Multiple sequence alignment - TraesCS1B01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G104800 chr1B 100.000 3400 0 0 1 3400 115747987 115751386 0.000000e+00 6279
1 TraesCS1B01G104800 chr1B 85.612 695 57 11 64 735 648131697 648132371 0.000000e+00 689
2 TraesCS1B01G104800 chr1B 87.016 439 35 7 47 482 681856875 681857294 3.070000e-130 475
3 TraesCS1B01G104800 chr1B 90.741 216 10 7 3194 3400 337419636 337419422 2.580000e-71 279
4 TraesCS1B01G104800 chr3B 88.427 769 51 11 10 745 419065131 419064368 0.000000e+00 893
5 TraesCS1B01G104800 chr7D 86.979 768 64 11 4 737 117876589 117875824 0.000000e+00 832
6 TraesCS1B01G104800 chr5D 86.719 768 62 15 4 734 477033561 477032797 0.000000e+00 817
7 TraesCS1B01G104800 chr5D 85.035 715 63 17 64 739 445835913 445835204 0.000000e+00 688
8 TraesCS1B01G104800 chr5D 74.461 1809 311 89 1091 2863 552352794 552351101 2.860000e-180 641
9 TraesCS1B01G104800 chr5D 76.211 1177 211 41 1016 2158 551738723 551739864 2.960000e-155 558
10 TraesCS1B01G104800 chr5D 77.009 535 95 17 996 1516 552422799 552422279 7.180000e-72 281
11 TraesCS1B01G104800 chr5D 90.783 217 8 8 3194 3400 558689710 558689924 2.580000e-71 279
12 TraesCS1B01G104800 chr5D 85.000 240 31 3 956 1191 552458424 552458186 4.380000e-59 239
13 TraesCS1B01G104800 chr5D 85.841 226 24 4 971 1189 552051672 552051448 2.040000e-57 233
14 TraesCS1B01G104800 chr5D 73.898 567 94 30 961 1522 543503748 543503231 9.690000e-41 178
15 TraesCS1B01G104800 chr5D 73.131 495 97 26 1013 1492 551086606 551086133 9.830000e-31 145
16 TraesCS1B01G104800 chr5D 92.208 77 6 0 1440 1516 551074278 551074354 3.590000e-20 110
17 TraesCS1B01G104800 chr7B 86.877 762 56 14 4 739 668449367 668450110 0.000000e+00 813
18 TraesCS1B01G104800 chr7B 86.376 756 67 21 13 737 642280665 642281415 0.000000e+00 793
19 TraesCS1B01G104800 chr7B 93.037 517 27 5 2574 3085 1253156 1253668 0.000000e+00 747
20 TraesCS1B01G104800 chr7B 90.942 552 22 11 1489 2032 1252064 1252595 0.000000e+00 717
21 TraesCS1B01G104800 chr7B 93.182 484 23 6 2030 2511 1252677 1253152 0.000000e+00 702
22 TraesCS1B01G104800 chr7B 87.288 354 12 5 906 1254 1251594 1251919 1.150000e-99 374
23 TraesCS1B01G104800 chr7B 91.603 131 5 2 1266 1391 1251900 1252029 3.490000e-40 176
24 TraesCS1B01G104800 chr5B 76.395 1631 281 62 1016 2588 699597109 699598693 0.000000e+00 784
25 TraesCS1B01G104800 chr5B 75.616 1665 302 65 981 2588 703716164 703717781 0.000000e+00 730
26 TraesCS1B01G104800 chr5B 75.362 1725 306 76 1016 2677 700006993 700008661 0.000000e+00 721
27 TraesCS1B01G104800 chr5B 74.613 1871 330 91 1035 2861 703644564 703646333 0.000000e+00 689
28 TraesCS1B01G104800 chr5B 77.226 584 98 24 951 1516 677811994 677812560 3.300000e-80 309
29 TraesCS1B01G104800 chr5B 80.336 417 75 6 1720 2131 698257299 698257713 3.300000e-80 309
30 TraesCS1B01G104800 chr5B 76.091 573 99 23 956 1525 685323115 685322578 7.230000e-67 265
31 TraesCS1B01G104800 chr5B 76.091 573 99 23 956 1525 685503728 685504265 7.230000e-67 265
32 TraesCS1B01G104800 chr5B 81.176 340 49 9 1805 2132 703501224 703500888 3.370000e-65 259
33 TraesCS1B01G104800 chr5B 75.742 573 99 26 952 1510 685499442 685499988 5.630000e-63 252
34 TraesCS1B01G104800 chr5B 86.283 226 25 4 970 1191 698256529 698256752 1.220000e-59 241
35 TraesCS1B01G104800 chr5B 76.890 463 76 19 956 1403 703496697 703497143 2.040000e-57 233
36 TraesCS1B01G104800 chr5B 84.167 240 33 4 958 1193 700039450 700039688 9.490000e-56 228
37 TraesCS1B01G104800 chr5B 75.150 499 102 14 1004 1494 699260102 699260586 7.390000e-52 215
38 TraesCS1B01G104800 chr5B 74.490 588 101 27 956 1516 699354007 699354572 3.440000e-50 209
39 TraesCS1B01G104800 chr5B 86.550 171 21 2 1019 1188 703488497 703488666 1.610000e-43 187
40 TraesCS1B01G104800 chr5B 82.258 186 26 7 1972 2154 699420626 699420807 1.630000e-33 154
41 TraesCS1B01G104800 chr5B 81.667 180 31 2 1013 1191 703502058 703501880 7.600000e-32 148
42 TraesCS1B01G104800 chr6B 86.413 736 70 11 4 735 202115077 202115786 0.000000e+00 778
43 TraesCS1B01G104800 chr6B 92.166 217 5 9 3194 3400 178506415 178506629 2.570000e-76 296
44 TraesCS1B01G104800 chr4B 86.050 767 50 19 3 735 250767238 250767981 0.000000e+00 771
45 TraesCS1B01G104800 chr4B 85.658 767 53 24 3 735 250823735 250824478 0.000000e+00 754
46 TraesCS1B01G104800 chr6D 85.306 769 71 15 4 739 17388860 17388101 0.000000e+00 756
47 TraesCS1B01G104800 chr6D 88.186 474 46 6 271 737 437962027 437962497 1.070000e-154 556
48 TraesCS1B01G104800 chr7A 85.151 761 63 17 14 735 369578029 369578778 0.000000e+00 734
49 TraesCS1B01G104800 chr1D 84.023 701 56 20 73 735 402836054 402836736 1.040000e-174 623
50 TraesCS1B01G104800 chr1D 91.204 216 9 7 3194 3400 187570314 187570528 5.550000e-73 285
51 TraesCS1B01G104800 chr4A 75.808 1393 225 62 981 2308 616754881 616753536 1.350000e-168 603
52 TraesCS1B01G104800 chr4A 77.203 522 88 15 1006 1525 616897507 616897015 3.340000e-70 276
53 TraesCS1B01G104800 chr4A 76.389 576 85 31 951 1510 632939264 632939804 2.600000e-66 263
54 TraesCS1B01G104800 chr4A 75.468 587 106 24 955 1516 616886016 616885443 5.630000e-63 252
55 TraesCS1B01G104800 chr4A 75.676 518 96 22 999 1494 616238383 616237874 7.340000e-57 231
56 TraesCS1B01G104800 chr4A 73.684 513 105 13 1017 1523 616871852 616871364 4.510000e-39 172
57 TraesCS1B01G104800 chr2D 86.994 469 48 9 277 737 641123388 641123851 1.810000e-142 516
58 TraesCS1B01G104800 chr2D 78.016 373 56 18 1003 1353 28956961 28957329 9.560000e-51 211
59 TraesCS1B01G104800 chr6A 78.723 752 95 35 4 735 14413632 14414338 3.110000e-120 442
60 TraesCS1B01G104800 chr4D 92.130 216 7 7 3194 3400 154754633 154754419 2.570000e-76 296
61 TraesCS1B01G104800 chr3D 92.130 216 7 7 3194 3400 550607324 550607110 2.570000e-76 296
62 TraesCS1B01G104800 chr3D 92.130 216 7 7 3194 3400 555231133 555230919 2.570000e-76 296
63 TraesCS1B01G104800 chrUn 91.667 216 8 7 3194 3400 99234443 99234657 1.190000e-74 291
64 TraesCS1B01G104800 chr2A 91.204 216 9 7 3194 3400 2158705 2158919 5.550000e-73 285
65 TraesCS1B01G104800 chr2A 79.050 358 49 18 1012 1353 31041728 31042075 4.420000e-54 222
66 TraesCS1B01G104800 chr5A 79.330 179 30 7 1010 1185 632881999 632882173 5.960000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G104800 chr1B 115747987 115751386 3399 False 6279.0 6279 100.0000 1 3400 1 chr1B.!!$F1 3399
1 TraesCS1B01G104800 chr1B 648131697 648132371 674 False 689.0 689 85.6120 64 735 1 chr1B.!!$F2 671
2 TraesCS1B01G104800 chr3B 419064368 419065131 763 True 893.0 893 88.4270 10 745 1 chr3B.!!$R1 735
3 TraesCS1B01G104800 chr7D 117875824 117876589 765 True 832.0 832 86.9790 4 737 1 chr7D.!!$R1 733
4 TraesCS1B01G104800 chr5D 477032797 477033561 764 True 817.0 817 86.7190 4 734 1 chr5D.!!$R2 730
5 TraesCS1B01G104800 chr5D 445835204 445835913 709 True 688.0 688 85.0350 64 739 1 chr5D.!!$R1 675
6 TraesCS1B01G104800 chr5D 552351101 552352794 1693 True 641.0 641 74.4610 1091 2863 1 chr5D.!!$R6 1772
7 TraesCS1B01G104800 chr5D 551738723 551739864 1141 False 558.0 558 76.2110 1016 2158 1 chr5D.!!$F2 1142
8 TraesCS1B01G104800 chr5D 552422279 552422799 520 True 281.0 281 77.0090 996 1516 1 chr5D.!!$R7 520
9 TraesCS1B01G104800 chr7B 668449367 668450110 743 False 813.0 813 86.8770 4 739 1 chr7B.!!$F2 735
