Multiple sequence alignment - TraesCS1B01G107100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G107100 chr1B 100.000 6467 0 0 1 6467 119104772 119098306 0.000000e+00 11943.0
1 TraesCS1B01G107100 chr1D 95.528 5568 180 35 937 6467 75660180 75654645 0.000000e+00 8839.0
2 TraesCS1B01G107100 chr1D 87.067 549 19 19 384 915 75660691 75660178 2.020000e-159 573.0
3 TraesCS1B01G107100 chr1D 84.146 82 7 3 5808 5884 25973741 25973661 2.500000e-09 75.0
4 TraesCS1B01G107100 chr1A 95.691 2901 88 23 1131 4006 76491911 76489023 0.000000e+00 4630.0
5 TraesCS1B01G107100 chr1A 95.919 1887 52 9 4020 5888 76487671 76485792 0.000000e+00 3035.0
6 TraesCS1B01G107100 chr1A 84.992 593 45 11 5880 6467 76485662 76485109 4.380000e-156 562.0
7 TraesCS1B01G107100 chr1A 91.538 390 9 7 405 779 76493258 76492878 3.460000e-142 516.0
8 TraesCS1B01G107100 chr1A 92.790 319 16 2 815 1127 76492268 76491951 7.640000e-124 455.0
9 TraesCS1B01G107100 chr1A 82.955 176 25 4 5899 6072 49148722 49148550 3.120000e-33 154.0
10 TraesCS1B01G107100 chr2B 88.701 177 16 2 5899 6072 780869870 780870045 5.080000e-51 213.0
11 TraesCS1B01G107100 chr2B 89.062 64 6 1 5821 5883 780870032 780869969 1.930000e-10 78.7
12 TraesCS1B01G107100 chr4D 85.876 177 20 3 5891 6062 369117548 369117372 3.980000e-42 183.0
13 TraesCS1B01G107100 chr4D 83.243 185 26 3 5891 6071 449913646 449913829 1.440000e-36 165.0
14 TraesCS1B01G107100 chr3B 86.503 163 17 4 5903 6062 105471614 105471774 2.400000e-39 174.0
15 TraesCS1B01G107100 chr3B 92.647 68 5 0 5808 5875 177915803 177915736 1.480000e-16 99.0
16 TraesCS1B01G107100 chr7A 83.721 172 21 4 5900 6066 546511261 546511430 8.680000e-34 156.0
17 TraesCS1B01G107100 chr2D 82.955 176 25 3 5900 6072 302262401 302262228 3.120000e-33 154.0
18 TraesCS1B01G107100 chr2D 88.710 62 6 1 5823 5883 302262243 302262304 2.500000e-09 75.0
19 TraesCS1B01G107100 chr7D 90.625 64 5 1 5821 5883 227402400 227402337 4.160000e-12 84.2
20 TraesCS1B01G107100 chr7D 86.111 72 10 0 5810 5881 89218164 89218093 1.930000e-10 78.7
21 TraesCS1B01G107100 chr5D 87.143 70 5 4 5807 5875 538668688 538668754 6.950000e-10 76.8
22 TraesCS1B01G107100 chr7B 85.714 70 10 0 6 75 76897663 76897594 2.500000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G107100 chr1B 119098306 119104772 6466 True 11943.0 11943 100.0000 1 6467 1 chr1B.!!$R1 6466
1 TraesCS1B01G107100 chr1D 75654645 75660691 6046 True 4706.0 8839 91.2975 384 6467 2 chr1D.!!$R2 6083
2 TraesCS1B01G107100 chr1A 76485109 76493258 8149 True 1839.6 4630 92.1860 405 6467 5 chr1A.!!$R2 6062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.029035 ATGTCTCGTCGTCCGTATGC 59.971 55.000 0.0 0.0 37.94 3.14 F
1304 1953 0.038435 TGGGTGCAAATGTGAATGCG 60.038 50.000 0.0 0.0 45.47 4.73 F
1325 1974 0.905357 ATCGGCCTGGTATAGATGCC 59.095 55.000 0.0 0.0 38.74 4.40 F
1538 2205 1.338674 TGACACGACCATAGCCCAAAG 60.339 52.381 0.0 0.0 0.00 2.77 F
2488 3157 2.095263 CAGTTGGGCAGTGATTTTACCG 60.095 50.000 0.0 0.0 0.00 4.02 F
2597 3266 3.134081 GCTTTGGTATGGTGTAGCCTAGA 59.866 47.826 0.0 0.0 38.35 2.43 F
3834 4509 4.077108 GTTTGGTTTTACCCTACAGGAGG 58.923 47.826 0.0 0.0 46.25 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 2188 0.035439 ACCTTTGGGCTATGGTCGTG 60.035 55.000 0.0 0.00 35.63 4.35 R
3060 3730 1.725641 CTGCACACGGAGAAAGCATA 58.274 50.000 0.0 0.00 34.35 3.14 R
3069 3739 3.535629 CTCCAAGGCTGCACACGGA 62.536 63.158 0.5 0.49 0.00 4.69 R
3601 4273 6.197096 GCAAAGATTGATAAAGCATGTAACCG 59.803 38.462 0.0 0.00 0.00 4.44 R
3747 4419 0.606401 ACCTCGTGTTTCCATGCCAG 60.606 55.000 0.0 0.00 0.00 4.85 R
4016 6033 3.066342 ACATTTGCACAGAGATATGCTGC 59.934 43.478 0.0 0.00 36.86 5.25 R
5659 7694 0.917259 GCGCACACTCTTCGATACAG 59.083 55.000 0.3 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.185155 GGATGTCTCGTCGTCCGT 58.815 61.111 0.00 0.00 37.94 4.69
18 19 2.387309 GGATGTCTCGTCGTCCGTA 58.613 57.895 0.00 0.00 37.94 4.02
19 20 0.942962 GGATGTCTCGTCGTCCGTAT 59.057 55.000 0.00 0.00 37.94 3.06
20 21 1.333881 GGATGTCTCGTCGTCCGTATG 60.334 57.143 0.00 0.00 37.94 2.39
21 22 0.029035 ATGTCTCGTCGTCCGTATGC 59.971 55.000 0.00 0.00 37.94 3.14
22 23 1.300266 TGTCTCGTCGTCCGTATGCA 61.300 55.000 0.00 0.00 37.94 3.96
23 24 0.179181 GTCTCGTCGTCCGTATGCAA 60.179 55.000 0.00 0.00 37.94 4.08
24 25 0.179181 TCTCGTCGTCCGTATGCAAC 60.179 55.000 0.00 0.00 37.94 4.17
36 37 2.916111 GTATGCAACGGCGATATTTGG 58.084 47.619 16.62 0.00 45.35 3.28
37 38 1.388547 ATGCAACGGCGATATTTGGT 58.611 45.000 16.62 0.00 45.35 3.67
38 39 0.449786 TGCAACGGCGATATTTGGTG 59.550 50.000 16.62 0.00 45.35 4.17
39 40 0.730265 GCAACGGCGATATTTGGTGA 59.270 50.000 16.62 0.00 0.00 4.02
40 41 1.531058 GCAACGGCGATATTTGGTGAC 60.531 52.381 16.62 0.00 0.00 3.67
41 42 1.735018 CAACGGCGATATTTGGTGACA 59.265 47.619 16.62 0.00 39.83 3.58
55 56 3.138304 TGGTGACAAGTTCTTTGGATCG 58.862 45.455 0.00 0.00 41.25 3.69
56 57 3.181459 TGGTGACAAGTTCTTTGGATCGA 60.181 43.478 0.00 0.00 41.25 3.59
57 58 4.003648 GGTGACAAGTTCTTTGGATCGAT 58.996 43.478 0.00 0.00 41.25 3.59
58 59 4.455877 GGTGACAAGTTCTTTGGATCGATT 59.544 41.667 0.00 0.00 41.25 3.34
59 60 5.390991 GGTGACAAGTTCTTTGGATCGATTC 60.391 44.000 0.00 0.00 41.25 2.52
60 61 5.179368 GTGACAAGTTCTTTGGATCGATTCA 59.821 40.000 1.00 1.00 41.25 2.57
61 62 5.762711 TGACAAGTTCTTTGGATCGATTCAA 59.237 36.000 15.35 15.35 41.25 2.69
62 63 6.073058 TGACAAGTTCTTTGGATCGATTCAAG 60.073 38.462 18.31 12.87 41.25 3.02
63 64 5.182001 ACAAGTTCTTTGGATCGATTCAAGG 59.818 40.000 19.83 19.83 41.25 3.61
