Multiple sequence alignment - TraesCS1B01G102600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G102600 chr1B 100.000 4702 0 0 1 4702 112698813 112694112 0.000000e+00 8684.0
1 TraesCS1B01G102600 chr1B 79.274 661 103 15 4056 4702 674797987 674797347 9.350000e-117 431.0
2 TraesCS1B01G102600 chr1B 78.937 508 91 9 4143 4636 396973612 396974117 9.750000e-87 331.0
3 TraesCS1B01G102600 chr1B 93.243 74 3 2 792 864 363564653 363564725 1.790000e-19 108.0
4 TraesCS1B01G102600 chr1D 95.045 3209 91 26 857 4042 71046658 71043495 0.000000e+00 4983.0
5 TraesCS1B01G102600 chr1D 89.247 651 68 2 1 649 193463331 193463981 0.000000e+00 813.0
6 TraesCS1B01G102600 chr1D 87.365 649 65 8 4056 4702 71042315 71041682 0.000000e+00 728.0
7 TraesCS1B01G102600 chr1A 94.983 2292 72 16 1770 4042 71560169 71557902 0.000000e+00 3555.0
8 TraesCS1B01G102600 chr1A 94.225 935 29 12 857 1772 71561372 71560444 0.000000e+00 1404.0
9 TraesCS1B01G102600 chr1A 86.308 650 62 11 4056 4702 71557754 71557129 0.000000e+00 682.0
10 TraesCS1B01G102600 chr1A 80.122 654 122 7 1 649 321285014 321284364 9.150000e-132 481.0
11 TraesCS1B01G102600 chr1A 95.161 62 3 0 653 714 71561429 71561368 1.080000e-16 99.0
12 TraesCS1B01G102600 chr4B 86.615 650 86 1 1 650 79260348 79260996 0.000000e+00 717.0
13 TraesCS1B01G102600 chr7D 85.670 649 93 0 1 649 433744277 433744925 0.000000e+00 684.0
14 TraesCS1B01G102600 chr6A 84.769 650 98 1 1 649 196695230 196694581 0.000000e+00 651.0
15 TraesCS1B01G102600 chr6A 82.609 138 11 7 732 858 7703751 7703616 4.970000e-20 110.0
16 TraesCS1B01G102600 chr5D 84.000 650 98 6 2 647 541019651 541019004 1.860000e-173 619.0
17 TraesCS1B01G102600 chr5D 83.172 309 41 8 4122 4420 63108436 63108743 6.000000e-69 272.0
18 TraesCS1B01G102600 chr5D 77.103 428 80 9 4165 4576 302160748 302161173 1.020000e-56 231.0
19 TraesCS1B01G102600 chr5D 79.197 274 53 3 4152 4421 302106594 302106867 2.230000e-43 187.0
20 TraesCS1B01G102600 chr5D 83.436 163 27 0 4531 4693 150272076 150271914 8.150000e-33 152.0
21 TraesCS1B01G102600 chr3D 81.651 654 113 6 1 649 84479573 84480224 1.930000e-148 536.0
22 TraesCS1B01G102600 chr3D 94.286 70 4 0 792 861 442772581 442772650 1.790000e-19 108.0
23 TraesCS1B01G102600 chr6D 81.221 655 116 6 1 650 470785841 470786493 5.390000e-144 521.0
24 TraesCS1B01G102600 chr3A 79.084 655 130 6 1 650 709120359 709121011 1.200000e-120 444.0
25 TraesCS1B01G102600 chr3A 75.960 495 98 14 4175 4654 529214441 529213953 7.870000e-58 235.0
