA 59.283 44.000 0.00 0.00 36.15 0.86
2847 5442 6.382570 GGACTAAGCATCCAGAGACCATATAT 59.617 42.308 0.00 0.00 36.15 0.86
2848 5443 7.561722 GGACTAAGCATCCAGAGACCATATATA 59.438 40.741 0.00 0.00 36.15 0.86
2915 5524 8.594550 GGAATTATATACTCCCTAAGAACTGCA 58.405 37.037 0.00 0.00 0.00 4.41
3001 5626 5.911752 ACATGTTTGCAAAGATTGGTGTAA 58.088 33.333 18.43 0.00 0.00 2.41
3033 5658 5.515797 AGTAACTAGAACATGATAGCGCA 57.484 39.130 11.47 0.00 0.00 6.09
3039 5664 1.942657 GAACATGATAGCGCATGGTGT 59.057 47.619 11.47 4.81 45.68 4.16
3131 5767 5.178096 TGAGATGCCTGGTAGAATTTGAA 57.822 39.130 0.00 0.00 0.00 2.69
3132 5768 5.759059 TGAGATGCCTGGTAGAATTTGAAT 58.241 37.500 0.00 0.00 0.00 2.57
3133 5769 6.189859 TGAGATGCCTGGTAGAATTTGAATT 58.810 36.000 0.00 0.00 0.00 2.17
3134 5770 7.345691 TGAGATGCCTGGTAGAATTTGAATTA 58.654 34.615 0.00 0.00 0.00 1.40
3135 5771 8.000709 TGAGATGCCTGGTAGAATTTGAATTAT 58.999 33.333 0.00 0.00 0.00 1.28
3136 5772 8.773033 AGATGCCTGGTAGAATTTGAATTATT 57.227 30.769 0.00 0.00 0.00 1.40
3137 5773 9.205513 AGATGCCTGGTAGAATTTGAATTATTT 57.794 29.630 0.00 0.00 0.00 1.40
3138 5774 9.252962 GATGCCTGGTAGAATTTGAATTATTTG 57.747 33.333 0.00 0.00 0.00 2.32
3139 5775 8.359875 TGCCTGGTAGAATTTGAATTATTTGA 57.640 30.769 0.00 0.00 0.00 2.69
3190 5826 6.156519 GGTATTTTCTTTTTCAAGGATGCGT 58.843 36.000 0.00 0.00 0.00 5.24
3219 5855 4.080313 AGCATAGATAGAAGGGCCCATA 57.920 45.455 27.56 14.43 0.00 2.74
3235 5871 4.025040 CCCATAATAGGCAGAGCATTCA 57.975 45.455 0.00 0.00 0.00 2.57
3279 5915 3.446442 AAGCCAAGAAGATCCACATGT 57.554 42.857 0.00 0.00 0.00 3.21
3306 5942 1.485066 CTCGCCACTACCCAACCTATT 59.515 52.381 0.00 0.00 0.00 1.73
3307 5943 1.208535 TCGCCACTACCCAACCTATTG 59.791 52.381 0.00 0.00 35.40 1.90
3343 5979 2.675658 AGCCTTGCTCCCAAAGTAAA 57.324 45.000 0.00 0.00 30.62 2.01
3361 5997 3.953775 CCCGCGGCCCTCCAATAT 61.954 66.667 22.85 0.00 0.00 1.28
3387 6023 3.643792 CCCTCAAACTCGATCCTCCTAAT 59.356 47.826 0.00 0.00 0.00 1.73
3447 6083 2.236146 TGTCGTTCCTGTGCTTCCATAT 59.764 45.455 0.00 0.00 0.00 1.78
3457 6093 2.161012 GTGCTTCCATATCATCCATGCG 59.839 50.000 0.00 0.00 0.00 4.73
3460 6096 3.667360 CTTCCATATCATCCATGCGACA 58.333 45.455 0.00 0.00 0.00 4.35
3484 6120 0.541998 TCACCACGGTCCATGTCTCT 60.542 55.000 0.00 0.00 0.00 3.10
3492 6128 3.581332 ACGGTCCATGTCTCTTTCCTTAA 59.419 43.478 0.00 0.00 0.00 1.85
3493 6129 3.933332 CGGTCCATGTCTCTTTCCTTAAC 59.067 47.826 0.00 0.00 0.00 2.01
3496 6132 4.393371 GTCCATGTCTCTTTCCTTAACTGC 59.607 45.833 0.00 0.00 0.00 4.40
3536 6172 1.039068 CCACCATTGCACCAAGTTGA 58.961 50.000 3.87 0.00 0.00 3.18
3544 6180 0.238289 GCACCAAGTTGACATCCACG 59.762 55.000 3.87 0.00 0.00 4.94
3545 6181 0.874390 CACCAAGTTGACATCCACGG 59.126 55.000 3.87 0.00 0.00 4.94
3562 6198 1.910580 CGGTTGGCATCCAGGTAGGT 61.911 60.000 14.64 0.00 39.02 3.08
3565 6201 2.025699 GGTTGGCATCCAGGTAGGTTTA 60.026 50.000 9.74 0.00 39.02 2.01
3575 6211 1.028330 GGTAGGTTTACCCCAAGCGC 61.028 60.000 0.00 0.00 43.06 5.92
3589 6225 3.058160 GCGCTGGTGATGCTGGTT 61.058 61.111 0.00 0.00 0.00 3.67
3598 6234 1.949525 GTGATGCTGGTTCACACTTGT 59.050 47.619 0.00 0.00 42.43 3.16
3605 6241 1.083401 GTTCACACTTGTCGCGCTG 60.083 57.895 5.56 0.00 0.00 5.18
3631 6267 2.646930 CAGCCCAATAGCAAGTGATCA 58.353 47.619 0.00 0.00 34.23 2.92
3634 6270 4.823442 CAGCCCAATAGCAAGTGATCAATA 59.177 41.667 0.00 0.00 34.23 1.90
3649 6285 5.065731 GTGATCAATAGTTTCCTGAGCTTGG 59.934 44.000 0.00 0.00 0.00 3.61
3652 6288 2.743636 TAGTTTCCTGAGCTTGGTCG 57.256 50.000 6.60 0.00 0.00 4.79
3676 6312 1.852157 ATGGGCATGTCGAAGGGTGT 61.852 55.000 0.00 0.00 0.00 4.16
3679 6315 2.040544 GCATGTCGAAGGGTGTGGG 61.041 63.158 0.00 0.00 0.00 4.61
3685 6321 2.883828 CGAAGGGTGTGGGAGCTGT 61.884 63.158 0.00 0.00 0.00 4.40
3696 6332 1.133823 TGGGAGCTGTCTTCTTTGCAA 60.134 47.619 0.00 0.00 0.00 4.08
3728 6364 1.375396 CAACATCGGTTCCTCGCCA 60.375 57.895 0.00 0.00 34.21 5.69
3736 6372 3.565214 TTCCTCGCCACCAGCCAA 61.565 61.111 0.00 0.00 38.78 4.52
3775 6411 4.206697 GGAGCCCTCGATCTCCAT 57.793 61.111 18.21 0.00 46.24 3.41
3780 6416 3.372133 GGAGCCCTCGATCTCCATATCTA 60.372 52.174 18.21 0.00 46.24 1.98
