Multiple sequence alignment - TraesCS1B01G103900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G103900 chr1B 100.000 2995 0 0 1 2995 113801580 113798586 0.000000e+00 5531.0
1 TraesCS1B01G103900 chr1B 86.500 600 68 4 292 888 635779822 635780411 0.000000e+00 647.0
2 TraesCS1B01G103900 chr1B 91.793 463 38 0 1757 2219 635780972 635781434 0.000000e+00 645.0
3 TraesCS1B01G103900 chr1B 87.253 455 37 7 1322 1762 635780473 635780920 1.600000e-137 499.0
4 TraesCS1B01G103900 chr1B 96.703 273 7 2 2725 2995 148989099 148988827 1.270000e-123 453.0
5 TraesCS1B01G103900 chr1B 96.337 273 9 1 2724 2995 544002028 544001756 5.890000e-122 448.0
6 TraesCS1B01G103900 chr1B 87.500 224 25 3 1997 2219 369637746 369637967 3.830000e-64 255.0
7 TraesCS1B01G103900 chr1B 95.833 48 2 0 1093 1140 635780415 635780462 8.900000e-11 78.7
8 TraesCS1B01G103900 chr1B 94.872 39 2 0 1550 1588 635780666 635780704 8.960000e-06 62.1
9 TraesCS1B01G103900 chr7B 96.750 1477 46 2 287 1762 61272658 61274133 0.000000e+00 2460.0
10 TraesCS1B01G103900 chr7B 86.957 851 88 11 292 1140 400626683 400625854 0.000000e+00 935.0
11 TraesCS1B01G103900 chr7B 96.328 463 17 0 1757 2219 61274185 61274647 0.000000e+00 761.0
12 TraesCS1B01G103900 chr7B 92.842 461 33 0 1760 2220 400625357 400624897 0.000000e+00 669.0
13 TraesCS1B01G103900 chr7B 82.372 607 59 28 1330 1909 400625834 400625249 4.490000e-133 484.0
14 TraesCS1B01G103900 chr6D 88.343 1973 168 32 287 2220 118741331 118743280 0.000000e+00 2313.0
15 TraesCS1B01G103900 chr6D 98.242 512 9 0 2219 2730 301960566 301961077 0.000000e+00 896.0
16 TraesCS1B01G103900 chr6D 98.242 512 9 0 2219 2730 375734801 375734290 0.000000e+00 896.0
17 TraesCS1B01G103900 chr6D 98.242 512 9 0 2219 2730 431693146 431692635 0.000000e+00 896.0
18 TraesCS1B01G103900 chr6D 99.301 286 2 0 1 286 381117525 381117810 4.430000e-143 518.0
19 TraesCS1B01G103900 chr6D 89.552 201 20 1 2016 2215 357238704 357238504 1.380000e-63 254.0
20 TraesCS1B01G103900 chr6D 86.385 213 28 1 2004 2215 272888988 272889200 6.460000e-57 231.0
21 TraesCS1B01G103900 chr6D 86.232 138 18 1 2022 2159 395697937 395697801 6.690000e-32 148.0
22 TraesCS1B01G103900 chr7A 97.200 1000 28 0 284 1283 109760591 109759592 0.000000e+00 1692.0
23 TraesCS1B01G103900 chr7A 90.203 592 38 12 1335 1909 109759588 109759000 0.000000e+00 754.0
24 TraesCS1B01G103900 chr7A 98.722 313 4 0 1760 2072 109759108 109758796 9.380000e-155 556.0
25 TraesCS1B01G103900 chr2D 86.585 1476 147 31 459 1909 584837569 584836120 0.000000e+00 1581.0
26 TraesCS1B01G103900 chr2D 98.438 512 8 0 2219 2730 561666907 561667418 0.000000e+00 902.0
27 TraesCS1B01G103900 chr2D 93.709 461 29 0 1760 2220 584836228 584835768 0.000000e+00 691.0
28 TraesCS1B01G103900 chr2D 99.650 286 1 0 1 286 163813406 163813691 9.510000e-145 523.0
29 TraesCS1B01G103900 chr2D 99.301 286 2 0 1 286 469577702 469577987 4.430000e-143 518.0
30 TraesCS1B01G103900 chr2D 89.055 201 21 1 2016 2215 395184136 395184336 6.410000e-62 248.0
31 TraesCS1B01G103900 chr3B 95.539 964 40 1 425 1388 582974178 582973218 0.000000e+00 1539.0
32 TraesCS1B01G103900 chr3B 94.268 628 20 3 295 922 795283571 795282960 0.000000e+00 946.0
33 TraesCS1B01G103900 chr3B 97.685 432 9 1 1331 1762 795282936 795282506 0.000000e+00 741.0
34 TraesCS1B01G103900 chr3B 93.043 460 11 1 1760 2219 795282451 795282013 0.000000e+00 652.0
35 TraesCS1B01G103900 chr3B 95.801 381 13 3 1840 2220 829566175 829566552 1.970000e-171 612.0
36 TraesCS1B01G103900 chr3B 97.736 265 6 0 2731 2995 246366005 246366269 9.790000e-125 457.0
37 TraesCS1B01G103900 chr3B 97.368 266 7 0 2730 2995 481985415 481985680 1.270000e-123 453.0
38 TraesCS1B01G103900 chr3B 94.894 235 11 1 330 563 582974409 582974175 1.700000e-97 366.0
39 TraesCS1B01G103900 chr5A 85.130 1076 103 18 308 1373 355769875 355770903 0.000000e+00 1048.0
40 TraesCS1B01G103900 chr5A 88.817 465 36 3 1757 2221 355771312 355771760 9.380000e-155 556.0
41 TraesCS1B01G103900 chr5A 93.352 361 23 1 1402 1762 355770901 355771260 1.580000e-147 532.0
42 TraesCS1B01G103900 chr5A 88.517 209 22 2 2014 2221 659958646 659958439 4.960000e-63 252.0
43 TraesCS1B01G103900 chr3D 98.633 512 7 0 2219 2730 67251705 67252216 0.000000e+00 907.0
44 TraesCS1B01G103900 chr3D 89.767 215 20 2 2005 2219 82729180 82728968 1.060000e-69 274.0
45 TraesCS1B01G103900 chr3D 87.324 213 26 1 2004 2215 203980841 203980629 2.980000e-60 243.0
46 TraesCS1B01G103900 chr7D 98.438 512 8 0 2219 2730 69966054 69966565 0.000000e+00 902.0
47 TraesCS1B01G103900 chr7D 99.301 286 2 0 1 286 69965777 69966062 4.430000e-143 518.0
48 TraesCS1B01G103900 chr7D 99.301 286 2 0 1 286 454041785 454041500 4.430000e-143 518.0
49 TraesCS1B01G103900 chr7D 99.301 286 2 0 1 286 593844988 593845273 4.430000e-143 518.0
50 TraesCS1B01G103900 chr7D 86.207 203 27 1 2022 2224 159110919 159110718 5.030000e-53 219.0
51 TraesCS1B01G103900 chr5D 98.438 512 8 0 2219 2730 318579344 318578833 0.000000e+00 902.0
52 TraesCS1B01G103900 chr5D 98.438 512 8 0 2219 2730 420839479 420838968 0.000000e+00 902.0
53 TraesCS1B01G103900 chr5D 99.301 286 2 0 1 286 487095418 487095133 4.430000e-143 518.0
54 TraesCS1B01G103900 chr5D 99.301 286 2 0 1 286 546613502 546613217 4.430000e-143 518.0
55 TraesCS1B01G103900 chr5D 84.581 227 24 7 1991 2215 518626154 518625937 6.500000e-52 215.0
56 TraesCS1B01G103900 chr5D 85.354 198 28 1 2022 2219 358652269 358652073 1.410000e-48 204.0
57 TraesCS1B01G103900 chr4D 98.242 512 9 0 2219 2730 44951350 44950839 0.000000e+00 896.0
58 TraesCS1B01G103900 chr4D 86.364 198 26 1 2022 2219 69762885 69763081 6.500000e-52 215.0
59 TraesCS1B01G103900 chr4D 85.227 176 19 2 2044 2219 93394971 93395139 1.100000e-39 174.0
60 TraesCS1B01G103900 chr5B 85.881 857 74 14 311 1140 395677461 395676625 0.000000e+00 869.0
61 TraesCS1B01G103900 chr5B 92.191 461 36 0 1760 2220 395676084 395675624 0.000000e+00 652.0
62 TraesCS1B01G103900 chr5B 82.439 615 60 25 1322 1909 395676569 395675976 7.460000e-136 494.0
63 TraesCS1B01G103900 chr5B 97.015 268 8 0 2728 2995 86091097 86091364 4.550000e-123 451.0
64 TraesCS1B01G103900 chr5B 88.000 225 23 4 1995 2216 597325834 597326057 2.290000e-66 263.0
65 TraesCS1B01G103900 chr5B 94.872 39 2 0 1550 1588 395676393 395676355 8.960000e-06 62.1
66 TraesCS1B01G103900 chr2B 96.746 461 15 0 1760 2220 600997148 600996688 0.000000e+00 769.0
67 TraesCS1B01G103900 chr2B 98.120 266 4 1 2731 2995 478712132 478712397 2.100000e-126 462.0
68 TraesCS1B01G103900 chr2B 96.350 274 10 0 287 560 600997496 600997223 4.550000e-123 451.0
69 TraesCS1B01G103900 chr2B 96.337 273 10 0 2723 2995 242580866 242580594 1.640000e-122 449.0
70 TraesCS1B01G103900 chr2B 96.667 270 9 0 2726 2995 526904191 526904460 1.640000e-122 449.0
71 TraesCS1B01G103900 chr2B 86.454 251 32 2 1968 2217 258095672 258095921 1.060000e-69 274.0
72 TraesCS1B01G103900 chr2B 75.758 198 33 13 1720 1909 600997230 600997040 5.320000e-13 86.1
73 TraesCS1B01G103900 chr1D 99.301 286 2 0 1 286 234972982 234973267 4.430000e-143 518.0
74 TraesCS1B01G103900 chr1D 88.235 204 23 1 2013 2215 396861859 396861656 2.980000e-60 243.0
75 TraesCS1B01G103900 chr1D 89.674 184 18 1 2016 2198 170205959 170205776 1.800000e-57 233.0
76 TraesCS1B01G103900 chr1D 85.714 203 28 1 2022 2224 324499938 324499737 2.340000e-51 213.0
77 TraesCS1B01G103900 chr4B 97.736 265 6 0 2731 2995 138899062 138899326 9.790000e-125 457.0
78 TraesCS1B01G103900 chr4B 88.482 191 20 2 2037 2226 68445736 68445547 2.320000e-56 230.0
79 TraesCS1B01G103900 chr4B 79.863 293 36 15 1637 1909 493801786 493801497 3.050000e-45 193.0
80 TraesCS1B01G103900 chr6A 84.082 245 25 10 1977 2217 56261292 56261526 1.080000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G103900 chr1B 113798586 113801580 2994 True 5531.000000 5531 100.000000 1 2995 1 chr1B.!!$R1 2994
1 TraesCS1B01G103900 chr1B 635779822 635781434 1612 False 386.360000 647 91.250200 292 2219 5 chr1B.!!$F2 1927
2 TraesCS1B01G103900 chr7B 61272658 61274647 1989 False 1610.500000 2460 96.539000 287 2219 2 chr7B.!!$F1 1932
3 TraesCS1B01G103900 chr7B 400624897 400626683 1786 True 696.000000 935 87.390333 292 2220 3 chr7B.!!$R1 1928
4 TraesCS1B01G103900 chr6D 118741331 118743280 1949 False 2313.000000 2313 88.343000 287 2220 1 chr6D.!!$F1 1933
5 TraesCS1B01G103900 chr6D 301960566 301961077 511 False 896.000000 896 98.242000 2219 2730 1 chr6D.!!$F3 511
6 TraesCS1B01G103900 chr6D 375734290 375734801 511 True 896.000000 896 98.242000 2219 2730 1 chr6D.!!$R2 511
7 TraesCS1B01G103900 chr6D 431692635 431693146 511 True 896.000000 896 98.242000 2219 2730 1 chr6D.!!$R4 511
8 TraesCS1B01G103900 chr7A 109758796 109760591 1795 True 1000.666667 1692 95.375000 284 2072 3 chr7A.!!$R1 1788
9 TraesCS1B01G103900 chr2D 584835768 584837569 1801 True 1136.000000 1581 90.147000 459 2220 2 chr2D.!!$R1 1761
