Multiple sequence alignment - TraesCS1B01G105600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G105600 chr1B 100.000 2336 0 0 1 2336 117380609 117378274 0.000000e+00 4314.0
1 TraesCS1B01G105600 chr1B 94.000 50 2 1 2172 2220 613341317 613341268 8.950000e-10 75.0
2 TraesCS1B01G105600 chr3B 94.428 1687 77 7 1 1675 383485222 383486903 0.000000e+00 2579.0
3 TraesCS1B01G105600 chr6B 86.342 1684 214 11 1 1680 545251022 545252693 0.000000e+00 1821.0
4 TraesCS1B01G105600 chr6B 83.449 1154 163 26 534 1680 643939209 643938077 0.000000e+00 1048.0
5 TraesCS1B01G105600 chr6B 90.323 62 5 1 2176 2237 298832069 298832129 1.920000e-11 80.5
6 TraesCS1B01G105600 chr7B 83.574 1662 252 17 36 1690 425399643 425397996 0.000000e+00 1537.0
7 TraesCS1B01G105600 chr7B 77.403 593 126 7 716 1303 687898079 687898668 1.720000e-91 346.0
8 TraesCS1B01G105600 chr3D 82.033 1692 273 24 1 1680 321922623 321924295 0.000000e+00 1411.0
9 TraesCS1B01G105600 chr1D 80.744 1693 299 24 1 1684 97210582 97208908 0.000000e+00 1295.0
10 TraesCS1B01G105600 chr1D 82.365 499 52 20 1694 2177 73980948 73980471 3.620000e-108 401.0
11 TraesCS1B01G105600 chr1D 82.632 380 41 14 1815 2176 119296255 119296627 1.740000e-81 313.0
12 TraesCS1B01G105600 chr1D 84.746 177 22 5 1505 1679 342824740 342824913 3.090000e-39 172.0
13 TraesCS1B01G105600 chr1D 97.436 39 1 0 2175 2213 18988700 18988662 1.500000e-07 67.6
14 TraesCS1B01G105600 chr5B 79.681 1191 234 8 1 1187 557035707 557036893 0.000000e+00 852.0
15 TraesCS1B01G105600 chr5B 97.436 39 1 0 2175 2213 16528080 16528042 1.500000e-07 67.6
16 TraesCS1B01G105600 chr1A 90.959 365 22 9 1824 2180 73351436 73351075 4.510000e-132 481.0
17 TraesCS1B01G105600 chr1A 76.639 488 82 27 1206 1679 573392201 573392670 8.340000e-60 241.0
18 TraesCS1B01G105600 chr1A 92.647 136 3 6 1680 1810 73351670 73351537 3.060000e-44 189.0
19 TraesCS1B01G105600 chr1A 84.615 169 21 5 1513 1679 527888010 527887845 1.860000e-36 163.0
20 TraesCS1B01G105600 chr5A 73.399 1327 330 21 1 1316 648908919 648907605 7.550000e-130 473.0
21 TraesCS1B01G105600 chr5A 90.909 55 5 0 2175 2229 475591366 475591420 8.950000e-10 75.0
22 TraesCS1B01G105600 chr5A 95.455 44 1 1 2177 2219 84455815 84455858 4.170000e-08 69.4
23 TraesCS1B01G105600 chr2D 84.350 377 40 12 1815 2178 180885079 180884709 3.690000e-93 351.0
24 TraesCS1B01G105600 chr2D 84.900 351 31 15 1830 2165 382441006 382441349 3.720000e-88 335.0
25 TraesCS1B01G105600 chr2D 97.500 40 1 0 2175 2214 48609250 48609289 4.170000e-08 69.4
26 TraesCS1B01G105600 chr7A 84.136 353 37 11 1816 2154 56979917 56980264 8.050000e-85 324.0
27 TraesCS1B01G105600 chr7D 83.898 354 38 16 1825 2167 605156252 605155907 1.040000e-83 320.0
28 TraesCS1B01G105600 chr6D 83.898 354 31 19 1825 2167 418458465 418458803 4.850000e-82 315.0
29 TraesCS1B01G105600 chr6D 100.000 41 0 0 2173 2213 61599236 61599196 2.490000e-10 76.8
30 TraesCS1B01G105600 chr6A 82.967 364 45 11 1817 2167 608489682 608489323 1.740000e-81 313.0
31 TraesCS1B01G105600 chr5D 78.076 447 74 21 1244 1680 546357774 546358206 6.400000e-66 261.0
32 TraesCS1B01G105600 chrUn 97.436 39 1 0 2175 2213 419598026 419598064 1.500000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G105600 chr1B 117378274 117380609 2335 True 4314 4314 100.000 1 2336 1 chr1B.!!$R1 2335
1 TraesCS1B01G105600 chr3B 383485222 383486903 1681 False 2579 2579 94.428 1 1675 1 chr3B.!!$F1 1674
2 TraesCS1B01G105600 chr6B 545251022 545252693 1671 False 1821 1821 86.342 1 1680 1 chr6B.!!$F2 1679
3 TraesCS1B01G105600 chr6B 643938077 643939209 1132 True 1048 1048 83.449 534 1680 1 chr6B.!!$R1 1146
4 TraesCS1B01G105600 chr7B 425397996 425399643 1647 True 1537 1537 83.574 36 1690 1 chr7B.!!$R1 1654
5 TraesCS1B01G105600 chr7B 687898079 687898668 589 False 346 346 77.403 716 1303 1 chr7B.!!$F1 587
6 TraesCS1B01G105600 chr3D 321922623 321924295 1672 False 1411 1411 82.033 1 1680 1 chr3D.!!$F1 1679