64 65 4.265073 AGTTCTTTGGATCGATTCAAGGG 58.735 43.478 23.94 17.86 0.00 3.95
65 66 4.010349 GTTCTTTGGATCGATTCAAGGGT 58.990 43.478 23.94 0.00 0.00 4.34
66 67 3.873910 TCTTTGGATCGATTCAAGGGTC 58.126 45.455 23.94 0.00 0.00 4.46
67 68 2.710096 TTGGATCGATTCAAGGGTCC 57.290 50.000 15.35 2.62 0.00 4.46
68 69 1.578897 TGGATCGATTCAAGGGTCCA 58.421 50.000 3.16 0.00 33.63 4.02
69 70 1.912731 TGGATCGATTCAAGGGTCCAA 59.087 47.619 3.16 0.00 33.15 3.53
70 71 2.289565 GGATCGATTCAAGGGTCCAAC 58.710 52.381 0.00 0.00 0.00 3.77
71 72 1.933853 GATCGATTCAAGGGTCCAACG 59.066 52.381 0.00 0.00 0.00 4.10
72 73 0.970640 TCGATTCAAGGGTCCAACGA 59.029 50.000 0.00 0.00 0.00 3.85
73 74 1.076332 CGATTCAAGGGTCCAACGAC 58.924 55.000 0.00 0.00 38.38 4.34
74 75 1.076332 GATTCAAGGGTCCAACGACG 58.924 55.000 0.00 0.00 40.17 5.12
75 76 0.682852 ATTCAAGGGTCCAACGACGA 59.317 50.000 0.00 0.00 40.17 4.20
76 77 0.464870 TTCAAGGGTCCAACGACGAA 59.535 50.000 0.00 0.00 40.17 3.85
77 78 0.464870 TCAAGGGTCCAACGACGAAA 59.535 50.000 0.00 0.00 40.17 3.46
78 79 0.865769 CAAGGGTCCAACGACGAAAG 59.134 55.000 0.00 0.00 40.17 2.62
89 90 4.043168 ACGAAAGTTGCGTCCCAG 57.957 55.556 2.07 0.00 46.40 4.45
90 91 1.145377 ACGAAAGTTGCGTCCCAGT 59.855 52.632 2.07 0.00 46.40 4.00
91 92 1.157870 ACGAAAGTTGCGTCCCAGTG 61.158 55.000 2.07 0.00 46.40 3.66
92 93 1.282875 GAAAGTTGCGTCCCAGTGC 59.717 57.895 0.00 0.00 0.00 4.40
93 94 2.443957 GAAAGTTGCGTCCCAGTGCG 62.444 60.000 0.00 0.00 0.00 5.34
99 100 2.887568 CGTCCCAGTGCGCTGATC 60.888 66.667 28.54 15.69 45.28 2.92
100 101 2.512515 GTCCCAGTGCGCTGATCC 60.513 66.667 28.54 11.11 45.28 3.36
101 102 2.685017 TCCCAGTGCGCTGATCCT 60.685 61.111 28.54 0.00 45.28 3.24
102 103 2.270205 CCCAGTGCGCTGATCCTT 59.730 61.111 28.54 0.00 45.28 3.36
103 104 2.110967 CCCAGTGCGCTGATCCTTG 61.111 63.158 28.54 10.23 45.28 3.61
104 105 1.078918 CCAGTGCGCTGATCCTTGA 60.079 57.895 28.54 0.00 45.28 3.02
105 106 1.088340 CCAGTGCGCTGATCCTTGAG 61.088 60.000 28.54 5.17 45.28 3.02
106 107 1.088340 CAGTGCGCTGATCCTTGAGG 61.088 60.000 22.94 0.00 45.28 3.86
107 108 2.124983 TGCGCTGATCCTTGAGGC 60.125 61.111 9.73 0.00 34.44 4.70
108 109 2.124983 GCGCTGATCCTTGAGGCA 60.125 61.111 0.00 0.00 34.44 4.75
109 110 1.746615 GCGCTGATCCTTGAGGCAA 60.747 57.895 0.00 0.00 34.44 4.52
110 111 1.986575 GCGCTGATCCTTGAGGCAAC 61.987 60.000 0.00 0.00 34.44 4.17
122 123 3.058160 GGCAACTGCACGATGGCT 61.058 61.111 3.76 0.00 44.36 4.75
123 124 2.629656 GGCAACTGCACGATGGCTT 61.630 57.895 3.76 0.00 44.36 4.35
124 125 1.154150 GCAACTGCACGATGGCTTC 60.154 57.895 0.00 0.00 41.59 3.86
125 126 1.503542 CAACTGCACGATGGCTTCC 59.496 57.895 0.00 0.00 34.04 3.46
126 127 1.675641 AACTGCACGATGGCTTCCC 60.676 57.895 0.00 0.00 34.04 3.97
127 128 3.197790 CTGCACGATGGCTTCCCG 61.198 66.667 0.00 0.00 34.04 5.14
145 146 4.924019 CCGTTGCTCCGGTATGAA 57.076 55.556 0.00 0.00 43.07 2.57
146 147 3.146783 CCGTTGCTCCGGTATGAAA 57.853 52.632 0.00 0.00 43.07 2.69
147 148 1.006832 CCGTTGCTCCGGTATGAAAG 58.993 55.000 0.00 0.00 43.07 2.62
148 149 0.373716 CGTTGCTCCGGTATGAAAGC 59.626 55.000 0.00 1.75 35.31 3.51
149 150 0.733150 GTTGCTCCGGTATGAAAGCC 59.267 55.000 0.00 0.00 33.79 4.35
150 151 0.742990 TTGCTCCGGTATGAAAGCCG 60.743 55.000 0.00 0.00 46.80 5.52
151 152 2.534903 GCTCCGGTATGAAAGCCGC 61.535 63.158 0.00 0.00 45.98 6.53
152 153 2.202824 TCCGGTATGAAAGCCGCG 60.203 61.111 0.00 0.00 45.98 6.46
153 154 2.202824 CCGGTATGAAAGCCGCGA 60.203 61.111 8.23 0.00 45.98 5.87
154 155 2.522638 CCGGTATGAAAGCCGCGAC 61.523 63.158 8.23 0.00 45.98 5.19
155 156 1.807981 CGGTATGAAAGCCGCGACA 60.808 57.895 8.23 0.00 41.53 4.35
156 157 1.355796 CGGTATGAAAGCCGCGACAA 61.356 55.000 8.23 0.00 41.53 3.18
157 158 0.096454 GGTATGAAAGCCGCGACAAC 59.904 55.000 8.23 0.00 0.00 3.32
158 159 0.247145 GTATGAAAGCCGCGACAACG 60.247 55.000 8.23 0.00 42.93 4.10
159 160 0.668096 TATGAAAGCCGCGACAACGT 60.668 50.000 8.23 0.00 41.98 3.99
160 161 1.897398 ATGAAAGCCGCGACAACGTC 61.897 55.000 8.23 0.00 41.98 4.34
161 162 2.279918 AAAGCCGCGACAACGTCT 60.280 55.556 8.23 0.00 41.98 4.18
162 163 1.828331 GAAAGCCGCGACAACGTCTT 61.828 55.000 8.23 0.00 41.98 3.01
163 164 1.828331 AAAGCCGCGACAACGTCTTC 61.828 55.000 8.23 0.00 41.98 2.87
164 165 2.964438 AAGCCGCGACAACGTCTTCA 62.964 55.000 8.23 0.00 41.98 3.02
165 166 2.591311 GCCGCGACAACGTCTTCAA 61.591 57.895 8.23 0.00 41.98 2.69
166 167 1.200839 CCGCGACAACGTCTTCAAC 59.799 57.895 8.23 0.00 41.98 3.18
178 179 3.334272 GTCTTCAACGGTTTGTTCTGG 57.666 47.619 0.00 0.00 39.29 3.86
179 180 2.681344 GTCTTCAACGGTTTGTTCTGGT 59.319 45.455 0.00 0.00 39.29 4.00
180 181 2.680841 TCTTCAACGGTTTGTTCTGGTG 59.319 45.455 0.00 0.00 39.29 4.17
181 182 2.404923 TCAACGGTTTGTTCTGGTGA 57.595 45.000 0.00 0.00 39.29 4.02
182 183 2.011222 TCAACGGTTTGTTCTGGTGAC 58.989 47.619 0.00 0.00 39.29 3.67
183 184 1.011333 AACGGTTTGTTCTGGTGACG 58.989 50.000 0.00 0.00 35.27 4.35
184 185 0.176219 ACGGTTTGTTCTGGTGACGA 59.824 50.000 0.00 0.00 0.00 4.20
185 186 1.202604 ACGGTTTGTTCTGGTGACGAT 60.203 47.619 0.00 0.00 0.00 3.73
186 187 2.036217 ACGGTTTGTTCTGGTGACGATA 59.964 45.455 0.00 0.00 0.00 2.92
187 188 2.666508 CGGTTTGTTCTGGTGACGATAG 59.333 50.000 0.00 0.00 46.19 2.08
202 203 3.371102 CGATAGTGATCATTCGGTGGT 57.629 47.619 14.37 0.00 31.78 4.16
203 204 3.309388 CGATAGTGATCATTCGGTGGTC 58.691 50.000 14.37 0.00 38.50 4.02
204 205 3.654414 GATAGTGATCATTCGGTGGTCC 58.346 50.000 0.00 0.00 37.13 4.46
205 206 1.275666 AGTGATCATTCGGTGGTCCA 58.724 50.000 0.00 0.00 37.13 4.02