10 TraesCS1B01G103900 chr2D 561666907 561667418 511 False 902.000000 902 98.438000 2219 2730 1 chr2D.!!$F4 511
11 TraesCS1B01G103900 chr3B 582973218 582974409 1191 True 952.500000 1539 95.216500 330 1388 2 chr3B.!!$R1 1058
12 TraesCS1B01G103900 chr3B 795282013 795283571 1558 True 779.666667 946 94.998667 295 2219 3 chr3B.!!$R2 1924
13 TraesCS1B01G103900 chr5A 355769875 355771760 1885 False 712.000000 1048 89.099667 308 2221 3 chr5A.!!$F1 1913
14 TraesCS1B01G103900 chr3D 67251705 67252216 511 False 907.000000 907 98.633000 2219 2730 1 chr3D.!!$F1 511
15 TraesCS1B01G103900 chr7D 69965777 69966565 788 False 710.000000 902 98.869500 1 2730 2 chr7D.!!$F2 2729
16 TraesCS1B01G103900 chr5D 318578833 318579344 511 True 902.000000 902 98.438000 2219 2730 1 chr5D.!!$R1 511
17 TraesCS1B01G103900 chr5D 420838968 420839479 511 True 902.000000 902 98.438000 2219 2730 1 chr5D.!!$R3 511
18 TraesCS1B01G103900 chr4D 44950839 44951350 511 True 896.000000 896 98.242000 2219 2730 1 chr4D.!!$R1 511
19 TraesCS1B01G103900 chr5B 395675624 395677461 1837 True 519.275000 869 88.845750 311 2220 4 chr5B.!!$R1 1909
20 TraesCS1B01G103900 chr2B 600996688 600997496 808 True 435.366667 769 89.618000 287 2220 3 chr2B.!!$R2 1933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.03759 GTTATGTGTGGTGGGGCTGA 59.962 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 2549 0.03309 GTCTGTTCGGTCCGGTCTTT 59.967 55.0 12.29 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 1.147600 GTCAACGGGAACTGGGTGT 59.852 57.895 0.00 0.00 40.47 4.16
137 138 0.883370 GTCAACGGGAACTGGGTGTC 60.883 60.000 0.00 0.00 40.47 3.67
138 139 1.052124 TCAACGGGAACTGGGTGTCT 61.052 55.000 0.00 0.00 40.47 3.41
139 140 0.682852 CAACGGGAACTGGGTGTCTA 59.317 55.000 0.00 0.00 40.47 2.59
140 141 1.278127 CAACGGGAACTGGGTGTCTAT 59.722 52.381 0.00 0.00 40.47 1.98
141 142 1.192428 ACGGGAACTGGGTGTCTATC 58.808 55.000 0.00 0.00 40.47 2.08
142 143 1.273098 ACGGGAACTGGGTGTCTATCT 60.273 52.381 0.00 0.00 40.47 1.98
143 144 1.137086 CGGGAACTGGGTGTCTATCTG 59.863 57.143 0.00 0.00 0.00 2.90
144 145 1.134371 GGGAACTGGGTGTCTATCTGC 60.134 57.143 0.00 0.00 0.00 4.26
145 146 1.834263 GGAACTGGGTGTCTATCTGCT 59.166 52.381 0.00 0.00 0.00 4.24
146 147 2.419297 GGAACTGGGTGTCTATCTGCTG 60.419 54.545 0.00 0.00 0.00 4.41
147 148 1.198713 ACTGGGTGTCTATCTGCTGG 58.801 55.000 0.00 0.00 0.00 4.85
148 149 0.467384 CTGGGTGTCTATCTGCTGGG 59.533 60.000 0.00 0.00 0.00 4.45
149 150 0.982852 TGGGTGTCTATCTGCTGGGG 60.983 60.000 0.00 0.00 0.00 4.96
150 151 0.983378 GGGTGTCTATCTGCTGGGGT 60.983 60.000 0.00 0.00 0.00 4.95
151 152 0.912486 GGTGTCTATCTGCTGGGGTT 59.088 55.000 0.00 0.00 0.00 4.11
152 153 1.407437 GGTGTCTATCTGCTGGGGTTG 60.407 57.143 0.00 0.00 0.00 3.77
153 154 0.911769 TGTCTATCTGCTGGGGTTGG 59.088 55.000 0.00 0.00 0.00 3.77
154 155 0.181350 GTCTATCTGCTGGGGTTGGG 59.819 60.000 0.00 0.00 0.00 4.12
155 156 0.988145 TCTATCTGCTGGGGTTGGGG 60.988 60.000 0.00 0.00 0.00 4.96
156 157 1.230149 TATCTGCTGGGGTTGGGGT 60.230 57.895 0.00 0.00 0.00 4.95
157 158 0.849094 TATCTGCTGGGGTTGGGGTT 60.849 55.000 0.00 0.00 0.00 4.11
158 159 0.849094 ATCTGCTGGGGTTGGGGTTA 60.849 55.000 0.00 0.00 0.00 2.85
159 160 1.000896 CTGCTGGGGTTGGGGTTAG 60.001 63.158 0.00 0.00 0.00 2.34
160 161 1.464395 TGCTGGGGTTGGGGTTAGA 60.464 57.895 0.00 0.00 0.00 2.10
161 162 1.068943 TGCTGGGGTTGGGGTTAGAA 61.069 55.000 0.00 0.00 0.00 2.10
162 163 0.323451 GCTGGGGTTGGGGTTAGAAG 60.323 60.000 0.00 0.00 0.00 2.85
163 164 0.331616 CTGGGGTTGGGGTTAGAAGG 59.668 60.000 0.00 0.00 0.00 3.46
164 165 1.143970 TGGGGTTGGGGTTAGAAGGG 61.144 60.000 0.00 0.00 0.00 3.95
165 166 1.695465 GGGTTGGGGTTAGAAGGGG 59.305 63.158 0.00 0.00 0.00 4.79
166 167 1.144612 GGGTTGGGGTTAGAAGGGGT 61.145 60.000 0.00 0.00 0.00 4.95
167 168 0.039180 GGTTGGGGTTAGAAGGGGTG 59.961 60.000 0.00 0.00 0.00 4.61
168 169 0.775542 GTTGGGGTTAGAAGGGGTGT 59.224 55.000 0.00 0.00 0.00 4.16
169 170 1.987368 GTTGGGGTTAGAAGGGGTGTA 59.013 52.381 0.00 0.00 0.00 2.90
170 171 1.961133 TGGGGTTAGAAGGGGTGTAG 58.039 55.000 0.00 0.00 0.00 2.74
171 172 0.545171 GGGGTTAGAAGGGGTGTAGC 59.455 60.000 0.00 0.00 0.00 3.58
172 173 1.581223 GGGTTAGAAGGGGTGTAGCT 58.419 55.000 0.00 0.00 0.00 3.32
173 174 1.209747 GGGTTAGAAGGGGTGTAGCTG 59.790 57.143 0.00 0.00 0.00 4.24
174 175 1.209747 GGTTAGAAGGGGTGTAGCTGG 59.790 57.143 0.00 0.00 0.00 4.85
175 176 1.907255 GTTAGAAGGGGTGTAGCTGGT 59.093 52.381 0.00 0.00 0.00 4.00
176 177 2.305052 GTTAGAAGGGGTGTAGCTGGTT 59.695 50.000 0.00 0.00 0.00 3.67
177 178 0.984995 AGAAGGGGTGTAGCTGGTTC 59.015 55.000 0.00 0.00 0.00 3.62
178 179 0.984995 GAAGGGGTGTAGCTGGTTCT 59.015 55.000 0.00 0.00 0.00 3.01
179 180 0.984995 AAGGGGTGTAGCTGGTTCTC 59.015 55.000 0.00 0.00 0.00 2.87
180 181 0.117340 AGGGGTGTAGCTGGTTCTCT 59.883 55.000 0.00 0.00 0.00 3.10
181 182 0.250513 GGGGTGTAGCTGGTTCTCTG 59.749 60.000 0.00 0.00 0.00 3.35
182 183 0.977395 GGGTGTAGCTGGTTCTCTGT 59.023 55.000 0.00 0.00 0.00 3.41
183 184 1.066787 GGGTGTAGCTGGTTCTCTGTC 60.067 57.143 0.00 0.00 0.00 3.51
184 185 1.066787 GGTGTAGCTGGTTCTCTGTCC 60.067 57.143 0.00 0.00 0.00 4.02
185 186 1.618837 GTGTAGCTGGTTCTCTGTCCA 59.381 52.381 0.00 0.00 0.00 4.02
186 187 2.037251 GTGTAGCTGGTTCTCTGTCCAA 59.963 50.000 0.00 0.00 33.06 3.53
187 188 2.037251 TGTAGCTGGTTCTCTGTCCAAC 59.963 50.000 0.00 0.00 33.06 3.77
188 189 1.428869 AGCTGGTTCTCTGTCCAACT 58.571 50.000 0.00 0.00 33.06 3.16
189 190 1.071385 AGCTGGTTCTCTGTCCAACTG 59.929 52.381 0.00 0.00 30.28 3.16
190 191 1.879796 GCTGGTTCTCTGTCCAACTGG 60.880 57.143 0.00 0.00 33.06 4.00
191 192 0.764890 TGGTTCTCTGTCCAACTGGG 59.235 55.000 0.00 0.00 35.41 4.45
192 193 0.765510 GGTTCTCTGTCCAACTGGGT 59.234 55.000 0.00 0.00 38.11 4.51
193 194 1.975680 GGTTCTCTGTCCAACTGGGTA 59.024 52.381 0.00 0.00 38.11 3.69
194 195 2.028020 GGTTCTCTGTCCAACTGGGTAG 60.028 54.545 0.00 0.00 38.11 3.18
195 196 2.897969 GTTCTCTGTCCAACTGGGTAGA 59.102 50.000 0.00 0.01 38.11 2.59
196 197 2.808919 TCTCTGTCCAACTGGGTAGAG 58.191 52.381 17.27 17.27 43.86 2.43
197 198 1.827969 CTCTGTCCAACTGGGTAGAGG 59.172 57.143 16.29 0.00 41.35 3.69
198 199 1.149288 TCTGTCCAACTGGGTAGAGGT 59.851 52.381 0.00 0.00 38.11 3.85
199 200 2.380932 TCTGTCCAACTGGGTAGAGGTA 59.619 50.000 0.00 0.00 38.11 3.08
200 201 2.496470 CTGTCCAACTGGGTAGAGGTAC 59.504 54.545 0.00 0.00 38.11 3.34
201 202 2.158279 TGTCCAACTGGGTAGAGGTACA 60.158 50.000 0.00 0.00 38.11 2.90
202 203 2.901839 GTCCAACTGGGTAGAGGTACAA 59.098 50.000 0.00 0.00 38.11 2.41
203 204 3.518303 GTCCAACTGGGTAGAGGTACAAT 59.482 47.826 0.00 0.00 38.11 2.71
204 205 3.773119 TCCAACTGGGTAGAGGTACAATC 59.227 47.826 0.00 0.00 38.11 2.67
205 206 3.775316 CCAACTGGGTAGAGGTACAATCT 59.225 47.826 5.31 5.31 0.00 2.40
206 207 4.383118 CCAACTGGGTAGAGGTACAATCTG 60.383 50.000 9.47 0.00 0.00 2.90
207 208 2.766828 ACTGGGTAGAGGTACAATCTGC 59.233 50.000 9.47 8.10 0.00 4.26
208 209 2.766263 CTGGGTAGAGGTACAATCTGCA 59.234 50.000 14.39 0.00 31.71 4.41
209 210 3.384168 TGGGTAGAGGTACAATCTGCAT 58.616 45.455 14.39 0.00 31.71 3.96
210 211 3.134623 TGGGTAGAGGTACAATCTGCATG 59.865 47.826 14.39 0.00 31.71 4.06
211 212 3.388024 GGGTAGAGGTACAATCTGCATGA 59.612 47.826 14.39 0.00 31.71 3.07
212 213 4.502259 GGGTAGAGGTACAATCTGCATGAG 60.502 50.000 14.39 0.00 31.71 2.90
213 214 4.100189 GGTAGAGGTACAATCTGCATGAGT 59.900 45.833 14.39 0.00 31.71 3.41
214 215 4.134379 AGAGGTACAATCTGCATGAGTG 57.866 45.455 0.00 10.63 45.27 3.51
219 220 1.830279 CAATCTGCATGAGTGTGGGT 58.170 50.000 0.00 0.00 36.17 4.51
220 221 2.165167 CAATCTGCATGAGTGTGGGTT 58.835 47.619 0.00 0.00 36.17 4.11
221 222 3.346315 CAATCTGCATGAGTGTGGGTTA 58.654 45.455 0.00 0.00 36.17 2.85
222 223 3.939740 ATCTGCATGAGTGTGGGTTAT 57.060 42.857 0.00 0.00 0.00 1.89
223 224 2.989909 TCTGCATGAGTGTGGGTTATG 58.010 47.619 0.00 0.00 0.00 1.90
224 225 2.305635 TCTGCATGAGTGTGGGTTATGT 59.694 45.455 0.00 0.00 0.00 2.29
225 226 2.421073 CTGCATGAGTGTGGGTTATGTG 59.579 50.000 0.00 0.00 0.00 3.21
226 227 2.224744 TGCATGAGTGTGGGTTATGTGT 60.225 45.455 0.00 0.00 0.00 3.72
227 228 2.162208 GCATGAGTGTGGGTTATGTGTG 59.838 50.000 0.00 0.00 0.00 3.82
228 229 2.559698 TGAGTGTGGGTTATGTGTGG 57.440 50.000 0.00 0.00 0.00 4.17
229 230 1.771854 TGAGTGTGGGTTATGTGTGGT 59.228 47.619 0.00 0.00 0.00 4.16
230 231 2.151202 GAGTGTGGGTTATGTGTGGTG 58.849 52.381 0.00 0.00 0.00 4.17
231 232 1.202879 AGTGTGGGTTATGTGTGGTGG 60.203 52.381 0.00 0.00 0.00 4.61
232 233 0.111446 TGTGGGTTATGTGTGGTGGG 59.889 55.000 0.00 0.00 0.00 4.61
233 234 0.610785 GTGGGTTATGTGTGGTGGGG 60.611 60.000 0.00 0.00 0.00 4.96
234 235 1.680989 GGGTTATGTGTGGTGGGGC 60.681 63.158 0.00 0.00 0.00 5.80
235 236 1.382629 GGTTATGTGTGGTGGGGCT 59.617 57.895 0.00 0.00 0.00 5.19
236 237 0.965363 GGTTATGTGTGGTGGGGCTG 60.965 60.000 0.00 0.00 0.00 4.85
237 238 0.037590 GTTATGTGTGGTGGGGCTGA 59.962 55.000 0.00 0.00 0.00 4.26
238 239 0.998928 TTATGTGTGGTGGGGCTGAT 59.001 50.000 0.00 0.00 0.00 2.90
239 240 0.998928 TATGTGTGGTGGGGCTGATT 59.001 50.000 0.00 0.00 0.00 2.57
