Multiple sequence alignment - TraesCS1B01G106800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G106800 chr1B 100.000 3808 0 0 1 3808 118490362 118486555 0.000000e+00 7033.0
1 TraesCS1B01G106800 chr1B 89.700 233 20 3 2724 2953 118487414 118487183 1.030000e-75 294.0
2 TraesCS1B01G106800 chr1B 89.700 233 20 3 2949 3180 118487639 118487410 1.030000e-75 294.0
3 TraesCS1B01G106800 chr1B 86.792 212 19 2 484 695 118487054 118486852 1.060000e-55 228.0
4 TraesCS1B01G106800 chr1B 86.792 212 19 2 3309 3511 118489879 118489668 1.060000e-55 228.0
5 TraesCS1B01G106800 chr1A 90.000 1610 99 19 1367 2940 75256619 75255036 0.000000e+00 2025.0
6 TraesCS1B01G106800 chr1A 90.707 721 38 2 2949 3669 75255252 75254561 0.000000e+00 933.0
7 TraesCS1B01G106800 chr1A 94.062 421 17 4 1 413 75259382 75258962 1.930000e-177 632.0
8 TraesCS1B01G106800 chr1A 83.574 554 36 15 833 1351 75257140 75256607 5.760000e-128 468.0
9 TraesCS1B01G106800 chr1A 92.248 258 11 3 407 664 75257638 75257390 1.300000e-94 357.0
10 TraesCS1B01G106800 chr1A 96.172 209 8 0 640 848 75257364 75257156 3.640000e-90 342.0
11 TraesCS1B01G106800 chr1A 90.000 180 13 1 3306 3480 75257569 75257390 1.060000e-55 228.0
12 TraesCS1B01G106800 chr1A 84.906 212 21 6 484 695 75254919 75254719 1.790000e-48 204.0
13 TraesCS1B01G106800 chr1A 89.286 56 6 0 3456 3511 75257364 75257309 1.900000e-08 71.3
14 TraesCS1B01G106800 chr1D 94.671 1032 34 7 1 1017 74931864 74930839 0.000000e+00 1581.0
15 TraesCS1B01G106800 chr1D 92.067 832 51 7 1367 2191 74930462 74929639 0.000000e+00 1157.0
16 TraesCS1B01G106800 chr1D 90.000 780 50 10 2189 2940 74928553 74927774 0.000000e+00 983.0
17 TraesCS1B01G106800 chr1D 79.130 920 147 29 1662 2570 45080031 45079146 9.110000e-166 593.0
18 TraesCS1B01G106800 chr1D 78.332 923 151 27 1662 2570 44970987 44970100 5.560000e-153 551.0
19 TraesCS1B01G106800 chr1D 77.826 920 159 24 1662 2570 45113968 45113083 9.370000e-146 527.0
20 TraesCS1B01G106800 chr1D 87.446 462 29 12 2949 3410 74927990 74927558 4.390000e-139 505.0
21 TraesCS1B01G106800 chr1D 94.717 265 12 1 3407 3669 74927238 74926974 9.850000e-111 411.0
22 TraesCS1B01G106800 chr1D 87.738 367 24 10 1002 1351 74930812 74930450 3.540000e-110 409.0
23 TraesCS1B01G106800 chr1D 83.333 306 40 7 1662 1958 45078744 45079047 4.850000e-69 272.0
24 TraesCS1B01G106800 chr1D 89.573 211 17 1 3306 3511 74931371 74931161 2.920000e-66 263.0
25 TraesCS1B01G106800 chr1D 84.300 293 14 15 1368 1657 44978601 44978338 1.360000e-64 257.0
26 TraesCS1B01G106800 chr1D 82.258 310 40 8 1662 1958 44969694 44970001 1.760000e-63 254.0
27 TraesCS1B01G106800 chr1D 90.104 192 15 3 1157 1347 45097209 45097021 2.940000e-61 246.0
28 TraesCS1B01G106800 chr1D 83.448 290 18 13 1368 1654 45097028 45096766 3.800000e-60 243.0
29 TraesCS1B01G106800 chr1D 88.571 105 12 0 591 695 74927238 74927134 1.110000e-25 128.0
30 TraesCS1B01G106800 chr1D 97.368 38 1 0 3744 3781 44978942 44978905 8.830000e-07 65.8
31 TraesCS1B01G106800 chr1D 97.368 38 1 0 3744 3781 45097369 45097332 8.830000e-07 65.8
32 TraesCS1B01G106800 chr3D 87.490 1199 127 13 1679 2861 93176192 93177383 0.000000e+00 1362.0
33 TraesCS1B01G106800 chr3A 85.151 1192 159 13 1679 2861 546718529 546717347 0.000000e+00 1205.0
34 TraesCS1B01G106800 chr3B 81.400 914 109 29 1955 2861 143175482 143174623 0.000000e+00 689.0
35 TraesCS1B01G106800 chr3B 87.549 257 26 5 1679 1929 143175991 143175735 3.720000e-75 292.0
36 TraesCS1B01G106800 chr5B 82.609 253 44 0 2237 2489 401667774 401668026 1.380000e-54 224.0
37 TraesCS1B01G106800 chr5A 81.915 94 13 1 1194 1283 443278014 443278107 4.080000e-10 76.8
38 TraesCS1B01G106800 chr2D 95.000 40 2 0 1879 1918 388481836 388481797 3.180000e-06 63.9
39 TraesCS1B01G106800 chr2A 95.000 40 2 0 1879 1918 524953124 524953085 3.180000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G106800 chr1B 118486555 118490362 3807 True 1615.400000 7033 90.596800 1 3808 5 chr1B.!!$R1 3807
1 TraesCS1B01G106800 chr1A 75254561 75259382 4821 True 584.477778 2025 90.106111 1 3669 9 chr1A.!!$R1 3668
2 TraesCS1B01G106800 chr1D 74926974 74931864 4890 True 679.625000 1581 90.597875 1 3669 8 chr1D.!!$R6 3668
3 TraesCS1B01G106800 chr1D 45079146 45080031 885 True 593.000000 593 79.130000 1662 2570 1 chr1D.!!$R2 908
4 TraesCS1B01G106800 chr1D 44970100 44970987 887 True 551.000000 551 78.332000 1662 2570 1 chr1D.!!$R1 908
5 TraesCS1B01G106800 chr1D 45113083 45113968 885 True 527.000000 527 77.826000 1662 2570 1 chr1D.!!$R3 908
6 TraesCS1B01G106800 chr3D 93176192 93177383 1191 False 1362.000000 1362 87.490000 1679 2861 1 chr3D.!!$F1 1182
7 TraesCS1B01G106800 chr3A 546717347 546718529 1182 True 1205.000000 1205 85.151000 1679 2861 1 chr3A.!!$R1 1182
8 TraesCS1B01G106800 chr3B 143174623 143175991 1368 True 490.500000 689 84.474500 1679 2861 2 chr3B.!!$R1 1182

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 180 0.179100 CTCGTACCAGCCATCAGGTG 60.179 60.0 0.0 0.0 43.90 4.00 F
2085 3847 0.318441 CGGATGCCACGGAGTATGAT 59.682 55.0 0.0 0.0 41.61 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 3856 0.094901 CTCGTCGTCGTACTCTGTGG 59.905 60.0 1.33 0.0 38.33 4.17 R
3092 5974 0.033796 CCAGGTTCCTGTGCATGGAT 60.034 55.0 16.33 0.0 38.68 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 99 3.668141 TCATATGGTGCCTGTTTGGAT 57.332 42.857 2.13 0.00 38.35 3.41
173 180 0.179100 CTCGTACCAGCCATCAGGTG 60.179 60.000 0.00 0.00 43.90 4.00
276 286 7.588488 CCGATCACTTTTTATTGTGTAAAACGT 59.412 33.333 0.00 0.00 35.82 3.99
360 370 5.248248 TGTCATCACCTTTCTGATCTTGGTA 59.752 40.000 0.00 0.00 0.00 3.25
402 412 1.065418 CCAGATTAACGTCCAGCCCTT 60.065 52.381 0.00 0.00 0.00 3.95
413 1753 1.379044 CAGCCCTTCACCACCATCC 60.379 63.158 0.00 0.00 0.00 3.51
419 1759 2.905736 CCCTTCACCACCATCCAAAAAT 59.094 45.455 0.00 0.00 0.00 1.82
449 1789 1.770658 TCTATAGGCTTGGCTGCATGT 59.229 47.619 6.97 0.00 34.04 3.21
554 1900 6.292168 CCCATCTTAAGAAACTAATGCGTACG 60.292 42.308 11.84 11.84 0.00 3.67
555 1901 6.255020 CCATCTTAAGAAACTAATGCGTACGT 59.745 38.462 17.90 0.00 0.00 3.57
556 1902 7.433131 CCATCTTAAGAAACTAATGCGTACGTA 59.567 37.037 17.90 13.65 0.00 3.57
557 1903 7.725610 TCTTAAGAAACTAATGCGTACGTAC 57.274 36.000 17.90 15.90 0.00 3.67