10 TraesCS1B01G104800 chr7B 642280665 642281415 750 False 793.0 793 86.3760 13 737 1 chr7B.!!$F1 724
11 TraesCS1B01G104800 chr7B 1251594 1253668 2074 False 543.2 747 91.2104 906 3085 5 chr7B.!!$F3 2179
12 TraesCS1B01G104800 chr5B 699597109 699598693 1584 False 784.0 784 76.3950 1016 2588 1 chr5B.!!$F5 1572
13 TraesCS1B01G104800 chr5B 703716164 703717781 1617 False 730.0 730 75.6160 981 2588 1 chr5B.!!$F11 1607
14 TraesCS1B01G104800 chr5B 700006993 700008661 1668 False 721.0 721 75.3620 1016 2677 1 chr5B.!!$F6 1661
15 TraesCS1B01G104800 chr5B 703644564 703646333 1769 False 689.0 689 74.6130 1035 2861 1 chr5B.!!$F10 1826
16 TraesCS1B01G104800 chr5B 677811994 677812560 566 False 309.0 309 77.2260 951 1516 1 chr5B.!!$F1 565
17 TraesCS1B01G104800 chr5B 698256529 698257713 1184 False 275.0 309 83.3095 970 2131 2 chr5B.!!$F13 1161
18 TraesCS1B01G104800 chr5B 685322578 685323115 537 True 265.0 265 76.0910 956 1525 1 chr5B.!!$R1 569
19 TraesCS1B01G104800 chr5B 685499442 685504265 4823 False 258.5 265 75.9165 952 1525 2 chr5B.!!$F12 573
20 TraesCS1B01G104800 chr5B 699354007 699354572 565 False 209.0 209 74.4900 956 1516 1 chr5B.!!$F3 560
21 TraesCS1B01G104800 chr5B 703500888 703502058 1170 True 203.5 259 81.4215 1013 2132 2 chr5B.!!$R2 1119
22 TraesCS1B01G104800 chr6B 202115077 202115786 709 False 778.0 778 86.4130 4 735 1 chr6B.!!$F2 731
23 TraesCS1B01G104800 chr4B 250767238 250767981 743 False 771.0 771 86.0500 3 735 1 chr4B.!!$F1 732
24 TraesCS1B01G104800 chr4B 250823735 250824478 743 False 754.0 754 85.6580 3 735 1 chr4B.!!$F2 732
25 TraesCS1B01G104800 chr6D 17388101 17388860 759 True 756.0 756 85.3060 4 739 1 chr6D.!!$R1 735
26 TraesCS1B01G104800 chr7A 369578029 369578778 749 False 734.0 734 85.1510 14 735 1 chr7A.!!$F1 721
27 TraesCS1B01G104800 chr1D 402836054 402836736 682 False 623.0 623 84.0230 73 735 1 chr1D.!!$F2 662
28 TraesCS1B01G104800 chr4A 616753536 616754881 1345 True 603.0 603 75.8080 981 2308 1 chr4A.!!$R2 1327
29 TraesCS1B01G104800 chr4A 632939264 632939804 540 False 263.0 263 76.3890 951 1510 1 chr4A.!!$F1 559
30 TraesCS1B01G104800 chr4A 616885443 616886016 573 True 252.0 252 75.4680 955 1516 1 chr4A.!!$R4 561
31 TraesCS1B01G104800 chr4A 616237874 616238383 509 True 231.0 231 75.6760 999 1494 1 chr4A.!!$R1 495
32 TraesCS1B01G104800 chr6A 14413632 14414338 706 False 442.0 442 78.7230 4 735 1 chr6A.!!$F1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 313 0.108585 AGATCTTGCCAACACCGTGT 59.891 50.0 0.0 0.0 0.0 4.49 F
915 1014 0.325671 TCCCCATCCCTCTCACAGTC 60.326 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2267 2741 1.017177 TTTGGTCGAGCGCACATACC 61.017 55.0 11.47 14.57 0.0 2.73 R
2611 3245 0.840617 TCCCCTGCTTACACACAACA 59.159 50.0 0.00 0.00 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.435938 GCATCGGTGGCTTCGGAA 60.436 61.111 0.00 0.00 0.00 4.30
159 160 0.183492 GGCATGGGAGGCATGAGTTA 59.817 55.000 0.00 0.00 32.09 2.24
269 313 0.108585 AGATCTTGCCAACACCGTGT 59.891 50.000 0.00 0.00 0.00 4.49
428 500 6.127758 CGGATTTTGAACTTGGTTGGATGATA 60.128 38.462 0.00 0.00 0.00 2.15
450 522 5.999205 ATTGTGGGCATGAATTTGAACTA 57.001 34.783 0.00 0.00 0.00 2.24
467 540 4.892934 TGAACTAGTGGGCATGAACTTTTT 59.107 37.500 0.00 0.00 0.00 1.94
468 541 6.065374 TGAACTAGTGGGCATGAACTTTTTA 58.935 36.000 0.00 0.00 0.00 1.52
570 665 2.412870 CAATATATGGCAAGCGTCGGA 58.587 47.619 0.00 0.00 0.00 4.55
739 838 3.743396 GGCGGTTGAAGATGCTCTAATAG 59.257 47.826 0.00 0.00 0.00 1.73
740 839 4.501571 GGCGGTTGAAGATGCTCTAATAGA 60.502 45.833 0.00 0.00 0.00 1.98
741 840 5.050490 GCGGTTGAAGATGCTCTAATAGAA 58.950 41.667 0.00 0.00 0.00 2.10
742 841 5.176590 GCGGTTGAAGATGCTCTAATAGAAG 59.823 44.000 0.00 0.00 0.00 2.85
743 842 6.276847 CGGTTGAAGATGCTCTAATAGAAGT 58.723 40.000 0.00 0.00 0.00 3.01
744 843 7.426410 CGGTTGAAGATGCTCTAATAGAAGTA 58.574 38.462 0.00 0.00 0.00 2.24
745 844 7.921214 CGGTTGAAGATGCTCTAATAGAAGTAA 59.079 37.037 0.00 0.00 0.00 2.24
746 845 9.771534 GGTTGAAGATGCTCTAATAGAAGTAAT 57.228 33.333 0.00 0.00 0.00 1.89
770 869 4.497473 TGTTCCAAAGTTATTTCAGCCG 57.503 40.909 0.00 0.00 0.00 5.52
771 870 3.254657 TGTTCCAAAGTTATTTCAGCCGG 59.745 43.478 0.00 0.00 0.00 6.13
772 871 3.149005 TCCAAAGTTATTTCAGCCGGT 57.851 42.857 1.90 0.00 0.00 5.28
773 872 4.289238 TCCAAAGTTATTTCAGCCGGTA 57.711 40.909 1.90 0.00 0.00 4.02
774 873 4.850680 TCCAAAGTTATTTCAGCCGGTAT 58.149 39.130 1.90 0.00 0.00 2.73
775 874 4.638421 TCCAAAGTTATTTCAGCCGGTATG 59.362 41.667 1.90 2.35 0.00 2.39
776 875 4.638421 CCAAAGTTATTTCAGCCGGTATGA 59.362 41.667 1.90 5.22 0.00 2.15
777 876 5.299279 CCAAAGTTATTTCAGCCGGTATGAT 59.701 40.000 11.61 2.09 0.00 2.45
778 877 6.183360 CCAAAGTTATTTCAGCCGGTATGATT 60.183 38.462 11.61 6.27 0.00 2.57
779 878 7.012894 CCAAAGTTATTTCAGCCGGTATGATTA 59.987 37.037 11.61 4.92 0.00 1.75
780 879 7.730364 AAGTTATTTCAGCCGGTATGATTAG 57.270 36.000 11.61 0.00 0.00 1.73
781 880 5.701290 AGTTATTTCAGCCGGTATGATTAGC 59.299 40.000 11.61 9.09 0.00 3.09
782 881 3.838244 TTTCAGCCGGTATGATTAGCT 57.162 42.857 11.61 0.00 0.00 3.32
783 882 4.948341 TTTCAGCCGGTATGATTAGCTA 57.052 40.909 11.61 0.00 31.23 3.32
784 883 4.948341 TTCAGCCGGTATGATTAGCTAA 57.052 40.909 8.99 8.99 31.23 3.09
785 884 4.948341 TCAGCCGGTATGATTAGCTAAA 57.052 40.909 10.85 0.00 31.23 1.85
786 885 5.284861 TCAGCCGGTATGATTAGCTAAAA 57.715 39.130 10.85 2.33 31.23 1.52
787 886 5.865085 TCAGCCGGTATGATTAGCTAAAAT 58.135 37.500 10.85 9.91 31.23 1.82
788 887 6.296026 TCAGCCGGTATGATTAGCTAAAATT 58.704 36.000 10.85 0.00 31.23 1.82
789 888 6.426937 TCAGCCGGTATGATTAGCTAAAATTC 59.573 38.462 10.85 4.44 31.23 2.17
790 889 5.705905 AGCCGGTATGATTAGCTAAAATTCC 59.294 40.000 10.85 12.75 30.46 3.01
791 890 5.106277 GCCGGTATGATTAGCTAAAATTCCC 60.106 44.000 10.85 7.42 0.00 3.97
792 891 6.001460 CCGGTATGATTAGCTAAAATTCCCA 58.999 40.000 10.85 2.89 0.00 4.37
793 892 6.488683 CCGGTATGATTAGCTAAAATTCCCAA 59.511 38.462 10.85 0.00 0.00 4.12
794 893 7.013846 CCGGTATGATTAGCTAAAATTCCCAAA 59.986 37.037 10.85 0.00 0.00 3.28
795 894 8.576442 CGGTATGATTAGCTAAAATTCCCAAAT 58.424 33.333 10.85 0.00 0.00 2.32
803 902 9.883142 TTAGCTAAAATTCCCAAATAAACCATG 57.117 29.630 2.97 0.00 0.00 3.66
804 903 8.144862 AGCTAAAATTCCCAAATAAACCATGA 57.855 30.769 0.00 0.00 0.00 3.07
805 904 8.040727 AGCTAAAATTCCCAAATAAACCATGAC 58.959 33.333 0.00 0.00 0.00 3.06
806 905 7.821846 GCTAAAATTCCCAAATAAACCATGACA 59.178 33.333 0.00 0.00 0.00 3.58
807 906 7.977789 AAAATTCCCAAATAAACCATGACAC 57.022 32.000 0.00 0.00 0.00 3.67
808 907 6.933514 AATTCCCAAATAAACCATGACACT 57.066 33.333 0.00 0.00 0.00 3.55
809 908 6.933514 ATTCCCAAATAAACCATGACACTT 57.066 33.333 0.00 0.00 0.00 3.16
810 909 8.429237 AATTCCCAAATAAACCATGACACTTA 57.571 30.769 0.00 0.00 0.00 2.24
811 910 8.608185 ATTCCCAAATAAACCATGACACTTAT 57.392 30.769 0.00 0.00 0.00 1.73
812 911 9.707957 ATTCCCAAATAAACCATGACACTTATA 57.292 29.630 0.00 0.00 0.00 0.98
813 912 9.707957 TTCCCAAATAAACCATGACACTTATAT 57.292 29.630 0.00 0.00 0.00 0.86
814 913 9.707957 TCCCAAATAAACCATGACACTTATATT 57.292 29.630 0.00 0.00 0.00 1.28
821 920 8.905103 AAACCATGACACTTATATTAAAACGC 57.095 30.769 0.00 0.00 0.00 4.84
822 921 7.859325 ACCATGACACTTATATTAAAACGCT 57.141 32.000 0.00 0.00 0.00 5.07