3783 6419 3.181480 GCCCTCGATCTCCATATCTAAGC 60.181 52.174 0.00 0.00 0.00 3.09
3786 6422 3.687125 TCGATCTCCATATCTAAGCGGT 58.313 45.455 0.00 0.00 0.00 5.68
3787 6423 3.440522 TCGATCTCCATATCTAAGCGGTG 59.559 47.826 0.00 0.00 0.00 4.94
3788 6424 3.440522 CGATCTCCATATCTAAGCGGTGA 59.559 47.826 0.00 0.00 0.00 4.02
3789 6425 4.097135 CGATCTCCATATCTAAGCGGTGAT 59.903 45.833 0.00 0.00 35.13 3.06
3790 6426 4.790765 TCTCCATATCTAAGCGGTGATG 57.209 45.455 0.00 0.00 0.00 3.07
3791 6427 3.511540 TCTCCATATCTAAGCGGTGATGG 59.488 47.826 0.00 0.00 36.06 3.51
3792 6428 2.567169 TCCATATCTAAGCGGTGATGGG 59.433 50.000 10.80 6.89 35.55 4.00
3793 6429 2.355108 CCATATCTAAGCGGTGATGGGG 60.355 54.545 0.00 0.00 31.95 4.96
3794 6430 2.391926 TATCTAAGCGGTGATGGGGA 57.608 50.000 0.00 0.00 0.00 4.81
3795 6431 1.507140 ATCTAAGCGGTGATGGGGAA 58.493 50.000 0.00 0.00 0.00 3.97
3796 6432 0.539986 TCTAAGCGGTGATGGGGAAC 59.460 55.000 0.00 0.00 0.00 3.62
3797 6433 0.810031 CTAAGCGGTGATGGGGAACG 60.810 60.000 0.00 0.00 0.00 3.95
3798 6434 1.546589 TAAGCGGTGATGGGGAACGT 61.547 55.000 0.00 0.00 0.00 3.99
3799 6435 2.359478 GCGGTGATGGGGAACGTT 60.359 61.111 0.00 0.00 0.00 3.99
3800 6436 2.686816 GCGGTGATGGGGAACGTTG 61.687 63.158 5.00 0.00 0.00 4.10
3801 6437 2.686816 CGGTGATGGGGAACGTTGC 61.687 63.158 11.85 11.85 0.00 4.17
3802 6438 1.602323 GGTGATGGGGAACGTTGCA 60.602 57.895 21.74 1.86 0.00 4.08
3803 6439 1.586154 GGTGATGGGGAACGTTGCAG 61.586 60.000 21.74 0.00 0.00 4.41
3804 6440 0.605319 GTGATGGGGAACGTTGCAGA 60.605 55.000 21.74 7.28 0.00 4.26
3805 6441 0.109532 TGATGGGGAACGTTGCAGAA 59.890 50.000 21.74 6.46 0.00 3.02
3806 6442 1.243902 GATGGGGAACGTTGCAGAAA 58.756 50.000 21.74 3.91 0.00 2.52
3807 6443 1.611491 GATGGGGAACGTTGCAGAAAA 59.389 47.619 21.74 2.11 0.00 2.29
3808 6444 1.698506 TGGGGAACGTTGCAGAAAAT 58.301 45.000 21.74 0.00 0.00 1.82
3809 6445 2.865079 TGGGGAACGTTGCAGAAAATA 58.135 42.857 21.74 0.00 0.00 1.40
3810 6446 3.223435 TGGGGAACGTTGCAGAAAATAA 58.777 40.909 21.74 0.00 0.00 1.40
3811 6447 3.637229 TGGGGAACGTTGCAGAAAATAAA 59.363 39.130 21.74 0.00 0.00 1.40
3812 6448 4.099573 TGGGGAACGTTGCAGAAAATAAAA 59.900 37.500 21.74 0.00 0.00 1.52
3813 6449 5.051153 GGGGAACGTTGCAGAAAATAAAAA 58.949 37.500 21.74 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.436957 AGTTCGTCTAATTCACATTTAGATGTT 57.563 29.630 0.00 0.00 43.92 2.71
78 79 8.696374 CGGTCATGGATAGTAGTATGGATTAAT 58.304 37.037 0.00 0.00 0.00 1.40
95 96 2.746412 CTTGGGTGCACGGTCATGGA 62.746 60.000 11.45 0.00 0.00 3.41
101 102 1.296715 GATCTCTTGGGTGCACGGT 59.703 57.895 11.45 0.00 0.00 4.83
133 134 5.177326 CCGGTAGTAGTATGGACTAGCTAG 58.823 50.000 19.44 19.44 42.89 3.42
134 135 4.564406 GCCGGTAGTAGTATGGACTAGCTA 60.564 50.000 1.90 0.00 42.89 3.32
135 136 3.810033 GCCGGTAGTAGTATGGACTAGCT 60.810 52.174 1.90 0.00 42.89 3.32
136 137 2.487372 GCCGGTAGTAGTATGGACTAGC 59.513 54.545 1.90 2.65 42.07 3.42
229 243 4.494484 CATCTCCAGTACACGATTGTTGA 58.506 43.478 0.00 0.00 37.15 3.18
230 244 3.062639 GCATCTCCAGTACACGATTGTTG 59.937 47.826 0.00 0.00 37.15 3.33
231 245 3.055819 AGCATCTCCAGTACACGATTGTT 60.056 43.478 0.00 0.00 37.15 2.83
232 246 2.497675 AGCATCTCCAGTACACGATTGT 59.502 45.455 0.00 0.00 40.02 2.71
233 247 3.170791 AGCATCTCCAGTACACGATTG 57.829 47.619 0.00 0.00 0.00 2.67
234 248 3.895232 AAGCATCTCCAGTACACGATT 57.105 42.857 0.00 0.00 0.00 3.34
235 249 5.303078 AGATTAAGCATCTCCAGTACACGAT 59.697 40.000 0.00 0.00 37.79 3.73
236 250 4.645136 AGATTAAGCATCTCCAGTACACGA 59.355 41.667 0.00 0.00 37.79 4.35
386 405 1.153025 GCCTATGGGTTTCGGGGAC 60.153 63.158 0.00 0.00 34.45 4.46
400 419 3.543884 CCAAACTTAGTGGCGCCTA 57.456 52.632 29.70 10.06 0.00 3.93
410 429 4.000988 GGATCGAACTTCAGCCAAACTTA 58.999 43.478 0.00 0.00 0.00 2.24
427 449 5.992829 AGACTAGTATGTAGTGACTGGATCG 59.007 44.000 0.00 0.00 0.00 3.69
502 701 9.308000 AGGTTTCATTATTTAGTTGTGGATGAA 57.692 29.630 0.00 0.00 32.16 2.57
677 1181 2.738846 GAGAGTGGTGTTCGTACTCGTA 59.261 50.000 0.00 0.00 44.16 3.43
678 1182 1.534595 GAGAGTGGTGTTCGTACTCGT 59.465 52.381 0.00 0.00 44.16 4.18
679 1183 1.805345 AGAGAGTGGTGTTCGTACTCG 59.195 52.381 0.00 0.00 44.16 4.18
680 1184 3.566523 CAAGAGAGTGGTGTTCGTACTC 58.433 50.000 0.00 0.00 40.79 2.59