240 241 0.323725 ATGTGTGGTGGGGCTGATTC 60.324 55.000 0.00 0.00 0.00 2.52
241 242 1.380302 GTGTGGTGGGGCTGATTCT 59.620 57.895 0.00 0.00 0.00 2.40
242 243 0.251341 GTGTGGTGGGGCTGATTCTT 60.251 55.000 0.00 0.00 0.00 2.52
243 244 0.251297 TGTGGTGGGGCTGATTCTTG 60.251 55.000 0.00 0.00 0.00 3.02
244 245 0.967380 GTGGTGGGGCTGATTCTTGG 60.967 60.000 0.00 0.00 0.00 3.61
245 246 1.380380 GGTGGGGCTGATTCTTGGG 60.380 63.158 0.00 0.00 0.00 4.12
246 247 2.054453 GTGGGGCTGATTCTTGGGC 61.054 63.158 0.00 0.00 0.00 5.36
247 248 2.360191 GGGGCTGATTCTTGGGCA 59.640 61.111 0.00 0.00 0.00 5.36
248 249 1.305213 GGGGCTGATTCTTGGGCAA 60.305 57.895 0.00 0.00 0.00 4.52
249 250 1.325476 GGGGCTGATTCTTGGGCAAG 61.325 60.000 0.00 0.00 39.71 4.01
250 251 0.613012 GGGCTGATTCTTGGGCAAGT 60.613 55.000 0.00 0.00 39.38 3.16
251 252 1.340991 GGGCTGATTCTTGGGCAAGTA 60.341 52.381 0.00 0.00 39.38 2.24
252 253 1.745653 GGCTGATTCTTGGGCAAGTAC 59.254 52.381 0.00 0.00 39.38 2.73
253 254 2.436417 GCTGATTCTTGGGCAAGTACA 58.564 47.619 0.00 0.00 39.38 2.90
254 255 2.819608 GCTGATTCTTGGGCAAGTACAA 59.180 45.455 0.00 0.00 39.38 2.41
255 256 3.366374 GCTGATTCTTGGGCAAGTACAAC 60.366 47.826 0.00 0.00 39.38 3.32
256 257 3.153919 TGATTCTTGGGCAAGTACAACC 58.846 45.455 0.00 0.00 39.38 3.77
257 258 1.600023 TTCTTGGGCAAGTACAACCG 58.400 50.000 0.00 0.00 39.38 4.44
258 259 0.470766 TCTTGGGCAAGTACAACCGT 59.529 50.000 0.00 0.00 39.38 4.83
259 260 0.591170 CTTGGGCAAGTACAACCGTG 59.409 55.000 0.00 0.00 33.87 4.94
260 261 0.820074 TTGGGCAAGTACAACCGTGG 60.820 55.000 0.00 0.00 0.00 4.94
261 262 1.228033 GGGCAAGTACAACCGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
262 263 0.820482 GGGCAAGTACAACCGTGGTT 60.820 55.000 0.00 0.00 39.13 3.67
263 264 0.589708 GGCAAGTACAACCGTGGTTC 59.410 55.000 0.16 0.00 36.00 3.62
264 265 1.589803 GCAAGTACAACCGTGGTTCT 58.410 50.000 0.16 0.00 36.00 3.01
265 266 2.548493 GGCAAGTACAACCGTGGTTCTA 60.548 50.000 0.16 0.00 36.00 2.10
266 267 3.332034 GCAAGTACAACCGTGGTTCTAT 58.668 45.455 0.16 0.00 36.00 1.98
267 268 3.370061 GCAAGTACAACCGTGGTTCTATC 59.630 47.826 0.16 0.00 36.00 2.08
268 269 4.817517 CAAGTACAACCGTGGTTCTATCT 58.182 43.478 0.16 0.00 36.00 1.98
269 270 4.451629 AGTACAACCGTGGTTCTATCTG 57.548 45.455 0.16 0.00 36.00 2.90
270 271 2.094762 ACAACCGTGGTTCTATCTGC 57.905 50.000 0.16 0.00 36.00 4.26
271 272 1.346395 ACAACCGTGGTTCTATCTGCA 59.654 47.619 0.16 0.00 36.00 4.41
272 273 2.027192 ACAACCGTGGTTCTATCTGCAT 60.027 45.455 0.16 0.00 36.00 3.96
273 274 2.604046 ACCGTGGTTCTATCTGCATC 57.396 50.000 0.00 0.00 0.00 3.91
274 275 1.202417 ACCGTGGTTCTATCTGCATCG 60.202 52.381 0.00 0.00 0.00 3.84
275 276 1.067060 CCGTGGTTCTATCTGCATCGA 59.933 52.381 0.00 0.00 0.00 3.59
276 277 2.120232 CGTGGTTCTATCTGCATCGAC 58.880 52.381 0.00 0.00 0.00 4.20
277 278 2.479560 CGTGGTTCTATCTGCATCGACA 60.480 50.000 0.00 0.00 0.00 4.35
278 279 3.119291 GTGGTTCTATCTGCATCGACAG 58.881 50.000 0.00 0.00 39.12 3.51
279 280 2.101415 TGGTTCTATCTGCATCGACAGG 59.899 50.000 3.46 0.00 38.26 4.00
280 281 2.101582 GGTTCTATCTGCATCGACAGGT 59.898 50.000 3.46 0.00 38.26 4.00
281 282 3.318275 GGTTCTATCTGCATCGACAGGTA 59.682 47.826 3.46 0.19 38.26 3.08
290 291 0.452184 ATCGACAGGTAGCACTCACG 59.548 55.000 0.00 0.00 0.00 4.35
366 368 5.522456 ACCCGAAAAGACCGAATTAAAAAC 58.478 37.500 0.00 0.00 0.00 2.43
462 464 5.014858 GGACCGAATAGACCATATAGACCA 58.985 45.833 0.00 0.00 0.00 4.02
603 742 3.320610 TCCTCTTATCCTCTCCCACTG 57.679 52.381 0.00 0.00 0.00 3.66
981 1184 4.662961 CGACACAGCCGTCCAGCA 62.663 66.667 0.00 0.00 34.23 4.41
1273 1477 2.291209 AATCATGTGAGCACACCCAA 57.709 45.000 11.92 0.00 45.05 4.12
1300 1504 3.131709 AGCCATCTAAATCCATGTCCG 57.868 47.619 0.00 0.00 0.00 4.79
1633 1899 5.948992 ACTTTTCCATGAACTAGCAGAAC 57.051 39.130 0.00 0.00 0.00 3.01
1837 2160 6.589523 TGTCAAATATAAATGGTGTTGCTTGC 59.410 34.615 0.00 0.00 0.00 4.01
2069 2444 0.547075 TTTGGTCTGTTTGGTCGGGA 59.453 50.000 0.00 0.00 0.00 5.14
2082 2457 2.474410 GTCGGGACCAAAGACTGAAT 57.526 50.000 0.00 0.00 32.58 2.57
2083 2458 2.779506 GTCGGGACCAAAGACTGAATT 58.220 47.619 0.00 0.00 32.58 2.17
2084 2459 2.484264 GTCGGGACCAAAGACTGAATTG 59.516 50.000 0.00 0.00 32.58 2.32
2085 2460 2.105821 TCGGGACCAAAGACTGAATTGT 59.894 45.455 0.00 0.00 0.00 2.71
2086 2461 3.325425 TCGGGACCAAAGACTGAATTGTA 59.675 43.478 0.00 0.00 0.00 2.41
2087 2462 4.069304 CGGGACCAAAGACTGAATTGTAA 58.931 43.478 0.00 0.00 0.00 2.41
2088 2463 4.517453 CGGGACCAAAGACTGAATTGTAAA 59.483 41.667 0.00 0.00 0.00 2.01
2089 2464 5.334879 CGGGACCAAAGACTGAATTGTAAAG 60.335 44.000 0.00 0.00 0.00 1.85
2090 2465 5.768164 GGGACCAAAGACTGAATTGTAAAGA 59.232 40.000 0.00 0.00 0.00 2.52
2091 2466 6.294010 GGGACCAAAGACTGAATTGTAAAGAC 60.294 42.308 0.00 0.00 0.00 3.01
2092 2467 6.294010 GGACCAAAGACTGAATTGTAAAGACC 60.294 42.308 0.00 0.00 0.00 3.85
2093 2468 5.238650 ACCAAAGACTGAATTGTAAAGACCG 59.761 40.000 0.00 0.00 0.00 4.79
2094 2469 5.468746 CCAAAGACTGAATTGTAAAGACCGA 59.531 40.000 0.00 0.00 0.00 4.69
2095 2470 6.017440 CCAAAGACTGAATTGTAAAGACCGAA 60.017 38.462 0.00 0.00 0.00 4.30
2096 2471 6.787085 AAGACTGAATTGTAAAGACCGAAG 57.213 37.500 0.00 0.00 0.00 3.79
2097 2472 6.097915 AGACTGAATTGTAAAGACCGAAGA 57.902 37.500 0.00 0.00 0.00 2.87
2098 2473 5.927115 AGACTGAATTGTAAAGACCGAAGAC 59.073 40.000 0.00 0.00 0.00 3.01
2099 2474 4.995487 ACTGAATTGTAAAGACCGAAGACC 59.005 41.667 0.00 0.00 0.00 3.85
2100 2475 3.991773 TGAATTGTAAAGACCGAAGACCG 59.008 43.478 0.00 0.00 38.18 4.79
2101 2476 3.947910 ATTGTAAAGACCGAAGACCGA 57.052 42.857 0.00 0.00 41.76 4.69
2102 2477 3.731652 TTGTAAAGACCGAAGACCGAA 57.268 42.857 0.00 0.00 41.76 4.30
2103 2478 3.947910 TGTAAAGACCGAAGACCGAAT 57.052 42.857 0.00 0.00 41.76 3.34
2104 2479 5.389859 TTGTAAAGACCGAAGACCGAATA 57.610 39.130 0.00 0.00 41.76 1.75
2105 2480 4.990257 TGTAAAGACCGAAGACCGAATAG 58.010 43.478 0.00 0.00 41.76 1.73
2106 2481 4.460382 TGTAAAGACCGAAGACCGAATAGT 59.540 41.667 0.00 0.00 41.76 2.12
2107 2482 4.532314 AAAGACCGAAGACCGAATAGTT 57.468 40.909 0.00 0.00 41.76 2.24
2108 2483 5.649782 AAAGACCGAAGACCGAATAGTTA 57.350 39.130 0.00 0.00 41.76 2.24
2109 2484 5.649782 AAGACCGAAGACCGAATAGTTAA 57.350 39.130 0.00 0.00 41.76 2.01
2110 2485 5.246145 AGACCGAAGACCGAATAGTTAAG 57.754 43.478 0.00 0.00 41.76 1.85
2111 2486 4.946157 AGACCGAAGACCGAATAGTTAAGA 59.054 41.667 0.00 0.00 41.76 2.10
2112 2487 5.416952 AGACCGAAGACCGAATAGTTAAGAA 59.583 40.000 0.00 0.00 41.76 2.52
2113 2488 5.405797 ACCGAAGACCGAATAGTTAAGAAC 58.594 41.667 0.00 0.00 41.76 3.01
2114 2489 4.802563 CCGAAGACCGAATAGTTAAGAACC 59.197 45.833 0.00 0.00 41.76 3.62
2115 2490 4.498323 CGAAGACCGAATAGTTAAGAACCG 59.502 45.833 0.00 0.00 41.76 4.44
2116 2491 5.644644 GAAGACCGAATAGTTAAGAACCGA 58.355 41.667 0.00 0.00 0.00 4.69
2117 2492 5.649782 AGACCGAATAGTTAAGAACCGAA 57.350 39.130 0.00 0.00 0.00 4.30
2118 2493 6.029346 AGACCGAATAGTTAAGAACCGAAA 57.971 37.500 0.00 0.00 0.00 3.46
2119 2494 6.458210 AGACCGAATAGTTAAGAACCGAAAA 58.542 36.000 0.00 0.00 0.00 2.29
2120 2495 6.589139 AGACCGAATAGTTAAGAACCGAAAAG 59.411 38.462 0.00 0.00 0.00 2.27
2121 2496 6.458210 ACCGAATAGTTAAGAACCGAAAAGA 58.542 36.000 0.00 0.00 0.00 2.52
2122 2497 6.367149 ACCGAATAGTTAAGAACCGAAAAGAC 59.633 38.462 0.00 0.00 0.00 3.01
2123 2498 6.183360 CCGAATAGTTAAGAACCGAAAAGACC 60.183 42.308 0.00 0.00 0.00 3.85
2124 2499 6.453396 CGAATAGTTAAGAACCGAAAAGACCG 60.453 42.308 0.00 0.00 0.00 4.79
2125 2500 4.326504 AGTTAAGAACCGAAAAGACCGA 57.673 40.909 0.00 0.00 0.00 4.69
2126 2501 4.696455 AGTTAAGAACCGAAAAGACCGAA 58.304 39.130 0.00 0.00 0.00 4.30
2127 2502 5.118286 AGTTAAGAACCGAAAAGACCGAAA 58.882 37.500 0.00 0.00 0.00 3.46
2128 2503 5.761726 AGTTAAGAACCGAAAAGACCGAAAT 59.238 36.000 0.00 0.00 0.00 2.17
2129 2504 6.261603 AGTTAAGAACCGAAAAGACCGAAATT 59.738 34.615 0.00 0.00 0.00 1.82
2130 2505 7.442062 AGTTAAGAACCGAAAAGACCGAAATTA 59.558 33.333 0.00 0.00 0.00 1.40
2131 2506 6.812879 AAGAACCGAAAAGACCGAAATTAT 57.187 33.333 0.00 0.00 0.00 1.28
2132 2507 6.812879 AGAACCGAAAAGACCGAAATTATT 57.187 33.333 0.00 0.00 0.00 1.40
2133 2508 7.210718 AGAACCGAAAAGACCGAAATTATTT 57.789 32.000 0.00 0.00 0.00 1.40
2134 2509 7.303261 AGAACCGAAAAGACCGAAATTATTTC 58.697 34.615 7.56 7.56 36.32 2.17
2153 2528 9.627123 ATTATTTCGGTCCTGAATTATGAAAGA 57.373 29.630 0.00 0.00 0.00 2.52
2154 2529 6.737254 TTTCGGTCCTGAATTATGAAAGAC 57.263 37.500 0.00 0.00 0.00 3.01
2155 2530 5.677319 TCGGTCCTGAATTATGAAAGACT 57.323 39.130 0.00 0.00 0.00 3.24
2156 2531 5.419542 TCGGTCCTGAATTATGAAAGACTG 58.580 41.667 0.00 0.00 0.00 3.51
2157 2532 5.186992 TCGGTCCTGAATTATGAAAGACTGA 59.813 40.000 0.00 0.00 36.18 3.41
2158 2533 5.874810 CGGTCCTGAATTATGAAAGACTGAA 59.125 40.000 0.00 0.00 32.15 3.02
2159 2534 6.540189 CGGTCCTGAATTATGAAAGACTGAAT 59.460 38.462 0.00 0.00 32.15 2.57
2160 2535 7.066284 CGGTCCTGAATTATGAAAGACTGAATT 59.934 37.037 0.00 0.00 32.15 2.17
2161 2536 9.396022 GGTCCTGAATTATGAAAGACTGAATTA 57.604 33.333 0.00 0.00 0.00 1.40