26 TraesCS1B01G102600 chr2D 77.168 565 117 9 4123 4684 26462497 26463052 7.590000e-83 318.0
27 TraesCS1B01G102600 chr2D 97.297 37 1 0 2444 2480 570132191 570132227 3.930000e-06 63.9
28 TraesCS1B01G102600 chr7B 76.254 598 99 23 4053 4637 614154133 614154700 1.290000e-70 278.0
29 TraesCS1B01G102600 chr7B 94.631 149 8 0 709 857 564745172 564745320 1.020000e-56 231.0
30 TraesCS1B01G102600 chr2A 73.704 540 128 12 4146 4680 28687171 28687701 1.030000e-46 198.0
31 TraesCS1B01G102600 chr3B 79.924 264 42 9 2504 2761 728611351 728611609 2.890000e-42 183.0
32 TraesCS1B01G102600 chr3B 88.194 144 9 3 721 856 222787713 222787856 1.050000e-36 165.0
33 TraesCS1B01G102600 chr6B 87.500 144 11 1 721 857 102567684 102567827 4.870000e-35 159.0
34 TraesCS1B01G102600 chr7A 78.333 240 38 12 2504 2739 278335304 278335533 4.900000e-30 143.0
35 TraesCS1B01G102600 chr5B 86.232 138 12 3 726 856 583708725 583708862 4.900000e-30 143.0
36 TraesCS1B01G102600 chr2B 97.101 69 1 1 792 860 391786251 391786318 1.070000e-21 115.0
37 TraesCS1B01G102600 chr2B 88.525 61 6 1 3992 4051 41432671 41432611 6.530000e-09 73.1
38 TraesCS1B01G102600 chr4D 95.588 68 2 1 792 859 499742175 499742241 1.790000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G102600 chr1B 112694112 112698813 4701 True 8684.0 8684 100.00000 1 4702 1 chr1B.!!$R1 4701
1 TraesCS1B01G102600 chr1B 674797347 674797987 640 True 431.0 431 79.27400 4056 4702 1 chr1B.!!$R2 646
2 TraesCS1B01G102600 chr1B 396973612 396974117 505 False 331.0 331 78.93700 4143 4636 1 chr1B.!!$F2 493
3 TraesCS1B01G102600 chr1D 71041682 71046658 4976 True 2855.5 4983 91.20500 857 4702 2 chr1D.!!$R1 3845
4 TraesCS1B01G102600 chr1D 193463331 193463981 650 False 813.0 813 89.24700 1 649 1 chr1D.!!$F1 648
5 TraesCS1B01G102600 chr1A 71557129 71561429 4300 True 1435.0 3555 92.66925 653 4702 4 chr1A.!!$R2 4049
6 TraesCS1B01G102600 chr1A 321284364 321285014 650 True 481.0 481 80.12200 1 649 1 chr1A.!!$R1 648
7 TraesCS1B01G102600 chr4B 79260348 79260996 648 False 717.0 717 86.61500 1 650 1 chr4B.!!$F1 649
8 TraesCS1B01G102600 chr7D 433744277 433744925 648 False 684.0 684 85.67000 1 649 1 chr7D.!!$F1 648
9 TraesCS1B01G102600 chr6A 196694581 196695230 649 True 651.0 651 84.76900 1 649 1 chr6A.!!$R2 648
10 TraesCS1B01G102600 chr5D 541019004 541019651 647 True 619.0 619 84.00000 2 647 1 chr5D.!!$R2 645
11 TraesCS1B01G102600 chr3D 84479573 84480224 651 False 536.0 536 81.65100 1 649 1 chr3D.!!$F1 648