7 TraesCS1B01G105600 chr1D 97208908 97210582 1674 True 1295 1295 80.744 1 1684 1 chr1D.!!$R3 1683
8 TraesCS1B01G105600 chr5B 557035707 557036893 1186 False 852 852 79.681 1 1187 1 chr5B.!!$F1 1186
9 TraesCS1B01G105600 chr1A 73351075 73351670 595 True 335 481 91.803 1680 2180 2 chr1A.!!$R2 500
10 TraesCS1B01G105600 chr5A 648907605 648908919 1314 True 473 473 73.399 1 1316 1 chr5A.!!$R1 1315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 384 0.75085 GAATAGCTCGGTGGCCACTA 59.249 55.0 33.91 21.44 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 2334 0.0297 GTTGTACGGGCGTTTGCTTT 59.97 50.0 0.0 0.0 42.25 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.705441 TCGGTTTCTTAAATGCTGTGATTCT 59.295 36.000 0.00 0.00 0.00 2.40
41 42 1.000938 GATTCTTGGATCGGCAATGCC 60.001 52.381 15.52 15.52 46.75 4.40
196 198 4.569865 GGTGTGGAGGTATGGGAAAGAAAT 60.570 45.833 0.00 0.00 0.00 2.17
245 247 7.846066 AGAGTGTGCAGATCTAGAAATAAAGT 58.154 34.615 0.00 0.00 0.00 2.66
382 384 0.750850 GAATAGCTCGGTGGCCACTA 59.249 55.000 33.91 21.44 0.00 2.74
388 390 1.138266 GCTCGGTGGCCACTATTAAGA 59.862 52.381 33.91 20.74 0.00 2.10
527 531 2.704190 GGATCTCATCCCCCACTCTA 57.296 55.000 0.00 0.00 43.88 2.43
532 536 3.784178 TCTCATCCCCCACTCTATGATC 58.216 50.000 0.00 0.00 0.00 2.92
593 597 8.806146 GGATGATACTATTGCCCAACATAAATT 58.194 33.333 0.00 0.00 0.00 1.82
813 818 7.645058 TTTTAAATGGATCTGGAAGGCTAAG 57.355 36.000 0.00 0.00 0.00 2.18
1390 1399 0.610174 TCTGGAGCTGATCGTGCTTT 59.390 50.000 13.16 0.00 41.30 3.51
1392 1401 1.129998 CTGGAGCTGATCGTGCTTTTG 59.870 52.381 13.16 4.58 41.30 2.44
1484 1496 9.554395 TTGATGTTGATGTTAGACTTCTTTGTA 57.446 29.630 0.00 0.00 0.00 2.41
1535 1548 0.250597 GTTTTCGCCCCACAGTAGGT 60.251 55.000 0.00 0.00 0.00 3.08
1547 1560 2.805671 CACAGTAGGTGTTTCGATTGCA 59.194 45.455 0.00 0.00 42.75 4.08
1618 1646 5.514834 CCTTTCCCTTTTCACATACTCCTGA 60.515 44.000 0.00 0.00 0.00 3.86
1643 1671 5.475564 ACTTGGTTGTATTTCCGTTATGCTT 59.524 36.000 0.00 0.00 0.00 3.91
1720 1751 3.453559 CCAACAGGGTACACGGATC 57.546 57.895 1.03 0.00 0.00 3.36
1721 1752 0.611200 CCAACAGGGTACACGGATCA 59.389 55.000 1.03 0.00 0.00 2.92
1722 1753 1.209504 CCAACAGGGTACACGGATCAT 59.790 52.381 1.03 0.00 0.00 2.45
1723 1754 2.279741 CAACAGGGTACACGGATCATG 58.720 52.381 1.03 0.00 0.00 3.07
1724 1755 1.568504 ACAGGGTACACGGATCATGT 58.431 50.000 1.03 7.01 0.00 3.21
1725 1756 1.480954 ACAGGGTACACGGATCATGTC 59.519 52.381 1.03 0.00 0.00 3.06
1727 1758 2.168521 CAGGGTACACGGATCATGTCTT 59.831 50.000 5.20 0.00 0.00 3.01
1728 1759 2.168521 AGGGTACACGGATCATGTCTTG 59.831 50.000 5.20 0.00 0.00 3.02
1785 1818 8.557029 CCTTTATTACTTCCGATTCACCATTAC 58.443 37.037 0.00 0.00 0.00 1.89
1795 1828 4.214119 CGATTCACCATTACATCATCCACC 59.786 45.833 0.00 0.00 0.00 4.61
1806 1839 5.215252 ACATCATCCACCGGATTTACTAG 57.785 43.478 9.46 0.00 39.79 2.57
1810 1843 4.341235 TCATCCACCGGATTTACTAGAGTG 59.659 45.833 9.46 0.00 39.79 3.51
1811 1844 3.972133 TCCACCGGATTTACTAGAGTGA 58.028 45.455 9.46 0.00 0.00 3.41
1812 1845 3.952323 TCCACCGGATTTACTAGAGTGAG 59.048 47.826 9.46 0.00 0.00 3.51
1813 1846 3.068307 CCACCGGATTTACTAGAGTGAGG 59.932 52.174 9.46 0.00 0.00 3.86
1814 1847 3.700038 CACCGGATTTACTAGAGTGAGGT 59.300 47.826 9.46 0.00 0.00 3.85
1816 1849 4.159879 ACCGGATTTACTAGAGTGAGGTTG 59.840 45.833 9.46 0.00 0.00 3.77
1817 1850 4.159879 CCGGATTTACTAGAGTGAGGTTGT 59.840 45.833 0.00 0.00 0.00 3.32
1818 1851 5.103000 CGGATTTACTAGAGTGAGGTTGTG 58.897 45.833 0.00 0.00 0.00 3.33
1819 1852 4.870991 GGATTTACTAGAGTGAGGTTGTGC 59.129 45.833 0.00 0.00 0.00 4.57
1820 1853 3.570926 TTACTAGAGTGAGGTTGTGCG 57.429 47.619 0.00 0.00 0.00 5.34
1822 1855 0.244994 CTAGAGTGAGGTTGTGCGCT 59.755 55.000 9.73 0.00 0.00 5.92
1832 1952 1.226632 TTGTGCGCTGTTGCTGTTG 60.227 52.632 9.73 0.00 36.97 3.33
1844 1964 3.186909 GTTGCTGTTGTTGGGTTTCTTC 58.813 45.455 0.00 0.00 0.00 2.87
2022 2148 2.096218 GGCGGATGTCGATATCTTTTGC 60.096 50.000 19.85 17.16 42.43 3.68
2023 2149 2.802816 GCGGATGTCGATATCTTTTGCT 59.197 45.455 19.85 0.00 42.43 3.91