2181 2556 9.151471 TGAATTATTAGAAGACTGAAAAGACCG 57.849 33.333 0.00 0.00 0.00 4.79
2182 2557 8.494016 AATTATTAGAAGACTGAAAAGACCGG 57.506 34.615 0.00 0.00 0.00 5.28
2183 2558 5.740290 ATTAGAAGACTGAAAAGACCGGA 57.260 39.130 9.46 0.00 0.00 5.14
2184 2559 3.388345 AGAAGACTGAAAAGACCGGAC 57.612 47.619 9.46 0.10 0.00 4.79
2185 2560 2.037381 AGAAGACTGAAAAGACCGGACC 59.963 50.000 9.46 0.00 0.00 4.46
2186 2561 0.317479 AGACTGAAAAGACCGGACCG 59.683 55.000 9.46 6.99 0.00 4.79
2187 2562 0.316204 GACTGAAAAGACCGGACCGA 59.684 55.000 17.49 0.00 0.00 4.69
2188 2563 0.754472 ACTGAAAAGACCGGACCGAA 59.246 50.000 17.49 0.00 0.00 4.30
2189 2564 1.145803 CTGAAAAGACCGGACCGAAC 58.854 55.000 17.49 8.83 0.00 3.95
2190 2565 0.464870 TGAAAAGACCGGACCGAACA 59.535 50.000 17.49 0.00 0.00 3.18
2191 2566 1.145803 GAAAAGACCGGACCGAACAG 58.854 55.000 17.49 0.00 0.00 3.16
2192 2567 0.754472 AAAAGACCGGACCGAACAGA 59.246 50.000 17.49 0.00 0.00 3.41
2193 2568 0.033090 AAAGACCGGACCGAACAGAC 59.967 55.000 17.49 0.00 0.00 3.51
2194 2569 1.813728 AAGACCGGACCGAACAGACC 61.814 60.000 17.49 0.00 0.00 3.85
2195 2570 3.621892 GACCGGACCGAACAGACCG 62.622 68.421 17.49 0.00 44.16 4.79
2196 2571 3.367743 CCGGACCGAACAGACCGA 61.368 66.667 17.49 0.00 46.94 4.69
2197 2572 2.646719 CGGACCGAACAGACCGAA 59.353 61.111 8.64 0.00 46.94 4.30
2198 2573 1.007038 CGGACCGAACAGACCGAAA 60.007 57.895 8.64 0.00 46.94 3.46
2199 2574 0.598158 CGGACCGAACAGACCGAAAA 60.598 55.000 8.64 0.00 46.94 2.29
2200 2575 1.145803 GGACCGAACAGACCGAAAAG 58.854 55.000 0.00 0.00 0.00 2.27
2201 2576 1.269936 GGACCGAACAGACCGAAAAGA 60.270 52.381 0.00 0.00 0.00 2.52
2202 2577 1.791204 GACCGAACAGACCGAAAAGAC 59.209 52.381 0.00 0.00 0.00 3.01
2203 2578 1.145803 CCGAACAGACCGAAAAGACC 58.854 55.000 0.00 0.00 0.00 3.85
2204 2579 0.782384 CGAACAGACCGAAAAGACCG 59.218 55.000 0.00 0.00 0.00 4.79
2205 2580 1.601162 CGAACAGACCGAAAAGACCGA 60.601 52.381 0.00 0.00 0.00 4.69
2206 2581 2.476821 GAACAGACCGAAAAGACCGAA 58.523 47.619 0.00 0.00 0.00 4.30
2207 2582 1.861971 ACAGACCGAAAAGACCGAAC 58.138 50.000 0.00 0.00 0.00 3.95
2208 2583 0.782384 CAGACCGAAAAGACCGAACG 59.218 55.000 0.00 0.00 0.00 3.95
2209 2584 0.942884 AGACCGAAAAGACCGAACGC 60.943 55.000 0.00 0.00 0.00 4.84
2210 2585 1.894223 GACCGAAAAGACCGAACGCC 61.894 60.000 0.00 0.00 0.00 5.68
2211 2586 2.674084 CCGAAAAGACCGAACGCCC 61.674 63.158 0.00 0.00 0.00 6.13
2212 2587 2.858158 GAAAAGACCGAACGCCCG 59.142 61.111 0.00 0.00 0.00 6.13
2304 2679 7.448420 TCCAATTGAAATGGCTGATAAACAAA 58.552 30.769 7.12 0.00 37.88 2.83
2355 2730 5.894298 AGATAGACAGGTGCAATGGATAA 57.106 39.130 5.27 0.00 0.00 1.75
2435 2810 9.277783 AGAATAGCAGGACATAATTTCACATAC 57.722 33.333 0.00 0.00 0.00 2.39
2455 2830 8.623903 CACATACATGATGGCTAATTAAACAGT 58.376 33.333 0.00 0.00 40.18 3.55
2730 3277 8.664669 ATTATGTCTTTAGAAAATGGGTTGGT 57.335 30.769 0.00 0.00 0.00 3.67
2731 3278 5.782893 TGTCTTTAGAAAATGGGTTGGTG 57.217 39.130 0.00 0.00 0.00 4.17
2732 3279 5.205056 TGTCTTTAGAAAATGGGTTGGTGT 58.795 37.500 0.00 0.00 0.00 4.16
2733 3280 5.300792 TGTCTTTAGAAAATGGGTTGGTGTC 59.699 40.000 0.00 0.00 0.00 3.67
2734 3281 5.300792 GTCTTTAGAAAATGGGTTGGTGTCA 59.699 40.000 0.00 0.00 0.00 3.58
2735 3282 5.300792 TCTTTAGAAAATGGGTTGGTGTCAC 59.699 40.000 0.00 0.00 0.00 3.67
2736 3283 1.953686 AGAAAATGGGTTGGTGTCACG 59.046 47.619 0.00 0.00 0.00 4.35
2737 3284 0.387565 AAAATGGGTTGGTGTCACGC 59.612 50.000 0.00 0.00 0.00 5.34
2738 3285 1.460273 AAATGGGTTGGTGTCACGCC 61.460 55.000 0.00 0.00 34.12 5.68
2739 3286 3.860930 ATGGGTTGGTGTCACGCCC 62.861 63.158 17.20 17.20 38.25 6.13
2740 3287 4.572571 GGGTTGGTGTCACGCCCA 62.573 66.667 18.45 0.00 37.90 5.36
2741 3288 2.517402 GGTTGGTGTCACGCCCAA 60.517 61.111 4.51 0.00 38.38 4.12
2742 3289 1.901464 GGTTGGTGTCACGCCCAAT 60.901 57.895 4.51 0.00 42.38 3.16
2743 3290 0.606944 GGTTGGTGTCACGCCCAATA 60.607 55.000 4.51 0.00 42.38 1.90
2744 3291 1.459450 GTTGGTGTCACGCCCAATAT 58.541 50.000 4.51 0.00 42.38 1.28
2745 3292 1.132262 GTTGGTGTCACGCCCAATATG 59.868 52.381 4.51 0.00 42.38 1.78
2746 3293 1.029408 TGGTGTCACGCCCAATATGC 61.029 55.000 4.51 0.00 32.22 3.14
2757 3304 4.408182 GCCCAATATGCGATACTATCCT 57.592 45.455 0.00 0.00 0.00 3.24
2758 3305 5.531122 GCCCAATATGCGATACTATCCTA 57.469 43.478 0.00 0.00 0.00 2.94
2759 3306 5.914033 GCCCAATATGCGATACTATCCTAA 58.086 41.667 0.00 0.00 0.00 2.69
2760 3307 6.346096 GCCCAATATGCGATACTATCCTAAA 58.654 40.000 0.00 0.00 0.00 1.85
2761 3308 6.480320 GCCCAATATGCGATACTATCCTAAAG 59.520 42.308 0.00 0.00 0.00 1.85
2762 3309 7.632898 GCCCAATATGCGATACTATCCTAAAGA 60.633 40.741 0.00 0.00 0.00 2.52
2763 3310 7.923344 CCCAATATGCGATACTATCCTAAAGAG 59.077 40.741 0.00 0.00 0.00 2.85
2764 3311 8.687242 CCAATATGCGATACTATCCTAAAGAGA 58.313 37.037 0.00 0.00 0.00 3.10
2765 3312 9.509855 CAATATGCGATACTATCCTAAAGAGAC 57.490 37.037 0.00 0.00 0.00 3.36
2766 3313 9.469097 AATATGCGATACTATCCTAAAGAGACT 57.531 33.333 0.00 0.00 0.00 3.24
2767 3314 6.804770 TGCGATACTATCCTAAAGAGACTC 57.195 41.667 0.00 0.00 0.00 3.36
2768 3315 5.408909 TGCGATACTATCCTAAAGAGACTCG 59.591 44.000 0.00 0.00 0.00 4.18
2769 3316 5.638657 GCGATACTATCCTAAAGAGACTCGA 59.361 44.000 0.00 0.00 0.00 4.04
2770 3317 6.147492 GCGATACTATCCTAAAGAGACTCGAA 59.853 42.308 0.00 0.00 0.00 3.71
2771 3318 7.622672 GCGATACTATCCTAAAGAGACTCGAAG 60.623 44.444 0.00 0.00 0.00 3.79
2772 3319 7.148540 CGATACTATCCTAAAGAGACTCGAAGG 60.149 44.444 12.22 12.22 0.00 3.46
2773 3320 5.757988 ACTATCCTAAAGAGACTCGAAGGT 58.242 41.667 15.93 9.26 0.00 3.50
2774 3321 5.824097 ACTATCCTAAAGAGACTCGAAGGTC 59.176 44.000 15.93 0.00 36.56 3.85
2775 3322 3.354467 TCCTAAAGAGACTCGAAGGTCC 58.646 50.000 15.93 0.00 36.95 4.46
2776 3323 2.427812 CCTAAAGAGACTCGAAGGTCCC 59.572 54.545 10.86 0.00 36.95 4.46
2777 3324 2.011122 AAAGAGACTCGAAGGTCCCA 57.989 50.000 1.46 0.00 36.95 4.37
2778 3325 1.258676 AAGAGACTCGAAGGTCCCAC 58.741 55.000 1.46 0.00 36.95 4.61
2779 3326 0.612453 AGAGACTCGAAGGTCCCACC 60.612 60.000 1.46 0.00 38.99 4.61
2780 3327 0.898789 GAGACTCGAAGGTCCCACCA 60.899 60.000 1.46 0.00 41.95 4.17
2781 3328 0.471211 AGACTCGAAGGTCCCACCAA 60.471 55.000 1.46 0.00 41.95 3.67
2782 3329 0.037232 GACTCGAAGGTCCCACCAAG 60.037 60.000 0.00 0.00 41.95 3.61
2783 3330 1.296715 CTCGAAGGTCCCACCAAGG 59.703 63.158 0.00 0.00 41.95 3.61
2784 3331 1.152204 TCGAAGGTCCCACCAAGGA 60.152 57.895 0.00 0.00 41.95 3.36
2785 3332 0.546747 TCGAAGGTCCCACCAAGGAT 60.547 55.000 0.00 0.00 41.95 3.24
2786 3333 1.200519 CGAAGGTCCCACCAAGGATA 58.799 55.000 0.00 0.00 41.95 2.59
2787 3334 1.139058 CGAAGGTCCCACCAAGGATAG 59.861 57.143 0.00 0.00 41.95 2.08
2788 3335 2.478292 GAAGGTCCCACCAAGGATAGA 58.522 52.381 0.00 0.00 41.95 1.98
2789 3336 2.661176 AGGTCCCACCAAGGATAGAA 57.339 50.000 0.00 0.00 41.95 2.10
2790 3337 2.197465 AGGTCCCACCAAGGATAGAAC 58.803 52.381 0.00 0.00 41.95 3.01
2791 3338 1.212195 GGTCCCACCAAGGATAGAACC 59.788 57.143 0.00 0.00 41.22 3.62
2792 3339 1.134491 GTCCCACCAAGGATAGAACCG 60.134 57.143 0.00 0.00 41.22 4.44
2793 3340 0.463833 CCCACCAAGGATAGAACCGC 60.464 60.000 0.00 0.00 41.22 5.68
2794 3341 0.251916 CCACCAAGGATAGAACCGCA 59.748 55.000 0.00 0.00 41.22 5.69
2795 3342 1.134098 CCACCAAGGATAGAACCGCAT 60.134 52.381 0.00 0.00 41.22 4.73
2796 3343 2.104111 CCACCAAGGATAGAACCGCATA 59.896 50.000 0.00 0.00 41.22 3.14
2797 3344 3.244561 CCACCAAGGATAGAACCGCATAT 60.245 47.826 0.00 0.00 41.22 1.78
2798 3345 3.997021 CACCAAGGATAGAACCGCATATC 59.003 47.826 0.00 0.00 34.73 1.63
2799 3346 3.254060 CCAAGGATAGAACCGCATATCG 58.746 50.000 0.00 0.00 38.08 2.92
2800 3347 3.056821 CCAAGGATAGAACCGCATATCGA 60.057 47.826 0.00 0.00 41.67 3.59
2801 3348 4.556233 CAAGGATAGAACCGCATATCGAA 58.444 43.478 0.00 0.00 41.67 3.71
2802 3349 4.866508 AGGATAGAACCGCATATCGAAA 57.133 40.909 0.00 0.00 41.67 3.46
2803 3350 4.557205 AGGATAGAACCGCATATCGAAAC 58.443 43.478 0.00 0.00 41.67 2.78
2804 3351 3.364023 GGATAGAACCGCATATCGAAACG 59.636 47.826 0.00 0.00 41.67 3.60
2805 3352 0.928229 AGAACCGCATATCGAAACGC 59.072 50.000 0.00 0.00 41.67 4.84
2806 3353 0.928229 GAACCGCATATCGAAACGCT 59.072 50.000 0.00 0.00 41.67 5.07
2807 3354 1.326548 GAACCGCATATCGAAACGCTT 59.673 47.619 0.00 0.00 41.67 4.68
2808 3355 1.365699 ACCGCATATCGAAACGCTTT 58.634 45.000 0.00 0.00 41.67 3.51
2809 3356 1.735571 ACCGCATATCGAAACGCTTTT 59.264 42.857 0.00 0.00 41.67 2.27
2810 3357 2.101125 CCGCATATCGAAACGCTTTTG 58.899 47.619 0.00 0.00 41.67 2.44
2811 3358 1.508725 CGCATATCGAAACGCTTTTGC 59.491 47.619 0.00 0.00 41.67 3.68
2812 3359 3.036121 CGCATATCGAAACGCTTTTGCA 61.036 45.455 0.00 0.00 43.14 4.08
2813 3360 4.501671 CGCATATCGAAACGCTTTTGCAA 61.502 43.478 0.00 0.00 43.14 4.08
2814 3361 6.255786 CGCATATCGAAACGCTTTTGCAAG 62.256 45.833 0.00 0.00 43.14 4.01
2825 3372 4.660789 GCTTTTGCAAGGTGGATATCAT 57.339 40.909 4.83 0.00 46.58 2.45
2826 3373 5.014808 GCTTTTGCAAGGTGGATATCATT 57.985 39.130 4.83 0.00 46.58 2.57
2827 3374 6.147864 GCTTTTGCAAGGTGGATATCATTA 57.852 37.500 4.83 0.00 46.58 1.90