12 TraesCS1B01G102600 chr6D 470785841 470786493 652 False 521.0 521 81.22100 1 650 1 chr6D.!!$F1 649
13 TraesCS1B01G102600 chr3A 709120359 709121011 652 False 444.0 444 79.08400 1 650 1 chr3A.!!$F1 649
14 TraesCS1B01G102600 chr2D 26462497 26463052 555 False 318.0 318 77.16800 4123 4684 1 chr2D.!!$F1 561
15 TraesCS1B01G102600 chr7B 614154133 614154700 567 False 278.0 278 76.25400 4053 4637 1 chr7B.!!$F2 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 770 0.538118 GCGGGTGGTGGAGTTGTATA 59.462 55.000 0.00 0.0 0.00 1.47 F
1068 1082 0.238289 CAACATCTCGCCACACAACC 59.762 55.000 0.00 0.0 0.00 3.77 F
1409 1426 1.407258 CTGGGTTTTCGCTTGGAAACA 59.593 47.619 1.97 0.0 44.07 2.83 F
2198 2504 1.164411 TGTTGCCATCGTTGATGTCC 58.836 50.000 6.10 0.0 38.28 4.02 F
2774 3080 3.462205 AGGGGTAAGTTTCCAACAGAGTT 59.538 43.478 0.56 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 2079 0.031857 CACCACATTTTTGCCTGCGA 59.968 50.000 0.0 0.0 0.00 5.10 R
2198 2504 1.069636 GTTGAACAAAGCTCCTCTGCG 60.070 52.381 0.0 0.0 38.13 5.18 R
2337 2643 1.421268 ACACAGAAGAATGTCAGGGCA 59.579 47.619 0.0 0.0 0.00 5.36 R
3415 3736 0.594796 GGTCCACAAAAACTGCTGCG 60.595 55.000 0.0 0.0 0.00 5.18 R
4540 6046 0.524862 GAGGCCGAAGAACTACGACA 59.475 55.000 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.644234 TGATCCAAACAACAGAGAAAGCAA 59.356 37.500 0.00 0.00 0.00 3.91
67 68 7.284034 ACAGAGAAAGCAACCATATCAATTAGG 59.716 37.037 0.00 0.00 0.00 2.69
155 156 2.011222 GGAAACGGCCGACAAATGATA 58.989 47.619 35.90 0.00 0.00 2.15
234 236 1.739929 CTATTGCACGCGACCACCA 60.740 57.895 15.93 0.00 0.00 4.17
235 237 1.078778 TATTGCACGCGACCACCAT 60.079 52.632 15.93 3.24 0.00 3.55
254 256 2.877097 TGGGAACTTCATAGCAGCAA 57.123 45.000 0.00 0.00 0.00 3.91
280 282 6.183361 CCACATGGTTTCTACCTCATATCTCA 60.183 42.308 0.00 0.00 45.27 3.27
319 321 1.682854 ACTATGGCAATTCGCAATGGG 59.317 47.619 0.00 0.00 45.17 4.00
369 371 5.232838 GCAACAAAGTTCAAGTTGAATCTGG 59.767 40.000 20.72 15.69 43.93 3.86
370 372 4.936891 ACAAAGTTCAAGTTGAATCTGGC 58.063 39.130 20.72 8.14 38.79 4.85
407 409 3.249559 GGAATCCGTGCAGAATCAAGATC 59.750 47.826 0.00 0.00 0.00 2.75
414 419 4.371786 GTGCAGAATCAAGATCATACGGA 58.628 43.478 0.00 0.00 0.00 4.69
418 423 5.121454 GCAGAATCAAGATCATACGGAATCC 59.879 44.000 0.00 0.00 0.00 3.01
448 454 3.379372 CCACGATTTTGGAATGCAGAGAT 59.621 43.478 0.00 0.00 39.24 2.75
484 490 2.240921 TGCCAATGCAGTATACTCCCAA 59.759 45.455 1.26 0.00 44.23 4.12
485 491 3.287222 GCCAATGCAGTATACTCCCAAA 58.713 45.455 1.26 0.00 37.47 3.28