575 1921 6.616774 ACGTACTAGCTAGTGTTTATCTCC 57.383 41.667 32.21 10.25 37.10 3.71
794 2190 8.762481 ATGCATGCCATAATATAGATGACAAT 57.238 30.769 16.68 0.00 30.69 2.71
795 2191 8.584063 TGCATGCCATAATATAGATGACAATT 57.416 30.769 16.68 0.00 0.00 2.32
1054 2554 3.799420 CCAACGAGTTCTAGCTAGCATTC 59.201 47.826 18.83 10.65 0.00 2.67
1055 2555 3.719173 ACGAGTTCTAGCTAGCATTCC 57.281 47.619 18.83 0.23 0.00 3.01
1056 2556 2.362717 ACGAGTTCTAGCTAGCATTCCC 59.637 50.000 18.83 1.39 0.00 3.97
1057 2557 2.288518 CGAGTTCTAGCTAGCATTCCCC 60.289 54.545 18.83 0.00 0.00 4.81
1059 2559 1.687123 GTTCTAGCTAGCATTCCCCGA 59.313 52.381 18.83 0.00 0.00 5.14
1060 2560 2.082140 TCTAGCTAGCATTCCCCGAA 57.918 50.000 18.83 0.00 0.00 4.30
1062 2562 2.769663 TCTAGCTAGCATTCCCCGAAAA 59.230 45.455 18.83 0.00 0.00 2.29
1063 2563 2.507407 AGCTAGCATTCCCCGAAAAA 57.493 45.000 18.83 0.00 0.00 1.94
1153 2653 3.254060 CTGTGTGTCCATCTACGAAAGG 58.746 50.000 0.00 0.00 0.00 3.11
1171 2671 1.705997 GGGTGGGTGTGAGTTCAGGT 61.706 60.000 0.00 0.00 0.00 4.00
1234 2750 5.714806 TGAAAAATAATTCCCTCCACTCACC 59.285 40.000 0.00 0.00 0.00 4.02
1257 2773 5.522460 CCAACTACACGGGTAATGATTACAG 59.478 44.000 16.34 11.79 37.88 2.74
1272 2788 8.579850 AATGATTACAGCCATAAGAGTTTCAA 57.420 30.769 0.00 0.00 0.00 2.69
1351 2867 7.283127 CAGTCCACCTATGTATTTTACTTGCAT 59.717 37.037 0.00 0.00 0.00 3.96
1352 2868 7.834181 AGTCCACCTATGTATTTTACTTGCATT 59.166 33.333 0.00 0.00 0.00 3.56
1355 2871 9.651913 CCACCTATGTATTTTACTTGCATTTTT 57.348 29.630 0.00 0.00 0.00 1.94
1483 2999 7.960738 GCGTAGTAAATTCTGAACAATAGCAAA 59.039 33.333 0.00 0.00 0.00 3.68
1529 3046 7.509546 AGAGAAACATTCTTAAGTGTTCTCCA 58.490 34.615 20.10 0.00 40.87 3.86
1530 3047 7.442666 AGAGAAACATTCTTAAGTGTTCTCCAC 59.557 37.037 20.10 13.49 41.51 4.02
1531 3048 7.283329 AGAAACATTCTTAAGTGTTCTCCACT 58.717 34.615 10.82 0.00 46.95 4.00
1546 3063 6.269077 TGTTCTCCACTTCTCCTTACACATAA 59.731 38.462 0.00 0.00 0.00 1.90
1547 3064 6.531503 TCTCCACTTCTCCTTACACATAAG 57.468 41.667 0.00 0.00 38.04 1.73
1554 3071 7.591426 CACTTCTCCTTACACATAAGTTTTTGC 59.409 37.037 0.00 0.00 36.77 3.68
1821 3351 2.272146 GGTGGGCATGTCGTGGAT 59.728 61.111 0.00 0.00 0.00 3.41
2037 3797 2.052690 CCCGGGTGTCGACTCTGAT 61.053 63.158 14.18 0.00 42.43 2.90
2085 3847 0.318441 CGGATGCCACGGAGTATGAT 59.682 55.000 0.00 0.00 41.61 2.45
2093 3856 2.128035 CACGGAGTATGATTCGGAAGC 58.872 52.381 0.00 0.00 41.61 3.86
2118 3881 2.812609 TACGACGACGAGCGCTCT 60.813 61.111 32.88 20.73 46.04 4.09
2159 3922 1.550130 CCACCCGTGTACCATCCAGT 61.550 60.000 0.00 0.00 0.00 4.00
2337 5188 0.541063 TCACCACCGACCAGAAGCTA 60.541 55.000 0.00 0.00 0.00 3.32
2339 5190 0.830444 ACCACCGACCAGAAGCTACA 60.830 55.000 0.00 0.00 0.00 2.74
2512 5363 2.016393 CTCCGCCGCAACCTCATCTA 62.016 60.000 0.00 0.00 0.00 1.98
2523 5374 1.825474 ACCTCATCTACTGTTGGACCG 59.175 52.381 0.00 0.00 0.00 4.79
2640 5492 5.199723 TGCCATGGAAGCATTTATCTGTTA 58.800 37.500 18.40 0.00 34.69 2.41
2814 5696 6.717997 ACGTTTCCCTTGTACCAGAATAAAAT 59.282 34.615 0.00 0.00 0.00 1.82
2888 5770 0.888736 CCATGCACAGGAACGTGGAA 60.889 55.000 0.66 0.00 44.32 3.53
2940 5822 7.930865 GTCAAGAGGAGCTCATTATTTATCACT 59.069 37.037 17.19 0.00 32.06 3.41
2942 5824 7.003402 AGAGGAGCTCATTATTTATCACTCC 57.997 40.000 17.19 0.00 42.25 3.85
2943 5825 6.556495 AGAGGAGCTCATTATTTATCACTCCA 59.444 38.462 17.19 0.00 43.95 3.86
2944 5826 7.071698 AGAGGAGCTCATTATTTATCACTCCAA 59.928 37.037 17.19 0.00 43.95 3.53
2945 5827 6.995091 AGGAGCTCATTATTTATCACTCCAAC 59.005 38.462 17.19 0.00 43.95 3.77
2946 5828 6.205658 GGAGCTCATTATTTATCACTCCAACC 59.794 42.308 17.19 0.00 41.68 3.77
2947 5829 6.904626 AGCTCATTATTTATCACTCCAACCT 58.095 36.000 0.00 0.00 0.00 3.50
2948 5830 6.995091 AGCTCATTATTTATCACTCCAACCTC 59.005 38.462 0.00 0.00 0.00 3.85
2949 5831 6.073548 GCTCATTATTTATCACTCCAACCTCG 60.074 42.308 0.00 0.00 0.00 4.63
2950 5832 7.119709 TCATTATTTATCACTCCAACCTCGA 57.880 36.000 0.00 0.00 0.00 4.04
2951 5833 7.735917 TCATTATTTATCACTCCAACCTCGAT 58.264 34.615 0.00 0.00 0.00 3.59
2952 5834 8.210946 TCATTATTTATCACTCCAACCTCGATT 58.789 33.333 0.00 0.00 0.00 3.34
2953 5835 8.840321 CATTATTTATCACTCCAACCTCGATTT 58.160 33.333 0.00 0.00 0.00 2.17
2954 5836 8.801882 TTATTTATCACTCCAACCTCGATTTT 57.198 30.769 0.00 0.00 0.00 1.82
2955 5837 6.737254 TTTATCACTCCAACCTCGATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
2956 5838 2.683968 TCACTCCAACCTCGATTTTCG 58.316 47.619 0.00 0.00 42.10 3.46
2957 5839 2.036733 TCACTCCAACCTCGATTTTCGT 59.963 45.455 0.00 0.00 41.35 3.85
2958 5840 2.157668 CACTCCAACCTCGATTTTCGTG 59.842 50.000 0.00 0.00 41.35 4.35
2962 5844 2.399611 CCTCGATTTTCGTGGCGC 59.600 61.111 0.00 0.00 44.81 6.53
2963 5845 2.020016 CTCGATTTTCGTGGCGCG 59.980 61.111 15.42 15.42 41.35 6.86
2971 5853 2.584970 TCGTGGCGCGATCAATCC 60.585 61.111 20.52 0.00 45.68 3.01
2972 5854 3.988385 CGTGGCGCGATCAATCCG 61.988 66.667 16.70 3.62 44.77 4.18
2973 5855 2.890474 GTGGCGCGATCAATCCGT 60.890 61.111 12.10 0.00 0.00 4.69
2974 5856 2.584970 TGGCGCGATCAATCCGTC 60.585 61.111 12.10 0.00 0.00 4.79
2975 5857 3.338676 GGCGCGATCAATCCGTCC 61.339 66.667 12.10 0.00 0.00 4.79
2976 5858 3.692367 GCGCGATCAATCCGTCCG 61.692 66.667 12.10 0.00 0.00 4.79
2977 5859 2.278596 CGCGATCAATCCGTCCGT 60.279 61.111 0.00 0.00 0.00 4.69
2978 5860 2.576893 CGCGATCAATCCGTCCGTG 61.577 63.158 0.00 0.00 0.00 4.94
2979 5861 2.237751 GCGATCAATCCGTCCGTGG 61.238 63.158 0.00 0.00 0.00 4.94
2980 5862 1.591594 CGATCAATCCGTCCGTGGG 60.592 63.158 0.00 0.00 0.00 4.61
2981 5863 1.820581 GATCAATCCGTCCGTGGGA 59.179 57.895 0.00 0.00 38.10 4.37
2982 5864 0.393077 GATCAATCCGTCCGTGGGAT 59.607 55.000 0.00 0.00 46.14 3.85
2983 5865 0.106708 ATCAATCCGTCCGTGGGATG 59.893 55.000 0.52 0.00 43.43 3.51
2984 5866 1.220749 CAATCCGTCCGTGGGATGT 59.779 57.895 3.39 0.00 43.43 3.06
2985 5867 0.810031 CAATCCGTCCGTGGGATGTC 60.810 60.000 3.39 0.00 43.43 3.06
2986 5868 1.261938 AATCCGTCCGTGGGATGTCA 61.262 55.000 3.39 0.00 43.43 3.58
2987 5869 1.956629 ATCCGTCCGTGGGATGTCAC 61.957 60.000 3.39 0.00 42.63 3.67
2988 5870 2.654289 CGTCCGTGGGATGTCACA 59.346 61.111 0.00 0.00 37.50 3.58
2989 5871 1.005512 CGTCCGTGGGATGTCACAA 60.006 57.895 0.00 0.00 37.50 3.33