206 207 1.628340 AGTGATCATTCGGTGGTCCAA 59.372 47.619 0.00 0.00 37.13 3.53
207 208 2.039746 AGTGATCATTCGGTGGTCCAAA 59.960 45.455 0.00 0.00 37.13 3.28
208 209 2.420022 GTGATCATTCGGTGGTCCAAAG 59.580 50.000 0.00 0.00 37.13 2.77
209 210 2.304470 TGATCATTCGGTGGTCCAAAGA 59.696 45.455 0.00 0.00 37.13 2.52
210 211 2.178912 TCATTCGGTGGTCCAAAGAC 57.821 50.000 0.00 0.00 42.73 3.01
225 226 7.511959 GTCCAAAGACCTCAAAGTAAATTCT 57.488 36.000 0.00 0.00 37.00 2.40
226 227 8.617290 GTCCAAAGACCTCAAAGTAAATTCTA 57.383 34.615 0.00 0.00 37.00 2.10
227 228 9.232473 GTCCAAAGACCTCAAAGTAAATTCTAT 57.768 33.333 0.00 0.00 37.00 1.98
228 229 9.807921 TCCAAAGACCTCAAAGTAAATTCTATT 57.192 29.630 0.00 0.00 0.00 1.73
249 250 9.675464 TCTATTATTTTCGGGTGATTTGTAAGT 57.325 29.630 0.00 0.00 0.00 2.24
252 253 8.851541 TTATTTTCGGGTGATTTGTAAGTACT 57.148 30.769 0.00 0.00 0.00 2.73
253 254 7.754851 ATTTTCGGGTGATTTGTAAGTACTT 57.245 32.000 13.68 13.68 0.00 2.24
254 255 7.571080 TTTTCGGGTGATTTGTAAGTACTTT 57.429 32.000 14.49 0.00 0.00 2.66
255 256 7.571080 TTTCGGGTGATTTGTAAGTACTTTT 57.429 32.000 14.49 0.00 0.00 2.27
256 257 6.790285 TCGGGTGATTTGTAAGTACTTTTC 57.210 37.500 14.49 8.33 0.00 2.29
257 258 6.527423 TCGGGTGATTTGTAAGTACTTTTCT 58.473 36.000 14.49 0.00 0.00 2.52
258 259 6.993902 TCGGGTGATTTGTAAGTACTTTTCTT 59.006 34.615 14.49 0.00 0.00 2.52
259 260 7.041644 TCGGGTGATTTGTAAGTACTTTTCTTG 60.042 37.037 14.49 0.00 0.00 3.02
260 261 7.041644 CGGGTGATTTGTAAGTACTTTTCTTGA 60.042 37.037 14.49 0.00 0.00 3.02
261 262 8.626526 GGGTGATTTGTAAGTACTTTTCTTGAA 58.373 33.333 14.49 1.77 0.00 2.69
306 307 9.959749 AACTTTATTATGTTTCGTGTGATTTGT 57.040 25.926 0.00 0.00 0.00 2.83
313 314 7.724305 ATGTTTCGTGTGATTTGTAAGTACT 57.276 32.000 0.00 0.00 0.00 2.73
314 315 7.542534 TGTTTCGTGTGATTTGTAAGTACTT 57.457 32.000 13.68 13.68 0.00 2.24
315 316 7.623770 TGTTTCGTGTGATTTGTAAGTACTTC 58.376 34.615 12.39 4.83 0.00 3.01
316 317 7.493320 TGTTTCGTGTGATTTGTAAGTACTTCT 59.507 33.333 12.39 0.00 0.00 2.85
317 318 7.633361 TTCGTGTGATTTGTAAGTACTTCTC 57.367 36.000 12.39 7.53 0.00 2.87
318 319 6.741109 TCGTGTGATTTGTAAGTACTTCTCA 58.259 36.000 12.39 10.10 0.00 3.27
319 320 7.375834 TCGTGTGATTTGTAAGTACTTCTCAT 58.624 34.615 12.39 0.33 0.00 2.90
320 321 7.328493 TCGTGTGATTTGTAAGTACTTCTCATG 59.672 37.037 12.39 9.23 0.00 3.07
321 322 7.328493 CGTGTGATTTGTAAGTACTTCTCATGA 59.672 37.037 12.39 0.00 0.00 3.07
322 323 8.988934 GTGTGATTTGTAAGTACTTCTCATGAA 58.011 33.333 12.39 5.97 0.00 2.57
323 324 9.725019 TGTGATTTGTAAGTACTTCTCATGAAT 57.275 29.630 12.39 10.02 0.00 2.57
324 325 9.979270 GTGATTTGTAAGTACTTCTCATGAATG 57.021 33.333 12.39 0.00 0.00 2.67
325 326 9.725019 TGATTTGTAAGTACTTCTCATGAATGT 57.275 29.630 12.39 0.00 0.00 2.71
330 331 9.599866 TGTAAGTACTTCTCATGAATGTAATGG 57.400 33.333 12.39 0.00 0.00 3.16
331 332 9.817809 GTAAGTACTTCTCATGAATGTAATGGA 57.182 33.333 12.39 0.00 0.00 3.41
333 334 9.911788 AAGTACTTCTCATGAATGTAATGGATT 57.088 29.630 1.12 0.00 0.00 3.01
334 335 9.911788 AGTACTTCTCATGAATGTAATGGATTT 57.088 29.630 0.00 0.00 0.00 2.17
335 336 9.941664 GTACTTCTCATGAATGTAATGGATTTG 57.058 33.333 0.00 0.00 0.00 2.32
336 337 8.812513 ACTTCTCATGAATGTAATGGATTTGA 57.187 30.769 0.00 0.00 0.00 2.69
337 338 9.417561 ACTTCTCATGAATGTAATGGATTTGAT 57.582 29.630 0.00 0.00 0.00 2.57
338 339 9.894783 CTTCTCATGAATGTAATGGATTTGATC 57.105 33.333 0.00 0.00 0.00 2.92
350 351 4.458951 GGATTTGATCCTGTTCGAATCG 57.541 45.455 0.00 0.00 46.19 3.34
351 352 4.119862 GGATTTGATCCTGTTCGAATCGA 58.880 43.478 0.00 0.00 46.19 3.59
352 353 4.570772 GGATTTGATCCTGTTCGAATCGAA 59.429 41.667 14.59 14.59 46.19 3.71
353 354 5.064707 GGATTTGATCCTGTTCGAATCGAAA 59.935 40.000 20.17 4.74 45.47 3.46
354 355 6.403200 GGATTTGATCCTGTTCGAATCGAAAA 60.403 38.462 20.17 14.02 45.47 2.29
355 356 7.837108 GGATTTGATCCTGTTCGAATCGAAAAA 60.837 37.037 20.17 14.36 45.47 1.94
376 377 7.971004 AAAAAGAAAAGAAAAGTCAGCGTAG 57.029 32.000 0.00 0.00 0.00 3.51
377 378 6.679327 AAAGAAAAGAAAAGTCAGCGTAGT 57.321 33.333 0.00 0.00 0.00 2.73
378 379 5.659048 AGAAAAGAAAAGTCAGCGTAGTG 57.341 39.130 0.00 0.00 0.00 2.74
379 380 5.116882 AGAAAAGAAAAGTCAGCGTAGTGT 58.883 37.500 0.00 0.00 0.00 3.55
380 381 6.278363 AGAAAAGAAAAGTCAGCGTAGTGTA 58.722 36.000 0.00 0.00 0.00 2.90
381 382 6.421202 AGAAAAGAAAAGTCAGCGTAGTGTAG 59.579 38.462 0.00 0.00 0.00 2.74
382 383 3.576648 AGAAAAGTCAGCGTAGTGTAGC 58.423 45.455 0.00 0.00 0.00 3.58
388 389 0.248134 CAGCGTAGTGTAGCGTCTCC 60.248 60.000 0.00 0.00 38.61 3.71
428 435 3.108289 CACAGCGCTCCGTCACAG 61.108 66.667 7.13 0.00 0.00 3.66
558 577 1.821753 CCACCCGCAATCACCAAATAA 59.178 47.619 0.00 0.00 0.00 1.40
559 578 2.416701 CCACCCGCAATCACCAAATAAC 60.417 50.000 0.00 0.00 0.00 1.89
560 579 1.822371 ACCCGCAATCACCAAATAACC 59.178 47.619 0.00 0.00 0.00 2.85
561 580 1.136110 CCCGCAATCACCAAATAACCC 59.864 52.381 0.00 0.00 0.00 4.11
662 683 1.230182 AGACCCCCGGATTTCCCTT 60.230 57.895 0.73 0.00 0.00 3.95
663 684 1.226542 GACCCCCGGATTTCCCTTC 59.773 63.158 0.73 0.00 0.00 3.46
664 685 2.280404 GACCCCCGGATTTCCCTTCC 62.280 65.000 0.73 0.00 0.00 3.46
665 686 2.601299 CCCCGGATTTCCCTTCCC 59.399 66.667 0.73 0.00 0.00 3.97
666 687 2.006991 CCCCGGATTTCCCTTCCCT 61.007 63.158 0.73 0.00 0.00 4.20
729 753 3.009695 TCCTTAATTTTCTTCCTGGCCGA 59.990 43.478 0.00 0.00 0.00 5.54
755 779 1.932338 AGTCCAATCCCCATCCACAAT 59.068 47.619 0.00 0.00 0.00 2.71
819 843 3.227276 CCCCGTAGCCTGCGATCT 61.227 66.667 3.01 0.00 0.00 2.75
839 1439 3.626680 TTTGCCTCGGAGTCGCTCG 62.627 63.158 4.02 0.00 36.13 5.03