823 922 8.951787 ACCATGACACTTATATTAAAACGCTA 57.048 30.769 0.00 0.00 0.00 4.26
824 923 9.555727 ACCATGACACTTATATTAAAACGCTAT 57.444 29.630 0.00 0.00 0.00 2.97
826 925 9.727403 CATGACACTTATATTAAAACGCTATCG 57.273 33.333 0.00 0.00 42.43 2.92
856 955 3.927552 GCTACTGCTTGAACGTTATCC 57.072 47.619 0.00 0.00 36.03 2.59
857 956 3.522553 GCTACTGCTTGAACGTTATCCT 58.477 45.455 0.00 0.00 36.03 3.24
858 957 3.933332 GCTACTGCTTGAACGTTATCCTT 59.067 43.478 0.00 0.00 36.03 3.36
859 958 5.107133 GCTACTGCTTGAACGTTATCCTTA 58.893 41.667 0.00 0.00 36.03 2.69
860 959 5.232414 GCTACTGCTTGAACGTTATCCTTAG 59.768 44.000 0.00 0.00 36.03 2.18
861 960 5.401531 ACTGCTTGAACGTTATCCTTAGA 57.598 39.130 0.00 0.00 0.00 2.10
862 961 5.790593 ACTGCTTGAACGTTATCCTTAGAA 58.209 37.500 0.00 0.00 0.00 2.10
863 962 5.869888 ACTGCTTGAACGTTATCCTTAGAAG 59.130 40.000 0.00 0.00 0.00 2.85
864 963 6.032956 TGCTTGAACGTTATCCTTAGAAGA 57.967 37.500 0.00 0.00 0.00 2.87
865 964 6.460781 TGCTTGAACGTTATCCTTAGAAGAA 58.539 36.000 0.00 0.00 0.00 2.52
866 965 6.590292 TGCTTGAACGTTATCCTTAGAAGAAG 59.410 38.462 0.00 0.00 0.00 2.85
867 966 6.812160 GCTTGAACGTTATCCTTAGAAGAAGA 59.188 38.462 0.00 0.00 0.00 2.87
868 967 7.331193 GCTTGAACGTTATCCTTAGAAGAAGAA 59.669 37.037 0.00 0.00 0.00 2.52
869 968 9.204570 CTTGAACGTTATCCTTAGAAGAAGAAA 57.795 33.333 0.00 0.00 0.00 2.52
870 969 9.550406 TTGAACGTTATCCTTAGAAGAAGAAAA 57.450 29.630 0.00 0.00 0.00 2.29
871 970 9.550406 TGAACGTTATCCTTAGAAGAAGAAAAA 57.450 29.630 0.00 0.00 0.00 1.94
892 991 6.968131 AAAAACACTGCTTTCTTTTCTTCC 57.032 33.333 0.00 0.00 0.00 3.46
893 992 5.921962 AAACACTGCTTTCTTTTCTTCCT 57.078 34.783 0.00 0.00 0.00 3.36
894 993 5.506686 AACACTGCTTTCTTTTCTTCCTC 57.493 39.130 0.00 0.00 0.00 3.71
895 994 3.561725 ACACTGCTTTCTTTTCTTCCTCG 59.438 43.478 0.00 0.00 0.00 4.63
896 995 3.561725 CACTGCTTTCTTTTCTTCCTCGT 59.438 43.478 0.00 0.00 0.00 4.18
897 996 3.810386 ACTGCTTTCTTTTCTTCCTCGTC 59.190 43.478 0.00 0.00 0.00 4.20
898 997 3.139077 TGCTTTCTTTTCTTCCTCGTCC 58.861 45.455 0.00 0.00 0.00 4.79
899 998 2.484651 GCTTTCTTTTCTTCCTCGTCCC 59.515 50.000 0.00 0.00 0.00 4.46
900 999 2.853235 TTCTTTTCTTCCTCGTCCCC 57.147 50.000 0.00 0.00 0.00 4.81
901 1000 1.724545 TCTTTTCTTCCTCGTCCCCA 58.275 50.000 0.00 0.00 0.00 4.96
902 1001 2.266279 TCTTTTCTTCCTCGTCCCCAT 58.734 47.619 0.00 0.00 0.00 4.00
903 1002 2.236395 TCTTTTCTTCCTCGTCCCCATC 59.764 50.000 0.00 0.00 0.00 3.51
904 1003 0.909623 TTTCTTCCTCGTCCCCATCC 59.090 55.000 0.00 0.00 0.00 3.51
912 1011 1.685765 CGTCCCCATCCCTCTCACA 60.686 63.158 0.00 0.00 0.00 3.58
915 1014 0.325671 TCCCCATCCCTCTCACAGTC 60.326 60.000 0.00 0.00 0.00 3.51
931 1030 5.240891 TCACAGTCAACATCTGAAATCCTC 58.759 41.667 0.00 0.00 35.22 3.71
933 1032 5.350914 CACAGTCAACATCTGAAATCCTCTC 59.649 44.000 0.00 0.00 35.22 3.20
934 1033 5.248020 ACAGTCAACATCTGAAATCCTCTCT 59.752 40.000 0.00 0.00 35.22 3.10
1256 1394 2.261671 CTTCGTCTCCACCACGGG 59.738 66.667 0.00 0.00 37.85 5.28
1404 1586 4.738998 CCCATGACAGGCCGCCAA 62.739 66.667 13.15 0.00 0.00 4.52
1526 1724 2.504244 GGTCGTCGTCTTCGGCAG 60.504 66.667 0.00 0.00 42.21 4.85
1527 1725 3.173240 GTCGTCGTCTTCGGCAGC 61.173 66.667 0.00 0.00 42.21 5.25
1528 1726 3.666253 TCGTCGTCTTCGGCAGCA 61.666 61.111 0.00 0.00 42.21 4.41
1541 1739 1.679977 GCAGCATGACCACCCATGT 60.680 57.895 0.00 0.00 44.25 3.21
1543 1741 1.259609 CAGCATGACCACCCATGTTT 58.740 50.000 0.00 0.00 44.25 2.83
1554 1752 4.264352 ACCACCCATGTTTATCATCCTGTT 60.264 41.667 0.00 0.00 34.09 3.16
1555 1753 5.044476 ACCACCCATGTTTATCATCCTGTTA 60.044 40.000 0.00 0.00 34.09 2.41
1556 1754 5.299279 CCACCCATGTTTATCATCCTGTTAC 59.701 44.000 0.00 0.00 34.09 2.50
1626 1902 0.460987 CGTGCCCTGGTCTTGATCTC 60.461 60.000 0.00 0.00 0.00 2.75
1686 2018 4.033358 GTCATCCGAGATGCAGTTTACTTG 59.967 45.833 8.51 0.00 0.00 3.16
1847 2200 2.263540 CTTGGGGCTTGCACATGC 59.736 61.111 0.00 0.00 42.50 4.06
1934 2296 3.733224 CGTAGAGCCATCGATCTCAAAAG 59.267 47.826 14.54 3.59 0.00 2.27
2162 2620 7.533289 TTCCCCTTCTTTTGTGGTTTATTAG 57.467 36.000 0.00 0.00 0.00 1.73
2214 2688 5.602628 TGGTTAGCCCAACAAACAAAATAC 58.397 37.500 0.00 0.00 41.50 1.89
2267 2741 9.681692 TTTTACTTGATGATTCAGTTTGTGATG 57.318 29.630 0.00 0.00 34.17 3.07
2392 2884 4.517285 TCTATGTTGGCAGAAAGGATGAC 58.483 43.478 0.00 0.00 0.00 3.06
2424 2916 4.388485 TGTGAAGCACTGACAACATATGT 58.612 39.130 1.41 1.41 39.11 2.29
2430 2922 5.762045 AGCACTGACAACATATGTTTGAAC 58.238 37.500 18.50 10.34 44.12 3.18
2431 2923 4.612614 GCACTGACAACATATGTTTGAACG 59.387 41.667 18.50 9.54 44.12 3.95
2513 3007 4.025730 CGACATGGGTCTTGTGATTAATCG 60.026 45.833 10.80 0.00 42.05 3.34
2515 3009 4.635765 ACATGGGTCTTGTGATTAATCGTG 59.364 41.667 10.80 1.56 0.00 4.35
2516 3010 4.280436 TGGGTCTTGTGATTAATCGTGT 57.720 40.909 10.80 0.00 0.00 4.49
2517 3011 4.250464 TGGGTCTTGTGATTAATCGTGTC 58.750 43.478 10.80 2.66 0.00 3.67
2520 3150 4.929808 GGTCTTGTGATTAATCGTGTCAGT 59.070 41.667 10.80 0.00 0.00 3.41
2524 3154 7.008447 GTCTTGTGATTAATCGTGTCAGTAGTC 59.992 40.741 10.80 0.00 0.00 2.59
2525 3155 6.262193 TGTGATTAATCGTGTCAGTAGTCA 57.738 37.500 10.80 0.00 0.00 3.41
2530 3160 4.358494 AATCGTGTCAGTAGTCAGTAGC 57.642 45.455 0.00 0.00 0.00 3.58
2536 3166 5.334646 CGTGTCAGTAGTCAGTAGCTGTTTA 60.335 44.000 0.00 0.00 32.61 2.01
2542 3172 3.654414 AGTCAGTAGCTGTTTAGTGCAC 58.346 45.455 9.40 9.40 32.61 4.57
2565 3199 5.164620 TGGTGCTTGAATTCTCATAGTGA 57.835 39.130 7.05 0.00 0.00 3.41
2571 3205 5.970023 GCTTGAATTCTCATAGTGATGTTGC 59.030 40.000 7.05 0.00 34.41 4.17
2610 3244 4.145807 TGATAATTTCCCCGTGTTGTTGT 58.854 39.130 0.00 0.00 0.00 3.32
2611 3245 4.585162 TGATAATTTCCCCGTGTTGTTGTT 59.415 37.500 0.00 0.00 0.00 2.83
2612 3246 2.880963 ATTTCCCCGTGTTGTTGTTG 57.119 45.000 0.00 0.00 0.00 3.33
2613 3247 1.546961 TTTCCCCGTGTTGTTGTTGT 58.453 45.000 0.00 0.00 0.00 3.32
2781 3416 1.760192 CCCTCCAAGCTTTGATCCAG 58.240 55.000 0.00 0.00 0.00 3.86
2785 3420 3.269178 CTCCAAGCTTTGATCCAGTCTC 58.731 50.000 0.00 0.00 0.00 3.36
2821 3460 3.782656 TCTCCCAAAAGAGGTACAACC 57.217 47.619 0.00 0.00 38.99 3.77
2843 3483 3.736720 GATGAGCAGATGAAGTGGCATA 58.263 45.455 0.00 0.00 0.00 3.14
2897 3537 4.541085 TCATATGACAATGCTTTCTGCG 57.459 40.909 0.00 0.00 46.63 5.18
2949 3589 7.948278 ATCTCGTGGATTTAATTAGTGCTAC 57.052 36.000 0.00 0.00 0.00 3.58
2968 3902 4.438336 GCTACGTGTAGTCAAGTGCTGATA 60.438 45.833 0.00 0.00 36.95 2.15
2985 4918 5.887598 TGCTGATATTACTGCAGGTTTGAAT 59.112 36.000 19.93 11.19 39.16 2.57
3069 5068 4.481368 ACTATATGGTTTTGTCAGCCGA 57.519 40.909 0.00 0.00 0.00 5.54
3085 5084 6.090129 GTCAGCCGATTTGCTTGTTTAATAA 58.910 36.000 0.00 0.00 40.32 1.40
3088 5087 7.119992 TCAGCCGATTTGCTTGTTTAATAAGTA 59.880 33.333 3.57 0.00 40.32 2.24
3089 5088 7.218204 CAGCCGATTTGCTTGTTTAATAAGTAC 59.782 37.037 3.57 0.00 40.32 2.73
3090 5089 7.024768 GCCGATTTGCTTGTTTAATAAGTACA 58.975 34.615 3.57 0.00 0.00 2.90
3091 5090 7.218204 GCCGATTTGCTTGTTTAATAAGTACAG 59.782 37.037 3.57 0.00 0.00 2.74
3092 5091 7.218204 CCGATTTGCTTGTTTAATAAGTACAGC 59.782 37.037 3.57 0.00 0.00 4.40
3094 5093 8.742554 ATTTGCTTGTTTAATAAGTACAGCAC 57.257 30.769 3.57 0.00 31.01 4.40
3095 5094 7.504924 TTGCTTGTTTAATAAGTACAGCACT 57.495 32.000 3.57 0.00 40.05 4.40
3096 5095 6.898041 TGCTTGTTTAATAAGTACAGCACTG 58.102 36.000 3.57 0.00 37.63 3.66
3098 5097 7.227711 TGCTTGTTTAATAAGTACAGCACTGAA 59.772 33.333 4.31 0.00 37.63 3.02