2990 5872 0.601576 CGTCCGTGGGATGTCACAAA 60.602 55.000 0.00 0.00 37.50 2.83
2991 5873 0.872388 GTCCGTGGGATGTCACAAAC 59.128 55.000 0.00 0.00 37.50 2.93
2992 5874 0.250553 TCCGTGGGATGTCACAAACC 60.251 55.000 0.00 0.00 37.50 3.27
2993 5875 0.250727 CCGTGGGATGTCACAAACCT 60.251 55.000 3.10 0.00 37.50 3.50
2994 5876 0.874390 CGTGGGATGTCACAAACCTG 59.126 55.000 3.10 0.00 37.50 4.00
2995 5877 1.813862 CGTGGGATGTCACAAACCTGT 60.814 52.381 3.10 0.00 37.50 4.00
2996 5878 1.880027 GTGGGATGTCACAAACCTGTC 59.120 52.381 3.10 0.00 37.57 3.51
2997 5879 1.492599 TGGGATGTCACAAACCTGTCA 59.507 47.619 3.10 0.00 31.64 3.58
2998 5880 2.092158 TGGGATGTCACAAACCTGTCAA 60.092 45.455 3.10 0.00 31.64 3.18
2999 5881 2.554032 GGGATGTCACAAACCTGTCAAG 59.446 50.000 4.70 0.00 31.64 3.02
3008 5890 2.358737 CCTGTCAAGGTCGTGGGC 60.359 66.667 0.00 0.00 38.96 5.36
3009 5891 2.425592 CTGTCAAGGTCGTGGGCA 59.574 61.111 0.00 0.00 0.00 5.36
3010 5892 1.003355 CTGTCAAGGTCGTGGGCAT 60.003 57.895 0.00 0.00 0.00 4.40
3011 5893 0.606401 CTGTCAAGGTCGTGGGCATT 60.606 55.000 0.00 0.00 0.00 3.56
3012 5894 0.888736 TGTCAAGGTCGTGGGCATTG 60.889 55.000 0.00 0.00 0.00 2.82
3013 5895 1.971167 TCAAGGTCGTGGGCATTGC 60.971 57.895 0.00 0.00 0.00 3.56
3014 5896 2.115052 AAGGTCGTGGGCATTGCA 59.885 55.556 11.39 0.00 0.00 4.08
3015 5897 2.268076 AAGGTCGTGGGCATTGCAC 61.268 57.895 11.39 7.60 0.00 4.57
3016 5898 4.101790 GGTCGTGGGCATTGCACG 62.102 66.667 11.39 12.63 42.87 5.34
3017 5899 3.353836 GTCGTGGGCATTGCACGT 61.354 61.111 17.62 0.00 42.24 4.49
3018 5900 2.593148 TCGTGGGCATTGCACGTT 60.593 55.556 17.62 0.00 42.24 3.99
3019 5901 2.190170 TCGTGGGCATTGCACGTTT 61.190 52.632 17.62 0.00 42.24 3.60
3020 5902 1.729131 CGTGGGCATTGCACGTTTC 60.729 57.895 11.39 0.00 32.76 2.78
3021 5903 1.372872 GTGGGCATTGCACGTTTCC 60.373 57.895 11.39 1.67 32.76 3.13
3022 5904 2.261361 GGGCATTGCACGTTTCCC 59.739 61.111 11.39 0.00 0.00 3.97
3023 5905 2.275380 GGGCATTGCACGTTTCCCT 61.275 57.895 11.39 0.00 0.00 4.20
3024 5906 1.665442 GGCATTGCACGTTTCCCTT 59.335 52.632 11.39 0.00 0.00 3.95
3025 5907 0.885196 GGCATTGCACGTTTCCCTTA 59.115 50.000 11.39 0.00 0.00 2.69
3026 5908 1.476488 GGCATTGCACGTTTCCCTTAT 59.524 47.619 11.39 0.00 0.00 1.73
3027 5909 2.685897 GGCATTGCACGTTTCCCTTATA 59.314 45.455 11.39 0.00 0.00 0.98
3028 5910 3.488553 GGCATTGCACGTTTCCCTTATAC 60.489 47.826 11.39 0.00 0.00 1.47
3029 5911 3.488553 GCATTGCACGTTTCCCTTATACC 60.489 47.826 3.15 0.00 0.00 2.73
3030 5912 3.420300 TTGCACGTTTCCCTTATACCA 57.580 42.857 0.00 0.00 0.00 3.25
3031 5913 2.980568 TGCACGTTTCCCTTATACCAG 58.019 47.619 0.00 0.00 0.00 4.00
3032 5914 2.568062 TGCACGTTTCCCTTATACCAGA 59.432 45.455 0.00 0.00 0.00 3.86
3033 5915 3.008157 TGCACGTTTCCCTTATACCAGAA 59.992 43.478 0.00 0.00 0.00 3.02
3034 5916 4.196971 GCACGTTTCCCTTATACCAGAAT 58.803 43.478 0.00 0.00 0.00 2.40
3035 5917 5.104859 TGCACGTTTCCCTTATACCAGAATA 60.105 40.000 0.00 0.00 0.00 1.75
3036 5918 5.818857 GCACGTTTCCCTTATACCAGAATAA 59.181 40.000 0.00 0.00 0.00 1.40
3037 5919 6.316890 GCACGTTTCCCTTATACCAGAATAAA 59.683 38.462 0.00 0.00 0.00 1.40
3038 5920 7.012989 GCACGTTTCCCTTATACCAGAATAAAT 59.987 37.037 0.00 0.00 0.00 1.40
3039 5921 8.342634 CACGTTTCCCTTATACCAGAATAAATG 58.657 37.037 0.00 0.00 0.00 2.32
3040 5922 8.269317 ACGTTTCCCTTATACCAGAATAAATGA 58.731 33.333 0.00 0.00 0.00 2.57
3041 5923 9.116067 CGTTTCCCTTATACCAGAATAAATGAA 57.884 33.333 0.00 0.00 0.00 2.57
3043 5925 9.640952 TTTCCCTTATACCAGAATAAATGAAGG 57.359 33.333 0.00 0.00 0.00 3.46
3044 5926 8.344939 TCCCTTATACCAGAATAAATGAAGGT 57.655 34.615 0.00 0.00 30.98 3.50
3045 5927 8.217799 TCCCTTATACCAGAATAAATGAAGGTG 58.782 37.037 0.00 0.00 30.98 4.00
3046 5928 8.217799 CCCTTATACCAGAATAAATGAAGGTGA 58.782 37.037 0.00 0.00 30.98 4.02
3047 5929 9.627123 CCTTATACCAGAATAAATGAAGGTGAA 57.373 33.333 0.00 0.00 0.00 3.18
3051 5933 9.753674 ATACCAGAATAAATGAAGGTGAAAGAA 57.246 29.630 0.00 0.00 0.00 2.52
3052 5934 8.477419 ACCAGAATAAATGAAGGTGAAAGAAA 57.523 30.769 0.00 0.00 0.00 2.52
3053 5935 9.093458 ACCAGAATAAATGAAGGTGAAAGAAAT 57.907 29.630 0.00 0.00 0.00 2.17
3054 5936 9.362539 CCAGAATAAATGAAGGTGAAAGAAATG 57.637 33.333 0.00 0.00 0.00 2.32
3061 5943 9.889128 AAATGAAGGTGAAAGAAATGAGAAAAA 57.111 25.926 0.00 0.00 0.00 1.94
3063 5945 9.702494 ATGAAGGTGAAAGAAATGAGAAAAATC 57.298 29.630 0.00 0.00 0.00 2.17
3064 5946 8.143835 TGAAGGTGAAAGAAATGAGAAAAATCC 58.856 33.333 0.00 0.00 0.00 3.01
3065 5947 6.997655 AGGTGAAAGAAATGAGAAAAATCCC 58.002 36.000 0.00 0.00 0.00 3.85
3066 5948 6.554605 AGGTGAAAGAAATGAGAAAAATCCCA 59.445 34.615 0.00 0.00 0.00 4.37
3067 5949 7.071071 AGGTGAAAGAAATGAGAAAAATCCCAA 59.929 33.333 0.00 0.00 0.00 4.12
3068 5950 7.879677 GGTGAAAGAAATGAGAAAAATCCCAAT 59.120 33.333 0.00 0.00 0.00 3.16
3069 5951 9.276590 GTGAAAGAAATGAGAAAAATCCCAATT 57.723 29.630 0.00 0.00 0.00 2.32
3070 5952 9.275398 TGAAAGAAATGAGAAAAATCCCAATTG 57.725 29.630 0.00 0.00 0.00 2.32
3071 5953 7.677454 AAGAAATGAGAAAAATCCCAATTGC 57.323 32.000 0.00 0.00 0.00 3.56
3072 5954 6.771573 AGAAATGAGAAAAATCCCAATTGCA 58.228 32.000 0.00 0.00 0.00 4.08
3073 5955 6.652062 AGAAATGAGAAAAATCCCAATTGCAC 59.348 34.615 0.00 0.00 0.00 4.57
3074 5956 3.911868 TGAGAAAAATCCCAATTGCACG 58.088 40.909 0.00 0.00 0.00 5.34
3075 5957 2.667969 GAGAAAAATCCCAATTGCACGC 59.332 45.455 0.00 0.00 0.00 5.34
3076 5958 1.389784 GAAAAATCCCAATTGCACGCG 59.610 47.619 3.53 3.53 0.00 6.01
3077 5959 0.389687 AAAATCCCAATTGCACGCGG 60.390 50.000 12.47 0.00 0.00 6.46
3078 5960 1.531739 AAATCCCAATTGCACGCGGT 61.532 50.000 12.47 0.00 0.00 5.68
3079 5961 2.211619 AATCCCAATTGCACGCGGTG 62.212 55.000 12.47 7.75 36.51 4.94
3098 5980 2.934277 CGAAAAGCACGCATCCATG 58.066 52.632 0.00 0.00 0.00 3.66
3109 5991 3.583054 CATCCATGCACAGGAACCT 57.417 52.632 13.22 0.00 38.93 3.50
3119 6001 2.286826 CAGGAACCTGGATCGGACA 58.713 57.895 12.54 0.00 40.17 4.02
3120 6002 0.176680 CAGGAACCTGGATCGGACAG 59.823 60.000 12.54 0.00 40.17 3.51
3121 6003 0.252284 AGGAACCTGGATCGGACAGT 60.252 55.000 0.00 0.00 34.16 3.55
3122 6004 0.613777 GGAACCTGGATCGGACAGTT 59.386 55.000 0.00 0.00 34.16 3.16
3123 6005 1.405661 GGAACCTGGATCGGACAGTTC 60.406 57.143 0.00 0.00 34.16 3.01
3124 6006 1.275291 GAACCTGGATCGGACAGTTCA 59.725 52.381 0.00 0.00 34.16 3.18