2828 3375 5.979517 GCTTTTGCAAGGTGGATATCATTAC 59.020 40.000 4.83 0.54 46.58 1.89
2829 3376 6.405731 GCTTTTGCAAGGTGGATATCATTACA 60.406 38.462 4.83 0.00 46.58 2.41
2830 3377 7.658525 TTTTGCAAGGTGGATATCATTACAT 57.341 32.000 4.83 0.00 0.00 2.29
2831 3378 6.882610 TTGCAAGGTGGATATCATTACATC 57.117 37.500 4.83 0.00 0.00 3.06
2832 3379 5.939447 TGCAAGGTGGATATCATTACATCA 58.061 37.500 4.83 0.00 0.00 3.07
2833 3380 6.363882 TGCAAGGTGGATATCATTACATCAA 58.636 36.000 4.83 0.00 0.00 2.57
2834 3381 6.262944 TGCAAGGTGGATATCATTACATCAAC 59.737 38.462 4.83 0.00 0.00 3.18
2835 3382 6.262944 GCAAGGTGGATATCATTACATCAACA 59.737 38.462 4.83 0.00 28.19 3.33
2836 3383 7.040201 GCAAGGTGGATATCATTACATCAACAT 60.040 37.037 4.83 0.00 28.19 2.71
2837 3384 8.853126 CAAGGTGGATATCATTACATCAACATT 58.147 33.333 4.83 0.00 31.10 2.71
2839 3386 9.507329 AGGTGGATATCATTACATCAACATTAC 57.493 33.333 4.83 0.00 28.19 1.89
2840 3387 9.283768 GGTGGATATCATTACATCAACATTACA 57.716 33.333 4.83 0.00 28.19 2.41
2852 3399 8.868522 ACATCAACATTACATAATAGATGGGG 57.131 34.615 16.78 4.78 35.39 4.96
2853 3400 8.668653 ACATCAACATTACATAATAGATGGGGA 58.331 33.333 16.78 0.00 35.39 4.81
2854 3401 9.690913 CATCAACATTACATAATAGATGGGGAT 57.309 33.333 0.00 0.00 31.82 3.85
2857 3404 9.958180 CAACATTACATAATAGATGGGGATACA 57.042 33.333 0.00 0.00 39.74 2.29
2867 3414 4.729868 AGATGGGGATACATACAAAAGGC 58.270 43.478 0.00 0.00 39.74 4.35
2868 3415 4.167892 AGATGGGGATACATACAAAAGGCA 59.832 41.667 0.00 0.00 39.74 4.75
2869 3416 4.534647 TGGGGATACATACAAAAGGCAT 57.465 40.909 0.00 0.00 39.74 4.40
2870 3417 5.654901 TGGGGATACATACAAAAGGCATA 57.345 39.130 0.00 0.00 39.74 3.14
2871 3418 5.381757 TGGGGATACATACAAAAGGCATAC 58.618 41.667 0.00 0.00 39.74 2.39
2872 3419 5.103898 TGGGGATACATACAAAAGGCATACA 60.104 40.000 0.00 0.00 39.74 2.29
2873 3420 5.830991 GGGGATACATACAAAAGGCATACAA 59.169 40.000 0.00 0.00 39.74 2.41
2874 3421 6.493458 GGGGATACATACAAAAGGCATACAAT 59.507 38.462 0.00 0.00 39.74 2.71
2875 3422 7.370383 GGGATACATACAAAAGGCATACAATG 58.630 38.462 0.00 0.00 39.74 2.82
2888 3435 4.873768 CATACAATGCCACACGAATACA 57.126 40.909 0.00 0.00 0.00 2.29
2889 3436 5.422666 CATACAATGCCACACGAATACAT 57.577 39.130 0.00 0.00 0.00 2.29
2890 3437 5.443261 CATACAATGCCACACGAATACATC 58.557 41.667 0.00 0.00 0.00 3.06
2891 3438 3.342719 ACAATGCCACACGAATACATCA 58.657 40.909 0.00 0.00 0.00 3.07
2892 3439 3.755905 ACAATGCCACACGAATACATCAA 59.244 39.130 0.00 0.00 0.00 2.57
2893 3440 4.398988 ACAATGCCACACGAATACATCAAT 59.601 37.500 0.00 0.00 0.00 2.57
2894 3441 5.588246 ACAATGCCACACGAATACATCAATA 59.412 36.000 0.00 0.00 0.00 1.90
2895 3442 6.262944 ACAATGCCACACGAATACATCAATAT 59.737 34.615 0.00 0.00 0.00 1.28
2896 3443 7.443879 ACAATGCCACACGAATACATCAATATA 59.556 33.333 0.00 0.00 0.00 0.86
2897 3444 8.453320 CAATGCCACACGAATACATCAATATAT 58.547 33.333 0.00 0.00 0.00 0.86
2898 3445 7.595311 TGCCACACGAATACATCAATATATC 57.405 36.000 0.00 0.00 0.00 1.63
2899 3446 7.158021 TGCCACACGAATACATCAATATATCA 58.842 34.615 0.00 0.00 0.00 2.15
2900 3447 7.823799 TGCCACACGAATACATCAATATATCAT 59.176 33.333 0.00 0.00 0.00 2.45
2901 3448 9.313118 GCCACACGAATACATCAATATATCATA 57.687 33.333 0.00 0.00 0.00 2.15
2920 3467 9.809096 ATATCATACATAAGATCAACATCCGAC 57.191 33.333 0.00 0.00 0.00 4.79
2921 3468 7.290110 TCATACATAAGATCAACATCCGACT 57.710 36.000 0.00 0.00 0.00 4.18
2922 3469 8.404107 TCATACATAAGATCAACATCCGACTA 57.596 34.615 0.00 0.00 0.00 2.59
2923 3470 8.297426 TCATACATAAGATCAACATCCGACTAC 58.703 37.037 0.00 0.00 0.00 2.73
2924 3471 5.520632 ACATAAGATCAACATCCGACTACG 58.479 41.667 0.00 0.00 39.43 3.51
2938 3485 4.048820 CGACTACGGATGAAACACAAAC 57.951 45.455 0.00 0.00 35.72 2.93
2939 3486 3.491639 CGACTACGGATGAAACACAAACA 59.508 43.478 0.00 0.00 35.72 2.83
2940 3487 4.376008 CGACTACGGATGAAACACAAACAG 60.376 45.833 0.00 0.00 35.72 3.16
2942 3489 5.120399 ACTACGGATGAAACACAAACAGAA 58.880 37.500 0.00 0.00 0.00 3.02
2943 3490 4.974368 ACGGATGAAACACAAACAGAAA 57.026 36.364 0.00 0.00 0.00 2.52
2944 3491 4.668289 ACGGATGAAACACAAACAGAAAC 58.332 39.130 0.00 0.00 0.00 2.78
2945 3492 4.398044 ACGGATGAAACACAAACAGAAACT 59.602 37.500 0.00 0.00 0.00 2.66
2946 3493 4.970003 CGGATGAAACACAAACAGAAACTC 59.030 41.667 0.00 0.00 0.00 3.01
2948 3495 6.329496 GGATGAAACACAAACAGAAACTCAA 58.671 36.000 0.00 0.00 0.00 3.02
2951 3498 5.627367 TGAAACACAAACAGAAACTCAAACG 59.373 36.000 0.00 0.00 0.00 3.60
2953 3500 4.719040 ACACAAACAGAAACTCAAACGAC 58.281 39.130 0.00 0.00 0.00 4.34
2955 3502 5.106317 ACACAAACAGAAACTCAAACGACAT 60.106 36.000 0.00 0.00 0.00 3.06
2956 3503 5.452302 CACAAACAGAAACTCAAACGACATC 59.548 40.000 0.00 0.00 0.00 3.06
2957 3504 4.813296 AACAGAAACTCAAACGACATCC 57.187 40.909 0.00 0.00 0.00 3.51
2961 3508 1.892209 AACTCAAACGACATCCACCC 58.108 50.000 0.00 0.00 0.00 4.61
2962 3509 1.056660 ACTCAAACGACATCCACCCT 58.943 50.000 0.00 0.00 0.00 4.34
2963 3510 1.270839 ACTCAAACGACATCCACCCTG 60.271 52.381 0.00 0.00 0.00 4.45
2988 3556 2.116125 AGGCTGCCAACCTGGAAC 59.884 61.111 22.65 0.00 40.96 3.62
2989 3557 2.991540 GGCTGCCAACCTGGAACC 60.992 66.667 15.17 0.00 40.96 3.62
2990 3558 2.116125 GCTGCCAACCTGGAACCT 59.884 61.111 0.00 0.00 40.96 3.50
2991 3559 1.378762 GCTGCCAACCTGGAACCTA 59.621 57.895 0.00 0.00 40.96 3.08
2992 3560 0.034089 GCTGCCAACCTGGAACCTAT 60.034 55.000 0.00 0.00 40.96 2.57
2993 3561 2.019156 GCTGCCAACCTGGAACCTATC 61.019 57.143 0.00 0.00 40.96 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 0.988145 CCCCAACCCCAGCAGATAGA 60.988 60.000 0.00 0.00 0.00 1.98
137 138 1.281925 ACCCCAACCCCAGCAGATAG 61.282 60.000 0.00 0.00 0.00 2.08
138 139 0.849094 AACCCCAACCCCAGCAGATA 60.849 55.000 0.00 0.00 0.00 1.98
139 140 0.849094 TAACCCCAACCCCAGCAGAT 60.849 55.000 0.00 0.00 0.00 2.90
140 141 1.464395 TAACCCCAACCCCAGCAGA 60.464 57.895 0.00 0.00 0.00 4.26
141 142 1.000896 CTAACCCCAACCCCAGCAG 60.001 63.158 0.00 0.00 0.00 4.24
142 143 1.068943 TTCTAACCCCAACCCCAGCA 61.069 55.000 0.00 0.00 0.00 4.41
143 144 0.323451 CTTCTAACCCCAACCCCAGC 60.323 60.000 0.00 0.00 0.00 4.85
144 145 0.331616 CCTTCTAACCCCAACCCCAG 59.668 60.000 0.00 0.00 0.00 4.45
145 146 1.143970 CCCTTCTAACCCCAACCCCA 61.144 60.000 0.00 0.00 0.00 4.96
146 147 1.695465 CCCTTCTAACCCCAACCCC 59.305 63.158 0.00 0.00 0.00 4.95
147 148 1.144612 ACCCCTTCTAACCCCAACCC 61.145 60.000 0.00 0.00 0.00 4.11
148 149 0.039180 CACCCCTTCTAACCCCAACC 59.961 60.000 0.00 0.00 0.00 3.77
149 150 0.775542 ACACCCCTTCTAACCCCAAC 59.224 55.000 0.00 0.00 0.00 3.77
150 151 2.271777 CTACACCCCTTCTAACCCCAA 58.728 52.381 0.00 0.00 0.00 4.12
151 152 1.961133 CTACACCCCTTCTAACCCCA 58.039 55.000 0.00 0.00 0.00 4.96
152 153 0.545171 GCTACACCCCTTCTAACCCC 59.455 60.000 0.00 0.00 0.00 4.95
153 154 1.209747 CAGCTACACCCCTTCTAACCC 59.790 57.143 0.00 0.00 0.00 4.11
154 155 1.209747 CCAGCTACACCCCTTCTAACC 59.790 57.143 0.00 0.00 0.00 2.85
155 156 1.907255 ACCAGCTACACCCCTTCTAAC 59.093 52.381 0.00 0.00 0.00 2.34
156 157 2.337359 ACCAGCTACACCCCTTCTAA 57.663 50.000 0.00 0.00 0.00 2.10
157 158 2.185387 GAACCAGCTACACCCCTTCTA 58.815 52.381 0.00 0.00 0.00 2.10
158 159 0.984995 GAACCAGCTACACCCCTTCT 59.015 55.000 0.00 0.00 0.00 2.85
159 160 0.984995 AGAACCAGCTACACCCCTTC 59.015 55.000 0.00 0.00 0.00 3.46
160 161 0.984995 GAGAACCAGCTACACCCCTT 59.015 55.000 0.00 0.00 0.00 3.95
161 162 0.117340 AGAGAACCAGCTACACCCCT 59.883 55.000 0.00 0.00 0.00 4.79
162 163 0.250513 CAGAGAACCAGCTACACCCC 59.749 60.000 0.00 0.00 0.00 4.95
163 164 0.977395 ACAGAGAACCAGCTACACCC 59.023 55.000 0.00 0.00 0.00 4.61
164 165 1.066787 GGACAGAGAACCAGCTACACC 60.067 57.143 0.00 0.00 0.00 4.16
165 166 1.618837 TGGACAGAGAACCAGCTACAC 59.381 52.381 0.00 0.00 0.00 2.90
166 167 2.009681 TGGACAGAGAACCAGCTACA 57.990 50.000 0.00 0.00 0.00 2.74
167 168 2.300437 AGTTGGACAGAGAACCAGCTAC 59.700 50.000 0.00 0.00 43.74 3.58
168 169 2.300152 CAGTTGGACAGAGAACCAGCTA 59.700 50.000 0.00 0.00 43.74 3.32
169 170 1.071385 CAGTTGGACAGAGAACCAGCT 59.929 52.381 0.00 0.00 45.78 4.24
170 171 1.517242 CAGTTGGACAGAGAACCAGC 58.483 55.000 0.00 0.00 37.48 4.85
171 172 1.271054 CCCAGTTGGACAGAGAACCAG 60.271 57.143 0.00 0.00 37.48 4.00
172 173 0.764890 CCCAGTTGGACAGAGAACCA 59.235 55.000 0.00 0.00 37.39 3.67
173 174 0.765510 ACCCAGTTGGACAGAGAACC 59.234 55.000 0.00 0.00 37.39 3.62
174 175 2.897969 TCTACCCAGTTGGACAGAGAAC 59.102 50.000 0.00 0.00 37.39 3.01
175 176 3.165875 CTCTACCCAGTTGGACAGAGAA 58.834 50.000 17.35 0.00 43.60 2.87
176 177 2.557676 CCTCTACCCAGTTGGACAGAGA 60.558 54.545 21.15 9.38 43.60 3.10
177 178 1.827969 CCTCTACCCAGTTGGACAGAG 59.172 57.143 16.15 16.15 42.05 3.35
178 179 1.149288 ACCTCTACCCAGTTGGACAGA 59.851 52.381 0.00 1.14 37.39 3.41
179 180 1.645710 ACCTCTACCCAGTTGGACAG 58.354 55.000 0.00 0.00 37.39 3.51
180 181 2.158279 TGTACCTCTACCCAGTTGGACA 60.158 50.000 0.00 0.00 37.39 4.02
181 182 2.532843 TGTACCTCTACCCAGTTGGAC 58.467 52.381 0.00 0.00 37.39 4.02
182 183 3.263369 TTGTACCTCTACCCAGTTGGA 57.737 47.619 0.00 0.00 37.39 3.53