3099 5098 7.746475 GCTTGTTTAATAAGTACAGCACTGAAG 59.254 37.037 4.31 0.00 37.63 3.02
3100 5099 8.896320 TTGTTTAATAAGTACAGCACTGAAGA 57.104 30.769 4.31 0.00 37.63 2.87
3101 5100 8.306680 TGTTTAATAAGTACAGCACTGAAGAC 57.693 34.615 4.31 0.00 37.63 3.01
3102 5101 8.148351 TGTTTAATAAGTACAGCACTGAAGACT 58.852 33.333 4.31 2.16 37.63 3.24
3103 5102 8.648968 GTTTAATAAGTACAGCACTGAAGACTC 58.351 37.037 4.31 0.00 37.63 3.36
3104 5103 3.669251 AAGTACAGCACTGAAGACTCC 57.331 47.619 4.31 0.00 37.63 3.85
3105 5104 2.598565 AGTACAGCACTGAAGACTCCA 58.401 47.619 4.31 0.00 35.62 3.86
3106 5105 2.965831 AGTACAGCACTGAAGACTCCAA 59.034 45.455 4.31 0.00 35.62 3.53
3107 5106 3.580458 AGTACAGCACTGAAGACTCCAAT 59.420 43.478 4.31 0.00 35.62 3.16
3108 5107 2.775890 ACAGCACTGAAGACTCCAATG 58.224 47.619 4.31 0.00 0.00 2.82
3110 5109 1.701847 AGCACTGAAGACTCCAATGGT 59.298 47.619 0.00 0.00 0.00 3.55
3114 5612 2.107204 ACTGAAGACTCCAATGGTTGCT 59.893 45.455 0.00 0.00 0.00 3.91
3116 5614 2.886523 TGAAGACTCCAATGGTTGCTTG 59.113 45.455 0.00 0.00 0.00 4.01
3118 5616 2.949447 AGACTCCAATGGTTGCTTGTT 58.051 42.857 0.00 0.00 0.00 2.83
3119 5617 2.887152 AGACTCCAATGGTTGCTTGTTC 59.113 45.455 0.00 0.00 0.00 3.18
3120 5618 1.963515 ACTCCAATGGTTGCTTGTTCC 59.036 47.619 0.00 0.00 0.00 3.62
3121 5619 2.242043 CTCCAATGGTTGCTTGTTCCT 58.758 47.619 0.00 0.00 0.00 3.36
3123 5621 1.962807 CCAATGGTTGCTTGTTCCTCA 59.037 47.619 0.00 0.00 0.00 3.86
3130 5628 0.183492 TGCTTGTTCCTCAACCTGCT 59.817 50.000 0.00 0.00 33.44 4.24
3132 5630 2.158682 TGCTTGTTCCTCAACCTGCTTA 60.159 45.455 0.00 0.00 33.44 3.09
3134 5632 3.127721 GCTTGTTCCTCAACCTGCTTATC 59.872 47.826 0.00 0.00 31.10 1.75
3135 5633 3.350219 TGTTCCTCAACCTGCTTATCC 57.650 47.619 0.00 0.00 0.00 2.59
3140 5638 4.272489 TCCTCAACCTGCTTATCCAATTG 58.728 43.478 0.00 0.00 0.00 2.32
3144 5642 6.152661 CCTCAACCTGCTTATCCAATTGTTAA 59.847 38.462 4.43 1.76 0.00 2.01
3149 5647 7.330262 ACCTGCTTATCCAATTGTTAATTTGG 58.670 34.615 4.43 7.95 0.00 3.28
3150 5648 6.258507 CCTGCTTATCCAATTGTTAATTTGGC 59.741 38.462 4.43 3.36 0.00 4.52
3151 5649 5.809562 TGCTTATCCAATTGTTAATTTGGCG 59.190 36.000 4.43 0.00 0.00 5.69
3152 5650 6.039616 GCTTATCCAATTGTTAATTTGGCGA 58.960 36.000 4.43 0.00 0.00 5.54
3153 5651 6.701400 GCTTATCCAATTGTTAATTTGGCGAT 59.299 34.615 4.43 0.00 0.00 4.58
3154 5652 7.306749 GCTTATCCAATTGTTAATTTGGCGATG 60.307 37.037 4.43 4.78 0.00 3.84
3155 5653 4.753233 TCCAATTGTTAATTTGGCGATGG 58.247 39.130 4.43 0.00 0.00 3.51
3156 5654 3.870419 CCAATTGTTAATTTGGCGATGGG 59.130 43.478 4.43 0.00 0.00 4.00
3158 5656 5.394663 CCAATTGTTAATTTGGCGATGGGTA 60.395 40.000 4.43 0.00 0.00 3.69
3159 5657 5.923733 ATTGTTAATTTGGCGATGGGTAA 57.076 34.783 0.00 0.00 0.00 2.85
3160 5658 5.723672 TTGTTAATTTGGCGATGGGTAAA 57.276 34.783 0.00 0.00 0.00 2.01
3161 5659 5.723672 TGTTAATTTGGCGATGGGTAAAA 57.276 34.783 0.00 0.00 0.00 1.52
3162 5660 6.097915 TGTTAATTTGGCGATGGGTAAAAA 57.902 33.333 0.00 0.00 0.00 1.94
3163 5661 6.159988 TGTTAATTTGGCGATGGGTAAAAAG 58.840 36.000 0.00 0.00 0.00 2.27
3165 5663 2.296073 TTGGCGATGGGTAAAAAGGT 57.704 45.000 0.00 0.00 0.00 3.50
3166 5664 1.540267 TGGCGATGGGTAAAAAGGTG 58.460 50.000 0.00 0.00 0.00 4.00
3167 5665 0.172578 GGCGATGGGTAAAAAGGTGC 59.827 55.000 0.00 0.00 0.00 5.01
3168 5666 0.172578 GCGATGGGTAAAAAGGTGCC 59.827 55.000 0.00 0.00 0.00 5.01
3169 5667 0.815095 CGATGGGTAAAAAGGTGCCC 59.185 55.000 0.00 0.00 41.42 5.36
3171 5669 2.356330 CGATGGGTAAAAAGGTGCCCTA 60.356 50.000 0.00 0.00 41.59 3.53
3172 5670 2.590282 TGGGTAAAAAGGTGCCCTAC 57.410 50.000 0.00 0.00 41.59 3.18
3182 5680 1.569653 GGTGCCCTACCTCTGTTACT 58.430 55.000 0.00 0.00 46.51 2.24
3183 5681 1.907255 GGTGCCCTACCTCTGTTACTT 59.093 52.381 0.00 0.00 46.51 2.24
3184 5682 2.354805 GGTGCCCTACCTCTGTTACTTG 60.355 54.545 0.00 0.00 46.51 3.16
3185 5683 1.906574 TGCCCTACCTCTGTTACTTGG 59.093 52.381 0.00 0.00 0.00 3.61
3186 5684 2.185387 GCCCTACCTCTGTTACTTGGA 58.815 52.381 0.00 0.00 0.00 3.53
3187 5685 2.772515 GCCCTACCTCTGTTACTTGGAT 59.227 50.000 0.00 0.00 0.00 3.41
3188 5686 3.200165 GCCCTACCTCTGTTACTTGGATT 59.800 47.826 0.00 0.00 0.00 3.01
3189 5687 4.770795 CCCTACCTCTGTTACTTGGATTG 58.229 47.826 0.00 0.00 0.00 2.67
3190 5688 4.225267 CCCTACCTCTGTTACTTGGATTGT 59.775 45.833 0.00 0.00 0.00 2.71
3191 5689 5.178797 CCTACCTCTGTTACTTGGATTGTG 58.821 45.833 0.00 0.00 0.00 3.33
3192 5690 4.974645 ACCTCTGTTACTTGGATTGTGA 57.025 40.909 0.00 0.00 0.00 3.58
3193 5691 5.505181 ACCTCTGTTACTTGGATTGTGAT 57.495 39.130 0.00 0.00 0.00 3.06
3196 5694 6.777580 ACCTCTGTTACTTGGATTGTGATTTT 59.222 34.615 0.00 0.00 0.00 1.82
3198 5696 8.237267 CCTCTGTTACTTGGATTGTGATTTTAC 58.763 37.037 0.00 0.00 0.00 2.01
3200 5698 9.126151 TCTGTTACTTGGATTGTGATTTTACAA 57.874 29.630 0.00 0.00 43.93 2.41
3201 5699 9.398170 CTGTTACTTGGATTGTGATTTTACAAG 57.602 33.333 0.00 0.00 43.14 3.16
3202 5700 7.865385 TGTTACTTGGATTGTGATTTTACAAGC 59.135 33.333 0.00 0.00 43.14 4.01
3203 5701 6.655078 ACTTGGATTGTGATTTTACAAGCT 57.345 33.333 6.81 0.00 44.14 3.74
3204 5702 7.054491 ACTTGGATTGTGATTTTACAAGCTT 57.946 32.000 0.00 0.00 44.14 3.74
3205 5703 7.147976 ACTTGGATTGTGATTTTACAAGCTTC 58.852 34.615 0.00 0.00 44.14 3.86
3206 5704 6.899393 TGGATTGTGATTTTACAAGCTTCT 57.101 33.333 0.00 0.00 44.14 2.85
3209 5707 5.512753 TTGTGATTTTACAAGCTTCTGCA 57.487 34.783 0.00 0.00 42.74 4.41
3210 5708 5.512753 TGTGATTTTACAAGCTTCTGCAA 57.487 34.783 0.00 0.00 42.74 4.08
3211 5709 5.280945 TGTGATTTTACAAGCTTCTGCAAC 58.719 37.500 0.00 0.00 42.74 4.17
3212 5710 5.067674 TGTGATTTTACAAGCTTCTGCAACT 59.932 36.000 0.00 0.00 42.74 3.16
3213 5711 5.979517 GTGATTTTACAAGCTTCTGCAACTT 59.020 36.000 0.00 0.00 42.74 2.66
3214 5712 6.476706 GTGATTTTACAAGCTTCTGCAACTTT 59.523 34.615 0.00 0.00 42.74 2.66
3215 5713 7.010460 GTGATTTTACAAGCTTCTGCAACTTTT 59.990 33.333 0.00 0.00 42.74 2.27
3216 5714 7.548780 TGATTTTACAAGCTTCTGCAACTTTTT 59.451 29.630 0.00 0.00 42.74 1.94
3217 5715 6.885735 TTTACAAGCTTCTGCAACTTTTTC 57.114 33.333 0.00 0.00 42.74 2.29
3218 5716 4.725790 ACAAGCTTCTGCAACTTTTTCT 57.274 36.364 0.00 0.00 42.74 2.52
3219 5717 5.077134 ACAAGCTTCTGCAACTTTTTCTT 57.923 34.783 0.00 0.00 42.74 2.52
3224 5722 7.761651 AGCTTCTGCAACTTTTTCTTAAAAG 57.238 32.000 8.41 8.41 46.45 2.27
3256 5754 9.956720 ACATTTTATCACTTGTTCTTTTCTCAG 57.043 29.630 0.00 0.00 0.00 3.35
3263 5761 8.327941 TCACTTGTTCTTTTCTCAGAATATGG 57.672 34.615 0.00 0.00 35.23 2.74
3265 5763 8.786898 CACTTGTTCTTTTCTCAGAATATGGAA 58.213 33.333 0.00 0.00 35.23 3.53
3266 5764 8.787852 ACTTGTTCTTTTCTCAGAATATGGAAC 58.212 33.333 11.86 11.86 35.23 3.62
3267 5765 7.687941 TGTTCTTTTCTCAGAATATGGAACC 57.312 36.000 14.26 0.00 35.23 3.62
3268 5766 7.461749 TGTTCTTTTCTCAGAATATGGAACCT 58.538 34.615 14.26 0.00 35.23 3.50
3269 5767 8.602424 TGTTCTTTTCTCAGAATATGGAACCTA 58.398 33.333 14.26 1.95 35.23 3.08
3270 5768 9.620259 GTTCTTTTCTCAGAATATGGAACCTAT 57.380 33.333 0.00 0.00 35.23 2.57
3274 5772 9.753674 TTTTCTCAGAATATGGAACCTATTTGT 57.246 29.630 0.00 0.00 0.00 2.83
3275 5773 8.737168 TTCTCAGAATATGGAACCTATTTGTG 57.263 34.615 0.00 0.00 0.00 3.33
3276 5774 7.861629 TCTCAGAATATGGAACCTATTTGTGT 58.138 34.615 0.00 0.00 0.00 3.72
3277 5775 8.988060 TCTCAGAATATGGAACCTATTTGTGTA 58.012 33.333 0.00 0.00 0.00 2.90
3284 5782 7.865706 ATGGAACCTATTTGTGTAATCTGAC 57.134 36.000 0.00 0.00 0.00 3.51