681 1185 2.296471 CCAAGAGAGTGGTGTTCGTACT 59.704 50.000 0.00 0.00 33.63 2.73
725 3209 3.039202 CTGGCTAACGGCGCAAAGG 62.039 63.158 10.83 0.00 42.94 3.11
749 3233 3.051479 CGTGCATGTGGCTGCTCA 61.051 61.111 0.00 0.00 45.15 4.26
753 3237 4.746951 CGTGCGTGCATGTGGCTG 62.747 66.667 7.93 0.00 45.15 4.85
909 3413 2.274437 GTTGGGTTAGCGTAGGTTAGC 58.726 52.381 0.00 0.00 40.68 3.09
958 3467 3.625764 ACTAATGCTCGTGTGTGTTTGTT 59.374 39.130 0.00 0.00 0.00 2.83
973 3495 2.356069 GAGCACCCAAGCTAACTAATGC 59.644 50.000 0.00 0.00 46.75 3.56
1463 4054 4.713824 AGTGTCAAAATCATCAGCATGG 57.286 40.909 0.00 0.00 36.16 3.66
1492 4087 1.421485 GCATTCGCACGTTCCTGAG 59.579 57.895 0.00 0.00 38.36 3.35
1493 4088 2.379634 CGCATTCGCACGTTCCTGA 61.380 57.895 0.00 0.00 38.40 3.86
1757 4352 0.249120 CACCATACGAGTGGCTCCAA 59.751 55.000 10.10 0.00 43.27 3.53
1769 4364 2.398588 TCCATGGAGAGGACACCATAC 58.601 52.381 11.44 0.00 43.58 2.39
1782 4377 2.239654 GGTTCTTGATCCTGTCCATGGA 59.760 50.000 11.44 11.44 38.06 3.41
1931 4526 2.768253 TCACCTGCGTGAAATCATCT 57.232 45.000 0.00 0.00 46.09 2.90
1986 4581 1.488705 AAGAAGTCCATGGGCACGGA 61.489 55.000 20.74 0.00 0.00 4.69
2166 4761 4.500716 CGGTAACCAAAACCTTGCTTCAAT 60.501 41.667 0.00 0.00 34.66 2.57
2167 4762 3.181485 CGGTAACCAAAACCTTGCTTCAA 60.181 43.478 0.00 0.00 34.66 2.69
2168 4763 2.359531 CGGTAACCAAAACCTTGCTTCA 59.640 45.455 0.00 0.00 34.66 3.02
2169 4764 2.619646 TCGGTAACCAAAACCTTGCTTC 59.380 45.455 0.00 0.00 34.66 3.86
2170 4765 2.657143 TCGGTAACCAAAACCTTGCTT 58.343 42.857 0.00 0.00 34.66 3.91
2171 4766 2.351706 TCGGTAACCAAAACCTTGCT 57.648 45.000 0.00 0.00 34.66 3.91
2172 4767 3.004944 TCATTCGGTAACCAAAACCTTGC 59.995 43.478 0.00 0.00 34.66 4.01
2173 4768 4.320935 CCTCATTCGGTAACCAAAACCTTG 60.321 45.833 0.00 0.00 34.66 3.61
2174 4769 3.824443 CCTCATTCGGTAACCAAAACCTT 59.176 43.478 0.00 0.00 34.66 3.50
2175 4770 3.181437 ACCTCATTCGGTAACCAAAACCT 60.181 43.478 0.00 0.00 34.94 3.50
2176 4771 3.151554 ACCTCATTCGGTAACCAAAACC 58.848 45.455 0.00 0.00 34.94 3.27
2177 4772 5.945466 TTACCTCATTCGGTAACCAAAAC 57.055 39.130 0.00 0.00 42.88 2.43
2185 4780 7.149973 CCTCGATAAAATTACCTCATTCGGTA 58.850 38.462 0.00 0.00 38.49 4.02
2186 4781 5.989777 CCTCGATAAAATTACCTCATTCGGT 59.010 40.000 0.00 0.00 41.10 4.69
2187 4782 5.408604 CCCTCGATAAAATTACCTCATTCGG 59.591 44.000 0.00 0.00 0.00 4.30
2188 4783 5.408604 CCCCTCGATAAAATTACCTCATTCG 59.591 44.000 0.00 0.00 0.00 3.34
2189 4784 5.705905 CCCCCTCGATAAAATTACCTCATTC 59.294 44.000 0.00 0.00 0.00 2.67
2190 4785 5.371472 TCCCCCTCGATAAAATTACCTCATT 59.629 40.000 0.00 0.00 0.00 2.57
2191 4786 4.911522 TCCCCCTCGATAAAATTACCTCAT 59.088 41.667 0.00 0.00 0.00 2.90
2192 4787 4.102054 GTCCCCCTCGATAAAATTACCTCA 59.898 45.833 0.00 0.00 0.00 3.86
2193 4788 4.347292 AGTCCCCCTCGATAAAATTACCTC 59.653 45.833 0.00 0.00 0.00 3.85
2194 4789 4.102681 CAGTCCCCCTCGATAAAATTACCT 59.897 45.833 0.00 0.00 0.00 3.08
2195 4790 4.102054 TCAGTCCCCCTCGATAAAATTACC 59.898 45.833 0.00 0.00 0.00 2.85
2196 4791 5.286267 TCAGTCCCCCTCGATAAAATTAC 57.714 43.478 0.00 0.00 0.00 1.89
2197 4792 7.621006 TTATCAGTCCCCCTCGATAAAATTA 57.379 36.000 0.00 0.00 29.67 1.40
2198 4793 6.509523 TTATCAGTCCCCCTCGATAAAATT 57.490 37.500 0.00 0.00 29.67 1.82
2199 4794 6.509523 TTTATCAGTCCCCCTCGATAAAAT 57.490 37.500 0.00 0.00 37.38 1.82
2200 4795 5.961398 TTTATCAGTCCCCCTCGATAAAA 57.039 39.130 0.00 0.00 37.38 1.52
2201 4796 5.368523 ACATTTATCAGTCCCCCTCGATAAA 59.631 40.000 0.00 0.00 41.82 1.40
2202 4797 4.905456 ACATTTATCAGTCCCCCTCGATAA 59.095 41.667 0.00 0.00 0.00 1.75
2203 4798 4.283467 CACATTTATCAGTCCCCCTCGATA 59.717 45.833 0.00 0.00 0.00 2.92
2204 4799 3.071602 CACATTTATCAGTCCCCCTCGAT 59.928 47.826 0.00 0.00 0.00 3.59
2205 4800 2.434336 CACATTTATCAGTCCCCCTCGA 59.566 50.000 0.00 0.00 0.00 4.04
2206 4801 2.485479 CCACATTTATCAGTCCCCCTCG 60.485 54.545 0.00 0.00 0.00 4.63
2207 4802 2.509964 ACCACATTTATCAGTCCCCCTC 59.490 50.000 0.00 0.00 0.00 4.30
2208 4803 2.573463 ACCACATTTATCAGTCCCCCT 58.427 47.619 0.00 0.00 0.00 4.79
2209 4804 3.382083 AACCACATTTATCAGTCCCCC 57.618 47.619 0.00 0.00 0.00 5.40