2093 2219 5.796424 ATGCCCCTTATATTTTGAAGCTG 57.204 39.130 0.00 0.00 0.00 4.24
2112 2238 7.615365 TGAAGCTGATGGAATATTTAGTTTGGT 59.385 33.333 0.00 0.00 0.00 3.67
2170 2297 9.929722 TTTATTTATAGTGCATGATTTGACGAC 57.070 29.630 0.00 0.00 0.00 4.34
2175 2302 3.189287 AGTGCATGATTTGACGACCTTTC 59.811 43.478 0.00 0.00 0.00 2.62
2176 2303 3.189287 GTGCATGATTTGACGACCTTTCT 59.811 43.478 0.00 0.00 0.00 2.52
2177 2304 3.436704 TGCATGATTTGACGACCTTTCTC 59.563 43.478 0.00 0.00 0.00 2.87
2178 2305 3.484229 GCATGATTTGACGACCTTTCTCG 60.484 47.826 0.00 0.00 39.68 4.04
2179 2306 3.653539 TGATTTGACGACCTTTCTCGA 57.346 42.857 0.00 0.00 37.11 4.04
2181 2308 4.373527 TGATTTGACGACCTTTCTCGAAA 58.626 39.130 0.00 0.00 37.11 3.46
2182 2309 4.210537 TGATTTGACGACCTTTCTCGAAAC 59.789 41.667 0.00 0.00 37.11 2.78
2183 2310 2.875087 TGACGACCTTTCTCGAAACA 57.125 45.000 0.00 0.00 37.11 2.83
2184 2311 2.739292 TGACGACCTTTCTCGAAACAG 58.261 47.619 0.00 0.00 37.11 3.16
2185 2312 2.059541 GACGACCTTTCTCGAAACAGG 58.940 52.381 0.00 0.00 37.11 4.00
2186 2313 0.790814 CGACCTTTCTCGAAACAGGC 59.209 55.000 0.00 0.00 35.58 4.85
2187 2314 1.605712 CGACCTTTCTCGAAACAGGCT 60.606 52.381 0.00 0.00 35.58 4.58
2188 2315 2.495084 GACCTTTCTCGAAACAGGCTT 58.505 47.619 0.00 0.00 0.00 4.35
2189 2316 2.879026 GACCTTTCTCGAAACAGGCTTT 59.121 45.455 0.00 0.00 0.00 3.51
2190 2317 2.879026 ACCTTTCTCGAAACAGGCTTTC 59.121 45.455 0.00 0.00 0.00 2.62
2195 2322 1.497722 CGAAACAGGCTTTCGCTCC 59.502 57.895 8.25 0.00 43.52 4.70
2196 2323 1.497722 GAAACAGGCTTTCGCTCCG 59.502 57.895 0.00 0.00 36.09 4.63
2197 2324 2.514505 GAAACAGGCTTTCGCTCCGC 62.515 60.000 0.00 0.00 36.09 5.54
2198 2325 3.537206 AACAGGCTTTCGCTCCGCT 62.537 57.895 0.00 0.00 36.09 5.52
2199 2326 2.743928 CAGGCTTTCGCTCCGCTT 60.744 61.111 0.00 0.00 36.09 4.68
2200 2327 2.032681 AGGCTTTCGCTCCGCTTT 59.967 55.556 0.00 0.00 36.09 3.51
2201 2328 1.019278 CAGGCTTTCGCTCCGCTTTA 61.019 55.000 0.00 0.00 36.09 1.85
2202 2329 0.107654 AGGCTTTCGCTCCGCTTTAT 60.108 50.000 0.00 0.00 36.09 1.40
2203 2330 1.138266 AGGCTTTCGCTCCGCTTTATA 59.862 47.619 0.00 0.00 36.09 0.98
2204 2331 1.527311 GGCTTTCGCTCCGCTTTATAG 59.473 52.381 0.00 0.00 36.09 1.31
2205 2332 2.470821 GCTTTCGCTCCGCTTTATAGA 58.529 47.619 0.00 0.00 0.00 1.98
2206 2333 3.060602 GCTTTCGCTCCGCTTTATAGAT 58.939 45.455 0.00 0.00 0.00 1.98
2207 2334 4.235360 GCTTTCGCTCCGCTTTATAGATA 58.765 43.478 0.00 0.00 0.00 1.98
2208 2335 4.684703 GCTTTCGCTCCGCTTTATAGATAA 59.315 41.667 0.00 0.00 0.00 1.75
2209 2336 5.176958 GCTTTCGCTCCGCTTTATAGATAAA 59.823 40.000 0.00 0.00 0.00 1.40
2210 2337 9.402736 GGCTTTCGCTCCGCTTTATAGATAAAG 62.403 44.444 14.96 14.96 42.50 1.85
2220 2347 5.412526 TTTATAGATAAAGCAAACGCCCG 57.587 39.130 0.00 0.00 0.00 6.13
2221 2348 2.389962 TAGATAAAGCAAACGCCCGT 57.610 45.000 0.00 0.00 0.00 5.28
2222 2349 2.389962 AGATAAAGCAAACGCCCGTA 57.610 45.000 0.00 0.00 0.00 4.02
2223 2350 2.004733 AGATAAAGCAAACGCCCGTAC 58.995 47.619 0.00 0.00 0.00 3.67
2224 2351 1.733360 GATAAAGCAAACGCCCGTACA 59.267 47.619 0.00 0.00 0.00 2.90
2225 2352 1.590932 TAAAGCAAACGCCCGTACAA 58.409 45.000 0.00 0.00 0.00 2.41
2226 2353 0.029700 AAAGCAAACGCCCGTACAAC 59.970 50.000 0.00 0.00 0.00 3.32
2227 2354 1.788067 AAGCAAACGCCCGTACAACC 61.788 55.000 0.00 0.00 0.00 3.77
2228 2355 2.544698 GCAAACGCCCGTACAACCA 61.545 57.895 0.00 0.00 0.00 3.67
2229 2356 1.280444 CAAACGCCCGTACAACCAC 59.720 57.895 0.00 0.00 0.00 4.16
2230 2357 1.146707 AAACGCCCGTACAACCACT 59.853 52.632 0.00 0.00 0.00 4.00
2231 2358 0.464193 AAACGCCCGTACAACCACTT 60.464 50.000 0.00 0.00 0.00 3.16
2232 2359 0.881600 AACGCCCGTACAACCACTTC 60.882 55.000 0.00 0.00 0.00 3.01
2233 2360 2.030958 CGCCCGTACAACCACTTCC 61.031 63.158 0.00 0.00 0.00 3.46
2234 2361 1.673337 GCCCGTACAACCACTTCCC 60.673 63.158 0.00 0.00 0.00 3.97
2235 2362 1.756024 CCCGTACAACCACTTCCCA 59.244 57.895 0.00 0.00 0.00 4.37
2236 2363 0.108963 CCCGTACAACCACTTCCCAA 59.891 55.000 0.00 0.00 0.00 4.12