3286 5784 6.012858 TGGAACCTATTTGTGTAATCTGACCT 60.013 38.462 0.00 0.00 0.00 3.85
3287 5785 7.181305 TGGAACCTATTTGTGTAATCTGACCTA 59.819 37.037 0.00 0.00 0.00 3.08
3289 5787 9.262358 GAACCTATTTGTGTAATCTGACCTATC 57.738 37.037 0.00 0.00 0.00 2.08
3290 5788 8.554490 ACCTATTTGTGTAATCTGACCTATCT 57.446 34.615 0.00 0.00 0.00 1.98
3292 5790 8.865090 CCTATTTGTGTAATCTGACCTATCTCT 58.135 37.037 0.00 0.00 0.00 3.10
3295 5793 6.019656 TGTGTAATCTGACCTATCTCTCCT 57.980 41.667 0.00 0.00 0.00 3.69
3296 5794 6.436027 TGTGTAATCTGACCTATCTCTCCTT 58.564 40.000 0.00 0.00 0.00 3.36
3298 5796 6.547880 GTGTAATCTGACCTATCTCTCCTTGA 59.452 42.308 0.00 0.00 0.00 3.02
3299 5797 7.232534 GTGTAATCTGACCTATCTCTCCTTGAT 59.767 40.741 0.00 0.00 0.00 2.57
3300 5798 7.786943 TGTAATCTGACCTATCTCTCCTTGATT 59.213 37.037 0.00 0.00 0.00 2.57
3301 5799 7.688918 AATCTGACCTATCTCTCCTTGATTT 57.311 36.000 0.00 0.00 0.00 2.17
3302 5800 7.688918 ATCTGACCTATCTCTCCTTGATTTT 57.311 36.000 0.00 0.00 0.00 1.82
3303 5801 6.882656 TCTGACCTATCTCTCCTTGATTTTG 58.117 40.000 0.00 0.00 0.00 2.44
3305 5803 7.346698 TCTGACCTATCTCTCCTTGATTTTGAT 59.653 37.037 0.00 0.00 0.00 2.57
3306 5804 7.278135 TGACCTATCTCTCCTTGATTTTGATG 58.722 38.462 0.00 0.00 0.00 3.07
3307 5805 7.092712 TGACCTATCTCTCCTTGATTTTGATGT 60.093 37.037 0.00 0.00 0.00 3.06
3308 5806 7.637511 ACCTATCTCTCCTTGATTTTGATGTT 58.362 34.615 0.00 0.00 0.00 2.71
3309 5807 7.555554 ACCTATCTCTCCTTGATTTTGATGTTG 59.444 37.037 0.00 0.00 0.00 3.33
3310 5808 7.555554 CCTATCTCTCCTTGATTTTGATGTTGT 59.444 37.037 0.00 0.00 0.00 3.32
3311 5809 7.771927 ATCTCTCCTTGATTTTGATGTTGTT 57.228 32.000 0.00 0.00 0.00 2.83
3312 5810 6.973843 TCTCTCCTTGATTTTGATGTTGTTG 58.026 36.000 0.00 0.00 0.00 3.33
3313 5811 5.531634 TCTCCTTGATTTTGATGTTGTTGC 58.468 37.500 0.00 0.00 0.00 4.17
3314 5812 5.302568 TCTCCTTGATTTTGATGTTGTTGCT 59.697 36.000 0.00 0.00 0.00 3.91
3315 5813 6.489700 TCTCCTTGATTTTGATGTTGTTGCTA 59.510 34.615 0.00 0.00 0.00 3.49
3316 5814 6.680810 TCCTTGATTTTGATGTTGTTGCTAG 58.319 36.000 0.00 0.00 0.00 3.42
3317 5815 6.489700 TCCTTGATTTTGATGTTGTTGCTAGA 59.510 34.615 0.00 0.00 0.00 2.43
3318 5816 7.014134 TCCTTGATTTTGATGTTGTTGCTAGAA 59.986 33.333 0.00 0.00 0.00 2.10
3320 5818 7.275888 TGATTTTGATGTTGTTGCTAGAACT 57.724 32.000 9.39 0.00 0.00 3.01
3322 5820 4.488126 TTGATGTTGTTGCTAGAACTGC 57.512 40.909 9.39 2.72 0.00 4.40
3324 5822 2.340210 TGTTGTTGCTAGAACTGCCA 57.660 45.000 9.39 0.00 0.00 4.92
3325 5823 2.862541 TGTTGTTGCTAGAACTGCCAT 58.137 42.857 9.39 0.00 0.00 4.40
3329 5827 3.689347 TGTTGCTAGAACTGCCATGAAT 58.311 40.909 0.00 0.00 0.00 2.57
3330 5828 3.441222 TGTTGCTAGAACTGCCATGAATG 59.559 43.478 0.00 0.00 0.00 2.67
3332 5830 2.295885 GCTAGAACTGCCATGAATGCT 58.704 47.619 0.00 0.00 0.00 3.79
3333 5831 2.290093 GCTAGAACTGCCATGAATGCTC 59.710 50.000 0.00 0.00 0.00 4.26
3334 5832 1.376543 AGAACTGCCATGAATGCTCG 58.623 50.000 0.00 0.00 0.00 5.03
3336 5834 0.322816 AACTGCCATGAATGCTCGGT 60.323 50.000 0.00 0.00 0.00 4.69
3337 5835 0.541392 ACTGCCATGAATGCTCGGTA 59.459 50.000 0.00 0.00 0.00 4.02
3338 5836 1.141657 ACTGCCATGAATGCTCGGTAT 59.858 47.619 0.00 0.00 0.00 2.73
3339 5837 2.368548 ACTGCCATGAATGCTCGGTATA 59.631 45.455 0.00 0.00 0.00 1.47
3340 5838 3.008375 ACTGCCATGAATGCTCGGTATAT 59.992 43.478 0.00 0.00 0.00 0.86
3341 5839 4.222810 ACTGCCATGAATGCTCGGTATATA 59.777 41.667 0.00 0.00 0.00 0.86
3342 5840 5.159273 TGCCATGAATGCTCGGTATATAA 57.841 39.130 0.00 0.00 0.00 0.98
3343 5841 5.555966 TGCCATGAATGCTCGGTATATAAA 58.444 37.500 0.00 0.00 0.00 1.40
3344 5842 6.179756 TGCCATGAATGCTCGGTATATAAAT 58.820 36.000 0.00 0.00 0.00 1.40
3345 5843 6.658816 TGCCATGAATGCTCGGTATATAAATT 59.341 34.615 0.00 0.00 0.00 1.82
3346 5844 7.176515 TGCCATGAATGCTCGGTATATAAATTT 59.823 33.333 0.00 0.00 0.00 1.82
3347 5845 8.673711 GCCATGAATGCTCGGTATATAAATTTA 58.326 33.333 0.00 0.00 0.00 1.40
3367 5865 7.672983 ATTTAGATGTTTATATGGTCGCTGG 57.327 36.000 0.00 0.00 0.00 4.85
3369 5867 3.391296 AGATGTTTATATGGTCGCTGGGT 59.609 43.478 0.00 0.00 0.00 4.51
3370 5868 2.912771 TGTTTATATGGTCGCTGGGTG 58.087 47.619 0.00 0.00 0.00 4.61
3371 5869 1.602377 GTTTATATGGTCGCTGGGTGC 59.398 52.381 0.00 0.00 38.57 5.01
3372 5870 1.128200 TTATATGGTCGCTGGGTGCT 58.872 50.000 0.00 0.00 40.11 4.40
3374 5872 1.337384 ATATGGTCGCTGGGTGCTCA 61.337 55.000 0.00 0.00 40.11 4.26
3375 5873 1.337384 TATGGTCGCTGGGTGCTCAT 61.337 55.000 0.00 0.00 40.11 2.90
3377 5875 1.227380 GGTCGCTGGGTGCTCATAG 60.227 63.158 0.00 0.00 40.11 2.23
3378 5876 1.517832 GTCGCTGGGTGCTCATAGT 59.482 57.895 0.00 0.00 40.11 2.12
3380 5878 1.341531 GTCGCTGGGTGCTCATAGTAT 59.658 52.381 0.00 0.00 40.11 2.12
3381 5879 2.557056 GTCGCTGGGTGCTCATAGTATA 59.443 50.000 0.00 0.00 40.11 1.47
3382 5880 2.557056 TCGCTGGGTGCTCATAGTATAC 59.443 50.000 0.00 0.00 40.11 1.47
3384 5882 3.612717 CGCTGGGTGCTCATAGTATACTG 60.613 52.174 15.90 0.53 40.11 2.74
3386 5884 4.202264 GCTGGGTGCTCATAGTATACTGTT 60.202 45.833 15.90 0.00 38.95 3.16
3387 5885 5.685075 GCTGGGTGCTCATAGTATACTGTTT 60.685 44.000 15.90 0.00 38.95 2.83
3388 5886 6.308015 TGGGTGCTCATAGTATACTGTTTT 57.692 37.500 15.90 0.00 0.00 2.43
3390 5888 6.070481 TGGGTGCTCATAGTATACTGTTTTGA 60.070 38.462 15.90 11.31 0.00 2.69
3391 5889 6.480320 GGGTGCTCATAGTATACTGTTTTGAG 59.520 42.308 15.90 19.20 0.00 3.02
3392 5890 7.265673 GGTGCTCATAGTATACTGTTTTGAGA 58.734 38.462 25.36 11.32 0.00 3.27
3393 5891 7.436673 GGTGCTCATAGTATACTGTTTTGAGAG 59.563 40.741 25.36 17.98 0.00 3.20
3394 5892 7.436673 GTGCTCATAGTATACTGTTTTGAGAGG 59.563 40.741 25.36 7.06 0.00 3.69
3395 5893 7.124298 TGCTCATAGTATACTGTTTTGAGAGGT 59.876 37.037 25.36 1.21 0.00 3.85
3397 5895 9.522804 CTCATAGTATACTGTTTTGAGAGGTTC 57.477 37.037 15.90 0.00 0.00 3.62
3398 5896 9.031537 TCATAGTATACTGTTTTGAGAGGTTCA 57.968 33.333 15.90 0.00 0.00 3.18
3399 5897 9.823647 CATAGTATACTGTTTTGAGAGGTTCAT 57.176 33.333 15.90 0.00 35.27 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.747644 CCATGCCGTCAATGCCACTA 60.748 55.000 0.00 0.00 0.00 2.74
41 42 2.192979 CATGCCGCCCATGGTAGT 59.807 61.111 11.73 0.00 46.09 2.73
159 160 2.037620 GCCTCCCATGAGAGACGCAT 62.038 60.000 5.69 0.00 41.42 4.73
231 244 0.877743 TTCAACGGCATCATGCGAAA 59.122 45.000 2.82 0.00 46.21 3.46
269 313 1.205655 CTCCTCCTCTTCATTGTCGCA 59.794 52.381 0.00 0.00 0.00 5.10
428 500 4.895668 AGTTCAAATTCATGCCCACAAT 57.104 36.364 0.00 0.00 0.00 2.71
450 522 4.469657 TGACTAAAAAGTTCATGCCCACT 58.530 39.130 0.00 0.00 0.00 4.00
467 540 6.765512 TCACACAAACAAGTTCATGATGACTA 59.234 34.615 0.00 0.00 0.00 2.59
468 541 5.589855 TCACACAAACAAGTTCATGATGACT 59.410 36.000 0.00 0.00 0.00 3.41
542 626 4.746115 CGCTTGCCATATATTGCATTTTGT 59.254 37.500 11.91 0.00 37.33 2.83
553 648 1.939381 GCATCCGACGCTTGCCATATA 60.939 52.381 8.55 0.00 0.00 0.86
744 843 7.759433 CGGCTGAAATAACTTTGGAACATTATT 59.241 33.333 0.00 0.00 39.30 1.40
745 844 7.257722 CGGCTGAAATAACTTTGGAACATTAT 58.742 34.615 0.00 0.00 39.30 1.28
746 845 6.349777 CCGGCTGAAATAACTTTGGAACATTA 60.350 38.462 0.00 0.00 39.30 1.90
747 846 5.469479 CGGCTGAAATAACTTTGGAACATT 58.531 37.500 0.00 0.00 39.30 2.71
748 847 4.082245 CCGGCTGAAATAACTTTGGAACAT 60.082 41.667 0.00 0.00 39.30 2.71
749 848 3.254657 CCGGCTGAAATAACTTTGGAACA 59.745 43.478 0.00 0.00 0.00 3.18