2210 4805 4.204799 GGTAACCACATTTATCAGTCCCC 58.795 47.826 0.00 0.00 0.00 4.81
2211 4806 4.850680 TGGTAACCACATTTATCAGTCCC 58.149 43.478 0.00 0.00 0.00 4.46
2235 4830 3.508744 TGTCGGTATTTCTCGGTAACC 57.491 47.619 0.00 0.00 0.00 2.85
2236 4831 6.019559 GGTATTTGTCGGTATTTCTCGGTAAC 60.020 42.308 0.00 0.00 0.00 2.50
2237 4832 6.042143 GGTATTTGTCGGTATTTCTCGGTAA 58.958 40.000 0.00 0.00 0.00 2.85
2238 4833 5.591099 GGTATTTGTCGGTATTTCTCGGTA 58.409 41.667 0.00 0.00 0.00 4.02
2239 4834 4.436332 GGTATTTGTCGGTATTTCTCGGT 58.564 43.478 0.00 0.00 0.00 4.69
2240 4835 3.488310 CGGTATTTGTCGGTATTTCTCGG 59.512 47.826 0.00 0.00 0.00 4.63
2241 4836 4.353737 TCGGTATTTGTCGGTATTTCTCG 58.646 43.478 0.00 0.00 0.00 4.04
2242 4837 5.585390 TCTCGGTATTTGTCGGTATTTCTC 58.415 41.667 0.00 0.00 0.00 2.87
2243 4838 5.587388 TCTCGGTATTTGTCGGTATTTCT 57.413 39.130 0.00 0.00 0.00 2.52
2244 4839 6.839820 ATTCTCGGTATTTGTCGGTATTTC 57.160 37.500 0.00 0.00 0.00 2.17
2245 4840 8.897872 AATATTCTCGGTATTTGTCGGTATTT 57.102 30.769 0.00 0.00 0.00 1.40
2246 4841 8.897872 AAATATTCTCGGTATTTGTCGGTATT 57.102 30.769 0.00 0.00 32.19 1.89
2247 4842 7.327761 CGAAATATTCTCGGTATTTGTCGGTAT 59.672 37.037 10.37 0.00 33.23 2.73
2248 4843 6.638063 CGAAATATTCTCGGTATTTGTCGGTA 59.362 38.462 10.37 0.00 33.23 4.02
2249 4844 5.461078 CGAAATATTCTCGGTATTTGTCGGT 59.539 40.000 10.37 0.00 33.23 4.69
2250 4845 5.688621 TCGAAATATTCTCGGTATTTGTCGG 59.311 40.000 15.30 0.00 36.93 4.79
2251 4846 6.613745 GCTCGAAATATTCTCGGTATTTGTCG 60.614 42.308 15.30 6.03 36.93 4.35
2252 4847 6.582264 GCTCGAAATATTCTCGGTATTTGTC 58.418 40.000 15.30 0.00 36.93 3.18
2253 4848 5.175126 CGCTCGAAATATTCTCGGTATTTGT 59.825 40.000 15.30 0.00 36.93 2.83
2254 4849 5.401376 TCGCTCGAAATATTCTCGGTATTTG 59.599 40.000 15.30 5.51 36.93 2.32
2255 4850 5.526115 TCGCTCGAAATATTCTCGGTATTT 58.474 37.500 15.30 0.00 36.93 1.40
2256 4851 5.117355 TCGCTCGAAATATTCTCGGTATT 57.883 39.130 15.30 0.00 36.93 1.89
2257 4852 4.761235 TCGCTCGAAATATTCTCGGTAT 57.239 40.909 15.30 0.00 36.93 2.73
2258 4853 4.556942 TTCGCTCGAAATATTCTCGGTA 57.443 40.909 15.30 2.71 36.93 4.02
2259 4854 3.431922 TTCGCTCGAAATATTCTCGGT 57.568 42.857 15.30 0.00 36.93 4.69
2260 4855 4.974103 AATTCGCTCGAAATATTCTCGG 57.026 40.909 8.84 9.94 37.69 4.63
2261 4856 9.663491 CTATAAAATTCGCTCGAAATATTCTCG 57.337 33.333 8.84 11.44 37.69 4.04
2269 4864 9.834628 AAATTCAACTATAAAATTCGCTCGAAA 57.165 25.926 8.84 0.00 37.69 3.46
2270 4865 9.834628 AAAATTCAACTATAAAATTCGCTCGAA 57.165 25.926 7.19 7.19 38.59 3.71
2271 4866 9.272901 CAAAATTCAACTATAAAATTCGCTCGA 57.727 29.630 0.00 0.00 0.00 4.04
2272 4867 9.272901 TCAAAATTCAACTATAAAATTCGCTCG 57.727 29.630 0.00 0.00 0.00 5.03
2307 4902 9.410556 CTGGTTTGAATATTCGTTCATTTTCTT 57.589 29.630 10.80 0.00 37.88 2.52
2308 4903 8.792633 TCTGGTTTGAATATTCGTTCATTTTCT 58.207 29.630 10.80 0.00 37.88 2.52
2309 4904 8.964420 TCTGGTTTGAATATTCGTTCATTTTC 57.036 30.769 10.80 0.00 37.88 2.29
2310 4905 8.792633 TCTCTGGTTTGAATATTCGTTCATTTT 58.207 29.630 10.80 0.00 37.88 1.82
2311 4906 8.237267 GTCTCTGGTTTGAATATTCGTTCATTT 58.763 33.333 10.80 0.00 37.88 2.32
2312 4907 7.148239 GGTCTCTGGTTTGAATATTCGTTCATT 60.148 37.037 10.80 0.00 37.88 2.57
2313 4908 6.316390 GGTCTCTGGTTTGAATATTCGTTCAT 59.684 38.462 10.80 0.00 37.88 2.57
2314 4909 5.642063 GGTCTCTGGTTTGAATATTCGTTCA 59.358 40.000 10.80 5.87 36.38 3.18
2315 4910 5.875359 AGGTCTCTGGTTTGAATATTCGTTC 59.125 40.000 10.80 3.54 0.00 3.95
2316 4911 5.805728 AGGTCTCTGGTTTGAATATTCGTT 58.194 37.500 10.80 0.00 0.00 3.85
2317 4912 5.187967 AGAGGTCTCTGGTTTGAATATTCGT 59.812 40.000 10.80 0.00 38.75 3.85
2318 4913 5.665459 AGAGGTCTCTGGTTTGAATATTCG 58.335 41.667 10.80 0.00 38.75 3.34
2319 4914 6.644347 TGAGAGGTCTCTGGTTTGAATATTC 58.356 40.000 8.60 8.60 43.25 1.75
2320 4915 6.627087 TGAGAGGTCTCTGGTTTGAATATT 57.373 37.500 5.09 0.00 43.25 1.28
2321 4916 6.627087 TTGAGAGGTCTCTGGTTTGAATAT 57.373 37.500 5.09 0.00 43.25 1.28
2322 4917 6.433847 TTTGAGAGGTCTCTGGTTTGAATA 57.566 37.500 5.09 0.00 43.25 1.75
2323 4918 4.982241 TTGAGAGGTCTCTGGTTTGAAT 57.018 40.909 5.09 0.00 43.25 2.57
2324 4919 4.771114 TTTGAGAGGTCTCTGGTTTGAA 57.229 40.909 5.09 0.00 43.25 2.69