3125 6007 1.573108 ACCTGGATCGGACAGTTCAT 58.427 50.000 0.00 0.00 34.16 2.57
3126 6008 2.747177 ACCTGGATCGGACAGTTCATA 58.253 47.619 0.00 0.00 34.16 2.15
3127 6009 3.309296 ACCTGGATCGGACAGTTCATAT 58.691 45.455 0.00 0.00 34.16 1.78
3128 6010 3.711704 ACCTGGATCGGACAGTTCATATT 59.288 43.478 0.00 0.00 34.16 1.28
3129 6011 4.060900 CCTGGATCGGACAGTTCATATTG 58.939 47.826 0.00 0.00 34.16 1.90
3130 6012 4.202253 CCTGGATCGGACAGTTCATATTGA 60.202 45.833 0.00 0.00 34.16 2.57
3131 6013 4.948847 TGGATCGGACAGTTCATATTGAG 58.051 43.478 0.00 0.00 0.00 3.02
3132 6014 4.202253 TGGATCGGACAGTTCATATTGAGG 60.202 45.833 0.00 0.00 0.00 3.86
3133 6015 3.179443 TCGGACAGTTCATATTGAGGC 57.821 47.619 0.00 0.00 0.00 4.70
3134 6016 2.499693 TCGGACAGTTCATATTGAGGCA 59.500 45.455 0.00 0.00 0.00 4.75
3135 6017 3.134623 TCGGACAGTTCATATTGAGGCAT 59.865 43.478 0.00 0.00 0.00 4.40
3136 6018 3.496130 CGGACAGTTCATATTGAGGCATC 59.504 47.826 0.00 0.00 0.00 3.91
3137 6019 3.496130 GGACAGTTCATATTGAGGCATCG 59.504 47.826 0.00 0.00 0.00 3.84
3138 6020 3.470709 ACAGTTCATATTGAGGCATCGG 58.529 45.455 0.00 0.00 0.00 4.18
3139 6021 2.810274 CAGTTCATATTGAGGCATCGGG 59.190 50.000 0.00 0.00 0.00 5.14
3140 6022 2.439507 AGTTCATATTGAGGCATCGGGT 59.560 45.455 0.00 0.00 0.00 5.28
3141 6023 2.808543 GTTCATATTGAGGCATCGGGTC 59.191 50.000 0.00 0.00 0.00 4.46
3142 6024 2.046292 TCATATTGAGGCATCGGGTCA 58.954 47.619 0.00 0.00 0.00 4.02
3143 6025 2.437651 TCATATTGAGGCATCGGGTCAA 59.562 45.455 0.00 0.00 34.79 3.18
3144 6026 2.620251 TATTGAGGCATCGGGTCAAG 57.380 50.000 0.00 0.00 33.83 3.02
3145 6027 0.911769 ATTGAGGCATCGGGTCAAGA 59.088 50.000 0.00 0.00 33.83 3.02
3146 6028 0.250234 TTGAGGCATCGGGTCAAGAG 59.750 55.000 0.00 0.00 0.00 2.85
3147 6029 0.614697 TGAGGCATCGGGTCAAGAGA 60.615 55.000 0.00 0.00 0.00 3.10
3148 6030 0.537188 GAGGCATCGGGTCAAGAGAA 59.463 55.000 0.00 0.00 0.00 2.87
3149 6031 0.539051 AGGCATCGGGTCAAGAGAAG 59.461 55.000 0.00 0.00 0.00 2.85
3150 6032 1.092345 GGCATCGGGTCAAGAGAAGC 61.092 60.000 0.00 0.00 0.00 3.86
3151 6033 0.107945 GCATCGGGTCAAGAGAAGCT 60.108 55.000 0.00 0.00 0.00 3.74
3152 6034 1.933247 CATCGGGTCAAGAGAAGCTC 58.067 55.000 0.00 0.00 0.00 4.09
3153 6035 1.205655 CATCGGGTCAAGAGAAGCTCA 59.794 52.381 0.00 0.00 32.06 4.26
3154 6036 1.561643 TCGGGTCAAGAGAAGCTCAT 58.438 50.000 0.00 0.00 32.06 2.90
3155 6037 1.902508 TCGGGTCAAGAGAAGCTCATT 59.097 47.619 0.00 0.00 32.06 2.57
3156 6038 3.096852 TCGGGTCAAGAGAAGCTCATTA 58.903 45.455 0.00 0.00 32.06 1.90
3157 6039 3.706594 TCGGGTCAAGAGAAGCTCATTAT 59.293 43.478 0.00 0.00 32.06 1.28
3158 6040 4.162320 TCGGGTCAAGAGAAGCTCATTATT 59.838 41.667 0.00 0.00 32.06 1.40
3159 6041 4.878397 CGGGTCAAGAGAAGCTCATTATTT 59.122 41.667 0.00 0.00 32.06 1.40
3160 6042 6.049149 CGGGTCAAGAGAAGCTCATTATTTA 58.951 40.000 0.00 0.00 32.06 1.40
3161 6043 6.708054 CGGGTCAAGAGAAGCTCATTATTTAT 59.292 38.462 0.00 0.00 32.06 1.40
3162 6044 7.095439 CGGGTCAAGAGAAGCTCATTATTTATC 60.095 40.741 0.00 0.00 32.06 1.75
3163 6045 7.716998 GGGTCAAGAGAAGCTCATTATTTATCA 59.283 37.037 0.00 0.00 32.06 2.15
3164 6046 8.555361 GGTCAAGAGAAGCTCATTATTTATCAC 58.445 37.037 0.00 0.00 32.06 3.06
3165 6047 9.102757 GTCAAGAGAAGCTCATTATTTATCACA 57.897 33.333 0.00 0.00 32.06 3.58
3166 6048 9.102757 TCAAGAGAAGCTCATTATTTATCACAC 57.897 33.333 0.00 0.00 32.06 3.82
3167 6049 9.107177 CAAGAGAAGCTCATTATTTATCACACT 57.893 33.333 0.00 0.00 32.06 3.55
3168 6050 8.885494 AGAGAAGCTCATTATTTATCACACTC 57.115 34.615 0.00 0.00 32.06 3.51
3171 6053 8.049117 AGAAGCTCATTATTTATCACACTCCAA 58.951 33.333 0.00 0.00 0.00 3.53
3246 6128 2.426842 AGGCTTGGCTCCAGATTAAC 57.573 50.000 0.00 0.00 0.00 2.01
3247 6129 1.017387 GGCTTGGCTCCAGATTAACG 58.983 55.000 0.00 0.00 0.00 3.18
3248 6130 1.679032 GGCTTGGCTCCAGATTAACGT 60.679 52.381 0.00 0.00 0.00 3.99
3249 6131 2.084546 GCTTGGCTCCAGATTAACGTT 58.915 47.619 5.88 5.88 0.00 3.99
3250 6132 2.096013 GCTTGGCTCCAGATTAACGTTC 59.904 50.000 2.82 0.00 0.00 3.95
3251 6133 2.396590 TGGCTCCAGATTAACGTTCC 57.603 50.000 2.82 0.00 0.00 3.62
3252 6134 1.626321 TGGCTCCAGATTAACGTTCCA 59.374 47.619 2.82 0.00 0.00 3.53
3253 6135 2.280628 GGCTCCAGATTAACGTTCCAG 58.719 52.381 2.82 0.00 0.00 3.86
3254 6136 2.354805 GGCTCCAGATTAACGTTCCAGT 60.355 50.000 2.82 0.00 0.00 4.00
3255 6137 2.930682 GCTCCAGATTAACGTTCCAGTC 59.069 50.000 2.82 0.00 0.00 3.51
3256 6138 3.522553 CTCCAGATTAACGTTCCAGTCC 58.477 50.000 2.82 0.00 0.00 3.85
3257 6139 3.170717 TCCAGATTAACGTTCCAGTCCT 58.829 45.455 2.82 0.00 0.00 3.85
3258 6140 4.346730 TCCAGATTAACGTTCCAGTCCTA 58.653 43.478 2.82 0.00 0.00 2.94
3259 6141 4.159135 TCCAGATTAACGTTCCAGTCCTAC 59.841 45.833 2.82 0.00 0.00 3.18
3260 6142 4.103357 CAGATTAACGTTCCAGTCCTACG 58.897 47.826 2.82 0.00 40.85 3.51
3261 6143 2.352503 TTAACGTTCCAGTCCTACGC 57.647 50.000 2.82 0.00 38.77 4.42
3262 6144 0.527565 TAACGTTCCAGTCCTACGCC 59.472 55.000 2.82 0.00 38.77 5.68
3263 6145 1.466025 AACGTTCCAGTCCTACGCCA 61.466 55.000 0.00 0.00 38.77 5.69
3264 6146 1.445582 CGTTCCAGTCCTACGCCAC 60.446 63.158 0.00 0.00 0.00 5.01
3265 6147 1.079336 GTTCCAGTCCTACGCCACC 60.079 63.158 0.00 0.00 0.00 4.61
3266 6148 1.534476 TTCCAGTCCTACGCCACCA 60.534 57.895 0.00 0.00 0.00 4.17
3267 6149 0.907704 TTCCAGTCCTACGCCACCAT 60.908 55.000 0.00 0.00 0.00 3.55
3268 6150 1.144057 CCAGTCCTACGCCACCATC 59.856 63.158 0.00 0.00 0.00 3.51
3269 6151 1.144057 CAGTCCTACGCCACCATCC 59.856 63.158 0.00 0.00 0.00 3.51
3270 6152 1.305802 AGTCCTACGCCACCATCCA 60.306 57.895 0.00 0.00 0.00 3.41
3271 6153 0.907704 AGTCCTACGCCACCATCCAA 60.908 55.000 0.00 0.00 0.00 3.53
3272 6154 0.035820 GTCCTACGCCACCATCCAAA 60.036 55.000 0.00 0.00 0.00 3.28
3326 6208 4.703897 GCATTACTGCTGATTAGTACCCA 58.296 43.478 0.00 0.00 45.32 4.51
3352 6234 8.217799 AGCTTATAAGAAACTAATGCATACCCA 58.782 33.333 16.85 0.00 0.00 4.51
3420 6625 8.806146 ACATGCTATTTTGTATCTTTGGAAACT 58.194 29.630 0.00 0.00 0.00 2.66
3597 6802 8.798748 ATATCGAAGACAACCGTATTCTTTAG 57.201 34.615 0.00 0.00 42.51 1.85
3602 6809 8.866956 CGAAGACAACCGTATTCTTTAGTTTAT 58.133 33.333 0.00 0.00 40.48 1.40
3782 6989 5.195001 GCTAATGAGTTCTAGCTAGCAGT 57.805 43.478 18.83 8.27 38.01 4.40
3783 6990 6.320494 GCTAATGAGTTCTAGCTAGCAGTA 57.680 41.667 18.83 10.31 38.01 2.74
3784 6991 6.740110 GCTAATGAGTTCTAGCTAGCAGTAA 58.260 40.000 18.83 1.43 38.01 2.24