2237 2364 1.232119 CCGTACAACCACTTCCCAAC 58.768 55.000 0.00 0.00 0.00 3.77
2238 2365 1.232119 CGTACAACCACTTCCCAACC 58.768 55.000 0.00 0.00 0.00 3.77
2239 2366 1.475392 CGTACAACCACTTCCCAACCA 60.475 52.381 0.00 0.00 0.00 3.67
2240 2367 2.227194 GTACAACCACTTCCCAACCAG 58.773 52.381 0.00 0.00 0.00 4.00
2241 2368 0.923358 ACAACCACTTCCCAACCAGA 59.077 50.000 0.00 0.00 0.00 3.86
2242 2369 1.133792 ACAACCACTTCCCAACCAGAG 60.134 52.381 0.00 0.00 0.00 3.35
2243 2370 1.133792 CAACCACTTCCCAACCAGAGT 60.134 52.381 0.00 0.00 0.00 3.24
2244 2371 0.765510 ACCACTTCCCAACCAGAGTC 59.234 55.000 0.00 0.00 0.00 3.36
2245 2372 0.764890 CCACTTCCCAACCAGAGTCA 59.235 55.000 0.00 0.00 0.00 3.41
2246 2373 1.352352 CCACTTCCCAACCAGAGTCAT 59.648 52.381 0.00 0.00 0.00 3.06
2247 2374 2.571653 CCACTTCCCAACCAGAGTCATA 59.428 50.000 0.00 0.00 0.00 2.15
2248 2375 3.009033 CCACTTCCCAACCAGAGTCATAA 59.991 47.826 0.00 0.00 0.00 1.90
2249 2376 4.506625 CCACTTCCCAACCAGAGTCATAAA 60.507 45.833 0.00 0.00 0.00 1.40
2250 2377 5.070001 CACTTCCCAACCAGAGTCATAAAA 58.930 41.667 0.00 0.00 0.00 1.52
2251 2378 5.182001 CACTTCCCAACCAGAGTCATAAAAG 59.818 44.000 0.00 0.00 0.00 2.27
2252 2379 5.073144 ACTTCCCAACCAGAGTCATAAAAGA 59.927 40.000 0.00 0.00 0.00 2.52
2253 2380 5.576563 TCCCAACCAGAGTCATAAAAGAA 57.423 39.130 0.00 0.00 0.00 2.52
2254 2381 5.947663 TCCCAACCAGAGTCATAAAAGAAA 58.052 37.500 0.00 0.00 0.00 2.52
2255 2382 6.369629 TCCCAACCAGAGTCATAAAAGAAAA 58.630 36.000 0.00 0.00 0.00 2.29
2256 2383 7.010160 TCCCAACCAGAGTCATAAAAGAAAAT 58.990 34.615 0.00 0.00 0.00 1.82
2257 2384 7.508977 TCCCAACCAGAGTCATAAAAGAAAATT 59.491 33.333 0.00 0.00 0.00 1.82
2258 2385 7.599998 CCCAACCAGAGTCATAAAAGAAAATTG 59.400 37.037 0.00 0.00 0.00 2.32
2259 2386 8.143835 CCAACCAGAGTCATAAAAGAAAATTGT 58.856 33.333 0.00 0.00 0.00 2.71
2260 2387 9.185192 CAACCAGAGTCATAAAAGAAAATTGTC 57.815 33.333 0.00 0.00 0.00 3.18
2261 2388 7.584987 ACCAGAGTCATAAAAGAAAATTGTCG 58.415 34.615 0.00 0.00 0.00 4.35
2262 2389 7.023575 CCAGAGTCATAAAAGAAAATTGTCGG 58.976 38.462 0.00 0.00 0.00 4.79
2263 2390 7.023575 CAGAGTCATAAAAGAAAATTGTCGGG 58.976 38.462 0.00 0.00 0.00 5.14
2264 2391 6.151144 AGAGTCATAAAAGAAAATTGTCGGGG 59.849 38.462 0.00 0.00 0.00 5.73
2265 2392 4.862574 GTCATAAAAGAAAATTGTCGGGGC 59.137 41.667 0.00 0.00 0.00 5.80
2266 2393 2.831685 AAAAGAAAATTGTCGGGGCC 57.168 45.000 0.00 0.00 0.00 5.80
2267 2394 1.710816 AAAGAAAATTGTCGGGGCCA 58.289 45.000 4.39 0.00 0.00 5.36
2268 2395 1.937191 AAGAAAATTGTCGGGGCCAT 58.063 45.000 4.39 0.00 0.00 4.40
2269 2396 2.818751 AGAAAATTGTCGGGGCCATA 57.181 45.000 4.39 0.00 0.00 2.74
2270 2397 2.654863 AGAAAATTGTCGGGGCCATAG 58.345 47.619 4.39 0.00 0.00 2.23
2271 2398 1.067060 GAAAATTGTCGGGGCCATAGC 59.933 52.381 4.39 0.00 38.76 2.97
2272 2399 0.033601 AAATTGTCGGGGCCATAGCA 60.034 50.000 4.39 0.00 42.56 3.49
2273 2400 0.751643 AATTGTCGGGGCCATAGCAC 60.752 55.000 4.39 0.00 43.97 4.40
2281 2408 0.108662 GGGCCATAGCACAAACAAGC 60.109 55.000 4.39 0.00 44.19 4.01
2282 2409 0.108662 GGCCATAGCACAAACAAGCC 60.109 55.000 0.00 0.00 42.56 4.35
2283 2410 0.108662 GCCATAGCACAAACAAGCCC 60.109 55.000 0.00 0.00 39.53 5.19
2284 2411 1.255882 CCATAGCACAAACAAGCCCA 58.744 50.000 0.00 0.00 0.00 5.36
2285 2412 1.617850 CCATAGCACAAACAAGCCCAA 59.382 47.619 0.00 0.00 0.00 4.12
2286 2413 2.036992 CCATAGCACAAACAAGCCCAAA 59.963 45.455 0.00 0.00 0.00 3.28
2287 2414 3.306919 CCATAGCACAAACAAGCCCAAAT 60.307 43.478 0.00 0.00 0.00 2.32
2288 2415 2.243602 AGCACAAACAAGCCCAAATG 57.756 45.000 0.00 0.00 0.00 2.32
2289 2416 1.761784 AGCACAAACAAGCCCAAATGA 59.238 42.857 0.00 0.00 0.00 2.57
2290 2417 2.170187 AGCACAAACAAGCCCAAATGAA 59.830 40.909 0.00 0.00 0.00 2.57
2291 2418 2.941720 GCACAAACAAGCCCAAATGAAA 59.058 40.909 0.00 0.00 0.00 2.69
2292 2419 3.002553 GCACAAACAAGCCCAAATGAAAG 59.997 43.478 0.00 0.00 0.00 2.62
2293 2420 4.440880 CACAAACAAGCCCAAATGAAAGA 58.559 39.130 0.00 0.00 0.00 2.52
2294 2421 4.874966 CACAAACAAGCCCAAATGAAAGAA 59.125 37.500 0.00 0.00 0.00 2.52