2325 4920 4.080582 TGTTTTGAGAGGTCTCTGGTTTGA 60.081 41.667 5.09 0.00 43.25 2.69
2326 4921 4.199310 TGTTTTGAGAGGTCTCTGGTTTG 58.801 43.478 5.09 0.00 43.25 2.93
2327 4922 4.455606 CTGTTTTGAGAGGTCTCTGGTTT 58.544 43.478 5.09 0.00 43.25 3.27
2328 4923 3.181450 CCTGTTTTGAGAGGTCTCTGGTT 60.181 47.826 5.09 0.00 43.25 3.67
2329 4924 2.370189 CCTGTTTTGAGAGGTCTCTGGT 59.630 50.000 5.09 0.00 43.25 4.00
2330 4925 2.634940 TCCTGTTTTGAGAGGTCTCTGG 59.365 50.000 5.09 0.00 43.25 3.86
2331 4926 4.061596 GTTCCTGTTTTGAGAGGTCTCTG 58.938 47.826 5.09 0.00 43.25 3.35
2332 4927 3.970640 AGTTCCTGTTTTGAGAGGTCTCT 59.029 43.478 8.44 0.00 43.25 3.10
2333 4928 4.344359 AGTTCCTGTTTTGAGAGGTCTC 57.656 45.455 0.00 0.00 43.15 3.36
2334 4929 4.284746 CCTAGTTCCTGTTTTGAGAGGTCT 59.715 45.833 0.00 0.00 0.00 3.85
2335 4930 4.040584 ACCTAGTTCCTGTTTTGAGAGGTC 59.959 45.833 0.00 0.00 28.54 3.85
2336 4931 3.974642 ACCTAGTTCCTGTTTTGAGAGGT 59.025 43.478 0.00 0.00 0.00 3.85
2337 4932 4.625607 ACCTAGTTCCTGTTTTGAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
2338 4933 4.214332 GCAACCTAGTTCCTGTTTTGAGAG 59.786 45.833 0.00 0.00 0.00 3.20
2339 4934 4.134563 GCAACCTAGTTCCTGTTTTGAGA 58.865 43.478 0.00 0.00 0.00 3.27
2340 4935 4.137543 AGCAACCTAGTTCCTGTTTTGAG 58.862 43.478 0.00 0.00 0.00 3.02
2341 4936 4.164843 AGCAACCTAGTTCCTGTTTTGA 57.835 40.909 0.00 0.00 0.00 2.69
2342 4937 4.215613 GGTAGCAACCTAGTTCCTGTTTTG 59.784 45.833 0.00 0.00 43.08 2.44
2343 4938 4.141344 TGGTAGCAACCTAGTTCCTGTTTT 60.141 41.667 0.00 0.00 46.91 2.43
2344 4939 3.393278 TGGTAGCAACCTAGTTCCTGTTT 59.607 43.478 0.00 0.00 46.91 2.83
2345 4940 2.976882 TGGTAGCAACCTAGTTCCTGTT 59.023 45.455 0.00 0.00 46.91 3.16
2346 4941 2.616524 TGGTAGCAACCTAGTTCCTGT 58.383 47.619 0.00 0.00 46.91 4.00
2347 4942 3.244422 TGTTGGTAGCAACCTAGTTCCTG 60.244 47.826 29.46 0.00 46.91 3.86
2348 4943 2.976882 TGTTGGTAGCAACCTAGTTCCT 59.023 45.455 29.46 0.00 46.91 3.36
2349 4944 3.412237 TGTTGGTAGCAACCTAGTTCC 57.588 47.619 29.46 7.82 46.91 3.62
2350 4945 3.127030 GCATGTTGGTAGCAACCTAGTTC 59.873 47.826 29.46 12.55 46.91 3.01
2351 4946 3.081804 GCATGTTGGTAGCAACCTAGTT 58.918 45.455 29.46 10.75 46.91 2.24
2352 4947 2.618045 GGCATGTTGGTAGCAACCTAGT 60.618 50.000 29.46 13.78 46.91 2.57
2353 4948 2.017049 GGCATGTTGGTAGCAACCTAG 58.983 52.381 29.46 20.86 46.91 3.02
2354 4949 1.352687 TGGCATGTTGGTAGCAACCTA 59.647 47.619 29.46 16.07 46.91 3.08
2355 4950 0.112218 TGGCATGTTGGTAGCAACCT 59.888 50.000 29.46 20.04 46.91 3.50
2356 4951 1.185315 ATGGCATGTTGGTAGCAACC 58.815 50.000 29.46 17.64 46.98 3.77
2357 4952 3.428862 GGTTATGGCATGTTGGTAGCAAC 60.429 47.826 26.90 26.90 35.75 4.17
2358 4953 2.757868 GGTTATGGCATGTTGGTAGCAA 59.242 45.455 10.98 2.54 0.00 3.91
2359 4954 2.291217 TGGTTATGGCATGTTGGTAGCA 60.291 45.455 10.98 0.00 0.00 3.49
2360 4955 2.374184 TGGTTATGGCATGTTGGTAGC 58.626 47.619 10.98 0.00 0.00 3.58
2361 4956 4.016444 AGTTGGTTATGGCATGTTGGTAG 58.984 43.478 10.98 0.00 0.00 3.18
2362 4957 4.040936 AGTTGGTTATGGCATGTTGGTA 57.959 40.909 10.98 0.00 0.00 3.25
2363 4958 2.888212 AGTTGGTTATGGCATGTTGGT 58.112 42.857 10.98 0.00 0.00 3.67
2364 4959 3.959535 AAGTTGGTTATGGCATGTTGG 57.040 42.857 10.98 0.00 0.00 3.77
2365 4960 4.880759 TGAAAGTTGGTTATGGCATGTTG 58.119 39.130 10.98 0.00 0.00 3.33
2366 4961 5.743636 ATGAAAGTTGGTTATGGCATGTT 57.256 34.783 10.98 0.00 0.00 2.71
2367 4962 5.481105 CAATGAAAGTTGGTTATGGCATGT 58.519 37.500 10.98 0.00 0.00 3.21
2368 4963 4.330620 GCAATGAAAGTTGGTTATGGCATG 59.669 41.667 10.98 0.00 0.00 4.06
2369 4964 4.020396 TGCAATGAAAGTTGGTTATGGCAT 60.020 37.500 4.88 4.88 0.00 4.40
2370 4965 3.323115 TGCAATGAAAGTTGGTTATGGCA 59.677 39.130 0.00 0.00 0.00 4.92
2371 4966 3.924144 TGCAATGAAAGTTGGTTATGGC 58.076 40.909 0.00 0.00 0.00 4.40
2372 4967 8.721019 ATTAATGCAATGAAAGTTGGTTATGG 57.279 30.769 0.00 0.00 0.00 2.74
2376 4971 9.423061 GTCTAATTAATGCAATGAAAGTTGGTT 57.577 29.630 0.00 0.00 0.00 3.67
2377 4972 8.034804 GGTCTAATTAATGCAATGAAAGTTGGT 58.965 33.333 0.00 0.00 0.00 3.67
2378 4973 7.492344 GGGTCTAATTAATGCAATGAAAGTTGG 59.508 37.037 0.00 0.00 0.00 3.77
2379 4974 8.253113 AGGGTCTAATTAATGCAATGAAAGTTG 58.747 33.333 0.00 0.00 0.00 3.16