3785 6992 6.639279 GCTAATGAGTTCTAGCTAGCAGTAAC 59.361 42.308 18.83 16.28 38.01 2.50
3786 6993 6.531503 AATGAGTTCTAGCTAGCAGTAACA 57.468 37.500 18.83 10.81 0.00 2.41
3787 6994 5.977489 TGAGTTCTAGCTAGCAGTAACAA 57.023 39.130 18.83 7.31 0.00 2.83
3788 6995 5.710984 TGAGTTCTAGCTAGCAGTAACAAC 58.289 41.667 18.83 12.58 0.00 3.32
3789 6996 5.243060 TGAGTTCTAGCTAGCAGTAACAACA 59.757 40.000 18.83 16.17 0.00 3.33
3790 6997 5.715070 AGTTCTAGCTAGCAGTAACAACAG 58.285 41.667 18.83 0.00 0.00 3.16
3791 6998 5.244178 AGTTCTAGCTAGCAGTAACAACAGT 59.756 40.000 18.83 0.00 0.00 3.55
3792 6999 5.060662 TCTAGCTAGCAGTAACAACAGTG 57.939 43.478 18.83 0.00 0.00 3.66
3793 7000 2.417719 AGCTAGCAGTAACAACAGTGC 58.582 47.619 18.83 0.00 43.83 4.40
3805 7012 1.583054 AACAGTGCGTTGAAGAGTCC 58.417 50.000 0.00 0.00 36.12 3.85
3806 7013 0.249911 ACAGTGCGTTGAAGAGTCCC 60.250 55.000 0.00 0.00 0.00 4.46
3807 7014 0.249868 CAGTGCGTTGAAGAGTCCCA 60.250 55.000 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 99 9.826574 GGTCCAATATGAACAGTACTTGTATTA 57.173 33.333 0.00 0.00 39.73 0.98
173 180 6.233434 TCATCTATGTATGGATTGGACTTGC 58.767 40.000 0.00 0.00 0.00 4.01
212 222 7.118101 TCCAATGTTAAACACGTATTGAGGTAC 59.882 37.037 6.54 0.00 32.05 3.34
276 286 1.078918 CTCCTCTTGCGTGGATGCA 60.079 57.895 0.00 0.00 44.61 3.96
360 370 1.501582 CCAAGCCCTAGCCTCTAGTT 58.498 55.000 0.00 0.00 41.25 2.24
368 378 1.704007 ATCTGGAGCCAAGCCCTAGC 61.704 60.000 0.00 0.00 40.32 3.42
402 412 2.036992 GCACATTTTTGGATGGTGGTGA 59.963 45.455 0.00 0.00 0.00 4.02
413 1753 5.812127 GCCTATAGAAAAGGGCACATTTTTG 59.188 40.000 0.00 0.00 43.59 2.44
419 1759 3.620488 CAAGCCTATAGAAAAGGGCACA 58.380 45.455 0.00 0.00 46.23 4.57
554 1900 5.832060 TGGGGAGATAAACACTAGCTAGTAC 59.168 44.000 25.63 12.53 34.13 2.73
555 1901 5.832060 GTGGGGAGATAAACACTAGCTAGTA 59.168 44.000 25.63 11.22 34.13 1.82
556 1902 4.650131 GTGGGGAGATAAACACTAGCTAGT 59.350 45.833 20.95 20.95 36.90 2.57
557 1903 4.649674 TGTGGGGAGATAAACACTAGCTAG 59.350 45.833 19.44 19.44 35.02 3.42
575 1921 5.560966 AAAGATACAAAATAGCGTGTGGG 57.439 39.130 0.00 0.00 0.00 4.61
607 1953 7.042335 AGCGGAGTAATATTAGGATGCATTAC 58.958 38.462 0.00 0.00 35.18 1.89
771 2167 8.464404 ACAATTGTCATCTATATTATGGCATGC 58.536 33.333 9.90 9.90 38.64 4.06
863 2290 9.817365 CATGCATTTATCTTAAGATAGAAACCG 57.183 33.333 21.40 13.30 38.18 4.44
1018 2517 8.289939 AGAACTCGTTGGTCTAAAGATATACA 57.710 34.615 0.00 0.00 41.74 2.29
1063 2563 4.718961 TGGCTCAAGCTAGAACTCTTTTT 58.281 39.130 1.46 0.00 41.70 1.94
1064 2564 4.357918 TGGCTCAAGCTAGAACTCTTTT 57.642 40.909 1.46 0.00 41.70 2.27
1066 2566 4.467795 TGTATGGCTCAAGCTAGAACTCTT 59.532 41.667 1.46 0.00 41.70 2.85
1067 2567 4.026744 TGTATGGCTCAAGCTAGAACTCT 58.973 43.478 1.46 0.00 41.70 3.24
1068 2568 4.392921 TGTATGGCTCAAGCTAGAACTC 57.607 45.455 1.46 0.00 41.70 3.01
1069 2569 4.653341 AGATGTATGGCTCAAGCTAGAACT 59.347 41.667 1.46 0.00 41.70 3.01
1070 2570 4.749099 CAGATGTATGGCTCAAGCTAGAAC 59.251 45.833 1.46 0.00 41.70 3.01
1071 2571 4.202295 CCAGATGTATGGCTCAAGCTAGAA 60.202 45.833 1.46 0.00 41.70 2.10
1072 2572 3.323115 CCAGATGTATGGCTCAAGCTAGA 59.677 47.826 1.46 0.00 41.70 2.43
1073 2573 3.323115 TCCAGATGTATGGCTCAAGCTAG 59.677 47.826 1.46 0.00 40.41 3.42
1074 2574 3.070159 GTCCAGATGTATGGCTCAAGCTA 59.930 47.826 1.46 0.00 40.41 3.32
1075 2575 2.121948 TCCAGATGTATGGCTCAAGCT 58.878 47.619 1.46 0.00 40.41 3.74
1132 2632 3.254060 CCTTTCGTAGATGGACACACAG 58.746 50.000 0.00 0.00 35.04 3.66
1153 2653 1.002087 CTACCTGAACTCACACCCACC 59.998 57.143 0.00 0.00 0.00 4.61
1171 2671 5.194473 AGATCACTAGAACTCACACCCTA 57.806 43.478 0.00 0.00 0.00 3.53
1234 2750 5.006358 GCTGTAATCATTACCCGTGTAGTTG 59.994 44.000 5.05 0.00 35.25 3.16
1257 2773 6.404074 CCAGATGACTTTGAAACTCTTATGGC 60.404 42.308 2.83 0.00 0.00 4.40
1272 2788 3.006967 AGACTAACAACGCCAGATGACTT 59.993 43.478 0.00 0.00 0.00 3.01
1360 2876 9.061610 CGTTAACTTGCAAGTAAAATATCCTTG 57.938 33.333 31.31 8.77 38.57 3.61
1361 2877 7.753580 GCGTTAACTTGCAAGTAAAATATCCTT 59.246 33.333 31.31 14.55 38.57 3.36
1362 2878 7.248437 GCGTTAACTTGCAAGTAAAATATCCT 58.752 34.615 31.31 15.27 38.57 3.24
1363 2879 6.193959 CGCGTTAACTTGCAAGTAAAATATCC 59.806 38.462 31.31 15.01 38.57 2.59
1364 2880 6.739550 ACGCGTTAACTTGCAAGTAAAATATC 59.260 34.615 31.31 17.00 38.57 1.63
1365 2881 6.604930 ACGCGTTAACTTGCAAGTAAAATAT 58.395 32.000 31.31 17.41 38.57 1.28
1366 2882 5.988092 ACGCGTTAACTTGCAAGTAAAATA 58.012 33.333 31.31 17.45 38.57 1.40
1367 2883 4.851010 ACGCGTTAACTTGCAAGTAAAAT 58.149 34.783 31.31 18.50 38.57 1.82
1368 2884 4.275838 ACGCGTTAACTTGCAAGTAAAA 57.724 36.364 31.31 23.98 38.57 1.52
1369 2885 3.948196 ACGCGTTAACTTGCAAGTAAA 57.052 38.095 31.31 19.82 38.57 2.01
1370 2886 4.050553 ACTACGCGTTAACTTGCAAGTAA 58.949 39.130 31.31 21.09 38.57 2.24
1371 2887 3.641648 ACTACGCGTTAACTTGCAAGTA 58.358 40.909 31.31 15.19 38.57 2.24
1372 2888 2.476821 ACTACGCGTTAACTTGCAAGT 58.523 42.857 26.36 26.36 42.04 3.16
1373 2889 3.515071 AACTACGCGTTAACTTGCAAG 57.485 42.857 24.84 24.84 33.05 4.01
1381 2897 4.566360 GGGCTAATGTTAACTACGCGTTAA 59.434 41.667 20.78 7.54 43.79 2.01
1382 2898 4.111916 GGGCTAATGTTAACTACGCGTTA 58.888 43.478 20.78 0.00 37.05 3.18
1529 3046 7.519970 CGCAAAAACTTATGTGTAAGGAGAAGT 60.520 37.037 0.88 0.00 41.33 3.01
1530 3047 6.797033 CGCAAAAACTTATGTGTAAGGAGAAG 59.203 38.462 0.88 0.00 41.33 2.85
1531 3048 6.483974 TCGCAAAAACTTATGTGTAAGGAGAA 59.516 34.615 0.88 0.00 41.33 2.87
1532 3049 5.992829 TCGCAAAAACTTATGTGTAAGGAGA 59.007 36.000 0.88 0.00 41.33 3.71
1533 3050 6.236017 TCGCAAAAACTTATGTGTAAGGAG 57.764 37.500 0.88 0.00 41.33 3.69
1534 3051 6.483974 TCTTCGCAAAAACTTATGTGTAAGGA 59.516 34.615 0.88 0.00 41.33 3.36
1535 3052 6.664515 TCTTCGCAAAAACTTATGTGTAAGG 58.335 36.000 0.88 0.00 41.33 2.69
1536 3053 7.572759 TCTCTTCGCAAAAACTTATGTGTAAG 58.427 34.615 0.00 0.00 42.45 2.34
1546 3063 5.239306 TGAATGTCATCTCTTCGCAAAAACT 59.761 36.000 0.00 0.00 0.00 2.66
1547 3064 5.340667 GTGAATGTCATCTCTTCGCAAAAAC 59.659 40.000 0.00 0.00 31.41 2.43
1554 3071 6.659361 AGAATTGTGAATGTCATCTCTTCG 57.341 37.500 0.00 0.00 0.00 3.79
1657 3174 7.959651 GTCACTTGCTTGACAAAGATTACATAG 59.040 37.037 8.32 0.00 44.62 2.23