2295 2422 5.528320 CACAAACAAGCCCAAATGAAAGAAT 59.472 36.000 0.00 0.00 0.00 2.40
2296 2423 6.705381 CACAAACAAGCCCAAATGAAAGAATA 59.295 34.615 0.00 0.00 0.00 1.75
2297 2424 7.226325 CACAAACAAGCCCAAATGAAAGAATAA 59.774 33.333 0.00 0.00 0.00 1.40
2298 2425 7.442062 ACAAACAAGCCCAAATGAAAGAATAAG 59.558 33.333 0.00 0.00 0.00 1.73
2299 2426 6.916360 ACAAGCCCAAATGAAAGAATAAGA 57.084 33.333 0.00 0.00 0.00 2.10
2300 2427 7.301868 ACAAGCCCAAATGAAAGAATAAGAA 57.698 32.000 0.00 0.00 0.00 2.52
2301 2428 7.734942 ACAAGCCCAAATGAAAGAATAAGAAA 58.265 30.769 0.00 0.00 0.00 2.52
2302 2429 7.657354 ACAAGCCCAAATGAAAGAATAAGAAAC 59.343 33.333 0.00 0.00 0.00 2.78
2303 2430 7.301868 AGCCCAAATGAAAGAATAAGAAACA 57.698 32.000 0.00 0.00 0.00 2.83
2304 2431 7.910584 AGCCCAAATGAAAGAATAAGAAACAT 58.089 30.769 0.00 0.00 0.00 2.71
2305 2432 9.034800 AGCCCAAATGAAAGAATAAGAAACATA 57.965 29.630 0.00 0.00 0.00 2.29
2306 2433 9.651913 GCCCAAATGAAAGAATAAGAAACATAA 57.348 29.630 0.00 0.00 0.00 1.90
2312 2439 9.875691 ATGAAAGAATAAGAAACATAAAAGGCC 57.124 29.630 0.00 0.00 0.00 5.19
2313 2440 8.865090 TGAAAGAATAAGAAACATAAAAGGCCA 58.135 29.630 5.01 0.00 0.00 5.36
2314 2441 9.140286 GAAAGAATAAGAAACATAAAAGGCCAC 57.860 33.333 5.01 0.00 0.00 5.01
2315 2442 7.170393 AGAATAAGAAACATAAAAGGCCACC 57.830 36.000 5.01 0.00 0.00 4.61
2316 2443 6.723977 AGAATAAGAAACATAAAAGGCCACCA 59.276 34.615 5.01 0.00 0.00 4.17
2317 2444 4.871933 AAGAAACATAAAAGGCCACCAG 57.128 40.909 5.01 0.00 0.00 4.00
2318 2445 3.165071 AGAAACATAAAAGGCCACCAGG 58.835 45.455 5.01 0.00 38.23 4.45
2319 2446 1.937191 AACATAAAAGGCCACCAGGG 58.063 50.000 5.01 0.00 40.85 4.45
2320 2447 0.041090 ACATAAAAGGCCACCAGGGG 59.959 55.000 5.01 0.00 37.04 4.79
2321 2448 0.334676 CATAAAAGGCCACCAGGGGA 59.665 55.000 5.01 0.00 37.04 4.81
2322 2449 1.089123 ATAAAAGGCCACCAGGGGAA 58.911 50.000 5.01 0.00 37.04 3.97
2323 2450 0.113580 TAAAAGGCCACCAGGGGAAC 59.886 55.000 5.01 0.00 37.04 3.62
2324 2451 1.664956 AAAAGGCCACCAGGGGAACT 61.665 55.000 5.01 0.00 37.04 3.01
2326 2453 3.580319 GGCCACCAGGGGAACTGT 61.580 66.667 0.00 0.00 46.06 3.55
2327 2454 2.034221 GCCACCAGGGGAACTGTC 59.966 66.667 0.00 0.00 46.06 3.51
2328 2455 2.829384 GCCACCAGGGGAACTGTCA 61.829 63.158 0.00 0.00 46.06 3.58
2329 2456 1.376466 CCACCAGGGGAACTGTCAG 59.624 63.158 0.00 0.00 46.06 3.51
2330 2457 1.127567 CCACCAGGGGAACTGTCAGA 61.128 60.000 6.91 0.00 46.06 3.27
2331 2458 0.322975 CACCAGGGGAACTGTCAGAG 59.677 60.000 6.91 0.00 46.06 3.35
2332 2459 0.191064 ACCAGGGGAACTGTCAGAGA 59.809 55.000 6.91 0.00 46.06 3.10
2333 2460 0.901124 CCAGGGGAACTGTCAGAGAG 59.099 60.000 6.91 0.00 46.06 3.20
2334 2461 0.248843 CAGGGGAACTGTCAGAGAGC 59.751 60.000 6.91 0.00 42.42 4.09
2335 2462 0.907230 AGGGGAACTGTCAGAGAGCC 60.907 60.000 6.91 1.99 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.890985 TGCTAGAGAGAGAAGAGTTTAGCAT 59.109 40.000 0.00 0.00 37.81 3.79
245 247 0.413037 ATCCTTGATGCCCAAACCCA 59.587 50.000 0.00 0.00 33.76 4.51
324 326 2.624838 CACAACATCTTGCCAAAGTCCT 59.375 45.455 0.00 0.00 34.78 3.85
327 329 2.624838 CCTCACAACATCTTGCCAAAGT 59.375 45.455 0.00 0.00 34.78 2.66
382 384 5.893824 GGGAATCATTGACCTTGGTCTTAAT 59.106 40.000 19.11 9.74 0.00 1.40
388 390 2.003072 AGGGGAATCATTGACCTTGGT 58.997 47.619 0.00 0.00 0.00 3.67
527 531 7.898100 TGCTAAAGAGGTCTGGATATAGATCAT 59.102 37.037 0.00 0.00 33.27 2.45
532 536 6.559810 CGATGCTAAAGAGGTCTGGATATAG 58.440 44.000 0.00 0.00 0.00 1.31
593 597 0.404040 CAAGCCCTTACCAACCCTCA 59.596 55.000 0.00 0.00 0.00 3.86
813 818 2.698855 TCTGGATCTTAACAGGCAGC 57.301 50.000 0.00 0.00 35.47 5.25
1365 1374 1.134848 ACGATCAGCTCCAGAAGAAGC 60.135 52.381 0.00 0.00 0.00 3.86
1390 1399 2.126228 CTAACGAGGTCCGCGCAA 60.126 61.111 15.52 2.30 43.32 4.85
1427 1439 4.380531 CAGAGGCGGAATAGCAGAATAAA 58.619 43.478 0.00 0.00 39.27 1.40
1484 1496 2.223803 AGGTCTCTCGACACCAAGAT 57.776 50.000 6.29 0.00 42.05 2.40
1486 1499 1.337260 CCAAGGTCTCTCGACACCAAG 60.337 57.143 6.29 0.00 42.05 3.61