2380 4975 8.366359 AGGGTCTAATTAATGCAATGAAAGTT 57.634 30.769 0.00 0.00 0.00 2.66
2381 4976 7.961326 AGGGTCTAATTAATGCAATGAAAGT 57.039 32.000 0.00 0.00 0.00 2.66
2382 4977 8.902806 TGTAGGGTCTAATTAATGCAATGAAAG 58.097 33.333 0.00 0.00 0.00 2.62
2383 4978 8.815565 TGTAGGGTCTAATTAATGCAATGAAA 57.184 30.769 0.00 0.00 0.00 2.69
2384 4979 8.995027 ATGTAGGGTCTAATTAATGCAATGAA 57.005 30.769 0.00 0.00 0.00 2.57
2385 4980 9.502091 GTATGTAGGGTCTAATTAATGCAATGA 57.498 33.333 0.00 0.00 0.00 2.57
2386 4981 8.730680 GGTATGTAGGGTCTAATTAATGCAATG 58.269 37.037 0.00 0.00 0.00 2.82
2387 4982 8.669571 AGGTATGTAGGGTCTAATTAATGCAAT 58.330 33.333 0.00 0.00 0.00 3.56
2388 4983 8.041143 AGGTATGTAGGGTCTAATTAATGCAA 57.959 34.615 0.00 0.00 0.00 4.08
2389 4984 7.626999 AGGTATGTAGGGTCTAATTAATGCA 57.373 36.000 0.00 0.00 0.00 3.96
2390 4985 9.433153 GTAAGGTATGTAGGGTCTAATTAATGC 57.567 37.037 0.00 0.00 0.00 3.56
2393 4988 9.719433 ACAGTAAGGTATGTAGGGTCTAATTAA 57.281 33.333 0.00 0.00 0.00 1.40
2395 4990 9.719433 TTACAGTAAGGTATGTAGGGTCTAATT 57.281 33.333 0.00 0.00 33.66 1.40
2396 4991 9.719433 TTTACAGTAAGGTATGTAGGGTCTAAT 57.281 33.333 0.00 0.00 33.66 1.73
2397 4992 9.719433 ATTTACAGTAAGGTATGTAGGGTCTAA 57.281 33.333 0.00 0.00 33.66 2.10
2398 4993 9.359653 GATTTACAGTAAGGTATGTAGGGTCTA 57.640 37.037 0.00 0.00 33.66 2.59
2399 4994 7.014038 CGATTTACAGTAAGGTATGTAGGGTCT 59.986 40.741 0.00 0.00 33.66 3.85
2400 4995 7.013655 TCGATTTACAGTAAGGTATGTAGGGTC 59.986 40.741 0.00 0.00 33.66 4.46
2401 4996 6.835488 TCGATTTACAGTAAGGTATGTAGGGT 59.165 38.462 0.00 0.00 33.66 4.34
2402 4997 7.014038 ACTCGATTTACAGTAAGGTATGTAGGG 59.986 40.741 0.00 0.00 33.66 3.53
2403 4998 7.861372 CACTCGATTTACAGTAAGGTATGTAGG 59.139 40.741 0.00 0.00 33.66 3.18
2404 4999 8.404000 ACACTCGATTTACAGTAAGGTATGTAG 58.596 37.037 0.00 0.00 33.66 2.74
2405 5000 8.284945 ACACTCGATTTACAGTAAGGTATGTA 57.715 34.615 0.00 0.00 0.00 2.29
2406 5001 7.166691 ACACTCGATTTACAGTAAGGTATGT 57.833 36.000 0.00 0.00 0.00 2.29
2407 5002 8.475331 AAACACTCGATTTACAGTAAGGTATG 57.525 34.615 0.00 0.00 0.00 2.39
2409 5004 9.979578 TTTAAACACTCGATTTACAGTAAGGTA 57.020 29.630 0.00 0.00 0.00 3.08
2410 5005 8.891671 TTTAAACACTCGATTTACAGTAAGGT 57.108 30.769 0.00 0.00 0.00 3.50
2461 5056 5.163834 GGTAAATCGTCATACCGAGCAAAAA 60.164 40.000 0.00 0.00 40.68 1.94
2462 5057 4.330620 GGTAAATCGTCATACCGAGCAAAA 59.669 41.667 0.00 0.00 40.68 2.44
2463 5058 3.866910 GGTAAATCGTCATACCGAGCAAA 59.133 43.478 0.00 0.00 40.68 3.68
2464 5059 3.450578 GGTAAATCGTCATACCGAGCAA 58.549 45.455 0.00 0.00 40.68 3.91
2465 5060 3.088194 GGTAAATCGTCATACCGAGCA 57.912 47.619 0.00 0.00 40.68 4.26
2470 5065 2.288640 CCCCTCGGTAAATCGTCATACC 60.289 54.545 0.00 0.00 38.55 2.73
2471 5066 2.865276 GCCCCTCGGTAAATCGTCATAC 60.865 54.545 0.00 0.00 0.00 2.39
2472 5067 1.342174 GCCCCTCGGTAAATCGTCATA 59.658 52.381 0.00 0.00 0.00 2.15
2473 5068 0.106149 GCCCCTCGGTAAATCGTCAT 59.894 55.000 0.00 0.00 0.00 3.06
2474 5069 1.259142 TGCCCCTCGGTAAATCGTCA 61.259 55.000 0.00 0.00 0.00 4.35
2475 5070 0.808847 GTGCCCCTCGGTAAATCGTC 60.809 60.000 0.00 0.00 0.00 4.20
2476 5071 1.219935 GTGCCCCTCGGTAAATCGT 59.780 57.895 0.00 0.00 0.00 3.73
2477 5072 1.881252 CGTGCCCCTCGGTAAATCG 60.881 63.158 0.00 0.00 0.00 3.34
2478 5073 1.523032 CCGTGCCCCTCGGTAAATC 60.523 63.158 0.00 0.00 42.62 2.17
2479 5074 1.555477 TTCCGTGCCCCTCGGTAAAT 61.555 55.000 4.36 0.00 46.86 1.40
2480 5075 1.766625 TTTCCGTGCCCCTCGGTAAA 61.767 55.000 4.36 2.21 46.86 2.01
2481 5076 1.555477 ATTTCCGTGCCCCTCGGTAA 61.555 55.000 4.36 1.98 46.86 2.85
2482 5077 0.687098 TATTTCCGTGCCCCTCGGTA 60.687 55.000 4.36 0.00 46.86 4.02
2483 5078 1.991167 TATTTCCGTGCCCCTCGGT 60.991 57.895 4.36 0.00 46.86 4.69
2485 5080 1.881252 CGTATTTCCGTGCCCCTCG 60.881 63.158 0.00 0.00 0.00 4.63
2486 5081 1.219935 ACGTATTTCCGTGCCCCTC 59.780 57.895 0.00 0.00 40.08 4.30
2487 5082 3.395630 ACGTATTTCCGTGCCCCT 58.604 55.556 0.00 0.00 40.08 4.79
2493 5088 3.264104 CATGGTTACCACGTATTTCCGT 58.736 45.455 6.10 0.00 42.87 4.69
2494 5089 2.610374 CCATGGTTACCACGTATTTCCG 59.390 50.000 6.10 0.00 35.80 4.30
2495 5090 2.946990 CCCATGGTTACCACGTATTTCC 59.053 50.000 6.10 0.00 35.80 3.13