1659 3176 6.672147 GTCACTTGCTTGACAAAGATTACAT 58.328 36.000 8.32 0.00 44.62 2.29
1749 3279 0.532862 ACTTCACCTCTTGCACCGTG 60.533 55.000 0.00 0.00 0.00 4.94
1750 3280 1.045407 TACTTCACCTCTTGCACCGT 58.955 50.000 0.00 0.00 0.00 4.83
2037 3797 2.234661 CTCTGTGCCATCTGAGTTGGTA 59.765 50.000 10.97 3.89 36.57 3.25
2085 3847 0.242825 CGTACTCTGTGGCTTCCGAA 59.757 55.000 0.00 0.00 0.00 4.30
2093 3856 0.094901 CTCGTCGTCGTACTCTGTGG 59.905 60.000 1.33 0.00 38.33 4.17
2118 3881 0.897863 GTTGCAGTGGTTGGGGCATA 60.898 55.000 0.00 0.00 35.98 3.14
2288 5139 3.398353 GACCGCTTCCTCTCCGACG 62.398 68.421 0.00 0.00 0.00 5.12
2337 5188 1.326213 CCGACAGCTCCTCCATCTGT 61.326 60.000 0.00 0.00 43.06 3.41
2339 5190 0.754957 CTCCGACAGCTCCTCCATCT 60.755 60.000 0.00 0.00 0.00 2.90
2499 5350 2.002586 CCAACAGTAGATGAGGTTGCG 58.997 52.381 0.00 0.00 39.33 4.85
2503 5354 1.825474 CGGTCCAACAGTAGATGAGGT 59.175 52.381 0.00 0.00 0.00 3.85
2599 5451 1.304381 AGCCGAATGTTGCCATGGT 60.304 52.632 14.67 0.00 0.00 3.55
2640 5492 2.507407 AAAACATCCCACGGTAGCAT 57.493 45.000 0.00 0.00 0.00 3.79
2648 5527 0.388520 GCAGCCGAAAAACATCCCAC 60.389 55.000 0.00 0.00 0.00 4.61
2740 5620 3.504021 CATCTCACGGATGGATCGG 57.496 57.895 0.00 0.00 45.85 4.18
2770 5650 2.834505 CAATGCCCATGACCCCGG 60.835 66.667 0.00 0.00 0.00 5.73
2888 5770 0.666913 CCTCGATATGAACCGTCCGT 59.333 55.000 0.00 0.00 0.00 4.69
2940 5822 1.803334 CCACGAAAATCGAGGTTGGA 58.197 50.000 6.78 0.00 43.93 3.53
2955 5837 3.988385 CGGATTGATCGCGCCACG 61.988 66.667 0.00 0.00 45.62 4.94
2956 5838 2.871427 GACGGATTGATCGCGCCAC 61.871 63.158 0.00 0.00 0.00 5.01
2957 5839 2.584970 GACGGATTGATCGCGCCA 60.585 61.111 0.00 0.00 0.00 5.69
2958 5840 3.338676 GGACGGATTGATCGCGCC 61.339 66.667 0.00 0.00 0.00 6.53
2959 5841 3.692367 CGGACGGATTGATCGCGC 61.692 66.667 0.00 0.00 0.00 6.86
2960 5842 2.278596 ACGGACGGATTGATCGCG 60.279 61.111 0.00 0.00 0.00 5.87
2961 5843 2.237751 CCACGGACGGATTGATCGC 61.238 63.158 0.00 0.00 0.00 4.58
2962 5844 1.591594 CCCACGGACGGATTGATCG 60.592 63.158 0.00 0.00 0.00 3.69
2963 5845 0.393077 ATCCCACGGACGGATTGATC 59.607 55.000 0.00 0.00 36.71 2.92
2964 5846 0.106708 CATCCCACGGACGGATTGAT 59.893 55.000 0.00 0.00 38.08 2.57
2965 5847 1.261938 ACATCCCACGGACGGATTGA 61.262 55.000 0.00 0.00 38.08 2.57
2966 5848 0.810031 GACATCCCACGGACGGATTG 60.810 60.000 0.00 0.00 38.08 2.67
2967 5849 1.261938 TGACATCCCACGGACGGATT 61.262 55.000 0.00 0.00 38.08 3.01
2968 5850 1.684391 TGACATCCCACGGACGGAT 60.684 57.895 0.00 0.00 40.94 4.18
2969 5851 2.283316 TGACATCCCACGGACGGA 60.283 61.111 0.00 0.00 32.98 4.69
2970 5852 2.125673 GTGACATCCCACGGACGG 60.126 66.667 0.00 0.00 32.98 4.79
2971 5853 0.601576 TTTGTGACATCCCACGGACG 60.602 55.000 0.00 0.00 39.80 4.79
2972 5854 0.872388 GTTTGTGACATCCCACGGAC 59.128 55.000 0.00 0.00 39.80 4.79
2973 5855 0.250553 GGTTTGTGACATCCCACGGA 60.251 55.000 0.00 0.00 39.80 4.69
2974 5856 0.250727 AGGTTTGTGACATCCCACGG 60.251 55.000 4.21 0.00 39.80 4.94
2975 5857 0.874390 CAGGTTTGTGACATCCCACG 59.126 55.000 4.21 0.00 39.80 4.94
2976 5858 1.880027 GACAGGTTTGTGACATCCCAC 59.120 52.381 4.21 0.00 37.76 4.61
2977 5859 1.492599 TGACAGGTTTGTGACATCCCA 59.507 47.619 4.21 0.00 37.76 4.37
2978 5860 2.270352 TGACAGGTTTGTGACATCCC 57.730 50.000 4.19 0.00 37.76 3.85
2979 5861 2.554032 CCTTGACAGGTTTGTGACATCC 59.446 50.000 0.00 0.00 37.76 3.51
2980 5862 3.904136 CCTTGACAGGTTTGTGACATC 57.096 47.619 0.00 0.00 37.76 3.06
2992 5874 0.606401 AATGCCCACGACCTTGACAG 60.606 55.000 0.00 0.00 0.00 3.51
2993 5875 0.888736 CAATGCCCACGACCTTGACA 60.889 55.000 0.00 0.00 0.00 3.58
2994 5876 1.875963 CAATGCCCACGACCTTGAC 59.124 57.895 0.00 0.00 0.00 3.18
2995 5877 1.971167 GCAATGCCCACGACCTTGA 60.971 57.895 0.00 0.00 0.00 3.02
2996 5878 2.267351 TGCAATGCCCACGACCTTG 61.267 57.895 1.53 0.00 0.00 3.61
2997 5879 2.115052 TGCAATGCCCACGACCTT 59.885 55.556 1.53 0.00 0.00 3.50
2998 5880 2.672996 GTGCAATGCCCACGACCT 60.673 61.111 1.53 0.00 0.00 3.85
3003 5885 1.372872 GGAAACGTGCAATGCCCAC 60.373 57.895 1.53 0.00 0.00 4.61
3004 5886 2.569354 GGGAAACGTGCAATGCCCA 61.569 57.895 1.53 0.00 35.63 5.36
3005 5887 1.815817 AAGGGAAACGTGCAATGCCC 61.816 55.000 1.53 3.62 35.79 5.36
3006 5888 0.885196 TAAGGGAAACGTGCAATGCC 59.115 50.000 1.53 0.00 0.00 4.40
3007 5889 2.939460 ATAAGGGAAACGTGCAATGC 57.061 45.000 0.00 0.00 0.00 3.56
3008 5890 3.692101 TGGTATAAGGGAAACGTGCAATG 59.308 43.478 0.00 0.00 0.00 2.82
3009 5891 3.945285 CTGGTATAAGGGAAACGTGCAAT 59.055 43.478 0.00 0.00 0.00 3.56
3010 5892 3.008157 TCTGGTATAAGGGAAACGTGCAA 59.992 43.478 0.00 0.00 0.00 4.08
3011 5893 2.568062 TCTGGTATAAGGGAAACGTGCA 59.432 45.455 0.00 0.00 0.00 4.57
3012 5894 3.255969 TCTGGTATAAGGGAAACGTGC 57.744 47.619 0.00 0.00 0.00 5.34
3013 5895 7.852971 TTTATTCTGGTATAAGGGAAACGTG 57.147 36.000 0.00 0.00 0.00 4.49
3014 5896 8.269317 TCATTTATTCTGGTATAAGGGAAACGT 58.731 33.333 0.00 0.00 0.00 3.99
3015 5897 8.671384 TCATTTATTCTGGTATAAGGGAAACG 57.329 34.615 0.00 0.00 0.00 3.60
3017 5899 9.640952 CCTTCATTTATTCTGGTATAAGGGAAA 57.359 33.333 0.00 0.00 0.00 3.13
3018 5900 8.787818 ACCTTCATTTATTCTGGTATAAGGGAA 58.212 33.333 0.00 0.00 36.19 3.97
3019 5901 8.217799 CACCTTCATTTATTCTGGTATAAGGGA 58.782 37.037 0.00 0.00 36.19 4.20
3020 5902 8.217799 TCACCTTCATTTATTCTGGTATAAGGG 58.782 37.037 0.00 0.00 36.19 3.95
3021 5903 9.627123 TTCACCTTCATTTATTCTGGTATAAGG 57.373 33.333 0.00 0.00 37.55 2.69
3025 5907 9.753674 TTCTTTCACCTTCATTTATTCTGGTAT 57.246 29.630 0.00 0.00 0.00 2.73
3026 5908 9.581289 TTTCTTTCACCTTCATTTATTCTGGTA 57.419 29.630 0.00 0.00 0.00 3.25
3027 5909 8.477419 TTTCTTTCACCTTCATTTATTCTGGT 57.523 30.769 0.00 0.00 0.00 4.00
3028 5910 9.362539 CATTTCTTTCACCTTCATTTATTCTGG 57.637 33.333 0.00 0.00 0.00 3.86
3035 5917 9.889128 TTTTTCTCATTTCTTTCACCTTCATTT 57.111 25.926 0.00 0.00 0.00 2.32
3037 5919 9.702494 GATTTTTCTCATTTCTTTCACCTTCAT 57.298 29.630 0.00 0.00 0.00 2.57
3038 5920 8.143835 GGATTTTTCTCATTTCTTTCACCTTCA 58.856 33.333 0.00 0.00 0.00 3.02
3039 5921 7.600375 GGGATTTTTCTCATTTCTTTCACCTTC 59.400 37.037 0.00 0.00 0.00 3.46
3040 5922 7.071071 TGGGATTTTTCTCATTTCTTTCACCTT 59.929 33.333 0.00 0.00 0.00 3.50
3041 5923 6.554605 TGGGATTTTTCTCATTTCTTTCACCT 59.445 34.615 0.00 0.00 0.00 4.00