924 1524 5.297776 CCGAAATCCTCTGTTCAGCAATAAT 59.702 40.000 0.00 0.00 0.00 1.28
925 1525 6.183360 CCGAAATCCTCTGTTCAGCAATAATT 60.183 38.462 0.00 0.00 0.00 1.40
926 1526 7.253422 CGAAATCCTCTGTTCAGCAATAATTT 58.747 34.615 0.00 0.00 0.00 1.82
927 1527 7.756722 CGAAATCCTCTGTTCAGCAATAATTTT 59.243 33.333 0.00 0.00 0.00 1.82
928 1528 9.428097 GAAATCCTCTGTTCAGCAATAATTTTT 57.572 29.630 0.00 0.00 0.00 1.94
1006 1612 2.440247 GGCGAGTCCAAATGGGGG 60.440 66.667 0.00 0.00 37.22 5.40
1128 1734 2.797156 GACAGCGATTTCGACAGCATAT 59.203 45.455 3.77 0.00 43.02 1.78
1129 1735 3.977427 ACAGCGATTTCGACAGCATATA 58.023 40.909 3.77 0.00 43.02 0.86
1152 1801 5.385198 AGTCTTGTAAAGCTGGGAATCAAA 58.615 37.500 0.00 0.00 45.70 2.69
1159 1808 6.945435 TGTAAAGCTGGGAATCAAATGAGTTA 59.055 34.615 0.00 0.00 0.00 2.24
1180 1829 3.904800 AACTTTTCTTGTTGGGGTTGG 57.095 42.857 0.00 0.00 0.00 3.77
1304 1953 0.038435 TGGGTGCAAATGTGAATGCG 60.038 50.000 0.00 0.00 45.47 4.73
1325 1974 0.905357 ATCGGCCTGGTATAGATGCC 59.095 55.000 0.00 0.00 38.74 4.40
1342 1998 4.637534 AGATGCCTAGCAACTTTGTGTATG 59.362 41.667 0.00 0.00 43.62 2.39
1352 2010 5.983118 GCAACTTTGTGTATGGCTTTAGTTT 59.017 36.000 0.00 0.00 0.00 2.66
1392 2050 5.474876 CCTAGAATGCATAACAGGGGATTTC 59.525 44.000 0.00 0.00 0.00 2.17
1402 2060 1.849039 CAGGGGATTTCTCTGGATGGT 59.151 52.381 0.00 0.00 0.00 3.55
1478 2136 5.129634 TCAAGTCTATTGTGGTGCTTCAAA 58.870 37.500 0.00 0.00 0.00 2.69
1479 2137 5.592282 TCAAGTCTATTGTGGTGCTTCAAAA 59.408 36.000 0.00 0.00 0.00 2.44
1538 2205 1.338674 TGACACGACCATAGCCCAAAG 60.339 52.381 0.00 0.00 0.00 2.77
1576 2243 6.547141 TGCATACTTTGGGATATGAAAAGGAG 59.453 38.462 0.00 0.00 35.64 3.69
1773 2440 5.505654 CCAACTCTGCTTTAACGAAATGTGT 60.506 40.000 0.00 0.00 0.00 3.72
1779 2446 6.483974 TCTGCTTTAACGAAATGTGTTCCTTA 59.516 34.615 0.00 0.00 0.00 2.69
1822 2489 4.287067 TCCATAGGATTCTTACTGGATGCC 59.713 45.833 0.00 0.00 0.00 4.40
1887 2555 2.365293 TGCCTCCCTTTTCTTTTTCTGC 59.635 45.455 0.00 0.00 0.00 4.26
2189 2858 4.759516 TTTCTTCACGTCCTATTTTGCC 57.240 40.909 0.00 0.00 0.00 4.52
2401 3070 7.106890 TGTAATATTCCCGTGAAACTTCATCA 58.893 34.615 0.00 0.00 39.73 3.07
2403 3072 2.920724 TCCCGTGAAACTTCATCACA 57.079 45.000 7.36 0.00 45.90 3.58
2488 3157 2.095263 CAGTTGGGCAGTGATTTTACCG 60.095 50.000 0.00 0.00 0.00 4.02
2597 3266 3.134081 GCTTTGGTATGGTGTAGCCTAGA 59.866 47.826 0.00 0.00 38.35 2.43
2615 3284 7.062957 AGCCTAGAAATGTTTATAATGCTGGT 58.937 34.615 0.00 0.00 0.00 4.00
2639 3308 9.283768 GGTTATGTTGACATATTCATATCACCA 57.716 33.333 4.79 0.00 38.49 4.17
2779 3448 7.883311 AGTAATCACTAACCAGTAGCATTTGTT 59.117 33.333 0.00 0.00 32.21 2.83
2840 3509 5.070770 TGCACATAACTGGCCTTTTATTG 57.929 39.130 3.32 8.84 0.00 1.90
3069 3739 9.165057 AGGAAGGTCTATAGAAATATGCTTTCT 57.835 33.333 3.40 4.98 41.25 2.52
3601 4273 5.715429 TTGAATTGCATGTTTGTGTTGTC 57.285 34.783 0.00 0.00 0.00 3.18
3628 4300 5.927281 ACATGCTTTATCAATCTTTGCCT 57.073 34.783 0.00 0.00 0.00 4.75
3834 4509 4.077108 GTTTGGTTTTACCCTACAGGAGG 58.923 47.826 0.00 0.00 46.25 4.30
4393 6414 8.950007 TGTTTCCCCTTACTAATGAATTTTCT 57.050 30.769 0.00 0.00 0.00 2.52
4394 6415 8.802267 TGTTTCCCCTTACTAATGAATTTTCTG 58.198 33.333 0.00 0.00 0.00 3.02
4502 6529 3.815401 ACCAACATCCGCTTATAGAATGC 59.185 43.478 0.00 0.00 0.00 3.56
4526 6553 4.854291 GTGTATATCAGTACATCGCTCAGC 59.146 45.833 0.00 0.00 36.98 4.26
4755 6782 1.580845 CTTTGGCACCTTCAGCGGAG 61.581 60.000 0.00 0.00 0.00 4.63
4830 6857 2.027377 CCAATCAGCTATAGCAGAGGGG 60.027 54.545 26.07 21.88 45.16 4.79
4959 6986 2.030007 TCCAAGCAGCAGCAAATACAAC 60.030 45.455 3.17 0.00 45.49 3.32
5267 7294 5.010012 ACTCTGCAAAACCTGTAGAAAATGG 59.990 40.000 0.00 0.00 44.97 3.16
5273 7300 1.906574 ACCTGTAGAAAATGGAGCCGA 59.093 47.619 0.00 0.00 0.00 5.54
5486 7513 4.536065 TGAACAGCTAAAACAATGAAGCG 58.464 39.130 0.00 0.00 39.94 4.68
5497 7524 0.523072 AATGAAGCGGCATGTCACAC 59.477 50.000 1.45 0.00 0.00 3.82
5498 7525 0.606130 ATGAAGCGGCATGTCACACA 60.606 50.000 1.45 0.00 0.00 3.72
5499 7526 1.207593 GAAGCGGCATGTCACACAC 59.792 57.895 1.45 0.00 0.00 3.82
5500 7527 1.506309 GAAGCGGCATGTCACACACA 61.506 55.000 1.45 0.00 40.18 3.72
5676 7711 3.575630 TGTTCTGTATCGAAGAGTGTGC 58.424 45.455 0.00 0.00 43.63 4.57
5680 7715 1.872234 TATCGAAGAGTGTGCGCGC 60.872 57.895 27.26 27.26 43.63 6.86
5706 7741 7.991084 TTTGTCATGATCAGAGAAATTCAGT 57.009 32.000 0.00 0.00 0.00 3.41
5708 7743 7.606858 TGTCATGATCAGAGAAATTCAGTTC 57.393 36.000 0.00 0.00 0.00 3.01
5728 7763 3.479489 TCAACTGCTTCTGCTTTCATGA 58.521 40.909 0.00 0.00 40.48 3.07
5732 7767 7.049754 TCAACTGCTTCTGCTTTCATGATATA 58.950 34.615 0.00 0.00 40.48 0.86
5742 7777 8.876790 TCTGCTTTCATGATATAGATTATTGCG 58.123 33.333 0.00 0.00 0.00 4.85
5897 8071 6.494893 TGTGTTTCATACTTAAGTCCATGC 57.505 37.500 12.39 0.18 0.00 4.06
6084 8261 0.821711 CCAACTCGGCTTCAAACCCA 60.822 55.000 0.00 0.00 0.00 4.51
6107 8284 3.508845 TTTTAGCTGTGCTCCCTCTTT 57.491 42.857 0.00 0.00 40.44 2.52
6108 8285 2.770164 TTAGCTGTGCTCCCTCTTTC 57.230 50.000 0.00 0.00 40.44 2.62
6109 8286 1.944177 TAGCTGTGCTCCCTCTTTCT 58.056 50.000 0.00 0.00 40.44 2.52
6110 8287 0.324285 AGCTGTGCTCCCTCTTTCTG 59.676 55.000 0.00 0.00 30.62 3.02
6111 8288 0.322975 GCTGTGCTCCCTCTTTCTGA 59.677 55.000 0.00 0.00 0.00 3.27
6112 8289 1.675415 GCTGTGCTCCCTCTTTCTGAG 60.675 57.143 0.00 0.00 42.30 3.35
6134 8311 3.571401 GCTTGAGCTTATAATGTGGGCAT 59.429 43.478 0.00 0.00 38.21 4.40
6135 8312 4.558095 GCTTGAGCTTATAATGTGGGCATG 60.558 45.833 0.00 0.00 38.21 4.06