2496 5091 3.876341 TCCCATGGTTACCACGTATTTC 58.124 45.455 6.10 0.00 35.80 2.17
2497 5092 4.304048 TTCCCATGGTTACCACGTATTT 57.696 40.909 6.10 0.00 35.80 1.40
2498 5093 4.304048 TTTCCCATGGTTACCACGTATT 57.696 40.909 6.10 0.00 35.80 1.89
2499 5094 4.165372 AGATTTCCCATGGTTACCACGTAT 59.835 41.667 6.10 0.00 35.80 3.06
2500 5095 3.520317 AGATTTCCCATGGTTACCACGTA 59.480 43.478 6.10 0.00 35.80 3.57
2501 5096 2.307686 AGATTTCCCATGGTTACCACGT 59.692 45.455 6.10 0.00 35.80 4.49
2502 5097 2.999331 AGATTTCCCATGGTTACCACG 58.001 47.619 6.10 0.00 35.80 4.94
2503 5098 4.340617 TCAAGATTTCCCATGGTTACCAC 58.659 43.478 6.10 0.00 35.80 4.16
2504 5099 4.666412 TCAAGATTTCCCATGGTTACCA 57.334 40.909 6.53 6.53 38.19 3.25
2505 5100 5.993748 TTTCAAGATTTCCCATGGTTACC 57.006 39.130 11.73 0.00 0.00 2.85
2506 5101 7.275560 CGAAATTTCAAGATTTCCCATGGTTAC 59.724 37.037 17.99 0.00 41.02 2.50
2507 5102 7.177568 TCGAAATTTCAAGATTTCCCATGGTTA 59.822 33.333 17.99 0.00 41.02 2.85
2508 5103 6.014669 TCGAAATTTCAAGATTTCCCATGGTT 60.015 34.615 17.99 0.00 41.02 3.67
2509 5104 5.480073 TCGAAATTTCAAGATTTCCCATGGT 59.520 36.000 17.99 0.00 41.02 3.55
2510 5105 5.807011 GTCGAAATTTCAAGATTTCCCATGG 59.193 40.000 17.99 4.14 41.02 3.66
2511 5106 6.529125 CAGTCGAAATTTCAAGATTTCCCATG 59.471 38.462 17.99 0.00 41.02 3.66
2512 5107 6.350445 CCAGTCGAAATTTCAAGATTTCCCAT 60.350 38.462 17.99 0.00 41.02 4.00
2513 5108 5.048083 CCAGTCGAAATTTCAAGATTTCCCA 60.048 40.000 17.99 0.00 41.02 4.37
2514 5109 5.048013 ACCAGTCGAAATTTCAAGATTTCCC 60.048 40.000 17.99 0.00 41.02 3.97
2515 5110 6.013842 ACCAGTCGAAATTTCAAGATTTCC 57.986 37.500 17.99 0.00 41.02 3.13
2516 5111 7.537649 GGTTACCAGTCGAAATTTCAAGATTTC 59.462 37.037 17.99 0.00 40.80 2.17
2517 5112 7.013846 TGGTTACCAGTCGAAATTTCAAGATTT 59.986 33.333 17.99 0.99 32.16 2.17
2518 5113 6.488683 TGGTTACCAGTCGAAATTTCAAGATT 59.511 34.615 17.99 2.59 0.00 2.40
2519 5114 6.001460 TGGTTACCAGTCGAAATTTCAAGAT 58.999 36.000 17.99 1.22 0.00 2.40
2520 5115 5.369833 TGGTTACCAGTCGAAATTTCAAGA 58.630 37.500 17.99 5.43 0.00 3.02
2521 5116 5.682943 TGGTTACCAGTCGAAATTTCAAG 57.317 39.130 17.99 3.07 0.00 3.02
2522 5117 6.452494 TTTGGTTACCAGTCGAAATTTCAA 57.548 33.333 17.99 0.00 33.81 2.69
2523 5118 6.267070 GTTTTGGTTACCAGTCGAAATTTCA 58.733 36.000 17.99 2.95 33.81 2.69
2524 5119 5.688621 GGTTTTGGTTACCAGTCGAAATTTC 59.311 40.000 3.65 8.20 33.81 2.17
2525 5120 5.361571 AGGTTTTGGTTACCAGTCGAAATTT 59.638 36.000 3.65 0.00 38.16 1.82
2526 5121 4.891168 AGGTTTTGGTTACCAGTCGAAATT 59.109 37.500 3.65 0.00 38.16 1.82
2527 5122 4.466827 AGGTTTTGGTTACCAGTCGAAAT 58.533 39.130 3.65 0.00 38.16 2.17
2528 5123 3.888583 AGGTTTTGGTTACCAGTCGAAA 58.111 40.909 3.65 0.00 38.16 3.46
2529 5124 3.564053 AGGTTTTGGTTACCAGTCGAA 57.436 42.857 3.65 0.00 38.16 3.71
2530 5125 3.207778 CAAGGTTTTGGTTACCAGTCGA 58.792 45.455 3.65 0.00 38.16 4.20
2531 5126 3.619233 CAAGGTTTTGGTTACCAGTCG 57.381 47.619 3.65 0.00 38.16 4.18
2542 5137 3.857010 GCCGTCTTCAATCCAAGGTTTTG 60.857 47.826 0.00 0.00 0.00 2.44
2543 5138 2.296190 GCCGTCTTCAATCCAAGGTTTT 59.704 45.455 0.00 0.00 0.00 2.43
2544 5139 1.886542 GCCGTCTTCAATCCAAGGTTT 59.113 47.619 0.00 0.00 0.00 3.27
2545 5140 1.534729 GCCGTCTTCAATCCAAGGTT 58.465 50.000 0.00 0.00 0.00 3.50
2546 5141 0.673644 CGCCGTCTTCAATCCAAGGT 60.674 55.000 0.00 0.00 0.00 3.50
2547 5142 1.369091 CCGCCGTCTTCAATCCAAGG 61.369 60.000 0.00 0.00 0.00 3.61
2548 5143 1.982073 GCCGCCGTCTTCAATCCAAG 61.982 60.000 0.00 0.00 0.00 3.61
2549 5144 2.038269 GCCGCCGTCTTCAATCCAA 61.038 57.895 0.00 0.00 0.00 3.53
2550 5145 2.435938 GCCGCCGTCTTCAATCCA 60.436 61.111 0.00 0.00 0.00 3.41
2551 5146 3.564027 CGCCGCCGTCTTCAATCC 61.564 66.667 0.00 0.00 0.00 3.01
2552 5147 2.508439 TCGCCGCCGTCTTCAATC 60.508 61.111 0.00 0.00 35.54 2.67
2625 5220 2.289945 GGAATCCGAGCCAGCTATCAAT 60.290 50.000 0.00 0.00 0.00 2.57
2642 5237 1.595357 GAGGTCGTGGAACCGGAAT 59.405 57.895 9.46 0.00 44.49 3.01
2915 5524 1.879380 TGCAGTTAAGCACGCAAGAAT 59.121 42.857 0.00 0.00 40.11 2.40
2917 5526 2.999356 TGCAGTTAAGCACGCAAGA 58.001 47.368 0.00 0.00 40.11 3.02
3033 5658 1.112315 TTTTGGAGGCGCAACACCAT 61.112 50.000 10.83 0.00 32.31 3.55