750 849 3.254903 ACCGGCTGAAATAACTTTGGAAC 59.745 43.478 0.00 0.00 0.00 3.62
751 850 3.492337 ACCGGCTGAAATAACTTTGGAA 58.508 40.909 0.00 0.00 0.00 3.53
752 851 3.149005 ACCGGCTGAAATAACTTTGGA 57.851 42.857 0.00 0.00 0.00 3.53
753 852 4.638421 TCATACCGGCTGAAATAACTTTGG 59.362 41.667 0.00 0.00 0.00 3.28
754 853 5.811399 TCATACCGGCTGAAATAACTTTG 57.189 39.130 0.00 0.00 0.00 2.77
755 854 7.255139 GCTAATCATACCGGCTGAAATAACTTT 60.255 37.037 11.00 2.87 0.00 2.66
756 855 6.204882 GCTAATCATACCGGCTGAAATAACTT 59.795 38.462 11.00 3.48 0.00 2.66
757 856 5.701290 GCTAATCATACCGGCTGAAATAACT 59.299 40.000 11.00 0.00 0.00 2.24
758 857 5.701290 AGCTAATCATACCGGCTGAAATAAC 59.299 40.000 11.00 4.47 31.68 1.89
759 858 5.865085 AGCTAATCATACCGGCTGAAATAA 58.135 37.500 11.00 0.00 31.68 1.40
760 859 5.483685 AGCTAATCATACCGGCTGAAATA 57.516 39.130 11.00 7.18 31.68 1.40
761 860 4.357918 AGCTAATCATACCGGCTGAAAT 57.642 40.909 11.00 6.49 31.68 2.17
762 861 3.838244 AGCTAATCATACCGGCTGAAA 57.162 42.857 11.00 2.94 31.68 2.69
763 862 4.948341 TTAGCTAATCATACCGGCTGAA 57.052 40.909 11.00 0.00 34.88 3.02
764 863 4.948341 TTTAGCTAATCATACCGGCTGA 57.052 40.909 7.08 5.39 34.88 4.26
765 864 6.348540 GGAATTTTAGCTAATCATACCGGCTG 60.349 42.308 7.08 0.00 34.88 4.85
766 865 5.705905 GGAATTTTAGCTAATCATACCGGCT 59.294 40.000 7.08 0.00 37.08 5.52
767 866 5.106277 GGGAATTTTAGCTAATCATACCGGC 60.106 44.000 7.08 0.00 0.00 6.13
768 867 6.001460 TGGGAATTTTAGCTAATCATACCGG 58.999 40.000 7.08 0.00 0.00 5.28
769 868 7.504924 TTGGGAATTTTAGCTAATCATACCG 57.495 36.000 7.08 0.00 0.00 4.02
777 876 9.883142 CATGGTTTATTTGGGAATTTTAGCTAA 57.117 29.630 0.86 0.86 0.00 3.09
778 877 9.261035 TCATGGTTTATTTGGGAATTTTAGCTA 57.739 29.630 0.00 0.00 0.00 3.32
779 878 8.040727 GTCATGGTTTATTTGGGAATTTTAGCT 58.959 33.333 0.00 0.00 0.00 3.32
780 879 7.821846 TGTCATGGTTTATTTGGGAATTTTAGC 59.178 33.333 0.00 0.00 0.00 3.09
781 880 9.150348 GTGTCATGGTTTATTTGGGAATTTTAG 57.850 33.333 0.00 0.00 0.00 1.85
782 881 8.875168 AGTGTCATGGTTTATTTGGGAATTTTA 58.125 29.630 0.00 0.00 0.00 1.52
783 882 7.744733 AGTGTCATGGTTTATTTGGGAATTTT 58.255 30.769 0.00 0.00 0.00 1.82
784 883 7.315066 AGTGTCATGGTTTATTTGGGAATTT 57.685 32.000 0.00 0.00 0.00 1.82
785 884 6.933514 AGTGTCATGGTTTATTTGGGAATT 57.066 33.333 0.00 0.00 0.00 2.17
786 885 6.933514 AAGTGTCATGGTTTATTTGGGAAT 57.066 33.333 0.00 0.00 0.00 3.01
787 886 9.707957 ATATAAGTGTCATGGTTTATTTGGGAA 57.292 29.630 0.00 0.00 0.00 3.97
788 887 9.707957 AATATAAGTGTCATGGTTTATTTGGGA 57.292 29.630 0.00 0.00 0.00 4.37
795 894 9.991388 GCGTTTTAATATAAGTGTCATGGTTTA 57.009 29.630 0.00 0.00 0.00 2.01
796 895 8.736244 AGCGTTTTAATATAAGTGTCATGGTTT 58.264 29.630 0.00 0.00 0.00 3.27
797 896 8.276252 AGCGTTTTAATATAAGTGTCATGGTT 57.724 30.769 0.00 0.00 0.00 3.67
798 897 7.859325 AGCGTTTTAATATAAGTGTCATGGT 57.141 32.000 0.00 0.00 0.00 3.55
800 899 9.727403 CGATAGCGTTTTAATATAAGTGTCATG 57.273 33.333 0.00 0.00 0.00 3.07
836 935 3.522553 AGGATAACGTTCAAGCAGTAGC 58.477 45.455 2.82 0.00 42.56 3.58
837 936 6.561614 TCTAAGGATAACGTTCAAGCAGTAG 58.438 40.000 2.82 0.00 0.00 2.57
838 937 6.519679 TCTAAGGATAACGTTCAAGCAGTA 57.480 37.500 2.82 0.00 0.00 2.74
839 938 5.401531 TCTAAGGATAACGTTCAAGCAGT 57.598 39.130 2.82 0.00 0.00 4.40
840 939 6.100004 TCTTCTAAGGATAACGTTCAAGCAG 58.900 40.000 2.82 0.00 0.00 4.24
841 940 6.032956 TCTTCTAAGGATAACGTTCAAGCA 57.967 37.500 2.82 0.00 0.00 3.91
842 941 6.812160 TCTTCTTCTAAGGATAACGTTCAAGC 59.188 38.462 2.82 0.00 0.00 4.01
843 942 8.758633 TTCTTCTTCTAAGGATAACGTTCAAG 57.241 34.615 2.82 0.00 0.00 3.02
844 943 9.550406 TTTTCTTCTTCTAAGGATAACGTTCAA 57.450 29.630 2.82 0.00 0.00 2.69
845 944 9.550406 TTTTTCTTCTTCTAAGGATAACGTTCA 57.450 29.630 2.82 0.00 0.00 3.18
869 968 6.701340 AGGAAGAAAAGAAAGCAGTGTTTTT 58.299 32.000 6.40 0.69 0.00 1.94
870 969 6.286240 AGGAAGAAAAGAAAGCAGTGTTTT 57.714 33.333 4.45 4.45 0.00 2.43
871 970 5.449177 CGAGGAAGAAAAGAAAGCAGTGTTT 60.449 40.000 0.00 0.00 0.00 2.83
872 971 4.035675 CGAGGAAGAAAAGAAAGCAGTGTT 59.964 41.667 0.00 0.00 0.00 3.32
873 972 3.561725 CGAGGAAGAAAAGAAAGCAGTGT 59.438 43.478 0.00 0.00 0.00 3.55
874 973 3.561725 ACGAGGAAGAAAAGAAAGCAGTG 59.438 43.478 0.00 0.00 0.00 3.66
875 974 3.809905 ACGAGGAAGAAAAGAAAGCAGT 58.190 40.909 0.00 0.00 0.00 4.40
876 975 3.187432 GGACGAGGAAGAAAAGAAAGCAG 59.813 47.826 0.00 0.00 0.00 4.24
877 976 3.139077 GGACGAGGAAGAAAAGAAAGCA 58.861 45.455 0.00 0.00 0.00 3.91
878 977 2.484651 GGGACGAGGAAGAAAAGAAAGC 59.515 50.000 0.00 0.00 0.00 3.51
879 978 3.075148 GGGGACGAGGAAGAAAAGAAAG 58.925 50.000 0.00 0.00 0.00 2.62
880 979 2.440253 TGGGGACGAGGAAGAAAAGAAA 59.560 45.455 0.00 0.00 0.00 2.52
881 980 2.051692 TGGGGACGAGGAAGAAAAGAA 58.948 47.619 0.00 0.00 0.00 2.52
882 981 1.724545 TGGGGACGAGGAAGAAAAGA 58.275 50.000 0.00 0.00 0.00 2.52
883 982 2.633488 GATGGGGACGAGGAAGAAAAG 58.367 52.381 0.00 0.00 0.00 2.27
884 983 1.280998 GGATGGGGACGAGGAAGAAAA 59.719 52.381 0.00 0.00 0.00 2.29
885 984 0.909623 GGATGGGGACGAGGAAGAAA 59.090 55.000 0.00 0.00 0.00 2.52
886 985 0.981277 GGGATGGGGACGAGGAAGAA 60.981 60.000 0.00 0.00 0.00 2.52
887 986 1.382695 GGGATGGGGACGAGGAAGA 60.383 63.158 0.00 0.00 0.00 2.87
888 987 1.383248 AGGGATGGGGACGAGGAAG 60.383 63.158 0.00 0.00 0.00 3.46
889 988 1.382695 GAGGGATGGGGACGAGGAA 60.383 63.158 0.00 0.00 0.00 3.36
890 989 2.282446 GAGGGATGGGGACGAGGA 59.718 66.667 0.00 0.00 0.00 3.71
891 990 1.834822 GAGAGGGATGGGGACGAGG 60.835 68.421 0.00 0.00 0.00 4.63
892 991 1.075970 TGAGAGGGATGGGGACGAG 60.076 63.158 0.00 0.00 0.00 4.18
893 992 1.381327 GTGAGAGGGATGGGGACGA 60.381 63.158 0.00 0.00 0.00 4.20
894 993 1.680522 CTGTGAGAGGGATGGGGACG 61.681 65.000 0.00 0.00 0.00 4.79
895 994 0.618968 ACTGTGAGAGGGATGGGGAC 60.619 60.000 0.00 0.00 0.00 4.46
896 995 0.325671 GACTGTGAGAGGGATGGGGA 60.326 60.000 0.00 0.00 0.00 4.81
897 996 0.618680 TGACTGTGAGAGGGATGGGG 60.619 60.000 0.00 0.00 0.00 4.96
898 997 1.065854 GTTGACTGTGAGAGGGATGGG 60.066 57.143 0.00 0.00 0.00 4.00
899 998 1.625315 TGTTGACTGTGAGAGGGATGG 59.375 52.381 0.00 0.00 0.00 3.51
900 999 3.197333 AGATGTTGACTGTGAGAGGGATG 59.803 47.826 0.00 0.00 0.00 3.51
901 1000 3.197333 CAGATGTTGACTGTGAGAGGGAT 59.803 47.826 0.00 0.00 0.00 3.85
902 1001 2.564504 CAGATGTTGACTGTGAGAGGGA 59.435 50.000 0.00 0.00 0.00 4.20
903 1002 2.564504 TCAGATGTTGACTGTGAGAGGG 59.435 50.000 0.00 0.00 36.81 4.30
904 1003 3.949842 TCAGATGTTGACTGTGAGAGG 57.050 47.619 0.00 0.00 36.81 3.69
912 1011 5.104982 GGAGAGAGGATTTCAGATGTTGACT 60.105 44.000 0.00 0.00 34.94 3.41
915 1014 4.118410 CGGAGAGAGGATTTCAGATGTTG 58.882 47.826 0.00 0.00 0.00 3.33
931 1030 0.671781 CTTTCAGGTGGTGCGGAGAG 60.672 60.000 0.00 0.00 0.00 3.20
933 1032 1.672356 CCTTTCAGGTGGTGCGGAG 60.672 63.158 0.00 0.00 0.00 4.63
934 1033 2.429930 CCTTTCAGGTGGTGCGGA 59.570 61.111 0.00 0.00 0.00 5.54
1368 1547 3.296836 TCCCAAACGACGAGCGGA 61.297 61.111 0.00 0.00 46.49 5.54
1403 1585 1.250840 GGGCGCTTCCATCTTGGTTT 61.251 55.000 7.64 0.00 39.03 3.27
1404 1586 1.678970 GGGCGCTTCCATCTTGGTT 60.679 57.895 7.64 0.00 39.03 3.67
1526 1724 3.023119 TGATAAACATGGGTGGTCATGC 58.977 45.455 0.00 0.00 46.08 4.06
1527 1725 7.908458 CAGGATGATAAACATGGGTGGTCATG 61.908 46.154 0.00 3.60 44.05 3.07
1528 1726 4.168675 AGGATGATAAACATGGGTGGTCAT 59.831 41.667 0.00 0.17 39.56 3.06
1554 1752 5.221106 GGACACGCACACCTGTATAATAGTA 60.221 44.000 0.00 0.00 0.00 1.82