6358 8536 3.600388 GAGCAAAAGCTTGACTAGGCTA 58.400 45.455 0.00 0.00 37.87 3.93
6359 8537 3.604582 AGCAAAAGCTTGACTAGGCTAG 58.395 45.455 19.83 19.83 37.87 3.42
6403 8581 4.635765 TGAGCACTCATTAACCACTATTGC 59.364 41.667 0.00 0.00 34.14 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.984466 CGTTGCATACGGACGACG 59.016 61.111 1.66 0.00 46.42 5.12
16 17 2.289547 ACCAAATATCGCCGTTGCATAC 59.710 45.455 0.00 0.00 37.32 2.39
17 18 2.289274 CACCAAATATCGCCGTTGCATA 59.711 45.455 0.00 0.00 37.32 3.14
18 19 1.065401 CACCAAATATCGCCGTTGCAT 59.935 47.619 0.00 0.00 37.32 3.96
19 20 0.449786 CACCAAATATCGCCGTTGCA 59.550 50.000 0.00 0.00 37.32 4.08
20 21 0.730265 TCACCAAATATCGCCGTTGC 59.270 50.000 0.00 0.00 0.00 4.17
21 22 1.735018 TGTCACCAAATATCGCCGTTG 59.265 47.619 0.00 0.00 0.00 4.10
22 23 2.102070 TGTCACCAAATATCGCCGTT 57.898 45.000 0.00 0.00 0.00 4.44
23 24 2.006888 CTTGTCACCAAATATCGCCGT 58.993 47.619 0.00 0.00 0.00 5.68
24 25 2.006888 ACTTGTCACCAAATATCGCCG 58.993 47.619 0.00 0.00 0.00 6.46
25 26 3.689649 AGAACTTGTCACCAAATATCGCC 59.310 43.478 0.00 0.00 0.00 5.54
26 27 4.946784 AGAACTTGTCACCAAATATCGC 57.053 40.909 0.00 0.00 0.00 4.58
27 28 6.072728 TCCAAAGAACTTGTCACCAAATATCG 60.073 38.462 0.00 0.00 32.65 2.92
28 29 7.214467 TCCAAAGAACTTGTCACCAAATATC 57.786 36.000 0.00 0.00 32.65 1.63
29 30 7.362056 CGATCCAAAGAACTTGTCACCAAATAT 60.362 37.037 0.00 0.00 32.65 1.28
30 31 6.072728 CGATCCAAAGAACTTGTCACCAAATA 60.073 38.462 0.00 0.00 32.65 1.40
31 32 5.278463 CGATCCAAAGAACTTGTCACCAAAT 60.278 40.000 0.00 0.00 32.65 2.32
32 33 4.036262 CGATCCAAAGAACTTGTCACCAAA 59.964 41.667 0.00 0.00 32.65 3.28
33 34 3.563808 CGATCCAAAGAACTTGTCACCAA 59.436 43.478 0.00 0.00 32.65 3.67
34 35 3.138304 CGATCCAAAGAACTTGTCACCA 58.862 45.455 0.00 0.00 32.65 4.17
35 36 3.399330 TCGATCCAAAGAACTTGTCACC 58.601 45.455 0.00 0.00 32.65 4.02
36 37 5.179368 TGAATCGATCCAAAGAACTTGTCAC 59.821 40.000 0.00 0.00 32.65 3.67
37 38 5.304778 TGAATCGATCCAAAGAACTTGTCA 58.695 37.500 0.00 0.00 32.65 3.58
38 39 5.862924 TGAATCGATCCAAAGAACTTGTC 57.137 39.130 0.00 0.00 32.65 3.18
39 40 5.182001 CCTTGAATCGATCCAAAGAACTTGT 59.818 40.000 13.42 0.00 32.65 3.16
40 41 5.392380 CCCTTGAATCGATCCAAAGAACTTG 60.392 44.000 13.42 0.00 34.52 3.16
41 42 4.702131 CCCTTGAATCGATCCAAAGAACTT 59.298 41.667 13.42 0.00 0.00 2.66
42 43 4.263506 ACCCTTGAATCGATCCAAAGAACT 60.264 41.667 13.42 0.00 0.00 3.01
43 44 4.010349 ACCCTTGAATCGATCCAAAGAAC 58.990 43.478 13.42 0.00 0.00 3.01
44 45 4.261801 GACCCTTGAATCGATCCAAAGAA 58.738 43.478 13.42 0.00 0.00 2.52
45 46 3.370527 GGACCCTTGAATCGATCCAAAGA 60.371 47.826 13.42 0.00 0.00 2.52
46 47 2.945668 GGACCCTTGAATCGATCCAAAG 59.054 50.000 0.00 3.46 0.00 2.77
47 48 2.307392 TGGACCCTTGAATCGATCCAAA 59.693 45.455 0.00 0.00 33.34 3.28
48 49 1.912731 TGGACCCTTGAATCGATCCAA 59.087 47.619 0.00 0.00 33.34 3.53
49 50 1.578897 TGGACCCTTGAATCGATCCA 58.421 50.000 0.00 0.00 33.86 3.41
50 51 2.289565 GTTGGACCCTTGAATCGATCC 58.710 52.381 0.00 0.00 0.00 3.36
51 52 1.933853 CGTTGGACCCTTGAATCGATC 59.066 52.381 0.00 0.00 0.00 3.69
52 53 1.553248 TCGTTGGACCCTTGAATCGAT 59.447 47.619 0.00 0.00 0.00 3.59
53 54 0.970640 TCGTTGGACCCTTGAATCGA 59.029 50.000 0.00 0.00 0.00 3.59
54 55 1.076332 GTCGTTGGACCCTTGAATCG 58.924 55.000 0.00 0.00 37.19 3.34
55 56 1.076332 CGTCGTTGGACCCTTGAATC 58.924 55.000 0.00 0.00 40.17 2.52
56 57 0.682852 TCGTCGTTGGACCCTTGAAT 59.317 50.000 0.00 0.00 40.17 2.57
57 58 0.464870 TTCGTCGTTGGACCCTTGAA 59.535 50.000 0.00 0.00 40.17 2.69
58 59 0.464870 TTTCGTCGTTGGACCCTTGA 59.535 50.000 0.00 0.00 40.17 3.02
59 60 0.865769 CTTTCGTCGTTGGACCCTTG 59.134 55.000 0.00 0.00 40.17 3.61
60 61 0.466963 ACTTTCGTCGTTGGACCCTT 59.533 50.000 0.00 0.00 40.17 3.95
61 62 0.466963 AACTTTCGTCGTTGGACCCT 59.533 50.000 0.00 0.00 40.17 4.34
62 63 0.584876 CAACTTTCGTCGTTGGACCC 59.415 55.000 0.00 0.00 40.17 4.46
63 64 0.041576 GCAACTTTCGTCGTTGGACC 60.042 55.000 13.16 0.00 41.45 4.46
64 65 0.382636 CGCAACTTTCGTCGTTGGAC 60.383 55.000 13.16 0.00 41.45 4.02
65 66 0.806884 ACGCAACTTTCGTCGTTGGA 60.807 50.000 13.16 0.00 41.45 3.53
66 67 0.382636 GACGCAACTTTCGTCGTTGG 60.383 55.000 13.16 7.96 45.19 3.77
67 68 3.038472 GACGCAACTTTCGTCGTTG 57.962 52.632 0.00 8.94 45.19 4.10
72 73 1.145377 ACTGGGACGCAACTTTCGT 59.855 52.632 0.00 0.00 43.49 3.85
73 74 1.569493 CACTGGGACGCAACTTTCG 59.431 57.895 0.00 0.00 0.00 3.46
74 75 1.282875 GCACTGGGACGCAACTTTC 59.717 57.895 0.00 0.00 0.00 2.62
75 76 2.542907 CGCACTGGGACGCAACTTT 61.543 57.895 0.00 0.00 0.00 2.66
76 77 2.972505 CGCACTGGGACGCAACTT 60.973 61.111 0.00 0.00 0.00 2.66
82 83 2.887568 GATCAGCGCACTGGGACG 60.888 66.667 11.47 0.00 44.59 4.79
83 84 2.512515 GGATCAGCGCACTGGGAC 60.513 66.667 11.47 0.00 44.59 4.46
84 85 2.293318 AAGGATCAGCGCACTGGGA 61.293 57.895 11.47 0.00 44.59 4.37
85 86 2.110967 CAAGGATCAGCGCACTGGG 61.111 63.158 11.47 0.00 44.59 4.45
86 87 1.078918 TCAAGGATCAGCGCACTGG 60.079 57.895 11.47 0.00 44.59 4.00
87 88 1.088340 CCTCAAGGATCAGCGCACTG 61.088 60.000 11.47 0.00 40.74 3.66
88 89 1.220206 CCTCAAGGATCAGCGCACT 59.780 57.895 11.47 0.00 37.39 4.40
89 90 2.467826 GCCTCAAGGATCAGCGCAC 61.468 63.158 11.47 0.00 37.39 5.34
90 91 2.124983 GCCTCAAGGATCAGCGCA 60.125 61.111 11.47 0.00 37.39 6.09
91 92 1.746615 TTGCCTCAAGGATCAGCGC 60.747 57.895 0.00 0.00 37.39 5.92
92 93 0.392193 AGTTGCCTCAAGGATCAGCG 60.392 55.000 0.00 0.00 37.39 5.18
93 94 1.093159 CAGTTGCCTCAAGGATCAGC 58.907 55.000 0.00 0.00 37.39 4.26