1535 1548 2.483583 AAACGCTTGCAATCGAAACA 57.516 40.000 27.56 0.00 0.00 2.83
1547 1560 1.951602 GGAAACCCACTGTAAACGCTT 59.048 47.619 0.00 0.00 0.00 4.68
1606 1634 4.389374 ACAACCAAGTTCAGGAGTATGTG 58.611 43.478 0.00 0.00 0.00 3.21
1618 1646 5.475564 AGCATAACGGAAATACAACCAAGTT 59.524 36.000 0.00 0.00 0.00 2.66
1702 1730 0.611200 TGATCCGTGTACCCTGTTGG 59.389 55.000 0.00 0.00 41.37 3.77
1704 1732 1.906574 ACATGATCCGTGTACCCTGTT 59.093 47.619 0.00 0.00 31.23 3.16
1720 1751 4.685169 AGAAATTACGCCACAAGACATG 57.315 40.909 0.00 0.00 0.00 3.21
1721 1752 5.705609 AAAGAAATTACGCCACAAGACAT 57.294 34.783 0.00 0.00 0.00 3.06
1722 1753 5.527951 TGTAAAGAAATTACGCCACAAGACA 59.472 36.000 0.00 0.00 45.72 3.41
1723 1754 5.992729 TGTAAAGAAATTACGCCACAAGAC 58.007 37.500 0.00 0.00 45.72 3.01
1724 1755 6.428465 TCATGTAAAGAAATTACGCCACAAGA 59.572 34.615 0.00 0.00 45.72 3.02
1725 1756 6.607689 TCATGTAAAGAAATTACGCCACAAG 58.392 36.000 0.00 0.00 45.72 3.16
1727 1758 6.561737 TTCATGTAAAGAAATTACGCCACA 57.438 33.333 0.00 0.00 45.72 4.17
1728 1759 7.861176 TTTTCATGTAAAGAAATTACGCCAC 57.139 32.000 0.00 0.00 45.72 5.01
1785 1818 5.011125 ACTCTAGTAAATCCGGTGGATGATG 59.989 44.000 0.00 0.00 42.27 3.07
1795 1828 5.103000 CACAACCTCACTCTAGTAAATCCG 58.897 45.833 0.00 0.00 0.00 4.18
1806 1839 1.160329 AACAGCGCACAACCTCACTC 61.160 55.000 11.47 0.00 0.00 3.51
1810 1843 2.050985 GCAACAGCGCACAACCTC 60.051 61.111 11.47 0.00 0.00 3.85
1811 1844 2.516930 AGCAACAGCGCACAACCT 60.517 55.556 11.47 0.00 0.00 3.50
1812 1845 2.353839 CAGCAACAGCGCACAACC 60.354 61.111 11.47 0.00 0.00 3.77
1813 1846 1.226660 AACAGCAACAGCGCACAAC 60.227 52.632 11.47 0.00 0.00 3.32
1814 1847 1.226632 CAACAGCAACAGCGCACAA 60.227 52.632 11.47 0.00 0.00 3.33
1816 1849 1.226660 AACAACAGCAACAGCGCAC 60.227 52.632 11.47 0.00 0.00 5.34
1817 1850 1.226632 CAACAACAGCAACAGCGCA 60.227 52.632 11.47 0.00 0.00 6.09
1818 1851 1.945662 CCAACAACAGCAACAGCGC 60.946 57.895 0.00 0.00 0.00 5.92
1819 1852 1.299316 CCCAACAACAGCAACAGCG 60.299 57.895 0.00 0.00 0.00 5.18
1820 1853 0.175531 AACCCAACAACAGCAACAGC 59.824 50.000 0.00 0.00 0.00 4.40
1822 1855 2.175202 AGAAACCCAACAACAGCAACA 58.825 42.857 0.00 0.00 0.00 3.33
1996 2121 2.828520 AGATATCGACATCCGCCAGATT 59.171 45.455 0.00 0.00 38.37 2.40
2001 2127 2.096218 GCAAAAGATATCGACATCCGCC 60.096 50.000 0.00 0.00 38.37 6.13
2003 2129 4.302455 AGAGCAAAAGATATCGACATCCG 58.698 43.478 0.00 0.00 40.25 4.18
2090 2216 6.430451 CGACCAAACTAAATATTCCATCAGC 58.570 40.000 0.00 0.00 0.00 4.26
2093 2219 6.238648 CCACCGACCAAACTAAATATTCCATC 60.239 42.308 0.00 0.00 0.00 3.51
2112 2238 0.263468 TCCATCATCTACCCCACCGA 59.737 55.000 0.00 0.00 0.00 4.69
2154 2281 3.189287 AGAAAGGTCGTCAAATCATGCAC 59.811 43.478 0.00 0.00 0.00 4.57
2158 2285 4.188247 TCGAGAAAGGTCGTCAAATCAT 57.812 40.909 0.00 0.00 40.93 2.45
2167 2294 0.790814 GCCTGTTTCGAGAAAGGTCG 59.209 55.000 13.48 0.00 41.51 4.79
2169 2296 2.640316 AAGCCTGTTTCGAGAAAGGT 57.360 45.000 13.48 0.00 0.00 3.50
2170 2297 3.544356 GAAAGCCTGTTTCGAGAAAGG 57.456 47.619 7.85 7.85 0.00 3.11
2198 2325 4.877251 ACGGGCGTTTGCTTTATCTATAAA 59.123 37.500 0.00 0.00 42.25 1.40
2199 2326 4.444536 ACGGGCGTTTGCTTTATCTATAA 58.555 39.130 0.00 0.00 42.25 0.98
2200 2327 4.062677 ACGGGCGTTTGCTTTATCTATA 57.937 40.909 0.00 0.00 42.25 1.31
2201 2328 2.914059 ACGGGCGTTTGCTTTATCTAT 58.086 42.857 0.00 0.00 42.25 1.98
2202 2329 2.389962 ACGGGCGTTTGCTTTATCTA 57.610 45.000 0.00 0.00 42.25 1.98
2203 2330 2.004733 GTACGGGCGTTTGCTTTATCT 58.995 47.619 0.00 0.00 42.25 1.98
2204 2331 1.733360 TGTACGGGCGTTTGCTTTATC 59.267 47.619 0.00 0.00 42.25 1.75
2205 2332 1.810959 TGTACGGGCGTTTGCTTTAT 58.189 45.000 0.00 0.00 42.25 1.40
2206 2333 1.263752 GTTGTACGGGCGTTTGCTTTA 59.736 47.619 0.00 0.00 42.25 1.85
2207 2334 0.029700 GTTGTACGGGCGTTTGCTTT 59.970 50.000 0.00 0.00 42.25 3.51
2208 2335 1.650363 GTTGTACGGGCGTTTGCTT 59.350 52.632 0.00 0.00 42.25 3.91
2209 2336 2.255881 GGTTGTACGGGCGTTTGCT 61.256 57.895 0.00 0.00 42.25 3.91