488 494 5.680619 CCAATGCAGTATACTCCCAAAGTA 58.319 41.667 1.26 0.00 44.49 2.24
506 512 4.471904 AGTATTCGTGAAGCCAATGAGA 57.528 40.909 0.00 0.00 0.00 3.27
527 533 5.324409 AGACTGCTCATATCTTAGCTAGCT 58.676 41.667 23.12 23.12 39.53 3.32
617 624 9.907576 CTATTGTAAACGATCTGTCTTTGATTC 57.092 33.333 0.00 0.00 0.00 2.52
628 635 7.596749 TCTGTCTTTGATTCGAGGAATAAAC 57.403 36.000 0.00 0.00 31.89 2.01
686 693 9.862149 CCCTTATCTGTGGGTACTAAATTTAAT 57.138 33.333 0.00 0.00 38.65 1.40
701 708 1.823797 TTAATCCAAACCCGTTCCCG 58.176 50.000 0.00 0.00 0.00 5.14
706 713 1.211709 CAAACCCGTTCCCGAATGC 59.788 57.895 0.00 0.00 35.63 3.56
714 721 2.220133 CCGTTCCCGAATGCGTAATTAG 59.780 50.000 0.00 0.00 35.63 1.73
716 723 1.493772 TCCCGAATGCGTAATTAGCG 58.506 50.000 0.00 0.00 37.44 4.26
717 724 1.202440 TCCCGAATGCGTAATTAGCGT 60.202 47.619 0.00 3.59 37.44 5.07
718 725 1.070843 CCCGAATGCGTAATTAGCGTG 60.071 52.381 0.00 0.00 37.44 5.34
719 726 1.591158 CCGAATGCGTAATTAGCGTGT 59.409 47.619 0.00 0.00 37.44 4.49
720 727 2.596575 CCGAATGCGTAATTAGCGTGTG 60.597 50.000 0.00 3.36 37.44 3.82
721 728 2.363220 GAATGCGTAATTAGCGTGTGC 58.637 47.619 8.52 0.00 43.24 4.57
755 762 4.077184 GATCGTGCGGGTGGTGGA 62.077 66.667 0.00 0.00 0.00 4.02
756 763 4.082523 ATCGTGCGGGTGGTGGAG 62.083 66.667 0.00 0.00 0.00 3.86
758 765 4.619227 CGTGCGGGTGGTGGAGTT 62.619 66.667 0.00 0.00 0.00 3.01
759 766 2.978010 GTGCGGGTGGTGGAGTTG 60.978 66.667 0.00 0.00 0.00 3.16
760 767 3.484806 TGCGGGTGGTGGAGTTGT 61.485 61.111 0.00 0.00 0.00 3.32
761 768 2.141448 TGCGGGTGGTGGAGTTGTA 61.141 57.895 0.00 0.00 0.00 2.41
762 769 1.298667 GCGGGTGGTGGAGTTGTAT 59.701 57.895 0.00 0.00 0.00 2.29
763 770 0.538118 GCGGGTGGTGGAGTTGTATA 59.462 55.000 0.00 0.00 0.00 1.47
764 771 1.472728 GCGGGTGGTGGAGTTGTATAG 60.473 57.143 0.00 0.00 0.00 1.31
765 772 1.138266 CGGGTGGTGGAGTTGTATAGG 59.862 57.143 0.00 0.00 0.00 2.57
766 773 2.474112 GGGTGGTGGAGTTGTATAGGA 58.526 52.381 0.00 0.00 0.00 2.94
767 774 3.046374 GGGTGGTGGAGTTGTATAGGAT 58.954 50.000 0.00 0.00 0.00 3.24
768 775 3.181454 GGGTGGTGGAGTTGTATAGGATG 60.181 52.174 0.00 0.00 0.00 3.51
769 776 3.454812 GGTGGTGGAGTTGTATAGGATGT 59.545 47.826 0.00 0.00 0.00 3.06
770 777 4.080526 GGTGGTGGAGTTGTATAGGATGTT 60.081 45.833 0.00 0.00 0.00 2.71
771 778 5.497474 GTGGTGGAGTTGTATAGGATGTTT 58.503 41.667 0.00 0.00 0.00 2.83
772 779 5.354234 GTGGTGGAGTTGTATAGGATGTTTG 59.646 44.000 0.00 0.00 0.00 2.93
773 780 5.013704 TGGTGGAGTTGTATAGGATGTTTGT 59.986 40.000 0.00 0.00 0.00 2.83