94 95 1.093159 GCAGTTGCCTCAAGGATCAG 58.907 55.000 0.00 0.00 37.39 2.90
95 96 0.401356 TGCAGTTGCCTCAAGGATCA 59.599 50.000 0.00 0.00 41.18 2.92
96 97 0.807496 GTGCAGTTGCCTCAAGGATC 59.193 55.000 0.00 0.00 41.18 3.36
97 98 0.957395 CGTGCAGTTGCCTCAAGGAT 60.957 55.000 0.00 0.00 41.18 3.24
98 99 1.597854 CGTGCAGTTGCCTCAAGGA 60.598 57.895 0.00 0.00 41.18 3.36
99 100 0.957395 ATCGTGCAGTTGCCTCAAGG 60.957 55.000 1.06 0.00 41.18 3.61
100 101 0.167470 CATCGTGCAGTTGCCTCAAG 59.833 55.000 1.06 0.00 41.18 3.02
101 102 1.236616 CCATCGTGCAGTTGCCTCAA 61.237 55.000 1.06 0.00 41.18 3.02
102 103 1.672030 CCATCGTGCAGTTGCCTCA 60.672 57.895 1.06 0.00 41.18 3.86
103 104 3.044059 GCCATCGTGCAGTTGCCTC 62.044 63.158 1.06 0.00 41.18 4.70
104 105 3.058160 GCCATCGTGCAGTTGCCT 61.058 61.111 1.06 0.00 41.18 4.75
105 106 2.533391 GAAGCCATCGTGCAGTTGCC 62.533 60.000 1.06 0.00 41.18 4.52
106 107 1.154150 GAAGCCATCGTGCAGTTGC 60.154 57.895 0.00 0.00 42.50 4.17
107 108 1.503542 GGAAGCCATCGTGCAGTTG 59.496 57.895 0.00 0.00 0.00 3.16
108 109 1.675641 GGGAAGCCATCGTGCAGTT 60.676 57.895 0.00 0.00 0.00 3.16
109 110 2.045926 GGGAAGCCATCGTGCAGT 60.046 61.111 0.00 0.00 0.00 4.40
110 111 3.197790 CGGGAAGCCATCGTGCAG 61.198 66.667 0.00 0.00 0.00 4.41
129 130 0.373716 GCTTTCATACCGGAGCAACG 59.626 55.000 9.46 0.00 35.29 4.10
130 131 0.733150 GGCTTTCATACCGGAGCAAC 59.267 55.000 9.46 0.00 36.87 4.17
131 132 0.742990 CGGCTTTCATACCGGAGCAA 60.743 55.000 9.46 0.00 45.74 3.91
132 133 1.153449 CGGCTTTCATACCGGAGCA 60.153 57.895 9.46 0.00 45.74 4.26
133 134 3.719214 CGGCTTTCATACCGGAGC 58.281 61.111 9.46 4.95 45.74 4.70
138 139 0.096454 GTTGTCGCGGCTTTCATACC 59.904 55.000 13.81 0.00 0.00 2.73
139 140 0.247145 CGTTGTCGCGGCTTTCATAC 60.247 55.000 13.81 0.00 0.00 2.39
140 141 0.668096 ACGTTGTCGCGGCTTTCATA 60.668 50.000 13.81 0.00 41.18 2.15
141 142 1.897398 GACGTTGTCGCGGCTTTCAT 61.897 55.000 13.81 0.00 41.18 2.57
142 143 2.586635 ACGTTGTCGCGGCTTTCA 60.587 55.556 13.81 0.00 41.18 2.69
143 144 2.170273 GACGTTGTCGCGGCTTTC 59.830 61.111 13.81 0.92 41.18 2.62
147 148 2.591311 TTGAAGACGTTGTCGCGGC 61.591 57.895 2.29 2.29 41.18 6.53
148 149 1.200839 GTTGAAGACGTTGTCGCGG 59.799 57.895 6.13 0.00 41.18 6.46
149 150 1.155087 CGTTGAAGACGTTGTCGCG 60.155 57.895 0.00 0.00 46.49 5.87
150 151 4.772213 CGTTGAAGACGTTGTCGC 57.228 55.556 0.00 0.00 46.49 5.19
158 159 2.681344 ACCAGAACAAACCGTTGAAGAC 59.319 45.455 0.00 0.00 38.19 3.01
159 160 2.680841 CACCAGAACAAACCGTTGAAGA 59.319 45.455 0.00 0.00 38.19 2.87
160 161 2.680841 TCACCAGAACAAACCGTTGAAG 59.319 45.455 0.00 0.00 38.19 3.02
161 162 2.420722 GTCACCAGAACAAACCGTTGAA 59.579 45.455 0.00 0.00 38.19 2.69
162 163 2.011222 GTCACCAGAACAAACCGTTGA 58.989 47.619 0.00 0.00 38.19 3.18
163 164 1.267832 CGTCACCAGAACAAACCGTTG 60.268 52.381 0.00 0.00 38.19 4.10
164 165 1.011333 CGTCACCAGAACAAACCGTT 58.989 50.000 0.00 0.00 41.86 4.44
165 166 0.176219 TCGTCACCAGAACAAACCGT 59.824 50.000 0.00 0.00 0.00 4.83
166 167 1.508632 ATCGTCACCAGAACAAACCG 58.491 50.000 0.00 0.00 0.00 4.44
167 168 3.432252 CACTATCGTCACCAGAACAAACC 59.568 47.826 0.00 0.00 0.00 3.27
168 169 4.304110 TCACTATCGTCACCAGAACAAAC 58.696 43.478 0.00 0.00 0.00 2.93
169 170 4.594123 TCACTATCGTCACCAGAACAAA 57.406 40.909 0.00 0.00 0.00 2.83
170 171 4.219725 TGATCACTATCGTCACCAGAACAA 59.780 41.667 0.00 0.00 34.60 2.83
171 172 3.761752 TGATCACTATCGTCACCAGAACA 59.238 43.478 0.00 0.00 34.60 3.18
172 173 4.371855 TGATCACTATCGTCACCAGAAC 57.628 45.455 0.00 0.00 34.60 3.01
173 174 5.592054 GAATGATCACTATCGTCACCAGAA 58.408 41.667 0.00 0.00 34.60 3.02
174 175 4.261197 CGAATGATCACTATCGTCACCAGA 60.261 45.833 15.51 0.00 34.60 3.86
175 176 3.977579 CGAATGATCACTATCGTCACCAG 59.022 47.826 15.51 0.00 34.60 4.00
176 177 3.243401 CCGAATGATCACTATCGTCACCA 60.243 47.826 19.75 0.00 34.60 4.17
177 178 3.243434 ACCGAATGATCACTATCGTCACC 60.243 47.826 19.75 0.00 34.60 4.02
178 179 3.731216 CACCGAATGATCACTATCGTCAC 59.269 47.826 19.75 0.00 34.60 3.67
179 180 3.243401 CCACCGAATGATCACTATCGTCA 60.243 47.826 19.75 0.00 34.60 4.35
180 181 3.243434 ACCACCGAATGATCACTATCGTC 60.243 47.826 19.75 3.55 34.60 4.20
181 182 2.693591 ACCACCGAATGATCACTATCGT 59.306 45.455 19.75 9.88 34.60 3.73
182 183 3.309388 GACCACCGAATGATCACTATCG 58.691 50.000 16.37 16.37 34.60 2.92
183 184 3.069586 TGGACCACCGAATGATCACTATC 59.930 47.826 0.00 0.00 39.42 2.08
184 185 3.038280 TGGACCACCGAATGATCACTAT 58.962 45.455 0.00 0.00 39.42 2.12
185 186 2.462723 TGGACCACCGAATGATCACTA 58.537 47.619 0.00 0.00 39.42 2.74
186 187 1.275666 TGGACCACCGAATGATCACT 58.724 50.000 0.00 0.00 39.42 3.41
187 188 2.107950 TTGGACCACCGAATGATCAC 57.892 50.000 0.00 0.00 39.42 3.06
188 189 2.304470 TCTTTGGACCACCGAATGATCA 59.696 45.455 0.00 0.00 38.70 2.92
189 190 2.678336 GTCTTTGGACCACCGAATGATC 59.322 50.000 0.00 0.00 38.70 2.92
190 191 2.711542 GTCTTTGGACCACCGAATGAT 58.288 47.619 0.00 0.00 38.70 2.45
191 192 2.178912 GTCTTTGGACCACCGAATGA 57.821 50.000 0.00 0.00 38.70 2.57
201 202 7.511959 AGAATTTACTTTGAGGTCTTTGGAC 57.488 36.000 0.00 0.00 41.43 4.02
202 203 9.807921 AATAGAATTTACTTTGAGGTCTTTGGA 57.192 29.630 0.00 0.00 0.00 3.53
223 224 9.675464 ACTTACAAATCACCCGAAAATAATAGA 57.325 29.630 0.00 0.00 0.00 1.98
226 227 9.457436 AGTACTTACAAATCACCCGAAAATAAT 57.543 29.630 0.00 0.00 0.00 1.28
227 228 8.851541 AGTACTTACAAATCACCCGAAAATAA 57.148 30.769 0.00 0.00 0.00 1.40
228 229 8.851541 AAGTACTTACAAATCACCCGAAAATA 57.148 30.769 6.26 0.00 0.00 1.40
229 230 7.754851 AAGTACTTACAAATCACCCGAAAAT 57.245 32.000 6.26 0.00 0.00 1.82