2210 2337 2.253154 GGTTGTACGGGCGTTTGC 59.747 61.111 0.00 0.00 41.71 3.68
2211 2338 1.161563 AGTGGTTGTACGGGCGTTTG 61.162 55.000 0.00 0.00 0.00 2.93
2212 2339 0.464193 AAGTGGTTGTACGGGCGTTT 60.464 50.000 0.00 0.00 0.00 3.60
2213 2340 0.881600 GAAGTGGTTGTACGGGCGTT 60.882 55.000 0.00 0.00 0.00 4.84
2214 2341 1.301165 GAAGTGGTTGTACGGGCGT 60.301 57.895 0.00 0.00 0.00 5.68
2215 2342 2.030958 GGAAGTGGTTGTACGGGCG 61.031 63.158 0.00 0.00 0.00 6.13
2216 2343 1.673337 GGGAAGTGGTTGTACGGGC 60.673 63.158 0.00 0.00 0.00 6.13
2217 2344 0.108963 TTGGGAAGTGGTTGTACGGG 59.891 55.000 0.00 0.00 0.00 5.28
2218 2345 1.232119 GTTGGGAAGTGGTTGTACGG 58.768 55.000 0.00 0.00 0.00 4.02
2219 2346 1.232119 GGTTGGGAAGTGGTTGTACG 58.768 55.000 0.00 0.00 0.00 3.67
2220 2347 2.158726 TCTGGTTGGGAAGTGGTTGTAC 60.159 50.000 0.00 0.00 0.00 2.90
2221 2348 2.105821 CTCTGGTTGGGAAGTGGTTGTA 59.894 50.000 0.00 0.00 0.00 2.41
2222 2349 0.923358 TCTGGTTGGGAAGTGGTTGT 59.077 50.000 0.00 0.00 0.00 3.32
2223 2350 1.133792 ACTCTGGTTGGGAAGTGGTTG 60.134 52.381 0.00 0.00 0.00 3.77
2224 2351 1.143073 GACTCTGGTTGGGAAGTGGTT 59.857 52.381 0.00 0.00 0.00 3.67
2225 2352 0.765510 GACTCTGGTTGGGAAGTGGT 59.234 55.000 0.00 0.00 0.00 4.16
2226 2353 0.764890 TGACTCTGGTTGGGAAGTGG 59.235 55.000 0.00 0.00 0.00 4.00
2227 2354 2.867109 ATGACTCTGGTTGGGAAGTG 57.133 50.000 0.00 0.00 0.00 3.16
2228 2355 4.993705 TTTATGACTCTGGTTGGGAAGT 57.006 40.909 0.00 0.00 0.00 3.01
2229 2356 5.560724 TCTTTTATGACTCTGGTTGGGAAG 58.439 41.667 0.00 0.00 0.00 3.46
2230 2357 5.576563 TCTTTTATGACTCTGGTTGGGAA 57.423 39.130 0.00 0.00 0.00 3.97
2231 2358 5.576563 TTCTTTTATGACTCTGGTTGGGA 57.423 39.130 0.00 0.00 0.00 4.37
2232 2359 6.648879 TTTTCTTTTATGACTCTGGTTGGG 57.351 37.500 0.00 0.00 0.00 4.12
2233 2360 8.143835 ACAATTTTCTTTTATGACTCTGGTTGG 58.856 33.333 0.00 0.00 0.00 3.77
2234 2361 9.185192 GACAATTTTCTTTTATGACTCTGGTTG 57.815 33.333 0.00 0.00 0.00 3.77
2235 2362 8.076178 CGACAATTTTCTTTTATGACTCTGGTT 58.924 33.333 0.00 0.00 0.00 3.67
2236 2363 7.308589 CCGACAATTTTCTTTTATGACTCTGGT 60.309 37.037 0.00 0.00 0.00 4.00
2237 2364 7.023575 CCGACAATTTTCTTTTATGACTCTGG 58.976 38.462 0.00 0.00 0.00 3.86
2238 2365 7.023575 CCCGACAATTTTCTTTTATGACTCTG 58.976 38.462 0.00 0.00 0.00 3.35
2239 2366 6.151144 CCCCGACAATTTTCTTTTATGACTCT 59.849 38.462 0.00 0.00 0.00 3.24
2240 2367 6.322491 CCCCGACAATTTTCTTTTATGACTC 58.678 40.000 0.00 0.00 0.00 3.36
2241 2368 5.336451 GCCCCGACAATTTTCTTTTATGACT 60.336 40.000 0.00 0.00 0.00 3.41
2242 2369 4.862574 GCCCCGACAATTTTCTTTTATGAC 59.137 41.667 0.00 0.00 0.00 3.06
2243 2370 4.081917 GGCCCCGACAATTTTCTTTTATGA 60.082 41.667 0.00 0.00 0.00 2.15
2244 2371 4.180817 GGCCCCGACAATTTTCTTTTATG 58.819 43.478 0.00 0.00 0.00 1.90
2245 2372 3.835395 TGGCCCCGACAATTTTCTTTTAT 59.165 39.130 0.00 0.00 0.00 1.40
2246 2373 3.231818 TGGCCCCGACAATTTTCTTTTA 58.768 40.909 0.00 0.00 0.00 1.52
2247 2374 2.043227 TGGCCCCGACAATTTTCTTTT 58.957 42.857 0.00 0.00 0.00 2.27
2248 2375 1.710816 TGGCCCCGACAATTTTCTTT 58.289 45.000 0.00 0.00 0.00 2.52
2249 2376 1.937191 ATGGCCCCGACAATTTTCTT 58.063 45.000 0.00 0.00 0.00 2.52
2250 2377 2.654863 CTATGGCCCCGACAATTTTCT 58.345 47.619 0.00 0.00 0.00 2.52
2251 2378 1.067060 GCTATGGCCCCGACAATTTTC 59.933 52.381 0.00 0.00 0.00 2.29
2252 2379 1.111277 GCTATGGCCCCGACAATTTT 58.889 50.000 0.00 0.00 0.00 1.82
2253 2380 0.033601 TGCTATGGCCCCGACAATTT 60.034 50.000 0.00 0.00 37.74 1.82
2254 2381 0.751643 GTGCTATGGCCCCGACAATT 60.752 55.000 0.00 0.00 37.74 2.32
2255 2382 1.152963 GTGCTATGGCCCCGACAAT 60.153 57.895 0.00 0.00 37.74 2.71
2256 2383 2.130821 TTGTGCTATGGCCCCGACAA 62.131 55.000 0.00 0.00 37.74 3.18
2257 2384 2.130821 TTTGTGCTATGGCCCCGACA 62.131 55.000 0.00 0.00 37.74 4.35
2258 2385 1.377987 TTTGTGCTATGGCCCCGAC 60.378 57.895 0.00 0.00 37.74 4.79
2259 2386 1.377987 GTTTGTGCTATGGCCCCGA 60.378 57.895 0.00 0.00 37.74 5.14
2260 2387 1.247419 TTGTTTGTGCTATGGCCCCG 61.247 55.000 0.00 0.00 37.74 5.73
2261 2388 0.532115 CTTGTTTGTGCTATGGCCCC 59.468 55.000 0.00 0.00 37.74 5.80