774 781 5.585047 GGTGGAGTTGTATAGGATGTTTGTC 59.415 44.000 0.00 0.00 0.00 3.18
775 782 6.170506 GTGGAGTTGTATAGGATGTTTGTCA 58.829 40.000 0.00 0.00 0.00 3.58
776 783 6.092259 GTGGAGTTGTATAGGATGTTTGTCAC 59.908 42.308 0.00 0.00 0.00 3.67
777 784 5.291128 GGAGTTGTATAGGATGTTTGTCACG 59.709 44.000 0.00 0.00 0.00 4.35
778 785 4.630069 AGTTGTATAGGATGTTTGTCACGC 59.370 41.667 0.00 0.00 0.00 5.34
779 786 3.527533 TGTATAGGATGTTTGTCACGCC 58.472 45.455 0.00 0.00 0.00 5.68
780 787 3.196901 TGTATAGGATGTTTGTCACGCCT 59.803 43.478 0.00 0.00 37.72 5.52
781 788 2.851263 TAGGATGTTTGTCACGCCTT 57.149 45.000 0.00 0.00 36.21 4.35
782 789 1.981256 AGGATGTTTGTCACGCCTTT 58.019 45.000 0.00 0.00 32.51 3.11
783 790 1.608590 AGGATGTTTGTCACGCCTTTG 59.391 47.619 0.00 0.00 32.51 2.77
784 791 1.336755 GGATGTTTGTCACGCCTTTGT 59.663 47.619 0.00 0.00 0.00 2.83
785 792 2.550606 GGATGTTTGTCACGCCTTTGTA 59.449 45.455 0.00 0.00 0.00 2.41
786 793 3.003897 GGATGTTTGTCACGCCTTTGTAA 59.996 43.478 0.00 0.00 0.00 2.41
787 794 3.408288 TGTTTGTCACGCCTTTGTAAC 57.592 42.857 0.00 0.00 0.00 2.50
788 795 3.011119 TGTTTGTCACGCCTTTGTAACT 58.989 40.909 0.00 0.00 0.00 2.24
789 796 3.064271 TGTTTGTCACGCCTTTGTAACTC 59.936 43.478 0.00 0.00 0.00 3.01
790 797 2.605837 TGTCACGCCTTTGTAACTCA 57.394 45.000 0.00 0.00 0.00 3.41
791 798 2.907634 TGTCACGCCTTTGTAACTCAA 58.092 42.857 0.00 0.00 0.00 3.02
792 799 2.869801 TGTCACGCCTTTGTAACTCAAG 59.130 45.455 0.00 0.00 37.35 3.02
793 800 3.128349 GTCACGCCTTTGTAACTCAAGA 58.872 45.455 0.00 0.00 37.35 3.02
794 801 3.059800 GTCACGCCTTTGTAACTCAAGAC 60.060 47.826 0.00 0.00 37.35 3.01
795 802 3.131396 CACGCCTTTGTAACTCAAGACT 58.869 45.455 0.00 0.00 37.35 3.24
796 803 3.560068 CACGCCTTTGTAACTCAAGACTT 59.440 43.478 0.00 0.00 37.35 3.01
797 804 4.035208 CACGCCTTTGTAACTCAAGACTTT 59.965 41.667 0.00 0.00 37.35 2.66
798 805 4.272748 ACGCCTTTGTAACTCAAGACTTTC 59.727 41.667 0.00 0.00 37.35 2.62
799 806 4.511826 CGCCTTTGTAACTCAAGACTTTCT 59.488 41.667 0.00 0.00 37.35 2.52
800 807 5.694910 CGCCTTTGTAACTCAAGACTTTCTA 59.305 40.000 0.00 0.00 37.35 2.10
801 808 6.369065 CGCCTTTGTAACTCAAGACTTTCTAT 59.631 38.462 0.00 0.00 37.35 1.98
802 809 7.522374 GCCTTTGTAACTCAAGACTTTCTATG 58.478 38.462 0.00 0.00 37.35 2.23
803 810 7.522374 CCTTTGTAACTCAAGACTTTCTATGC 58.478 38.462 0.00 0.00 37.35 3.14
804 811 7.361286 CCTTTGTAACTCAAGACTTTCTATGCC 60.361 40.741 0.00 0.00 37.35 4.40
805 812 6.360370 TGTAACTCAAGACTTTCTATGCCT 57.640 37.500 0.00 0.00 0.00 4.75
806 813 6.769512 TGTAACTCAAGACTTTCTATGCCTT 58.230 36.000 0.00 0.00 0.00 4.35