230 231 7.571080 AAAGTACTTACAAATCACCCGAAAA 57.429 32.000 8.92 0.00 0.00 2.29
231 232 7.499895 AGAAAAGTACTTACAAATCACCCGAAA 59.500 33.333 8.92 0.00 0.00 3.46
232 233 6.993902 AGAAAAGTACTTACAAATCACCCGAA 59.006 34.615 8.92 0.00 0.00 4.30
233 234 6.527423 AGAAAAGTACTTACAAATCACCCGA 58.473 36.000 8.92 0.00 0.00 5.14
234 235 6.796705 AGAAAAGTACTTACAAATCACCCG 57.203 37.500 8.92 0.00 0.00 5.28
235 236 8.161699 TCAAGAAAAGTACTTACAAATCACCC 57.838 34.615 8.92 0.00 0.00 4.61
280 281 9.959749 ACAAATCACACGAAACATAATAAAGTT 57.040 25.926 0.00 0.00 0.00 2.66
287 288 9.263538 AGTACTTACAAATCACACGAAACATAA 57.736 29.630 0.00 0.00 0.00 1.90
288 289 8.821147 AGTACTTACAAATCACACGAAACATA 57.179 30.769 0.00 0.00 0.00 2.29
289 290 7.724305 AGTACTTACAAATCACACGAAACAT 57.276 32.000 0.00 0.00 0.00 2.71
290 291 7.493320 AGAAGTACTTACAAATCACACGAAACA 59.507 33.333 8.42 0.00 0.00 2.83
291 292 7.848491 AGAAGTACTTACAAATCACACGAAAC 58.152 34.615 8.42 0.00 0.00 2.78
292 293 7.707464 TGAGAAGTACTTACAAATCACACGAAA 59.293 33.333 8.42 0.00 0.00 3.46
293 294 7.204604 TGAGAAGTACTTACAAATCACACGAA 58.795 34.615 8.42 0.00 0.00 3.85
294 295 6.741109 TGAGAAGTACTTACAAATCACACGA 58.259 36.000 8.42 0.00 0.00 4.35
295 296 7.328493 TCATGAGAAGTACTTACAAATCACACG 59.672 37.037 8.42 0.00 0.00 4.49
296 297 8.534333 TCATGAGAAGTACTTACAAATCACAC 57.466 34.615 8.42 0.00 0.00 3.82
297 298 9.725019 ATTCATGAGAAGTACTTACAAATCACA 57.275 29.630 8.42 0.28 37.14 3.58
298 299 9.979270 CATTCATGAGAAGTACTTACAAATCAC 57.021 33.333 8.42 0.00 37.14 3.06
299 300 9.725019 ACATTCATGAGAAGTACTTACAAATCA 57.275 29.630 8.42 8.47 37.14 2.57
304 305 9.599866 CCATTACATTCATGAGAAGTACTTACA 57.400 33.333 8.42 12.20 37.14 2.41
305 306 9.817809 TCCATTACATTCATGAGAAGTACTTAC 57.182 33.333 8.42 6.71 37.14 2.34
307 308 9.911788 AATCCATTACATTCATGAGAAGTACTT 57.088 29.630 8.13 8.13 37.14 2.24
308 309 9.911788 AAATCCATTACATTCATGAGAAGTACT 57.088 29.630 0.00 0.00 37.14 2.73
309 310 9.941664 CAAATCCATTACATTCATGAGAAGTAC 57.058 33.333 0.00 0.00 37.14 2.73
310 311 9.904198 TCAAATCCATTACATTCATGAGAAGTA 57.096 29.630 0.00 0.00 37.14 2.24
311 312 8.812513 TCAAATCCATTACATTCATGAGAAGT 57.187 30.769 0.00 0.00 37.14 3.01
312 313 9.894783 GATCAAATCCATTACATTCATGAGAAG 57.105 33.333 0.00 0.00 37.14 2.85
325 326 7.900440 TCGATTCGAACAGGATCAAATCCATTA 60.900 37.037 6.24 0.00 41.83 1.90
326 327 7.130488 TCGATTCGAACAGGATCAAATCCATT 61.130 38.462 6.24 2.56 41.83 3.16
327 328 5.684813 TCGATTCGAACAGGATCAAATCCAT 60.685 40.000 6.24 0.00 41.83 3.41
328 329 4.382577 TCGATTCGAACAGGATCAAATCCA 60.383 41.667 6.24 0.00 41.83 3.41
329 330 4.119862 TCGATTCGAACAGGATCAAATCC 58.880 43.478 6.24 0.00 40.56 3.01
330 331 5.718649 TTCGATTCGAACAGGATCAAATC 57.281 39.130 17.08 0.00 41.05 2.17
331 332 6.494893 TTTTCGATTCGAACAGGATCAAAT 57.505 33.333 20.38 0.00 45.64 2.32
332 333 5.933187 TTTTCGATTCGAACAGGATCAAA 57.067 34.783 20.38 7.48 45.64 2.69
333 334 5.933187 TTTTTCGATTCGAACAGGATCAA 57.067 34.783 20.38 8.17 45.64 2.57
352 353 7.484959 CACTACGCTGACTTTTCTTTTCTTTTT 59.515 33.333 0.00 0.00 0.00 1.94
353 354 6.967199 CACTACGCTGACTTTTCTTTTCTTTT 59.033 34.615 0.00 0.00 0.00 2.27
354 355 6.093633 ACACTACGCTGACTTTTCTTTTCTTT 59.906 34.615 0.00 0.00 0.00 2.52
355 356 5.585047 ACACTACGCTGACTTTTCTTTTCTT 59.415 36.000 0.00 0.00 0.00 2.52
356 357 5.116882 ACACTACGCTGACTTTTCTTTTCT 58.883 37.500 0.00 0.00 0.00 2.52
357 358 5.405331 ACACTACGCTGACTTTTCTTTTC 57.595 39.130 0.00 0.00 0.00 2.29
358 359 5.050295 GCTACACTACGCTGACTTTTCTTTT 60.050 40.000 0.00 0.00 0.00 2.27
359 360 4.448060 GCTACACTACGCTGACTTTTCTTT 59.552 41.667 0.00 0.00 0.00 2.52
360 361 3.988517 GCTACACTACGCTGACTTTTCTT 59.011 43.478 0.00 0.00 0.00 2.52
361 362 3.576648 GCTACACTACGCTGACTTTTCT 58.423 45.455 0.00 0.00 0.00 2.52
362 363 2.341760 CGCTACACTACGCTGACTTTTC 59.658 50.000 0.00 0.00 0.00 2.29
363 364 2.288030 ACGCTACACTACGCTGACTTTT 60.288 45.455 0.00 0.00 0.00 2.27
364 365 1.268899 ACGCTACACTACGCTGACTTT 59.731 47.619 0.00 0.00 0.00 2.66
365 366 0.879765 ACGCTACACTACGCTGACTT 59.120 50.000 0.00 0.00 0.00 3.01
366 367 0.447011 GACGCTACACTACGCTGACT 59.553 55.000 0.00 0.00 0.00 3.41
367 368 0.447011 AGACGCTACACTACGCTGAC 59.553 55.000 0.00 0.00 0.00 3.51
368 369 0.725686 GAGACGCTACACTACGCTGA 59.274 55.000 0.00 0.00 0.00 4.26
369 370 0.248134 GGAGACGCTACACTACGCTG 60.248 60.000 0.00 0.00 0.00 5.18
370 371 2.096596 GGAGACGCTACACTACGCT 58.903 57.895 0.00 0.00 0.00 5.07
371 372 4.686227 GGAGACGCTACACTACGC 57.314 61.111 0.00 0.00 0.00 4.42
388 389 2.962569 TCTGGAAGAGCCACGTCG 59.037 61.111 0.00 0.00 43.33 5.12
575 594 2.604686 AGAGGGCGAGAGTTGGCA 60.605 61.111 0.00 0.00 0.00 4.92
662 683 7.340232 CAGAAAGATGATCAAACCAAATAGGGA 59.660 37.037 0.00 0.00 43.89 4.20
663 684 7.340232 TCAGAAAGATGATCAAACCAAATAGGG 59.660 37.037 0.00 0.00 43.89 3.53
664 685 8.284945 TCAGAAAGATGATCAAACCAAATAGG 57.715 34.615 0.00 0.00 45.67 2.57
665 686 7.914346 GCTCAGAAAGATGATCAAACCAAATAG 59.086 37.037 0.00 0.00 0.00 1.73
666 687 7.613022 AGCTCAGAAAGATGATCAAACCAAATA 59.387 33.333 0.00 0.00 0.00 1.40
729 753 0.253820 ATGGGGATTGGACTGGACCT 60.254 55.000 0.00 0.00 0.00 3.85
806 830 1.202188 GGCAAAAAGATCGCAGGCTAC 60.202 52.381 0.00 0.00 0.00 3.58
812 836 0.321210 TCCGAGGCAAAAAGATCGCA 60.321 50.000 0.00 0.00 33.94 5.10
819 843 0.949105 GAGCGACTCCGAGGCAAAAA 60.949 55.000 1.23 0.00 38.22 1.94
928 1528 2.092699 CCCTTGCCCAAAACTGGAAAAA 60.093 45.455 0.00 0.00 0.00 1.94
929 1529 1.488393 CCCTTGCCCAAAACTGGAAAA 59.512 47.619 0.00 0.00 0.00 2.29