183 184 3.775316 AGATTGTACCTCTACCCAGTTGG 59.225 47.826 0.00 0.00 41.37 3.77
184 185 4.759782 CAGATTGTACCTCTACCCAGTTG 58.240 47.826 0.00 0.00 0.00 3.16
185 186 3.197983 GCAGATTGTACCTCTACCCAGTT 59.802 47.826 0.00 0.00 0.00 3.16
186 187 2.766828 GCAGATTGTACCTCTACCCAGT 59.233 50.000 0.00 0.00 0.00 4.00
187 188 2.766263 TGCAGATTGTACCTCTACCCAG 59.234 50.000 0.00 0.00 0.00 4.45
188 189 2.827755 TGCAGATTGTACCTCTACCCA 58.172 47.619 0.00 0.00 0.00 4.51
189 190 3.388024 TCATGCAGATTGTACCTCTACCC 59.612 47.826 0.00 0.00 0.00 3.69
190 191 4.100189 ACTCATGCAGATTGTACCTCTACC 59.900 45.833 0.00 0.00 0.00 3.18
191 192 5.046529 CACTCATGCAGATTGTACCTCTAC 58.953 45.833 0.00 0.00 0.00 2.59
192 193 4.711846 ACACTCATGCAGATTGTACCTCTA 59.288 41.667 7.16 0.00 38.24 2.43
193 194 3.517100 ACACTCATGCAGATTGTACCTCT 59.483 43.478 7.16 0.00 38.24 3.69
194 195 3.620374 CACACTCATGCAGATTGTACCTC 59.380 47.826 8.19 0.00 37.98 3.85
195 196 3.603532 CACACTCATGCAGATTGTACCT 58.396 45.455 8.19 0.00 37.98 3.08
196 197 2.679837 CCACACTCATGCAGATTGTACC 59.320 50.000 8.19 0.00 37.98 3.34
197 198 2.679837 CCCACACTCATGCAGATTGTAC 59.320 50.000 8.19 0.00 37.98 2.90
198 199 2.305635 ACCCACACTCATGCAGATTGTA 59.694 45.455 8.19 0.00 37.98 2.41
199 200 1.074405 ACCCACACTCATGCAGATTGT 59.926 47.619 0.00 0.00 40.37 2.71
200 201 1.830279 ACCCACACTCATGCAGATTG 58.170 50.000 0.00 0.00 33.45 2.67
201 202 2.592102 AACCCACACTCATGCAGATT 57.408 45.000 0.00 0.00 0.00 2.40
202 203 3.054139 ACATAACCCACACTCATGCAGAT 60.054 43.478 0.00 0.00 0.00 2.90
203 204 2.305635 ACATAACCCACACTCATGCAGA 59.694 45.455 0.00 0.00 0.00 4.26
204 205 2.421073 CACATAACCCACACTCATGCAG 59.579 50.000 0.00 0.00 0.00 4.41
205 206 2.224744 ACACATAACCCACACTCATGCA 60.225 45.455 0.00 0.00 0.00 3.96
206 207 2.162208 CACACATAACCCACACTCATGC 59.838 50.000 0.00 0.00 0.00 4.06
207 208 2.749076 CCACACATAACCCACACTCATG 59.251 50.000 0.00 0.00 0.00 3.07
208 209 2.375174 ACCACACATAACCCACACTCAT 59.625 45.455 0.00 0.00 0.00 2.90
209 210 1.771854 ACCACACATAACCCACACTCA 59.228 47.619 0.00 0.00 0.00 3.41
210 211 2.151202 CACCACACATAACCCACACTC 58.849 52.381 0.00 0.00 0.00 3.51
211 212 1.202879 CCACCACACATAACCCACACT 60.203 52.381 0.00 0.00 0.00 3.55
212 213 1.243902 CCACCACACATAACCCACAC 58.756 55.000 0.00 0.00 0.00 3.82
213 214 0.111446 CCCACCACACATAACCCACA 59.889 55.000 0.00 0.00 0.00 4.17
214 215 0.610785 CCCCACCACACATAACCCAC 60.611 60.000 0.00 0.00 0.00 4.61
215 216 1.770985 CCCCACCACACATAACCCA 59.229 57.895 0.00 0.00 0.00 4.51
216 217 1.680989 GCCCCACCACACATAACCC 60.681 63.158 0.00 0.00 0.00 4.11
217 218 0.965363 CAGCCCCACCACACATAACC 60.965 60.000 0.00 0.00 0.00 2.85
218 219 0.037590 TCAGCCCCACCACACATAAC 59.962 55.000 0.00 0.00 0.00 1.89
219 220 0.998928 ATCAGCCCCACCACACATAA 59.001 50.000 0.00 0.00 0.00 1.90
220 221 0.998928 AATCAGCCCCACCACACATA 59.001 50.000 0.00 0.00 0.00 2.29
221 222 0.323725 GAATCAGCCCCACCACACAT 60.324 55.000 0.00 0.00 0.00 3.21
222 223 1.074775 GAATCAGCCCCACCACACA 59.925 57.895 0.00 0.00 0.00 3.72
223 224 0.251341 AAGAATCAGCCCCACCACAC 60.251 55.000 0.00 0.00 0.00 3.82
224 225 0.251297 CAAGAATCAGCCCCACCACA 60.251 55.000 0.00 0.00 0.00 4.17
225 226 0.967380 CCAAGAATCAGCCCCACCAC 60.967 60.000 0.00 0.00 0.00 4.16
226 227 1.383799 CCAAGAATCAGCCCCACCA 59.616 57.895 0.00 0.00 0.00 4.17
227 228 1.380380 CCCAAGAATCAGCCCCACC 60.380 63.158 0.00 0.00 0.00 4.61
228 229 2.054453 GCCCAAGAATCAGCCCCAC 61.054 63.158 0.00 0.00 0.00 4.61
229 230 2.091640 TTGCCCAAGAATCAGCCCCA 62.092 55.000 0.00 0.00 0.00 4.96
230 231 1.305213 TTGCCCAAGAATCAGCCCC 60.305 57.895 0.00 0.00 0.00 5.80
231 232 0.613012 ACTTGCCCAAGAATCAGCCC 60.613 55.000 14.46 0.00 40.79 5.19
232 233 1.745653 GTACTTGCCCAAGAATCAGCC 59.254 52.381 14.46 0.00 40.79 4.85
233 234 2.436417 TGTACTTGCCCAAGAATCAGC 58.564 47.619 14.46 0.00 40.79 4.26
234 235 3.191371 GGTTGTACTTGCCCAAGAATCAG 59.809 47.826 14.46 0.00 40.79 2.90
235 236 3.153919 GGTTGTACTTGCCCAAGAATCA 58.846 45.455 14.46 7.48 40.79 2.57
236 237 2.161609 CGGTTGTACTTGCCCAAGAATC 59.838 50.000 14.46 5.34 40.79 2.52
237 238 2.159382 CGGTTGTACTTGCCCAAGAAT 58.841 47.619 14.46 0.00 40.79 2.40
238 239 1.134037 ACGGTTGTACTTGCCCAAGAA 60.134 47.619 14.46 0.00 40.79 2.52
239 240 0.470766 ACGGTTGTACTTGCCCAAGA 59.529 50.000 14.46 0.00 40.79 3.02
240 241 0.591170 CACGGTTGTACTTGCCCAAG 59.409 55.000 6.48 6.48 43.79 3.61
241 242 0.820074 CCACGGTTGTACTTGCCCAA 60.820 55.000 0.00 0.00 0.00 4.12
242 243 1.228003 CCACGGTTGTACTTGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
243 244 0.820482 AACCACGGTTGTACTTGCCC 60.820 55.000 0.00 0.00 36.91 5.36
244 245 0.589708 GAACCACGGTTGTACTTGCC 59.410 55.000 6.10 0.00 38.60 4.52
245 246 1.589803 AGAACCACGGTTGTACTTGC 58.410 50.000 6.10 0.00 38.60 4.01
246 247 4.625742 CAGATAGAACCACGGTTGTACTTG 59.374 45.833 6.10 5.43 36.83 3.16
247 248 4.817517 CAGATAGAACCACGGTTGTACTT 58.182 43.478 6.10 0.00 36.83 2.24
248 249 3.368116 GCAGATAGAACCACGGTTGTACT 60.368 47.826 6.10 4.63 36.83 2.73
249 250 2.928116 GCAGATAGAACCACGGTTGTAC 59.072 50.000 6.10 2.51 36.83 2.90
250 251 2.563620 TGCAGATAGAACCACGGTTGTA 59.436 45.455 6.10 7.26 38.60 2.41
251 252 1.346395 TGCAGATAGAACCACGGTTGT 59.654 47.619 6.10 4.87 38.60 3.32
252 253 2.093306 TGCAGATAGAACCACGGTTG 57.907 50.000 6.10 0.00 38.60 3.77
253 254 2.738643 CGATGCAGATAGAACCACGGTT 60.739 50.000 0.00 0.00 41.54 4.44
254 255 1.202417 CGATGCAGATAGAACCACGGT 60.202 52.381 0.00 0.00 0.00 4.83
255 256 1.067060 TCGATGCAGATAGAACCACGG 59.933 52.381 0.00 0.00 0.00 4.94
256 257 2.120232 GTCGATGCAGATAGAACCACG 58.880 52.381 0.00 0.00 0.00 4.94
257 258 3.119291 CTGTCGATGCAGATAGAACCAC 58.881 50.000 0.00 0.00 38.70 4.16
258 259 2.101415 CCTGTCGATGCAGATAGAACCA 59.899 50.000 4.68 0.00 38.70 3.67
259 260 2.101582 ACCTGTCGATGCAGATAGAACC 59.898 50.000 4.68 0.00 38.70 3.62
260 261 3.444703 ACCTGTCGATGCAGATAGAAC 57.555 47.619 4.68 0.00 38.70 3.01
261 262 3.004839 GCTACCTGTCGATGCAGATAGAA 59.995 47.826 8.31 0.00 35.14 2.10
262 263 2.554462 GCTACCTGTCGATGCAGATAGA 59.446 50.000 8.31 0.00 35.14 1.98
263 264 2.294512 TGCTACCTGTCGATGCAGATAG 59.705 50.000 4.68 2.70 36.03 2.08
264 265 2.034685 GTGCTACCTGTCGATGCAGATA 59.965 50.000 4.68 0.00 38.70 1.98
265 266 1.114627 TGCTACCTGTCGATGCAGAT 58.885 50.000 4.68 0.00 38.70 2.90
266 267 0.173481 GTGCTACCTGTCGATGCAGA 59.827 55.000 4.68 0.00 38.70 4.26
267 268 0.174389 AGTGCTACCTGTCGATGCAG 59.826 55.000 0.00 0.00 34.15 4.41
268 269 0.173481 GAGTGCTACCTGTCGATGCA 59.827 55.000 0.00 0.00 0.00 3.96
269 270 0.173481 TGAGTGCTACCTGTCGATGC 59.827 55.000 0.00 0.00 0.00 3.91
270 271 1.795525 CGTGAGTGCTACCTGTCGATG 60.796 57.143 0.00 0.00 0.00 3.84
271 272 0.452184 CGTGAGTGCTACCTGTCGAT 59.548 55.000 0.00 0.00 0.00 3.59
272 273 1.873863 CGTGAGTGCTACCTGTCGA 59.126 57.895 0.00 0.00 0.00 4.20
273 274 1.801913 GCGTGAGTGCTACCTGTCG 60.802 63.158 0.00 0.00 0.00 4.35
274 275 0.734253 CAGCGTGAGTGCTACCTGTC 60.734 60.000 0.00 0.00 45.23 3.51
275 276 1.290324 CAGCGTGAGTGCTACCTGT 59.710 57.895 0.00 0.00 45.23 4.00
276 277 1.446792 CCAGCGTGAGTGCTACCTG 60.447 63.158 0.00 0.00 45.23 4.00
277 278 2.650116 CCCAGCGTGAGTGCTACCT 61.650 63.158 0.00 0.00 45.23 3.08
278 279 2.125512 CCCAGCGTGAGTGCTACC 60.126 66.667 0.00 0.00 45.23 3.18
279 280 2.815647 GCCCAGCGTGAGTGCTAC 60.816 66.667 0.00 0.00 45.23 3.58
280 281 1.326951 TATGCCCAGCGTGAGTGCTA 61.327 55.000 0.00 0.00 45.23 3.49
282 283 1.305219 TTTATGCCCAGCGTGAGTGC 61.305 55.000 0.00 0.00 0.00 4.40
290 291 1.816224 TCTTCGGTTTTTATGCCCAGC 59.184 47.619 0.00 0.00 0.00 4.85
462 464 2.851195 CCTCTTGCGTATGGGCTATTT 58.149 47.619 0.00 0.00 0.00 1.40
935 1138 4.329545 GCAACTGACGGGGGCTCA 62.330 66.667 0.00 0.00 0.00 4.26
992 1195 1.450312 GAACCAGTCATCGGGGCAG 60.450 63.158 0.00 0.00 33.26 4.85
1080 1283 3.157087 GTGAAGAAATGAAGGAGGGCAA 58.843 45.455 0.00 0.00 0.00 4.52
1218 1421 4.349342 GGAAGGATAGTGGGTTCTGATGAT 59.651 45.833 0.00 0.00 0.00 2.45
1273 1477 7.831193 GGACATGGATTTAGATGGCTATTATGT 59.169 37.037 0.00 0.00 0.00 2.29
1488 1737 8.677300 CAAATGCAATCAGTACCTACTACAATT 58.323 33.333 0.00 0.00 34.13 2.32
1489 1738 7.829211 ACAAATGCAATCAGTACCTACTACAAT 59.171 33.333 0.00 0.00 34.13 2.71
1490 1739 7.165485 ACAAATGCAATCAGTACCTACTACAA 58.835 34.615 0.00 0.00 34.13 2.41
1673 1939 4.035558 TCAATTGTCTCTGCAACAAGTCAC 59.964 41.667 5.13 0.00 39.78 3.67
1703 1969 1.432023 TTCCCTTCACCTTGTCCCCC 61.432 60.000 0.00 0.00 0.00 5.40
1837 2160 7.253422 ACATTTGACAAAAAGTGAGAAGACAG 58.747 34.615 4.41 0.00 0.00 3.51
2069 2444 5.238650 CGGTCTTTACAATTCAGTCTTTGGT 59.761 40.000 0.00 0.00 0.00 3.67
2072 2447 6.990349 TCTTCGGTCTTTACAATTCAGTCTTT 59.010 34.615 0.00 0.00 0.00 2.52
2073 2448 6.424207 GTCTTCGGTCTTTACAATTCAGTCTT 59.576 38.462 0.00 0.00 0.00 3.01
2074 2449 5.927115 GTCTTCGGTCTTTACAATTCAGTCT 59.073 40.000 0.00 0.00 0.00 3.24
2075 2450 5.120363 GGTCTTCGGTCTTTACAATTCAGTC 59.880 44.000 0.00 0.00 0.00 3.51
2076 2451 4.995487 GGTCTTCGGTCTTTACAATTCAGT 59.005 41.667 0.00 0.00 0.00 3.41