2262 2389 0.108662 GCTTGTTTGTGCTATGGCCC 60.109 55.000 0.00 0.00 37.74 5.80
2263 2390 0.108662 GGCTTGTTTGTGCTATGGCC 60.109 55.000 0.00 0.00 37.74 5.36
2264 2391 0.108662 GGGCTTGTTTGTGCTATGGC 60.109 55.000 0.00 0.00 39.26 4.40
2265 2392 1.255882 TGGGCTTGTTTGTGCTATGG 58.744 50.000 0.00 0.00 0.00 2.74
2266 2393 3.383620 TTTGGGCTTGTTTGTGCTATG 57.616 42.857 0.00 0.00 0.00 2.23
2267 2394 3.577848 TCATTTGGGCTTGTTTGTGCTAT 59.422 39.130 0.00 0.00 0.00 2.97
2268 2395 2.961741 TCATTTGGGCTTGTTTGTGCTA 59.038 40.909 0.00 0.00 0.00 3.49
2269 2396 1.761784 TCATTTGGGCTTGTTTGTGCT 59.238 42.857 0.00 0.00 0.00 4.40
2270 2397 2.237393 TCATTTGGGCTTGTTTGTGC 57.763 45.000 0.00 0.00 0.00 4.57
2271 2398 4.440880 TCTTTCATTTGGGCTTGTTTGTG 58.559 39.130 0.00 0.00 0.00 3.33
2272 2399 4.751767 TCTTTCATTTGGGCTTGTTTGT 57.248 36.364 0.00 0.00 0.00 2.83
2273 2400 7.656948 TCTTATTCTTTCATTTGGGCTTGTTTG 59.343 33.333 0.00 0.00 0.00 2.93
2274 2401 7.734942 TCTTATTCTTTCATTTGGGCTTGTTT 58.265 30.769 0.00 0.00 0.00 2.83
2275 2402 7.301868 TCTTATTCTTTCATTTGGGCTTGTT 57.698 32.000 0.00 0.00 0.00 2.83
2276 2403 6.916360 TCTTATTCTTTCATTTGGGCTTGT 57.084 33.333 0.00 0.00 0.00 3.16
2277 2404 7.656948 TGTTTCTTATTCTTTCATTTGGGCTTG 59.343 33.333 0.00 0.00 0.00 4.01
2278 2405 7.734942 TGTTTCTTATTCTTTCATTTGGGCTT 58.265 30.769 0.00 0.00 0.00 4.35
2279 2406 7.301868 TGTTTCTTATTCTTTCATTTGGGCT 57.698 32.000 0.00 0.00 0.00 5.19
2280 2407 9.651913 TTATGTTTCTTATTCTTTCATTTGGGC 57.348 29.630 0.00 0.00 0.00 5.36
2286 2413 9.875691 GGCCTTTTATGTTTCTTATTCTTTCAT 57.124 29.630 0.00 0.00 0.00 2.57
2287 2414 8.865090 TGGCCTTTTATGTTTCTTATTCTTTCA 58.135 29.630 3.32 0.00 0.00 2.69
2288 2415 9.140286 GTGGCCTTTTATGTTTCTTATTCTTTC 57.860 33.333 3.32 0.00 0.00 2.62
2289 2416 8.094548 GGTGGCCTTTTATGTTTCTTATTCTTT 58.905 33.333 3.32 0.00 0.00 2.52
2290 2417 7.234577 TGGTGGCCTTTTATGTTTCTTATTCTT 59.765 33.333 3.32 0.00 0.00 2.52
2291 2418 6.723977 TGGTGGCCTTTTATGTTTCTTATTCT 59.276 34.615 3.32 0.00 0.00 2.40
2292 2419 6.930731 TGGTGGCCTTTTATGTTTCTTATTC 58.069 36.000 3.32 0.00 0.00 1.75
2293 2420 6.070824 CCTGGTGGCCTTTTATGTTTCTTATT 60.071 38.462 3.32 0.00 0.00 1.40
2294 2421 5.422012 CCTGGTGGCCTTTTATGTTTCTTAT 59.578 40.000 3.32 0.00 0.00 1.73
2295 2422 4.770010 CCTGGTGGCCTTTTATGTTTCTTA 59.230 41.667 3.32 0.00 0.00 2.10
2296 2423 3.578282 CCTGGTGGCCTTTTATGTTTCTT 59.422 43.478 3.32 0.00 0.00 2.52
2297 2424 3.165071 CCTGGTGGCCTTTTATGTTTCT 58.835 45.455 3.32 0.00 0.00 2.52
2298 2425 2.233676 CCCTGGTGGCCTTTTATGTTTC 59.766 50.000 3.32 0.00 0.00 2.78
2299 2426 2.256306 CCCTGGTGGCCTTTTATGTTT 58.744 47.619 3.32 0.00 0.00 2.83
2300 2427 1.552254 CCCCTGGTGGCCTTTTATGTT 60.552 52.381 3.32 0.00 0.00 2.71
2301 2428 0.041090 CCCCTGGTGGCCTTTTATGT 59.959 55.000 3.32 0.00 0.00 2.29
2302 2429 0.334676 TCCCCTGGTGGCCTTTTATG 59.665 55.000 3.32 0.00 0.00 1.90
2303 2430 1.089123 TTCCCCTGGTGGCCTTTTAT 58.911 50.000 3.32 0.00 0.00 1.40
2304 2431 0.113580 GTTCCCCTGGTGGCCTTTTA 59.886 55.000 3.32 0.00 0.00 1.52
2305 2432 1.152333 GTTCCCCTGGTGGCCTTTT 60.152 57.895 3.32 0.00 0.00 2.27
2306 2433 2.091283 AGTTCCCCTGGTGGCCTTT 61.091 57.895 3.32 0.00 0.00 3.11
2307 2434 2.452491 AGTTCCCCTGGTGGCCTT 60.452 61.111 3.32 0.00 0.00 4.35
2308 2435 3.260100 CAGTTCCCCTGGTGGCCT 61.260 66.667 3.32 0.00 37.54 5.19
2309 2436 3.569200 GACAGTTCCCCTGGTGGCC 62.569 68.421 0.00 0.00 46.06 5.36
2310 2437 2.034221 GACAGTTCCCCTGGTGGC 59.966 66.667 0.00 0.00 46.06 5.01
2311 2438 1.127567 TCTGACAGTTCCCCTGGTGG 61.128 60.000 1.59 0.00 46.06 4.61
2312 2439 0.322975 CTCTGACAGTTCCCCTGGTG 59.677 60.000 1.59 0.00 46.06 4.17
2313 2440 0.191064 TCTCTGACAGTTCCCCTGGT 59.809 55.000 1.59 0.00 46.06 4.00
2314 2441 0.901124 CTCTCTGACAGTTCCCCTGG 59.099 60.000 1.59 0.00 46.06 4.45
2316 2443 0.907230 GGCTCTCTGACAGTTCCCCT 60.907 60.000 1.59 0.00 0.00 4.79
2317 2444 1.599576 GGCTCTCTGACAGTTCCCC 59.400 63.158 1.59 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.