3036 5661 2.715737 TATTTTTGGAGGCGCAACAC 57.284 45.000 10.83 0.00 0.00 3.32
3039 5664 4.527509 TTCATTATTTTTGGAGGCGCAA 57.472 36.364 10.83 0.00 0.00 4.85
3135 5771 9.575783 CATCACATCAACACATCATAATTCAAA 57.424 29.630 0.00 0.00 0.00 2.69
3136 5772 8.192110 CCATCACATCAACACATCATAATTCAA 58.808 33.333 0.00 0.00 0.00 2.69
3137 5773 7.339976 ACCATCACATCAACACATCATAATTCA 59.660 33.333 0.00 0.00 0.00 2.57
3138 5774 7.646526 CACCATCACATCAACACATCATAATTC 59.353 37.037 0.00 0.00 0.00 2.17
3139 5775 7.123098 ACACCATCACATCAACACATCATAATT 59.877 33.333 0.00 0.00 0.00 1.40
3143 5779 4.157105 CACACCATCACATCAACACATCAT 59.843 41.667 0.00 0.00 0.00 2.45
3190 5826 5.046735 GCCCTTCTATCTATGCTTCTGATGA 60.047 44.000 0.00 0.00 0.00 2.92
3219 5855 5.300286 GGTTGTAATGAATGCTCTGCCTATT 59.700 40.000 0.00 0.00 0.00 1.73
3227 5863 4.035675 GTGGCTAGGTTGTAATGAATGCTC 59.964 45.833 0.00 0.00 0.00 4.26
3231 5867 3.541632 CCGTGGCTAGGTTGTAATGAAT 58.458 45.455 0.00 0.00 0.00 2.57
3234 5870 1.014352 GCCGTGGCTAGGTTGTAATG 58.986 55.000 2.98 0.00 38.26 1.90
3235 5871 3.471354 GCCGTGGCTAGGTTGTAAT 57.529 52.632 2.98 0.00 38.26 1.89
3257 5893 3.760684 ACATGTGGATCTTCTTGGCTTTC 59.239 43.478 0.00 0.00 0.00 2.62
3279 5915 1.327690 GGGTAGTGGCGAGTGATCCA 61.328 60.000 0.00 0.00 0.00 3.41
3296 5932 3.202906 CATGTACGGTCAATAGGTTGGG 58.797 50.000 0.00 0.00 35.99 4.12
3306 5942 1.763968 CTCTCTCCCATGTACGGTCA 58.236 55.000 0.00 0.00 0.00 4.02
3307 5943 0.386113 GCTCTCTCCCATGTACGGTC 59.614 60.000 0.00 0.00 0.00 4.79
3336 5972 2.674033 GGGCCGCGGGTTTACTTT 60.674 61.111 29.38 0.00 0.00 2.66
3360 5996 2.840651 AGGATCGAGTTTGAGGGTCAAT 59.159 45.455 0.00 0.00 36.11 2.57
3361 5997 2.233922 GAGGATCGAGTTTGAGGGTCAA 59.766 50.000 0.00 0.00 34.03 3.18
3447 6083 1.079197 ACGCTTGTCGCATGGATGA 60.079 52.632 0.00 0.00 43.23 2.92
3457 6093 2.279918 ACCGTGGTGACGCTTGTC 60.280 61.111 0.00 0.00 44.68 3.18
3460 6096 2.879233 ATGGACCGTGGTGACGCTT 61.879 57.895 0.00 0.00 44.68 4.68
3463 6099 1.736645 GACATGGACCGTGGTGACG 60.737 63.158 18.07 0.00 45.67 4.35
3472 6108 4.938226 CAGTTAAGGAAAGAGACATGGACC 59.062 45.833 0.00 0.00 0.00 4.46
3484 6120 2.151202 CCGCAGAAGCAGTTAAGGAAA 58.849 47.619 0.00 0.00 42.27 3.13
3492 6128 3.602513 CTCAGCCCGCAGAAGCAGT 62.603 63.158 0.00 0.00 42.27 4.40
3493 6129 2.818714 CTCAGCCCGCAGAAGCAG 60.819 66.667 0.00 0.00 42.27 4.24
3496 6132 0.530211 CATCTCTCAGCCCGCAGAAG 60.530 60.000 0.00 0.00 0.00 2.85
3544 6180 0.331616 AACCTACCTGGATGCCAACC 59.668 55.000 0.00 0.00 39.71 3.77
3545 6181 2.215942 AAACCTACCTGGATGCCAAC 57.784 50.000 0.00 0.00 39.71 3.77
3575 6211 0.877071 GTGTGAACCAGCATCACCAG 59.123 55.000 4.40 0.00 45.19 4.00
3589 6225 2.661537 CCAGCGCGACAAGTGTGA 60.662 61.111 12.10 0.00 0.00 3.58
3619 6255 6.946340 TCAGGAAACTATTGATCACTTGCTA 58.054 36.000 0.00 0.00 40.21 3.49
3631 6267 3.600388 CGACCAAGCTCAGGAAACTATT 58.400 45.455 11.80 0.00 40.21 1.73
3634 6270 0.603975 GCGACCAAGCTCAGGAAACT 60.604 55.000 11.80 0.00 46.44 2.66
3649 6285 0.798009 CGACATGCCCATTTTGCGAC 60.798 55.000 0.00 0.00 0.00 5.19
3652 6288 1.632422 CTTCGACATGCCCATTTTGC 58.368 50.000 0.00 0.00 0.00 3.68
3676 6312 0.473755 TGCAAAGAAGACAGCTCCCA 59.526 50.000 0.00 0.00 0.00 4.37
3679 6315 5.276773 CGATAGATTGCAAAGAAGACAGCTC 60.277 44.000 1.71 0.00 39.76 4.09
3685 6321 3.206150 GGCCGATAGATTGCAAAGAAGA 58.794 45.455 1.71 0.00 39.76 2.87
3696 6332 1.000955 GATGTTGGACGGCCGATAGAT 59.999 52.381 35.90 16.70 36.79 1.98
3728 6364 1.410153 CAAGTTCTTTGCTTGGCTGGT 59.590 47.619 0.00 0.00 39.53 4.00
3775 6411 2.367567 GTTCCCCATCACCGCTTAGATA 59.632 50.000 0.00 0.00 0.00 1.98
3780 6416 2.046314 CGTTCCCCATCACCGCTT 60.046 61.111 0.00 0.00 0.00 4.68
3783 6419 2.686816 GCAACGTTCCCCATCACCG 61.687 63.158 0.00 0.00 0.00 4.94
3786 6422 0.109532 TTCTGCAACGTTCCCCATCA 59.890 50.000 0.00 0.00 0.00 3.07
3787 6423 1.243902 TTTCTGCAACGTTCCCCATC 58.756 50.000 0.00 0.00 0.00 3.51
3788 6424 1.698506 TTTTCTGCAACGTTCCCCAT 58.301 45.000 0.00 0.00 0.00 4.00
3789 6425 1.698506 ATTTTCTGCAACGTTCCCCA 58.301 45.000 0.00 0.00 0.00 4.96
3790 6426 3.926821 TTATTTTCTGCAACGTTCCCC 57.073 42.857 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.