2077 2452 4.091509 CGGTCTTCGGTCTTTACAATTCAG 59.908 45.833 0.00 0.00 34.75 3.02
2078 2453 3.991773 CGGTCTTCGGTCTTTACAATTCA 59.008 43.478 0.00 0.00 34.75 2.57
2079 2454 4.240096 TCGGTCTTCGGTCTTTACAATTC 58.760 43.478 0.00 0.00 39.77 2.17
2080 2455 4.261578 TCGGTCTTCGGTCTTTACAATT 57.738 40.909 0.00 0.00 39.77 2.32
2081 2456 3.947910 TCGGTCTTCGGTCTTTACAAT 57.052 42.857 0.00 0.00 39.77 2.71
2082 2457 3.731652 TTCGGTCTTCGGTCTTTACAA 57.268 42.857 0.00 0.00 39.77 2.41
2083 2458 3.947910 ATTCGGTCTTCGGTCTTTACA 57.052 42.857 0.00 0.00 39.77 2.41
2084 2459 4.991472 ACTATTCGGTCTTCGGTCTTTAC 58.009 43.478 0.00 0.00 39.77 2.01
2085 2460 5.649782 AACTATTCGGTCTTCGGTCTTTA 57.350 39.130 0.00 0.00 39.77 1.85
2086 2461 4.532314 AACTATTCGGTCTTCGGTCTTT 57.468 40.909 0.00 0.00 39.77 2.52
2087 2462 5.416952 TCTTAACTATTCGGTCTTCGGTCTT 59.583 40.000 0.00 0.00 39.77 3.01
2088 2463 4.946157 TCTTAACTATTCGGTCTTCGGTCT 59.054 41.667 0.00 0.00 39.77 3.85
2089 2464 5.240713 TCTTAACTATTCGGTCTTCGGTC 57.759 43.478 0.00 0.00 39.77 4.79
2090 2465 5.405797 GTTCTTAACTATTCGGTCTTCGGT 58.594 41.667 0.00 0.00 39.77 4.69
2091 2466 4.802563 GGTTCTTAACTATTCGGTCTTCGG 59.197 45.833 0.00 0.00 39.77 4.30
2092 2467 4.498323 CGGTTCTTAACTATTCGGTCTTCG 59.502 45.833 0.00 0.00 40.90 3.79
2093 2468 5.644644 TCGGTTCTTAACTATTCGGTCTTC 58.355 41.667 0.00 0.00 0.00 2.87
2094 2469 5.649782 TCGGTTCTTAACTATTCGGTCTT 57.350 39.130 0.00 0.00 0.00 3.01
2095 2470 5.649782 TTCGGTTCTTAACTATTCGGTCT 57.350 39.130 0.00 0.00 0.00 3.85
2096 2471 6.587608 TCTTTTCGGTTCTTAACTATTCGGTC 59.412 38.462 0.00 0.00 0.00 4.79
2097 2472 6.367149 GTCTTTTCGGTTCTTAACTATTCGGT 59.633 38.462 0.00 0.00 0.00 4.69
2098 2473 6.183360 GGTCTTTTCGGTTCTTAACTATTCGG 60.183 42.308 0.00 0.00 0.00 4.30
2099 2474 6.453396 CGGTCTTTTCGGTTCTTAACTATTCG 60.453 42.308 0.00 0.00 0.00 3.34
2100 2475 6.587608 TCGGTCTTTTCGGTTCTTAACTATTC 59.412 38.462 0.00 0.00 0.00 1.75
2101 2476 6.458210 TCGGTCTTTTCGGTTCTTAACTATT 58.542 36.000 0.00 0.00 0.00 1.73
2102 2477 6.029346 TCGGTCTTTTCGGTTCTTAACTAT 57.971 37.500 0.00 0.00 0.00 2.12
2103 2478 5.452078 TCGGTCTTTTCGGTTCTTAACTA 57.548 39.130 0.00 0.00 0.00 2.24
2104 2479 4.326504 TCGGTCTTTTCGGTTCTTAACT 57.673 40.909 0.00 0.00 0.00 2.24
2105 2480 5.408204 TTTCGGTCTTTTCGGTTCTTAAC 57.592 39.130 0.00 0.00 0.00 2.01
2106 2481 6.622833 AATTTCGGTCTTTTCGGTTCTTAA 57.377 33.333 0.00 0.00 0.00 1.85
2107 2482 7.910441 ATAATTTCGGTCTTTTCGGTTCTTA 57.090 32.000 0.00 0.00 0.00 2.10
2108 2483 6.812879 ATAATTTCGGTCTTTTCGGTTCTT 57.187 33.333 0.00 0.00 0.00 2.52
2109 2484 6.812879 AATAATTTCGGTCTTTTCGGTTCT 57.187 33.333 0.00 0.00 0.00 3.01
2110 2485 7.488537 GAAATAATTTCGGTCTTTTCGGTTC 57.511 36.000 0.00 0.00 0.00 3.62
2127 2502 9.627123 TCTTTCATAATTCAGGACCGAAATAAT 57.373 29.630 3.44 0.00 0.00 1.28
2128 2503 8.889717 GTCTTTCATAATTCAGGACCGAAATAA 58.110 33.333 3.44 0.00 0.00 1.40
2129 2504 8.265055 AGTCTTTCATAATTCAGGACCGAAATA 58.735 33.333 3.44 1.04 0.00 1.40
2130 2505 7.066284 CAGTCTTTCATAATTCAGGACCGAAAT 59.934 37.037 3.44 0.00 0.00 2.17
2131 2506 6.371548 CAGTCTTTCATAATTCAGGACCGAAA 59.628 38.462 3.44 0.00 0.00 3.46
2132 2507 5.874810 CAGTCTTTCATAATTCAGGACCGAA 59.125 40.000 2.03 2.03 0.00 4.30
2133 2508 5.186992 TCAGTCTTTCATAATTCAGGACCGA 59.813 40.000 0.00 0.00 0.00 4.69
2134 2509 5.419542 TCAGTCTTTCATAATTCAGGACCG 58.580 41.667 0.00 0.00 0.00 4.79
2135 2510 7.872113 ATTCAGTCTTTCATAATTCAGGACC 57.128 36.000 0.00 0.00 0.00 4.46
2155 2530 9.151471 CGGTCTTTTCAGTCTTCTAATAATTCA 57.849 33.333 0.00 0.00 0.00 2.57
2156 2531 8.604890 CCGGTCTTTTCAGTCTTCTAATAATTC 58.395 37.037 0.00 0.00 0.00 2.17
2157 2532 8.319146 TCCGGTCTTTTCAGTCTTCTAATAATT 58.681 33.333 0.00 0.00 0.00 1.40
2158 2533 7.764901 GTCCGGTCTTTTCAGTCTTCTAATAAT 59.235 37.037 0.00 0.00 0.00 1.28
2159 2534 7.095270 GTCCGGTCTTTTCAGTCTTCTAATAA 58.905 38.462 0.00 0.00 0.00 1.40
2160 2535 6.350780 GGTCCGGTCTTTTCAGTCTTCTAATA 60.351 42.308 0.00 0.00 0.00 0.98
2161 2536 5.480205 GTCCGGTCTTTTCAGTCTTCTAAT 58.520 41.667 0.00 0.00 0.00 1.73
2162 2537 4.262335 GGTCCGGTCTTTTCAGTCTTCTAA 60.262 45.833 0.00 0.00 0.00 2.10
2163 2538 3.257624 GGTCCGGTCTTTTCAGTCTTCTA 59.742 47.826 0.00 0.00 0.00 2.10
2164 2539 2.037381 GGTCCGGTCTTTTCAGTCTTCT 59.963 50.000 0.00 0.00 0.00 2.85
2165 2540 2.414806 GGTCCGGTCTTTTCAGTCTTC 58.585 52.381 0.00 0.00 0.00 2.87
2166 2541 1.270147 CGGTCCGGTCTTTTCAGTCTT 60.270 52.381 2.34 0.00 0.00 3.01
2167 2542 0.317479 CGGTCCGGTCTTTTCAGTCT 59.683 55.000 2.34 0.00 0.00 3.24
2168 2543 0.316204 TCGGTCCGGTCTTTTCAGTC 59.684 55.000 12.29 0.00 0.00 3.51
2169 2544 0.754472 TTCGGTCCGGTCTTTTCAGT 59.246 50.000 12.29 0.00 0.00 3.41
2170 2545 1.145803 GTTCGGTCCGGTCTTTTCAG 58.854 55.000 12.29 0.00 0.00 3.02
2171 2546 0.464870 TGTTCGGTCCGGTCTTTTCA 59.535 50.000 12.29 0.00 0.00 2.69
2172 2547 1.145803 CTGTTCGGTCCGGTCTTTTC 58.854 55.000 12.29 0.00 0.00 2.29
2173 2548 0.754472 TCTGTTCGGTCCGGTCTTTT 59.246 50.000 12.29 0.00 0.00 2.27
2174 2549 0.033090 GTCTGTTCGGTCCGGTCTTT 59.967 55.000 12.29 0.00 0.00 2.52
2175 2550 1.664306 GTCTGTTCGGTCCGGTCTT 59.336 57.895 12.29 0.00 0.00 3.01
2176 2551 2.273912 GGTCTGTTCGGTCCGGTCT 61.274 63.158 12.29 0.00 0.00 3.85
2177 2552 2.260743 GGTCTGTTCGGTCCGGTC 59.739 66.667 12.29 5.58 0.00 4.79
2178 2553 3.677648 CGGTCTGTTCGGTCCGGT 61.678 66.667 12.29 0.00 39.41 5.28
2179 2554 2.424705 TTTCGGTCTGTTCGGTCCGG 62.425 60.000 12.29 0.00 42.71 5.14
2180 2555 0.598158 TTTTCGGTCTGTTCGGTCCG 60.598 55.000 4.39 4.39 43.65 4.79
2181 2556 1.145803 CTTTTCGGTCTGTTCGGTCC 58.854 55.000 0.00 0.00 0.00 4.46
2182 2557 1.791204 GTCTTTTCGGTCTGTTCGGTC 59.209 52.381 0.00 0.00 0.00 4.79
2183 2558 1.539712 GGTCTTTTCGGTCTGTTCGGT 60.540 52.381 0.00 0.00 0.00 4.69
2184 2559 1.145803 GGTCTTTTCGGTCTGTTCGG 58.854 55.000 0.00 0.00 0.00 4.30
2185 2560 0.782384 CGGTCTTTTCGGTCTGTTCG 59.218 55.000 0.00 0.00 0.00 3.95
2186 2561 2.144482 TCGGTCTTTTCGGTCTGTTC 57.856 50.000 0.00 0.00 0.00 3.18
2187 2562 2.207590 GTTCGGTCTTTTCGGTCTGTT 58.792 47.619 0.00 0.00 0.00 3.16
2188 2563 1.861971 GTTCGGTCTTTTCGGTCTGT 58.138 50.000 0.00 0.00 0.00 3.41
2189 2564 0.782384 CGTTCGGTCTTTTCGGTCTG 59.218 55.000 0.00 0.00 0.00 3.51
2190 2565 0.942884 GCGTTCGGTCTTTTCGGTCT 60.943 55.000 0.00 0.00 0.00 3.85
2191 2566 1.490258 GCGTTCGGTCTTTTCGGTC 59.510 57.895 0.00 0.00 0.00 4.79
2192 2567 1.957695 GGCGTTCGGTCTTTTCGGT 60.958 57.895 0.00 0.00 0.00 4.69
2193 2568 2.674084 GGGCGTTCGGTCTTTTCGG 61.674 63.158 0.00 0.00 0.00 4.30
2194 2569 2.858158 GGGCGTTCGGTCTTTTCG 59.142 61.111 0.00 0.00 0.00 3.46
2195 2570 2.674084 CCGGGCGTTCGGTCTTTTC 61.674 63.158 9.80 0.00 44.60 2.29
2196 2571 2.667199 CCGGGCGTTCGGTCTTTT 60.667 61.111 9.80 0.00 44.60 2.27
2215 2590 3.862267 CAGAAAAGATCGTGCTACCTCAG 59.138 47.826 0.00 0.00 0.00 3.35
2216 2591 3.509967 TCAGAAAAGATCGTGCTACCTCA 59.490 43.478 0.00 0.00 0.00 3.86
2217 2592 4.111375 TCAGAAAAGATCGTGCTACCTC 57.889 45.455 0.00 0.00 0.00 3.85
2323 2698 5.874810 TGCACCTGTCTATCTTACAATGTTC 59.125 40.000 0.00 0.00 0.00 3.18
2355 2730 3.269381 TCATGCCCTGTTTTCTTCCCTAT 59.731 43.478 0.00 0.00 0.00 2.57
2435 2810 9.002600 TGCTATACTGTTTAATTAGCCATCATG 57.997 33.333 0.00 0.00 0.00 3.07
2455 2830 7.628769 ACATGTGAAATTGTGTCATGCTATA 57.371 32.000 0.00 0.00 39.27 1.31
2736 3283 4.408182 AGGATAGTATCGCATATTGGGC 57.592 45.455 4.06 0.00 0.00 5.36
2737 3284 7.782049 TCTTTAGGATAGTATCGCATATTGGG 58.218 38.462 4.06 0.00 0.00 4.12
2738 3285 8.687242 TCTCTTTAGGATAGTATCGCATATTGG 58.313 37.037 4.06 0.00 0.00 3.16
2739 3286 9.509855 GTCTCTTTAGGATAGTATCGCATATTG 57.490 37.037 4.06 0.00 0.00 1.90
2740 3287 9.469097 AGTCTCTTTAGGATAGTATCGCATATT 57.531 33.333 4.06 0.00 0.00 1.28
2741 3288 9.116067 GAGTCTCTTTAGGATAGTATCGCATAT 57.884 37.037 4.06 0.00 0.00 1.78
2742 3289 7.278203 CGAGTCTCTTTAGGATAGTATCGCATA 59.722 40.741 4.06 0.00 0.00 3.14
2743 3290 6.092944 CGAGTCTCTTTAGGATAGTATCGCAT 59.907 42.308 4.06 0.00 0.00 4.73
2744 3291 5.408909 CGAGTCTCTTTAGGATAGTATCGCA 59.591 44.000 4.06 0.00 0.00 5.10
2745 3292 5.638657 TCGAGTCTCTTTAGGATAGTATCGC 59.361 44.000 4.06 0.00 0.00 4.58
2746 3293 7.148540 CCTTCGAGTCTCTTTAGGATAGTATCG 60.149 44.444 4.06 0.00 0.00 2.92
2747 3294 7.662669 ACCTTCGAGTCTCTTTAGGATAGTATC 59.337 40.741 14.98 1.11 0.00 2.24
2748 3295 7.519927 ACCTTCGAGTCTCTTTAGGATAGTAT 58.480 38.462 14.98 0.00 0.00 2.12
2749 3296 6.897986 ACCTTCGAGTCTCTTTAGGATAGTA 58.102 40.000 14.98 0.00 0.00 1.82
2750 3297 5.757988 ACCTTCGAGTCTCTTTAGGATAGT 58.242 41.667 14.98 0.00 0.00 2.12
2751 3298 5.239963 GGACCTTCGAGTCTCTTTAGGATAG 59.760 48.000 14.98 0.69 36.95 2.08
2752 3299 5.131784 GGACCTTCGAGTCTCTTTAGGATA 58.868 45.833 14.98 0.00 36.95 2.59
2753 3300 3.955551 GGACCTTCGAGTCTCTTTAGGAT 59.044 47.826 14.98 3.97 36.95 3.24
2754 3301 3.354467 GGACCTTCGAGTCTCTTTAGGA 58.646 50.000 14.98 0.00 36.95 2.94
2755 3302 2.427812 GGGACCTTCGAGTCTCTTTAGG 59.572 54.545 4.97 9.15 34.20 2.69