3042 5924 6.758254 TGGGATTTTTCTCATTTCTTTCACC 58.242 36.000 0.00 0.00 0.00 4.02
3043 5925 8.837788 ATTGGGATTTTTCTCATTTCTTTCAC 57.162 30.769 0.00 0.00 0.00 3.18
3044 5926 9.275398 CAATTGGGATTTTTCTCATTTCTTTCA 57.725 29.630 0.00 0.00 0.00 2.69
3045 5927 8.232513 GCAATTGGGATTTTTCTCATTTCTTTC 58.767 33.333 7.72 0.00 0.00 2.62
3046 5928 7.720515 TGCAATTGGGATTTTTCTCATTTCTTT 59.279 29.630 7.72 0.00 0.00 2.52
3047 5929 7.173735 GTGCAATTGGGATTTTTCTCATTTCTT 59.826 33.333 7.72 0.00 0.00 2.52
3048 5930 6.652062 GTGCAATTGGGATTTTTCTCATTTCT 59.348 34.615 7.72 0.00 0.00 2.52
3049 5931 6.401367 CGTGCAATTGGGATTTTTCTCATTTC 60.401 38.462 7.72 0.00 0.00 2.17
3050 5932 5.409214 CGTGCAATTGGGATTTTTCTCATTT 59.591 36.000 7.72 0.00 0.00 2.32
3051 5933 4.931002 CGTGCAATTGGGATTTTTCTCATT 59.069 37.500 7.72 0.00 0.00 2.57
3052 5934 4.497300 CGTGCAATTGGGATTTTTCTCAT 58.503 39.130 7.72 0.00 0.00 2.90
3053 5935 3.860378 GCGTGCAATTGGGATTTTTCTCA 60.860 43.478 7.72 0.00 0.00 3.27
3054 5936 2.667969 GCGTGCAATTGGGATTTTTCTC 59.332 45.455 7.72 0.00 0.00 2.87
3055 5937 2.687370 GCGTGCAATTGGGATTTTTCT 58.313 42.857 7.72 0.00 0.00 2.52
3056 5938 1.389784 CGCGTGCAATTGGGATTTTTC 59.610 47.619 7.72 0.00 0.00 2.29
3057 5939 1.427435 CGCGTGCAATTGGGATTTTT 58.573 45.000 7.72 0.00 0.00 1.94
3058 5940 0.389687 CCGCGTGCAATTGGGATTTT 60.390 50.000 4.92 0.00 0.00 1.82
3059 5941 1.215117 CCGCGTGCAATTGGGATTT 59.785 52.632 4.92 0.00 0.00 2.17
3060 5942 1.976474 ACCGCGTGCAATTGGGATT 60.976 52.632 4.92 0.00 0.00 3.01
3061 5943 2.361104 ACCGCGTGCAATTGGGAT 60.361 55.556 4.92 0.00 0.00 3.85
3062 5944 3.361158 CACCGCGTGCAATTGGGA 61.361 61.111 4.92 0.00 0.00 4.37
3080 5962 1.135699 GCATGGATGCGTGCTTTTCG 61.136 55.000 22.74 0.00 44.67 3.46
3081 5963 2.657336 GCATGGATGCGTGCTTTTC 58.343 52.632 22.74 0.00 44.67 2.29
3082 5964 4.895854 GCATGGATGCGTGCTTTT 57.104 50.000 22.74 0.00 44.67 2.27
3091 5973 1.100510 CAGGTTCCTGTGCATGGATG 58.899 55.000 11.42 4.79 33.09 3.51
3092 5974 0.033796 CCAGGTTCCTGTGCATGGAT 60.034 55.000 16.33 0.00 38.68 3.41
3093 5975 1.133181 TCCAGGTTCCTGTGCATGGA 61.133 55.000 16.33 7.24 42.34 3.41
3094 5976 0.033796 ATCCAGGTTCCTGTGCATGG 60.034 55.000 16.33 0.00 37.84 3.66
3095 5977 1.386533 GATCCAGGTTCCTGTGCATG 58.613 55.000 16.33 2.58 32.56 4.06
3096 5978 0.107508 CGATCCAGGTTCCTGTGCAT 60.108 55.000 16.33 6.52 32.56 3.96
3097 5979 1.296392 CGATCCAGGTTCCTGTGCA 59.704 57.895 16.33 2.24 32.56 4.57
3098 5980 1.450312 CCGATCCAGGTTCCTGTGC 60.450 63.158 16.33 5.68 32.56 4.57
3099 5981 0.108138 GTCCGATCCAGGTTCCTGTG 60.108 60.000 16.33 8.94 32.56 3.66
3100 5982 0.544357 TGTCCGATCCAGGTTCCTGT 60.544 55.000 16.33 0.30 32.56 4.00
3101 5983 0.176680 CTGTCCGATCCAGGTTCCTG 59.823 60.000 11.52 11.52 0.00 3.86
3102 5984 0.252284 ACTGTCCGATCCAGGTTCCT 60.252 55.000 3.03 0.00 34.16 3.36
3103 5985 0.613777 AACTGTCCGATCCAGGTTCC 59.386 55.000 3.03 0.00 34.16 3.62
3104 5986 1.275291 TGAACTGTCCGATCCAGGTTC 59.725 52.381 3.03 0.00 34.16 3.62
3105 5987 1.348064 TGAACTGTCCGATCCAGGTT 58.652 50.000 3.03 0.00 34.16 3.50
3106 5988 1.573108 ATGAACTGTCCGATCCAGGT 58.427 50.000 3.03 0.00 34.16 4.00
3107 5989 4.060900 CAATATGAACTGTCCGATCCAGG 58.939 47.826 3.03 0.00 34.16 4.45
3108 5990 4.948847 TCAATATGAACTGTCCGATCCAG 58.051 43.478 0.00 0.00 36.01 3.86
3109 5991 4.202253 CCTCAATATGAACTGTCCGATCCA 60.202 45.833 0.00 0.00 0.00 3.41
3110 5992 4.310769 CCTCAATATGAACTGTCCGATCC 58.689 47.826 0.00 0.00 0.00 3.36
3111 5993 3.743396 GCCTCAATATGAACTGTCCGATC 59.257 47.826 0.00 0.00 0.00 3.69
3112 5994 3.134623 TGCCTCAATATGAACTGTCCGAT 59.865 43.478 0.00 0.00 0.00 4.18
3113 5995 2.499693 TGCCTCAATATGAACTGTCCGA 59.500 45.455 0.00 0.00 0.00 4.55
3114 5996 2.905075 TGCCTCAATATGAACTGTCCG 58.095 47.619 0.00 0.00 0.00 4.79
3115 5997 3.496130 CGATGCCTCAATATGAACTGTCC 59.504 47.826 0.00 0.00 0.00 4.02
3116 5998 3.496130 CCGATGCCTCAATATGAACTGTC 59.504 47.826 0.00 0.00 0.00 3.51
3117 5999 3.470709 CCGATGCCTCAATATGAACTGT 58.529 45.455 0.00 0.00 0.00 3.55
3118 6000 2.810274 CCCGATGCCTCAATATGAACTG 59.190 50.000 0.00 0.00 0.00 3.16
3119 6001 2.439507 ACCCGATGCCTCAATATGAACT 59.560 45.455 0.00 0.00 0.00 3.01
3120 6002 2.808543 GACCCGATGCCTCAATATGAAC 59.191 50.000 0.00 0.00 0.00 3.18
3121 6003 2.437651 TGACCCGATGCCTCAATATGAA 59.562 45.455 0.00 0.00 0.00 2.57
3122 6004 2.046292 TGACCCGATGCCTCAATATGA 58.954 47.619 0.00 0.00 0.00 2.15
3123 6005 2.549064 TGACCCGATGCCTCAATATG 57.451 50.000 0.00 0.00 0.00 1.78
3124 6006 2.705658 TCTTGACCCGATGCCTCAATAT 59.294 45.455 0.00 0.00 0.00 1.28
3125 6007 2.103094 CTCTTGACCCGATGCCTCAATA 59.897 50.000 0.00 0.00 0.00 1.90
3126 6008 0.911769 TCTTGACCCGATGCCTCAAT 59.088 50.000 0.00 0.00 0.00 2.57
3127 6009 0.250234 CTCTTGACCCGATGCCTCAA 59.750 55.000 0.00 0.00 0.00 3.02
3128 6010 0.614697 TCTCTTGACCCGATGCCTCA 60.615 55.000 0.00 0.00 0.00 3.86
3129 6011 0.537188 TTCTCTTGACCCGATGCCTC 59.463 55.000 0.00 0.00 0.00 4.70
3130 6012 0.539051 CTTCTCTTGACCCGATGCCT 59.461 55.000 0.00 0.00 0.00 4.75
3131 6013 1.092345 GCTTCTCTTGACCCGATGCC 61.092 60.000 0.00 0.00 0.00 4.40
3132 6014 0.107945 AGCTTCTCTTGACCCGATGC 60.108 55.000 0.00 0.00 0.00 3.91
3133 6015 1.205655 TGAGCTTCTCTTGACCCGATG 59.794 52.381 0.00 0.00 0.00 3.84
3134 6016 1.561643 TGAGCTTCTCTTGACCCGAT 58.438 50.000 0.00 0.00 0.00 4.18
3135 6017 1.561643 ATGAGCTTCTCTTGACCCGA 58.438 50.000 0.00 0.00 0.00 5.14
3136 6018 2.393271 AATGAGCTTCTCTTGACCCG 57.607 50.000 0.00 0.00 0.00 5.28
3137 6019 7.716998 TGATAAATAATGAGCTTCTCTTGACCC 59.283 37.037 0.00 0.00 0.00 4.46
3138 6020 8.555361 GTGATAAATAATGAGCTTCTCTTGACC 58.445 37.037 0.00 0.00 0.00 4.02
3139 6021 9.102757 TGTGATAAATAATGAGCTTCTCTTGAC 57.897 33.333 0.00 0.00 0.00 3.18
3140 6022 9.102757 GTGTGATAAATAATGAGCTTCTCTTGA 57.897 33.333 0.00 0.00 0.00 3.02
3141 6023 9.107177 AGTGTGATAAATAATGAGCTTCTCTTG 57.893 33.333 0.00 0.00 0.00 3.02
3142 6024 9.323985 GAGTGTGATAAATAATGAGCTTCTCTT 57.676 33.333 0.00 0.00 0.00 2.85
3143 6025 7.930865 GGAGTGTGATAAATAATGAGCTTCTCT 59.069 37.037 0.00 0.00 0.00 3.10
3144 6026 7.712639 TGGAGTGTGATAAATAATGAGCTTCTC 59.287 37.037 0.00 0.00 0.00 2.87
3145 6027 7.568349 TGGAGTGTGATAAATAATGAGCTTCT 58.432 34.615 0.00 0.00 0.00 2.85
3146 6028 7.792374 TGGAGTGTGATAAATAATGAGCTTC 57.208 36.000 0.00 0.00 0.00 3.86