1555 1753 4.441079 GGACACGCACACCTGTATAATAGT 60.441 45.833 0.00 0.00 0.00 2.12
1556 1754 4.049186 GGACACGCACACCTGTATAATAG 58.951 47.826 0.00 0.00 0.00 1.73
1626 1902 1.358877 TGATGAATGCGTCAACTCCG 58.641 50.000 0.00 0.00 40.50 4.63
1686 2018 3.444717 CTCACCACGCGCATGCATC 62.445 63.158 19.57 7.71 42.97 3.91
1847 2200 1.486726 GGTAGAGGGTTGATCCACTGG 59.513 57.143 0.00 0.00 38.11 4.00
1934 2296 3.118629 GGGATTTTGAATGGGAAGAAGGC 60.119 47.826 0.00 0.00 0.00 4.35
2162 2620 3.384702 GCTGCTTAAGCGTTGTTCC 57.615 52.632 21.97 2.11 43.45 3.62
2214 2688 9.823098 CTTTCTTCAGTCTGATTAAACATTCAG 57.177 33.333 2.68 0.00 40.58 3.02
2258 2732 1.468520 AGCGCACATACCATCACAAAC 59.531 47.619 11.47 0.00 0.00 2.93
2267 2741 1.017177 TTTGGTCGAGCGCACATACC 61.017 55.000 11.47 14.57 0.00 2.73
2392 2884 0.890683 GTGCTTCACATTTCAGGGGG 59.109 55.000 0.00 0.00 34.08 5.40
2424 2916 1.606668 CTGCCCTTAAGCACGTTCAAA 59.393 47.619 0.00 0.00 38.00 2.69
2430 2922 1.450312 CCTCCTGCCCTTAAGCACG 60.450 63.158 0.00 0.00 38.00 5.34
2431 2923 1.750780 GCCTCCTGCCCTTAAGCAC 60.751 63.158 0.00 0.00 38.00 4.40
2453 2946 9.995003 AAGTAGTCATCTTTCCTATTGATGATC 57.005 33.333 7.92 0.00 45.24 2.92
2513 3007 4.506886 AACAGCTACTGACTACTGACAC 57.493 45.455 0.78 0.00 35.18 3.67
2515 3009 6.087522 CACTAAACAGCTACTGACTACTGAC 58.912 44.000 0.78 0.00 35.18 3.51
2516 3010 5.335740 GCACTAAACAGCTACTGACTACTGA 60.336 44.000 0.78 0.00 35.18 3.41
2517 3011 4.859798 GCACTAAACAGCTACTGACTACTG 59.140 45.833 0.78 0.00 35.18 2.74
2520 3150 4.523173 AGTGCACTAAACAGCTACTGACTA 59.477 41.667 20.16 0.00 35.18 2.59
2524 3154 2.738846 CCAGTGCACTAAACAGCTACTG 59.261 50.000 21.20 3.01 37.52 2.74
2525 3155 2.368875 ACCAGTGCACTAAACAGCTACT 59.631 45.455 21.20 0.00 0.00 2.57
2536 3166 8.923853 TATGAGAATTCAAGCACCAGTGCACT 62.924 42.308 23.66 15.25 46.15 4.40
2542 3172 5.181009 TCACTATGAGAATTCAAGCACCAG 58.819 41.667 8.44 6.56 36.78 4.00
2552 3186 6.127535 CCAAAGGCAACATCACTATGAGAATT 60.128 38.462 0.00 0.00 36.54 2.17
2565 3199 2.558359 GCTTACTGACCAAAGGCAACAT 59.442 45.455 0.00 0.00 41.41 2.71
2571 3205 7.396540 AATTATCAAGCTTACTGACCAAAGG 57.603 36.000 0.00 0.00 0.00 3.11
2610 3244 1.213182 TCCCCTGCTTACACACAACAA 59.787 47.619 0.00 0.00 0.00 2.83
2611 3245 0.840617 TCCCCTGCTTACACACAACA 59.159 50.000 0.00 0.00 0.00 3.33
2612 3246 1.975660 TTCCCCTGCTTACACACAAC 58.024 50.000 0.00 0.00 0.00 3.32
2613 3247 2.513753 CATTCCCCTGCTTACACACAA 58.486 47.619 0.00 0.00 0.00 3.33
2719 3353 9.700831 AAATTGGGAACACTAGCTAAGATATTT 57.299 29.630 0.00 0.00 42.67 1.40
2781 3416 9.396022 TGGGAGATGAATTTACAATTTAGAGAC 57.604 33.333 0.00 0.00 0.00 3.36
2821 3460 0.935898 GCCACTTCATCTGCTCATCG 59.064 55.000 0.00 0.00 0.00 3.84
2843 3483 5.463154 AGATAGAAACCACTAGCTCTGGAT 58.537 41.667 15.75 2.70 34.63 3.41
2897 3537 2.908940 ACACCAGCAAGCCAGCAC 60.909 61.111 0.55 0.00 36.85 4.40
2911 3551 5.097529 TCCACGAGATTAATTACGACACAC 58.902 41.667 17.50 0.00 0.00 3.82
2949 3589 6.197282 CAGTAATATCAGCACTTGACTACACG 59.803 42.308 0.00 0.00 38.99 4.49
2968 3902 4.039004 TGTGCAATTCAAACCTGCAGTAAT 59.961 37.500 13.81 1.66 46.16 1.89
2985 4918 4.341806 ACATCAGGAAGAAAACATGTGCAA 59.658 37.500 0.00 0.00 0.00 4.08
3052 5051 3.366883 GCAAATCGGCTGACAAAACCATA 60.367 43.478 0.00 0.00 0.00 2.74
3069 5068 8.576442 AGTGCTGTACTTATTAAACAAGCAAAT 58.424 29.630 0.00 0.00 35.67 2.32
3085 5084 2.598565 TGGAGTCTTCAGTGCTGTACT 58.401 47.619 0.00 0.00 41.36 2.73
3088 5087 2.551721 CCATTGGAGTCTTCAGTGCTGT 60.552 50.000 0.00 0.00 0.00 4.40
3089 5088 2.082231 CCATTGGAGTCTTCAGTGCTG 58.918 52.381 0.00 0.00 0.00 4.41
3090 5089 1.701847 ACCATTGGAGTCTTCAGTGCT 59.298 47.619 10.37 0.00 0.00 4.40
3091 5090 2.191128 ACCATTGGAGTCTTCAGTGC 57.809 50.000 10.37 0.00 0.00 4.40
3092 5091 2.227388 GCAACCATTGGAGTCTTCAGTG 59.773 50.000 10.37 0.00 0.00 3.66
3094 5093 2.787994 AGCAACCATTGGAGTCTTCAG 58.212 47.619 10.37 0.00 0.00 3.02
3095 5094 2.886523 CAAGCAACCATTGGAGTCTTCA 59.113 45.455 10.37 0.00 0.00 3.02
3096 5095 2.887152 ACAAGCAACCATTGGAGTCTTC 59.113 45.455 10.37 0.00 31.76 2.87
3098 5097 2.664402 ACAAGCAACCATTGGAGTCT 57.336 45.000 10.37 0.00 31.76 3.24
3099 5098 2.029918 GGAACAAGCAACCATTGGAGTC 60.030 50.000 10.37 0.00 31.76 3.36
3100 5099 1.963515 GGAACAAGCAACCATTGGAGT 59.036 47.619 10.37 0.00 31.76 3.85
3101 5100 2.229784 GAGGAACAAGCAACCATTGGAG 59.770 50.000 10.37 2.55 31.76 3.86
3102 5101 2.238521 GAGGAACAAGCAACCATTGGA 58.761 47.619 10.37 0.00 31.76 3.53
3103 5102 1.962807 TGAGGAACAAGCAACCATTGG 59.037 47.619 0.00 0.00 31.76 3.16
3104 5103 3.383761 GTTGAGGAACAAGCAACCATTG 58.616 45.455 0.00 0.00 39.30 2.82
3105 5104 3.733443 GTTGAGGAACAAGCAACCATT 57.267 42.857 0.00 0.00 39.30 3.16
3114 5612 3.073798 TGGATAAGCAGGTTGAGGAACAA 59.926 43.478 0.00 0.00 33.27 2.83
3116 5614 3.350219 TGGATAAGCAGGTTGAGGAAC 57.650 47.619 0.00 0.00 0.00 3.62
3118 5616 4.263905 ACAATTGGATAAGCAGGTTGAGGA 60.264 41.667 10.83 0.00 0.00 3.71
3119 5617 4.019174 ACAATTGGATAAGCAGGTTGAGG 58.981 43.478 10.83 0.00 0.00 3.86
3120 5618 5.649782 AACAATTGGATAAGCAGGTTGAG 57.350 39.130 10.83 0.00 0.00 3.02
3121 5619 7.716799 ATTAACAATTGGATAAGCAGGTTGA 57.283 32.000 10.83 0.00 0.00 3.18
3123 5621 7.823799 CCAAATTAACAATTGGATAAGCAGGTT 59.176 33.333 10.83 0.00 0.00 3.50
3126 5624 6.019640 CGCCAAATTAACAATTGGATAAGCAG 60.020 38.462 16.67 3.43 0.00 4.24
3130 5628 6.983307 CCATCGCCAAATTAACAATTGGATAA 59.017 34.615 16.67 9.15 0.00 1.75
3132 5630 5.358922 CCATCGCCAAATTAACAATTGGAT 58.641 37.500 16.67 0.61 0.00 3.41
3134 5632 3.870419 CCCATCGCCAAATTAACAATTGG 59.130 43.478 10.83 10.66 0.00 3.16
3135 5633 4.502962 ACCCATCGCCAAATTAACAATTG 58.497 39.130 3.24 3.24 0.00 2.32
3140 5638 5.579119 CCTTTTTACCCATCGCCAAATTAAC 59.421 40.000 0.00 0.00 0.00 2.01
3144 5642 3.056179 CACCTTTTTACCCATCGCCAAAT 60.056 43.478 0.00 0.00 0.00 2.32
3149 5647 0.172578 GGCACCTTTTTACCCATCGC 59.827 55.000 0.00 0.00 0.00 4.58
3165 5663 1.906574 CCAAGTAACAGAGGTAGGGCA 59.093 52.381 0.00 0.00 0.00 5.36
3166 5664 2.185387 TCCAAGTAACAGAGGTAGGGC 58.815 52.381 0.00 0.00 0.00 5.19
3167 5665 4.225267 ACAATCCAAGTAACAGAGGTAGGG 59.775 45.833 0.00 0.00 0.00 3.53
3168 5666 5.046591 TCACAATCCAAGTAACAGAGGTAGG 60.047 44.000 0.00 0.00 0.00 3.18
3169 5667 6.037786 TCACAATCCAAGTAACAGAGGTAG 57.962 41.667 0.00 0.00 0.00 3.18
3171 5669 4.974645 TCACAATCCAAGTAACAGAGGT 57.025 40.909 0.00 0.00 0.00 3.85
3172 5670 6.824305 AAATCACAATCCAAGTAACAGAGG 57.176 37.500 0.00 0.00 0.00 3.69
3175 5673 9.398170 CTTGTAAAATCACAATCCAAGTAACAG 57.602 33.333 0.00 0.00 37.75 3.16
3176 5674 7.865385 GCTTGTAAAATCACAATCCAAGTAACA 59.135 33.333 0.00 0.00 37.75 2.41
3177 5675 8.082242 AGCTTGTAAAATCACAATCCAAGTAAC 58.918 33.333 0.00 0.00 37.75 2.50
3180 5678 6.655078 AGCTTGTAAAATCACAATCCAAGT 57.345 33.333 0.00 0.00 37.75 3.16
3181 5679 7.327761 CAGAAGCTTGTAAAATCACAATCCAAG 59.672 37.037 2.10 0.00 37.75 3.61
3182 5680 7.147312 CAGAAGCTTGTAAAATCACAATCCAA 58.853 34.615 2.10 0.00 37.75 3.53
3183 5681 6.680810 CAGAAGCTTGTAAAATCACAATCCA 58.319 36.000 2.10 0.00 37.75 3.41
3184 5682 5.574443 GCAGAAGCTTGTAAAATCACAATCC 59.426 40.000 2.10 0.00 37.75 3.01
3185 5683 6.151691 TGCAGAAGCTTGTAAAATCACAATC 58.848 36.000 2.10 0.00 42.74 2.67
3186 5684 6.088016 TGCAGAAGCTTGTAAAATCACAAT 57.912 33.333 2.10 0.00 42.74 2.71