2756 3303 3.090037 TGGGACCTTCGAGTCTCTTTAG 58.910 50.000 6.28 0.00 38.15 1.85
2757 3304 2.824341 GTGGGACCTTCGAGTCTCTTTA 59.176 50.000 6.28 0.00 38.15 1.85
2758 3305 1.619332 GTGGGACCTTCGAGTCTCTTT 59.381 52.381 6.28 0.00 38.15 2.52
2759 3306 1.258676 GTGGGACCTTCGAGTCTCTT 58.741 55.000 6.28 0.00 38.15 2.85
2760 3307 0.612453 GGTGGGACCTTCGAGTCTCT 60.612 60.000 6.28 0.00 38.15 3.10
2761 3308 0.898789 TGGTGGGACCTTCGAGTCTC 60.899 60.000 4.97 1.58 39.58 3.36
2762 3309 0.471211 TTGGTGGGACCTTCGAGTCT 60.471 55.000 4.97 0.00 39.58 3.24
2763 3310 0.037232 CTTGGTGGGACCTTCGAGTC 60.037 60.000 0.00 0.00 39.58 3.36
2764 3311 1.481056 CCTTGGTGGGACCTTCGAGT 61.481 60.000 0.00 0.00 39.58 4.18
2765 3312 1.192146 TCCTTGGTGGGACCTTCGAG 61.192 60.000 0.00 0.00 39.58 4.04
2766 3313 0.546747 ATCCTTGGTGGGACCTTCGA 60.547 55.000 0.00 0.00 39.58 3.71
2767 3314 1.139058 CTATCCTTGGTGGGACCTTCG 59.861 57.143 0.00 0.00 39.58 3.79
2768 3315 2.478292 TCTATCCTTGGTGGGACCTTC 58.522 52.381 0.00 0.00 39.58 3.46
2769 3316 2.576648 GTTCTATCCTTGGTGGGACCTT 59.423 50.000 0.00 0.00 39.58 3.50
2770 3317 2.197465 GTTCTATCCTTGGTGGGACCT 58.803 52.381 0.00 0.00 39.58 3.85
2771 3318 1.212195 GGTTCTATCCTTGGTGGGACC 59.788 57.143 0.00 0.00 38.30 4.46
2772 3319 1.134491 CGGTTCTATCCTTGGTGGGAC 60.134 57.143 0.00 0.00 38.30 4.46
2773 3320 1.200519 CGGTTCTATCCTTGGTGGGA 58.799 55.000 0.00 0.00 39.95 4.37
2774 3321 0.463833 GCGGTTCTATCCTTGGTGGG 60.464 60.000 0.00 0.00 36.20 4.61
2775 3322 0.251916 TGCGGTTCTATCCTTGGTGG 59.748 55.000 0.00 0.00 37.10 4.61
2776 3323 2.332063 ATGCGGTTCTATCCTTGGTG 57.668 50.000 0.00 0.00 0.00 4.17
2777 3324 3.306088 CGATATGCGGTTCTATCCTTGGT 60.306 47.826 0.00 0.00 36.03 3.67
2778 3325 3.056821 TCGATATGCGGTTCTATCCTTGG 60.057 47.826 0.00 0.00 41.33 3.61
2779 3326 4.174411 TCGATATGCGGTTCTATCCTTG 57.826 45.455 0.00 0.00 41.33 3.61
2780 3327 4.866508 TTCGATATGCGGTTCTATCCTT 57.133 40.909 0.00 0.00 41.33 3.36
2781 3328 4.557205 GTTTCGATATGCGGTTCTATCCT 58.443 43.478 0.00 0.00 41.33 3.24
2782 3329 3.364023 CGTTTCGATATGCGGTTCTATCC 59.636 47.826 0.00 0.00 41.33 2.59
2783 3330 3.181543 GCGTTTCGATATGCGGTTCTATC 60.182 47.826 4.28 0.00 41.33 2.08
2784 3331 2.729882 GCGTTTCGATATGCGGTTCTAT 59.270 45.455 4.28 0.00 41.33 1.98
2785 3332 2.121786 GCGTTTCGATATGCGGTTCTA 58.878 47.619 4.28 0.00 41.33 2.10
2786 3333 0.928229 GCGTTTCGATATGCGGTTCT 59.072 50.000 4.28 0.00 41.33 3.01
2787 3334 0.928229 AGCGTTTCGATATGCGGTTC 59.072 50.000 13.34 0.00 41.33 3.62
2788 3335 1.365699 AAGCGTTTCGATATGCGGTT 58.634 45.000 13.34 10.98 41.33 4.44
2789 3336 1.365699 AAAGCGTTTCGATATGCGGT 58.634 45.000 13.34 5.99 41.33 5.68
2790 3337 2.101125 CAAAAGCGTTTCGATATGCGG 58.899 47.619 13.34 2.96 41.33 5.69
2791 3338 1.508725 GCAAAAGCGTTTCGATATGCG 59.491 47.619 13.34 4.59 42.69 4.73
2792 3339 2.514902 TGCAAAAGCGTTTCGATATGC 58.485 42.857 11.60 11.60 38.20 3.14
2793 3340 3.543494 CCTTGCAAAAGCGTTTCGATATG 59.457 43.478 0.00 0.00 0.00 1.78
2794 3341 3.190535 ACCTTGCAAAAGCGTTTCGATAT 59.809 39.130 0.00 0.00 0.00 1.63
2795 3342 2.550606 ACCTTGCAAAAGCGTTTCGATA 59.449 40.909 0.00 0.00 0.00 2.92
2796 3343 1.336755 ACCTTGCAAAAGCGTTTCGAT 59.663 42.857 0.00 0.00 0.00 3.59
2797 3344 0.736053 ACCTTGCAAAAGCGTTTCGA 59.264 45.000 0.00 0.00 0.00 3.71
2798 3345 0.845768 CACCTTGCAAAAGCGTTTCG 59.154 50.000 0.00 0.00 0.00 3.46
2799 3346 1.202359 TCCACCTTGCAAAAGCGTTTC 60.202 47.619 0.00 0.00 0.00 2.78
2800 3347 0.820871 TCCACCTTGCAAAAGCGTTT 59.179 45.000 0.00 0.00 0.00 3.60
2801 3348 1.039856 ATCCACCTTGCAAAAGCGTT 58.960 45.000 0.00 0.00 0.00 4.84
2802 3349 1.904287 TATCCACCTTGCAAAAGCGT 58.096 45.000 0.00 0.00 0.00 5.07
2803 3350 2.423185 TGATATCCACCTTGCAAAAGCG 59.577 45.455 0.00 0.00 0.00 4.68
2804 3351 4.660789 ATGATATCCACCTTGCAAAAGC 57.339 40.909 0.00 0.00 0.00 3.51
2805 3352 7.099266 TGTAATGATATCCACCTTGCAAAAG 57.901 36.000 0.00 0.00 0.00 2.27
2806 3353 7.341512 TGATGTAATGATATCCACCTTGCAAAA 59.658 33.333 0.00 0.00 0.00 2.44
2807 3354 6.832900 TGATGTAATGATATCCACCTTGCAAA 59.167 34.615 0.00 0.00 0.00 3.68
2808 3355 6.363882 TGATGTAATGATATCCACCTTGCAA 58.636 36.000 0.00 0.00 0.00 4.08
2809 3356 5.939447 TGATGTAATGATATCCACCTTGCA 58.061 37.500 0.00 0.00 0.00 4.08
2810 3357 6.262944 TGTTGATGTAATGATATCCACCTTGC 59.737 38.462 0.00 0.00 0.00 4.01
2811 3358 7.806409 TGTTGATGTAATGATATCCACCTTG 57.194 36.000 0.00 0.00 0.00 3.61
2813 3360 9.507329 GTAATGTTGATGTAATGATATCCACCT 57.493 33.333 0.00 0.00 0.00 4.00
2814 3361 9.283768 TGTAATGTTGATGTAATGATATCCACC 57.716 33.333 0.00 0.00 0.00 4.61
2826 3373 9.958180 CCCCATCTATTATGTAATGTTGATGTA 57.042 33.333 15.51 0.00 33.12 2.29
2827 3374 8.668653 TCCCCATCTATTATGTAATGTTGATGT 58.331 33.333 15.51 0.00 33.12 3.06
2828 3375 9.690913 ATCCCCATCTATTATGTAATGTTGATG 57.309 33.333 12.75 12.75 33.83 3.07
2831 3378 9.958180 TGTATCCCCATCTATTATGTAATGTTG 57.042 33.333 0.00 0.00 0.00 3.33
2841 3388 8.107095 GCCTTTTGTATGTATCCCCATCTATTA 58.893 37.037 0.00 0.00 0.00 0.98
2842 3389 6.948309 GCCTTTTGTATGTATCCCCATCTATT 59.052 38.462 0.00 0.00 0.00 1.73
2843 3390 6.045459 TGCCTTTTGTATGTATCCCCATCTAT 59.955 38.462 0.00 0.00 0.00 1.98
2844 3391 5.371176 TGCCTTTTGTATGTATCCCCATCTA 59.629 40.000 0.00 0.00 0.00 1.98
2845 3392 4.167892 TGCCTTTTGTATGTATCCCCATCT 59.832 41.667 0.00 0.00 0.00 2.90
2846 3393 4.469657 TGCCTTTTGTATGTATCCCCATC 58.530 43.478 0.00 0.00 0.00 3.51
2847 3394 4.534647 TGCCTTTTGTATGTATCCCCAT 57.465 40.909 0.00 0.00 0.00 4.00
2848 3395 4.534647 ATGCCTTTTGTATGTATCCCCA 57.465 40.909 0.00 0.00 0.00 4.96
2849 3396 5.381757 TGTATGCCTTTTGTATGTATCCCC 58.618 41.667 0.00 0.00 0.00 4.81
2850 3397 6.952773 TTGTATGCCTTTTGTATGTATCCC 57.047 37.500 0.00 0.00 0.00 3.85
2867 3414 4.873768 TGTATTCGTGTGGCATTGTATG 57.126 40.909 0.00 0.00 0.00 2.39
2868 3415 5.122519 TGATGTATTCGTGTGGCATTGTAT 58.877 37.500 0.00 0.00 0.00 2.29
2869 3416 4.508662 TGATGTATTCGTGTGGCATTGTA 58.491 39.130 0.00 0.00 0.00 2.41
2870 3417 3.342719 TGATGTATTCGTGTGGCATTGT 58.657 40.909 0.00 0.00 0.00 2.71
2871 3418 4.354071 TTGATGTATTCGTGTGGCATTG 57.646 40.909 0.00 0.00 0.00 2.82
2872 3419 6.882610 ATATTGATGTATTCGTGTGGCATT 57.117 33.333 0.00 0.00 0.00 3.56
2873 3420 7.823799 TGATATATTGATGTATTCGTGTGGCAT 59.176 33.333 0.00 0.00 0.00 4.40
2874 3421 7.158021 TGATATATTGATGTATTCGTGTGGCA 58.842 34.615 0.00 0.00 0.00 4.92
2875 3422 7.595311 TGATATATTGATGTATTCGTGTGGC 57.405 36.000 0.00 0.00 0.00 5.01
2894 3441 9.809096 GTCGGATGTTGATCTTATGTATGATAT 57.191 33.333 0.00 0.00 0.00 1.63
2895 3442 9.025041 AGTCGGATGTTGATCTTATGTATGATA 57.975 33.333 0.00 0.00 0.00 2.15
2896 3443 7.901029 AGTCGGATGTTGATCTTATGTATGAT 58.099 34.615 0.00 0.00 0.00 2.45
2897 3444 7.290110 AGTCGGATGTTGATCTTATGTATGA 57.710 36.000 0.00 0.00 0.00 2.15
2898 3445 7.271438 CGTAGTCGGATGTTGATCTTATGTATG 59.729 40.741 0.00 0.00 0.00 2.39
2899 3446 7.306213 CGTAGTCGGATGTTGATCTTATGTAT 58.694 38.462 0.00 0.00 0.00 2.29
2900 3447 6.665465 CGTAGTCGGATGTTGATCTTATGTA 58.335 40.000 0.00 0.00 0.00 2.29
2901 3448 5.520632 CGTAGTCGGATGTTGATCTTATGT 58.479 41.667 0.00 0.00 0.00 2.29
2917 3464 3.491639 TGTTTGTGTTTCATCCGTAGTCG 59.508 43.478 0.00 0.00 0.00 4.18
2918 3465 4.748102 TCTGTTTGTGTTTCATCCGTAGTC 59.252 41.667 0.00 0.00 0.00 2.59
2919 3466 4.699637 TCTGTTTGTGTTTCATCCGTAGT 58.300 39.130 0.00 0.00 0.00 2.73
2920 3467 5.666969 TTCTGTTTGTGTTTCATCCGTAG 57.333 39.130 0.00 0.00 0.00 3.51
2921 3468 5.587043 AGTTTCTGTTTGTGTTTCATCCGTA 59.413 36.000 0.00 0.00 0.00 4.02
2922 3469 4.398044 AGTTTCTGTTTGTGTTTCATCCGT 59.602 37.500 0.00 0.00 0.00 4.69
2923 3470 4.920376 AGTTTCTGTTTGTGTTTCATCCG 58.080 39.130 0.00 0.00 0.00 4.18
2924 3471 5.890334 TGAGTTTCTGTTTGTGTTTCATCC 58.110 37.500 0.00 0.00 0.00 3.51
2925 3472 7.461416 CGTTTGAGTTTCTGTTTGTGTTTCATC 60.461 37.037 0.00 0.00 0.00 2.92
2935 3482 4.638421 TGGATGTCGTTTGAGTTTCTGTTT 59.362 37.500 0.00 0.00 0.00 2.83
2938 3485 3.058914 GGTGGATGTCGTTTGAGTTTCTG 60.059 47.826 0.00 0.00 0.00 3.02
2939 3486 3.139077 GGTGGATGTCGTTTGAGTTTCT 58.861 45.455 0.00 0.00 0.00 2.52
2940 3487 2.225727 GGGTGGATGTCGTTTGAGTTTC 59.774 50.000 0.00 0.00 0.00 2.78
2942 3489 1.420138 AGGGTGGATGTCGTTTGAGTT 59.580 47.619 0.00 0.00 0.00 3.01
2943 3490 1.056660 AGGGTGGATGTCGTTTGAGT 58.943 50.000 0.00 0.00 0.00 3.41
2944 3491 1.442769 CAGGGTGGATGTCGTTTGAG 58.557 55.000 0.00 0.00 0.00 3.02
2945 3492 0.605319 GCAGGGTGGATGTCGTTTGA 60.605 55.000 0.00 0.00 0.00 2.69
2946 3493 0.606401 AGCAGGGTGGATGTCGTTTG 60.606 55.000 0.00 0.00 0.00 2.93
2948 3495 0.537188 CTAGCAGGGTGGATGTCGTT 59.463 55.000 0.00 0.00 0.00 3.85
2951 3498 1.147153 GGCTAGCAGGGTGGATGTC 59.853 63.158 18.24 0.00 0.00 3.06
2953 3500 2.335092 CTGGGCTAGCAGGGTGGATG 62.335 65.000 18.24 0.00 0.00 3.51
2955 3502 2.688666 CTGGGCTAGCAGGGTGGA 60.689 66.667 18.24 0.00 0.00 4.02
2956 3503 3.801997 CCTGGGCTAGCAGGGTGG 61.802 72.222 18.24 7.04 35.04 4.61
2957 3504 4.496336 GCCTGGGCTAGCAGGGTG 62.496 72.222 19.76 4.97 38.95 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.