3147 6029 7.067494 GGTTGGAGTGTGATAAATAATGAGCTT 59.933 37.037 0.00 0.00 0.00 3.74
3148 6030 6.543831 GGTTGGAGTGTGATAAATAATGAGCT 59.456 38.462 0.00 0.00 0.00 4.09
3149 6031 6.543831 AGGTTGGAGTGTGATAAATAATGAGC 59.456 38.462 0.00 0.00 0.00 4.26
3150 6032 7.227512 GGAGGTTGGAGTGTGATAAATAATGAG 59.772 40.741 0.00 0.00 0.00 2.90
3151 6033 7.054124 GGAGGTTGGAGTGTGATAAATAATGA 58.946 38.462 0.00 0.00 0.00 2.57
3152 6034 6.828273 TGGAGGTTGGAGTGTGATAAATAATG 59.172 38.462 0.00 0.00 0.00 1.90
3153 6035 6.969043 TGGAGGTTGGAGTGTGATAAATAAT 58.031 36.000 0.00 0.00 0.00 1.28
3154 6036 6.381498 TGGAGGTTGGAGTGTGATAAATAA 57.619 37.500 0.00 0.00 0.00 1.40
3155 6037 6.575244 ATGGAGGTTGGAGTGTGATAAATA 57.425 37.500 0.00 0.00 0.00 1.40
3156 6038 4.927267 TGGAGGTTGGAGTGTGATAAAT 57.073 40.909 0.00 0.00 0.00 1.40
3157 6039 4.927267 ATGGAGGTTGGAGTGTGATAAA 57.073 40.909 0.00 0.00 0.00 1.40
3158 6040 4.927267 AATGGAGGTTGGAGTGTGATAA 57.073 40.909 0.00 0.00 0.00 1.75
3159 6041 4.141711 GCTAATGGAGGTTGGAGTGTGATA 60.142 45.833 0.00 0.00 0.00 2.15
3160 6042 3.370953 GCTAATGGAGGTTGGAGTGTGAT 60.371 47.826 0.00 0.00 0.00 3.06
3161 6043 2.027192 GCTAATGGAGGTTGGAGTGTGA 60.027 50.000 0.00 0.00 0.00 3.58
3162 6044 2.359900 GCTAATGGAGGTTGGAGTGTG 58.640 52.381 0.00 0.00 0.00 3.82
3163 6045 1.282157 GGCTAATGGAGGTTGGAGTGT 59.718 52.381 0.00 0.00 0.00 3.55
3164 6046 1.408822 GGGCTAATGGAGGTTGGAGTG 60.409 57.143 0.00 0.00 0.00 3.51
3165 6047 0.919710 GGGCTAATGGAGGTTGGAGT 59.080 55.000 0.00 0.00 0.00 3.85
3166 6048 0.179045 CGGGCTAATGGAGGTTGGAG 60.179 60.000 0.00 0.00 0.00 3.86
3167 6049 0.912487 ACGGGCTAATGGAGGTTGGA 60.912 55.000 0.00 0.00 0.00 3.53
3168 6050 0.034477 AACGGGCTAATGGAGGTTGG 60.034 55.000 0.00 0.00 0.00 3.77
3171 6053 0.988832 TGAAACGGGCTAATGGAGGT 59.011 50.000 0.00 0.00 0.00 3.85
3209 6091 2.950874 GCCTAGCCTCCAGTGACTAAGA 60.951 54.545 0.00 0.00 0.00 2.10
3246 6128 1.445582 GTGGCGTAGGACTGGAACG 60.446 63.158 0.00 0.00 39.55 3.95
3247 6129 1.079336 GGTGGCGTAGGACTGGAAC 60.079 63.158 0.00 0.00 0.00 3.62
3248 6130 0.907704 ATGGTGGCGTAGGACTGGAA 60.908 55.000 0.00 0.00 0.00 3.53
3249 6131 1.305802 ATGGTGGCGTAGGACTGGA 60.306 57.895 0.00 0.00 0.00 3.86
3250 6132 1.144057 GATGGTGGCGTAGGACTGG 59.856 63.158 0.00 0.00 0.00 4.00
3251 6133 1.144057 GGATGGTGGCGTAGGACTG 59.856 63.158 0.00 0.00 0.00 3.51
3252 6134 0.907704 TTGGATGGTGGCGTAGGACT 60.908 55.000 0.00 0.00 0.00 3.85
3253 6135 0.035820 TTTGGATGGTGGCGTAGGAC 60.036 55.000 0.00 0.00 0.00 3.85
3254 6136 0.693622 TTTTGGATGGTGGCGTAGGA 59.306 50.000 0.00 0.00 0.00 2.94
3255 6137 1.201414 GTTTTTGGATGGTGGCGTAGG 59.799 52.381 0.00 0.00 0.00 3.18
3256 6138 1.135803 CGTTTTTGGATGGTGGCGTAG 60.136 52.381 0.00 0.00 0.00 3.51
3257 6139 0.875728 CGTTTTTGGATGGTGGCGTA 59.124 50.000 0.00 0.00 0.00 4.42
3258 6140 1.104577 ACGTTTTTGGATGGTGGCGT 61.105 50.000 0.00 0.00 0.00 5.68
3259 6141 0.662970 CACGTTTTTGGATGGTGGCG 60.663 55.000 0.00 0.00 0.00 5.69
3260 6142 0.319469 CCACGTTTTTGGATGGTGGC 60.319 55.000 0.00 0.00 41.37 5.01
3261 6143 3.883997 CCACGTTTTTGGATGGTGG 57.116 52.632 0.00 0.00 41.81 4.61
3262 6144 0.319469 GGCCACGTTTTTGGATGGTG 60.319 55.000 0.00 0.00 39.24 4.17
3263 6145 0.469144 AGGCCACGTTTTTGGATGGT 60.469 50.000 5.01 0.00 39.24 3.55
3264 6146 0.678950 AAGGCCACGTTTTTGGATGG 59.321 50.000 5.01 0.00 39.24 3.51
3265 6147 2.134346 CAAAGGCCACGTTTTTGGATG 58.866 47.619 5.01 0.00 39.24 3.51
3266 6148 1.540146 GCAAAGGCCACGTTTTTGGAT 60.540 47.619 5.01 0.00 39.24 3.41
3267 6149 0.179097 GCAAAGGCCACGTTTTTGGA 60.179 50.000 5.01 0.00 39.24 3.53
3268 6150 0.179086 AGCAAAGGCCACGTTTTTGG 60.179 50.000 5.01 0.58 42.56 3.28
3269 6151 2.124122 GTAGCAAAGGCCACGTTTTTG 58.876 47.619 5.01 7.85 42.56 2.44
3270 6152 1.751924 TGTAGCAAAGGCCACGTTTTT 59.248 42.857 5.01 0.00 42.56 1.94
3271 6153 1.336755 CTGTAGCAAAGGCCACGTTTT 59.663 47.619 5.01 0.00 42.56 2.43
3272 6154 0.951558 CTGTAGCAAAGGCCACGTTT 59.048 50.000 5.01 0.00 42.56 3.60
3326 6208 8.217799 TGGGTATGCATTAGTTTCTTATAAGCT 58.782 33.333 3.54 2.31 0.00 3.74
3352 6234 8.414778 AGCTAGTACGCATTAGTTTCTTAAGAT 58.585 33.333 5.89 0.00 0.00 2.40
3432 6637 9.817809 ATTTGACGAAAGAGCAGTAATATTAGA 57.182 29.630 0.00 0.00 0.00 2.10
3602 6809 8.097662 TCAGGATACAAATTGTGTGTGTGTATA 58.902 33.333 9.15 0.00 41.89 1.47
3604 6811 6.292150 TCAGGATACAAATTGTGTGTGTGTA 58.708 36.000 9.15 0.00 41.89 2.90
3760 6967 5.195001 ACTGCTAGCTAGAACTCATTAGC 57.805 43.478 25.15 7.91 41.99 3.09
3761 6968 7.708051 TGTTACTGCTAGCTAGAACTCATTAG 58.292 38.462 25.15 2.58 0.00 1.73
3762 6969 7.640597 TGTTACTGCTAGCTAGAACTCATTA 57.359 36.000 25.15 8.26 0.00 1.90
3763 6970 6.531503 TGTTACTGCTAGCTAGAACTCATT 57.468 37.500 25.15 9.19 0.00 2.57
3764 6971 6.071334 TGTTGTTACTGCTAGCTAGAACTCAT 60.071 38.462 25.15 5.41 0.00 2.90
3765 6972 5.243060 TGTTGTTACTGCTAGCTAGAACTCA 59.757 40.000 25.15 16.97 0.00 3.41
3766 6973 5.710984 TGTTGTTACTGCTAGCTAGAACTC 58.289 41.667 25.15 15.06 0.00 3.01
3767 6974 5.244178 ACTGTTGTTACTGCTAGCTAGAACT 59.756 40.000 25.15 5.51 0.00 3.01
3768 6975 5.346281 CACTGTTGTTACTGCTAGCTAGAAC 59.654 44.000 25.15 18.37 0.00 3.01
3769 6976 5.470368 CACTGTTGTTACTGCTAGCTAGAA 58.530 41.667 25.15 13.71 0.00 2.10
3770 6977 4.618460 GCACTGTTGTTACTGCTAGCTAGA 60.618 45.833 25.15 8.65 0.00 2.43
3771 6978 3.614616 GCACTGTTGTTACTGCTAGCTAG 59.385 47.826 16.84 16.84 0.00 3.42
3772 6979 3.585862 GCACTGTTGTTACTGCTAGCTA 58.414 45.455 17.23 0.00 0.00 3.32
3773 6980 2.417719 GCACTGTTGTTACTGCTAGCT 58.582 47.619 17.23 0.00 0.00 3.32
3774 6981 1.126846 CGCACTGTTGTTACTGCTAGC 59.873 52.381 8.10 8.10 0.00 3.42
3775 6982 2.404215 ACGCACTGTTGTTACTGCTAG 58.596 47.619 0.00 0.00 0.00 3.42
3776 6983 2.519377 ACGCACTGTTGTTACTGCTA 57.481 45.000 0.00 0.00 0.00 3.49
3777 6984 1.663695 AACGCACTGTTGTTACTGCT 58.336 45.000 0.00 0.00 40.00 4.24
3786 6993 1.583054 GGACTCTTCAACGCACTGTT 58.417 50.000 0.00 0.00 43.09 3.16
3787 6994 0.249911 GGGACTCTTCAACGCACTGT 60.250 55.000 0.00 0.00 0.00 3.55
3788 6995 0.249868 TGGGACTCTTCAACGCACTG 60.250 55.000 0.00 0.00 0.00 3.66
3789 6996 2.133195 TGGGACTCTTCAACGCACT 58.867 52.632 0.00 0.00 0.00 4.40
3790 6997 4.771127 TGGGACTCTTCAACGCAC 57.229 55.556 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.