930 1530 1.127343 CCCTTGCCCAAAACTGGAAA 58.873 50.000 0.00 0.00 0.00 3.13
931 1531 0.263172 TCCCTTGCCCAAAACTGGAA 59.737 50.000 0.00 0.00 0.00 3.53
1006 1612 0.322816 TCCTCCTTGGATTGCTGCAC 60.323 55.000 0.00 0.00 40.56 4.57
1092 1698 3.056328 GTCCTTGCCTCAACGCCC 61.056 66.667 0.00 0.00 0.00 6.13
1128 1734 5.755409 TGATTCCCAGCTTTACAAGACTA 57.245 39.130 0.00 0.00 0.00 2.59
1129 1735 4.640771 TGATTCCCAGCTTTACAAGACT 57.359 40.909 0.00 0.00 0.00 3.24
1152 1801 6.382859 ACCCCAACAAGAAAAGTTTAACTCAT 59.617 34.615 0.00 0.00 0.00 2.90
1159 1808 3.841255 TCCAACCCCAACAAGAAAAGTTT 59.159 39.130 0.00 0.00 0.00 2.66
1180 1829 2.729882 CACTGCAAGCAAGCAAGAAATC 59.270 45.455 4.63 0.00 45.13 2.17
1304 1953 2.159085 GGCATCTATACCAGGCCGATAC 60.159 54.545 0.00 0.00 34.56 2.24
1325 1974 5.376854 AAAGCCATACACAAAGTTGCTAG 57.623 39.130 0.00 0.00 31.03 3.42
1392 2050 1.206610 CTCACTCCACACCATCCAGAG 59.793 57.143 0.00 0.00 0.00 3.35
1402 2060 5.650266 ACAACAAATTTGTACTCACTCCACA 59.350 36.000 23.53 0.00 41.31 4.17
1442 2100 8.206867 CACAATAGACTTGATCTAATTCCTGGA 58.793 37.037 0.00 0.00 43.33 3.86
1444 2102 7.989741 ACCACAATAGACTTGATCTAATTCCTG 59.010 37.037 0.00 0.00 43.33 3.86
1505 2163 4.395231 TGGTCGTGTCAAAATTAACACACA 59.605 37.500 15.07 9.69 44.75 3.72
1509 2176 5.106475 GGCTATGGTCGTGTCAAAATTAACA 60.106 40.000 0.00 0.00 0.00 2.41
1513 2180 2.752903 GGGCTATGGTCGTGTCAAAATT 59.247 45.455 0.00 0.00 0.00 1.82
1521 2188 0.035439 ACCTTTGGGCTATGGTCGTG 60.035 55.000 0.00 0.00 35.63 4.35
1538 2205 6.201997 CCCAAAGTATGCACAACTTTAAAACC 59.798 38.462 22.09 0.00 43.52 3.27
1631 2298 4.468095 AGGCTATATTTTTACTTGCGCG 57.532 40.909 0.00 0.00 0.00 6.86
1887 2555 1.645034 CCAGCGTGTGATCCTACAAG 58.355 55.000 0.00 0.00 33.93 3.16
2189 2858 9.638300 GTGCAAGTCAAATCGAAGTATAATAAG 57.362 33.333 0.00 0.00 0.00 1.73
2401 3070 5.102953 ACATCTATGTGCTTGTGGTATGT 57.897 39.130 0.00 0.00 40.03 2.29
2639 3308 8.062065 TCCATAAAAGAGTTGTTCACTTTGTT 57.938 30.769 0.00 0.00 37.13 2.83
2915 3585 7.770433 CCAATCACCTTTCTGAGTATATTGTGA 59.230 37.037 0.00 0.00 35.03 3.58
2932 3602 5.594317 GCATGGATTAACTAACCAATCACCT 59.406 40.000 0.00 0.00 37.24 4.00
3060 3730 1.725641 CTGCACACGGAGAAAGCATA 58.274 50.000 0.00 0.00 34.35 3.14
3069 3739 3.535629 CTCCAAGGCTGCACACGGA 62.536 63.158 0.50 0.49 0.00 4.69
3601 4273 6.197096 GCAAAGATTGATAAAGCATGTAACCG 59.803 38.462 0.00 0.00 0.00 4.44
3747 4419 0.606401 ACCTCGTGTTTCCATGCCAG 60.606 55.000 0.00 0.00 0.00 4.85
3834 4509 6.131389 GTGTGTGGTTGTAGTAATTTTCGTC 58.869 40.000 0.00 0.00 0.00 4.20
3882 4557 8.715191 AGAATTTAATGTGCAAACAACAAGAA 57.285 26.923 0.00 0.00 0.00 2.52
3940 4616 3.987745 AGAGAGCAGGAGGAATCACTAA 58.012 45.455 0.00 0.00 0.00 2.24
4016 6033 3.066342 ACATTTGCACAGAGATATGCTGC 59.934 43.478 0.00 0.00 36.86 5.25
4017 6034 4.895224 ACATTTGCACAGAGATATGCTG 57.105 40.909 0.00 0.00 39.26 4.41
4018 6035 5.066117 CAGAACATTTGCACAGAGATATGCT 59.934 40.000 0.00 0.00 0.00 3.79
4502 6529 5.030874 TGAGCGATGTACTGATATACACG 57.969 43.478 0.00 0.00 37.88 4.49
4959 6986 1.128200 TTCCAGGTACATCCCATCCG 58.872 55.000 0.00 0.00 36.75 4.18
5460 7487 6.292328 GCTTCATTGTTTTAGCTGTTCAAACC 60.292 38.462 0.00 0.00 30.64 3.27
5486 7513 2.488937 TCAATGATGTGTGTGACATGCC 59.511 45.455 0.00 0.00 45.90 4.40
5497 7524 2.100252 GGAAGCACCCATCAATGATGTG 59.900 50.000 20.39 12.82 38.28 3.21
5498 7525 2.381911 GGAAGCACCCATCAATGATGT 58.618 47.619 20.39 2.17 38.28 3.06
5653 7688 4.169508 CACACTCTTCGATACAGAACAGG 58.830 47.826 0.00 0.00 0.00 4.00
5659 7694 0.917259 GCGCACACTCTTCGATACAG 59.083 55.000 0.30 0.00 0.00 2.74
5664 7699 3.914605 ATGCGCGCACACTCTTCGA 62.915 57.895 39.05 9.89 0.00 3.71
5676 7711 1.328374 TCTGATCATGACAAATGCGCG 59.672 47.619 0.00 0.00 0.00 6.86
5680 7715 8.459635 ACTGAATTTCTCTGATCATGACAAATG 58.540 33.333 0.00 0.00 0.00 2.32
5706 7741 3.884693 TCATGAAAGCAGAAGCAGTTGAA 59.115 39.130 0.00 0.00 45.49 2.69
5708 7743 3.909776 TCATGAAAGCAGAAGCAGTTG 57.090 42.857 0.00 0.00 45.49 3.16
5728 7763 7.411486 ACCTAGCAGACGCAATAATCTATAT 57.589 36.000 0.00 0.00 42.27 0.86
5732 7767 4.408182 AACCTAGCAGACGCAATAATCT 57.592 40.909 0.00 0.00 42.27 2.40
5742 7777 5.074584 ACTAGCTTTGTAACCTAGCAGAC 57.925 43.478 0.00 0.00 37.37 3.51
5913 8087 7.649533 ATTTCATGATCTACCTTGAATTGCA 57.350 32.000 0.00 0.00 32.59 4.08
6021 8198 6.215227 TCCATGGAGGCCTTAATTTTGAAAAT 59.785 34.615 11.44 0.00 37.29 1.82
6109 8286 8.828417 ATGCCCACATTATAAGCTCAAGCTCA 62.828 42.308 4.73 0.00 41.91 4.26
6110 8287 6.494883 ATGCCCACATTATAAGCTCAAGCTC 61.495 44.000 4.73 0.00 41.91 4.09
6111 8288 4.690818 ATGCCCACATTATAAGCTCAAGCT 60.691 41.667 0.00 0.00 43.81 3.74
6112 8289 2.951642 TGCCCACATTATAAGCTCAAGC 59.048 45.455 0.00 0.00 42.49 4.01
6113 8290 4.022589 CCATGCCCACATTATAAGCTCAAG 60.023 45.833 0.00 0.00 32.87 3.02
6114 8291 3.890756 CCATGCCCACATTATAAGCTCAA 59.109 43.478 0.00 0.00 32.87 3.02
6126 8303 0.969917 CCGAAAATCCCATGCCCACA 60.970 55.000 0.00 0.00 0.00 4.17
6134 8311 6.492087 AGTCAAAATAAAGACCGAAAATCCCA 59.508 34.615 0.00 0.00 35.38 4.37
6135 8312 6.920817 AGTCAAAATAAAGACCGAAAATCCC 58.079 36.000 0.00 0.00 35.38 3.85
6240 8417 8.750298 CGTTAATCCATCCCTAGTTCTATACAT 58.250 37.037 0.00 0.00 0.00 2.29
6358 8536 1.474879 GAGCCTAACGAGCTTCAGACT 59.525 52.381 0.00 0.00 41.75 3.24
6359 8537 1.202582 TGAGCCTAACGAGCTTCAGAC 59.797 52.381 0.00 0.00 41.75 3.51
6403 8581 5.439721 TCATCCCCTCATTAGATGTTTGTG 58.560 41.667 0.00 0.00 38.79 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.