3187 5685 5.512753 TGCAGAAGCTTGTAAAATCACAA 57.487 34.783 2.10 0.00 42.74 3.33
3188 5686 5.067674 AGTTGCAGAAGCTTGTAAAATCACA 59.932 36.000 2.10 0.00 42.74 3.58
3189 5687 5.523369 AGTTGCAGAAGCTTGTAAAATCAC 58.477 37.500 2.10 0.00 42.74 3.06
3190 5688 5.772825 AGTTGCAGAAGCTTGTAAAATCA 57.227 34.783 2.10 0.00 42.74 2.57
3191 5689 7.468922 AAAAGTTGCAGAAGCTTGTAAAATC 57.531 32.000 2.10 0.00 42.74 2.17
3192 5690 7.765819 AGAAAAAGTTGCAGAAGCTTGTAAAAT 59.234 29.630 2.10 0.00 42.74 1.82
3193 5691 7.096551 AGAAAAAGTTGCAGAAGCTTGTAAAA 58.903 30.769 2.10 0.00 42.74 1.52
3196 5694 5.835113 AGAAAAAGTTGCAGAAGCTTGTA 57.165 34.783 2.10 0.00 42.74 2.41
3198 5696 7.524294 TTTAAGAAAAAGTTGCAGAAGCTTG 57.476 32.000 2.10 0.00 42.74 4.01
3200 5698 7.761651 CTTTTAAGAAAAAGTTGCAGAAGCT 57.238 32.000 3.06 0.00 44.36 3.74
3230 5728 9.956720 CTGAGAAAAGAACAAGTGATAAAATGT 57.043 29.630 0.00 0.00 0.00 2.71
3237 5735 8.954350 CCATATTCTGAGAAAAGAACAAGTGAT 58.046 33.333 0.00 0.00 38.95 3.06
3238 5736 8.156820 TCCATATTCTGAGAAAAGAACAAGTGA 58.843 33.333 0.00 0.00 38.95 3.41
3241 5739 8.239998 GGTTCCATATTCTGAGAAAAGAACAAG 58.760 37.037 20.94 1.86 38.95 3.16
3242 5740 7.944554 AGGTTCCATATTCTGAGAAAAGAACAA 59.055 33.333 20.94 3.44 38.95 2.83
3243 5741 7.461749 AGGTTCCATATTCTGAGAAAAGAACA 58.538 34.615 20.94 0.00 38.95 3.18
3248 5746 9.753674 ACAAATAGGTTCCATATTCTGAGAAAA 57.246 29.630 0.00 0.00 0.00 2.29
3249 5747 9.177608 CACAAATAGGTTCCATATTCTGAGAAA 57.822 33.333 0.00 0.00 0.00 2.52
3250 5748 8.328758 ACACAAATAGGTTCCATATTCTGAGAA 58.671 33.333 0.00 0.00 0.00 2.87
3251 5749 7.861629 ACACAAATAGGTTCCATATTCTGAGA 58.138 34.615 0.00 0.00 0.00 3.27
3258 5756 9.561069 GTCAGATTACACAAATAGGTTCCATAT 57.439 33.333 0.00 0.00 0.00 1.78
3259 5757 7.990886 GGTCAGATTACACAAATAGGTTCCATA 59.009 37.037 0.00 0.00 0.00 2.74
3260 5758 6.828785 GGTCAGATTACACAAATAGGTTCCAT 59.171 38.462 0.00 0.00 0.00 3.41
3261 5759 6.012858 AGGTCAGATTACACAAATAGGTTCCA 60.013 38.462 0.00 0.00 0.00 3.53
3262 5760 6.415573 AGGTCAGATTACACAAATAGGTTCC 58.584 40.000 0.00 0.00 0.00 3.62
3263 5761 9.262358 GATAGGTCAGATTACACAAATAGGTTC 57.738 37.037 0.00 0.00 0.00 3.62
3265 5763 8.554490 AGATAGGTCAGATTACACAAATAGGT 57.446 34.615 0.00 0.00 0.00 3.08
3266 5764 8.865090 AGAGATAGGTCAGATTACACAAATAGG 58.135 37.037 0.00 0.00 0.00 2.57
3267 5765 9.906660 GAGAGATAGGTCAGATTACACAAATAG 57.093 37.037 0.00 0.00 0.00 1.73
3268 5766 8.861086 GGAGAGATAGGTCAGATTACACAAATA 58.139 37.037 0.00 0.00 0.00 1.40
3269 5767 7.566879 AGGAGAGATAGGTCAGATTACACAAAT 59.433 37.037 0.00 0.00 0.00 2.32
3270 5768 6.897966 AGGAGAGATAGGTCAGATTACACAAA 59.102 38.462 0.00 0.00 0.00 2.83
3271 5769 6.436027 AGGAGAGATAGGTCAGATTACACAA 58.564 40.000 0.00 0.00 0.00 3.33
3272 5770 6.019656 AGGAGAGATAGGTCAGATTACACA 57.980 41.667 0.00 0.00 0.00 3.72
3273 5771 6.547880 TCAAGGAGAGATAGGTCAGATTACAC 59.452 42.308 0.00 0.00 0.00 2.90
3274 5772 6.673583 TCAAGGAGAGATAGGTCAGATTACA 58.326 40.000 0.00 0.00 0.00 2.41
3275 5773 7.775053 ATCAAGGAGAGATAGGTCAGATTAC 57.225 40.000 0.00 0.00 0.00 1.89
3276 5774 8.789767 AAATCAAGGAGAGATAGGTCAGATTA 57.210 34.615 0.00 0.00 0.00 1.75
3277 5775 7.688918 AAATCAAGGAGAGATAGGTCAGATT 57.311 36.000 0.00 0.00 0.00 2.40
3279 5777 6.669591 TCAAAATCAAGGAGAGATAGGTCAGA 59.330 38.462 0.00 0.00 0.00 3.27
3281 5779 6.874278 TCAAAATCAAGGAGAGATAGGTCA 57.126 37.500 0.00 0.00 0.00 4.02
3282 5780 7.278875 ACATCAAAATCAAGGAGAGATAGGTC 58.721 38.462 0.00 0.00 0.00 3.85
3284 5782 7.555554 ACAACATCAAAATCAAGGAGAGATAGG 59.444 37.037 0.00 0.00 0.00 2.57
3286 5784 8.733458 CAACAACATCAAAATCAAGGAGAGATA 58.267 33.333 0.00 0.00 0.00 1.98
3287 5785 7.600065 CAACAACATCAAAATCAAGGAGAGAT 58.400 34.615 0.00 0.00 0.00 2.75
3289 5787 5.632347 GCAACAACATCAAAATCAAGGAGAG 59.368 40.000 0.00 0.00 0.00 3.20
3290 5788 5.302568 AGCAACAACATCAAAATCAAGGAGA 59.697 36.000 0.00 0.00 0.00 3.71
3292 5790 5.534207 AGCAACAACATCAAAATCAAGGA 57.466 34.783 0.00 0.00 0.00 3.36
3295 5793 7.648908 CAGTTCTAGCAACAACATCAAAATCAA 59.351 33.333 7.50 0.00 0.00 2.57
3296 5794 7.140705 CAGTTCTAGCAACAACATCAAAATCA 58.859 34.615 7.50 0.00 0.00 2.57
3298 5796 5.922544 GCAGTTCTAGCAACAACATCAAAAT 59.077 36.000 7.50 0.00 0.00 1.82
3299 5797 5.280945 GCAGTTCTAGCAACAACATCAAAA 58.719 37.500 7.50 0.00 0.00 2.44
3300 5798 4.261572 GGCAGTTCTAGCAACAACATCAAA 60.262 41.667 7.50 0.00 0.00 2.69
3301 5799 3.253188 GGCAGTTCTAGCAACAACATCAA 59.747 43.478 7.50 0.00 0.00 2.57
3302 5800 2.813754 GGCAGTTCTAGCAACAACATCA 59.186 45.455 7.50 0.00 0.00 3.07
3303 5801 2.813754 TGGCAGTTCTAGCAACAACATC 59.186 45.455 7.50 0.00 0.00 3.06
3305 5803 2.340210 TGGCAGTTCTAGCAACAACA 57.660 45.000 7.50 2.18 0.00 3.33
3306 5804 2.813754 TCATGGCAGTTCTAGCAACAAC 59.186 45.455 0.00 0.00 0.00 3.32
3307 5805 3.138884 TCATGGCAGTTCTAGCAACAA 57.861 42.857 0.00 0.00 0.00 2.83
3308 5806 2.857186 TCATGGCAGTTCTAGCAACA 57.143 45.000 0.00 0.00 0.00 3.33
3309 5807 3.733077 GCATTCATGGCAGTTCTAGCAAC 60.733 47.826 0.00 0.00 0.00 4.17
3310 5808 2.424601 GCATTCATGGCAGTTCTAGCAA 59.575 45.455 0.00 0.00 0.00 3.91
3311 5809 2.019249 GCATTCATGGCAGTTCTAGCA 58.981 47.619 0.00 0.00 0.00 3.49
3312 5810 2.290093 GAGCATTCATGGCAGTTCTAGC 59.710 50.000 0.00 0.00 0.00 3.42
3313 5811 2.543012 CGAGCATTCATGGCAGTTCTAG 59.457 50.000 0.00 0.00 0.00 2.43
3314 5812 2.554142 CGAGCATTCATGGCAGTTCTA 58.446 47.619 0.00 0.00 0.00 2.10
3315 5813 1.376543 CGAGCATTCATGGCAGTTCT 58.623 50.000 0.00 0.00 0.00 3.01
3316 5814 0.379669 CCGAGCATTCATGGCAGTTC 59.620 55.000 0.00 0.00 0.00 3.01
3317 5815 0.322816 ACCGAGCATTCATGGCAGTT 60.323 50.000 0.00 0.00 0.00 3.16
3318 5816 0.541392 TACCGAGCATTCATGGCAGT 59.459 50.000 0.00 0.00 0.00 4.40
3320 5818 3.701205 ATATACCGAGCATTCATGGCA 57.299 42.857 0.00 0.00 0.00 4.92
3341 5839 8.567948 CCAGCGACCATATAAACATCTAAATTT 58.432 33.333 0.00 0.00 0.00 1.82
3342 5840 7.174946 CCCAGCGACCATATAAACATCTAAATT 59.825 37.037 0.00 0.00 0.00 1.82
3343 5841 6.655003 CCCAGCGACCATATAAACATCTAAAT 59.345 38.462 0.00 0.00 0.00 1.40
3344 5842 5.995282 CCCAGCGACCATATAAACATCTAAA 59.005 40.000 0.00 0.00 0.00 1.85
3345 5843 5.071250 ACCCAGCGACCATATAAACATCTAA 59.929 40.000 0.00 0.00 0.00 2.10
3346 5844 4.591498 ACCCAGCGACCATATAAACATCTA 59.409 41.667 0.00 0.00 0.00 1.98
3347 5845 3.391296 ACCCAGCGACCATATAAACATCT 59.609 43.478 0.00 0.00 0.00 2.90
3348 5846 3.498397 CACCCAGCGACCATATAAACATC 59.502 47.826 0.00 0.00 0.00 3.06
3349 5847 3.476552 CACCCAGCGACCATATAAACAT 58.523 45.455 0.00 0.00 0.00 2.71
3350 5848 2.912771 CACCCAGCGACCATATAAACA 58.087 47.619 0.00 0.00 0.00 2.83
3351 5849 1.602377 GCACCCAGCGACCATATAAAC 59.398 52.381 0.00 0.00 0.00 2.01
3353 5851 3.698250 GCACCCAGCGACCATATAA 57.302 52.632 0.00 0.00 0.00 0.98
3363 5861 3.322254 ACAGTATACTATGAGCACCCAGC 59.678 47.826 4.74 0.00 46.19 4.85
3365 5863 5.950544 AAACAGTATACTATGAGCACCCA 57.049 39.130 4.74 0.00 0.00 4.51
3367 5865 7.265673 TCTCAAAACAGTATACTATGAGCACC 58.734 38.462 21.06 0.00 0.00 5.01
3369 5867 7.124298 ACCTCTCAAAACAGTATACTATGAGCA 59.876 37.037 21.06 14.04 0.00 4.26
3370 5868 7.493367 ACCTCTCAAAACAGTATACTATGAGC 58.507 38.462 21.06 0.00 0.00 4.26
3371 5869 9.522804 GAACCTCTCAAAACAGTATACTATGAG 57.477 37.037 20.41 20.41 0.00 2.90
3372 5870 9.031537 TGAACCTCTCAAAACAGTATACTATGA 57.968 33.333 4.74 7.26 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.