807 814 7.224297 TGTAACTCAAGACTTTCTATGCCTTT 58.776 34.615 0.00 0.00 0.00 3.11
808 815 7.719633 TGTAACTCAAGACTTTCTATGCCTTTT 59.280 33.333 0.00 0.00 0.00 2.27
809 816 6.809630 ACTCAAGACTTTCTATGCCTTTTC 57.190 37.500 0.00 0.00 0.00 2.29
810 817 6.538263 ACTCAAGACTTTCTATGCCTTTTCT 58.462 36.000 0.00 0.00 0.00 2.52
811 818 7.001073 ACTCAAGACTTTCTATGCCTTTTCTT 58.999 34.615 0.00 0.00 0.00 2.52
812 819 7.503902 ACTCAAGACTTTCTATGCCTTTTCTTT 59.496 33.333 0.00 0.00 0.00 2.52
813 820 8.237811 TCAAGACTTTCTATGCCTTTTCTTTT 57.762 30.769 0.00 0.00 0.00 2.27
814 821 8.695456 TCAAGACTTTCTATGCCTTTTCTTTTT 58.305 29.630 0.00 0.00 0.00 1.94
1068 1082 0.238289 CAACATCTCGCCACACAACC 59.762 55.000 0.00 0.00 0.00 3.77
1271 1285 4.602696 CTACGAGTACGCCCGCGG 62.603 72.222 21.04 21.04 44.69 6.46
1409 1426 1.407258 CTGGGTTTTCGCTTGGAAACA 59.593 47.619 1.97 0.00 44.07 2.83
1467 1484 7.274447 TCCAAATTGATCTCTTTTTGCAAACT 58.726 30.769 12.39 0.00 0.00 2.66
1470 1487 5.499139 TTGATCTCTTTTTGCAAACTCGT 57.501 34.783 12.39 0.00 0.00 4.18
1486 1503 6.625081 GCAAACTCGTAAAATTAATCCTGGCT 60.625 38.462 0.00 0.00 0.00 4.75
1519 1536 7.478322 TGACTATACTTCGGAAGTTGATGTAC 58.522 38.462 26.71 13.49 42.81 2.90
1527 1544 4.161377 TCGGAAGTTGATGTACATGGATCA 59.839 41.667 14.43 2.53 0.00 2.92
1621 1645 2.988570 ACTAGTATAGCCGATCGGGAG 58.011 52.381 33.98 10.91 44.39 4.30
1673 1700 4.873259 GGTTGTGAGAGAGAATTTAGGAGC 59.127 45.833 0.00 0.00 0.00 4.70
1700 1727 6.258727 ACAAGGTATCAATAGTTTCAGCGATG 59.741 38.462 0.00 0.00 0.00 3.84
1745 1772 5.649782 ATGGAATAAGGTTGTGAAAGCTG 57.350 39.130 0.00 0.00 0.00 4.24
1775 2079 9.880157 CATTCAGATATTTCCATGTTTTTCCTT 57.120 29.630 0.00 0.00 0.00 3.36
1891 2195 9.686683 ATTCCAAAGTTAGCATAGACAACTTAT 57.313 29.630 0.00 0.00 40.63 1.73
2105 2411 3.006752 GTCTGGCAGAGAGGGAATATGAG 59.993 52.174 19.38 0.00 0.00 2.90
2198 2504 1.164411 TGTTGCCATCGTTGATGTCC 58.836 50.000 6.10 0.00 38.28 4.02
2305 2611 7.281999 GCTCTGTTCCAAATTTTCTAGCTAGAT 59.718 37.037 23.81 6.91 31.40 1.98
2308 2614 9.118300 CTGTTCCAAATTTTCTAGCTAGATCAT 57.882 33.333 23.81 15.31 31.40 2.45
2337 2643 8.829373 AATCTGGGTAGCAGAATCTTTTAATT 57.171 30.769 0.00 0.00 31.89 1.40
2367 2673 3.644966 TTCTTCTGTGTTCCACTTGGT 57.355 42.857 0.00 0.00 35.11 3.67
2576 2882 3.724508 TTTTCCGATGTGCATGTGTTT 57.275 38.095 0.00 0.00 0.00 2.83
2629 2935 9.330063 CTAGCAGGAATAATCTGTCAATGTTAA 57.670 33.333 0.00 0.00 34.89 2.01
2630 2936 8.218338 AGCAGGAATAATCTGTCAATGTTAAG 57.782 34.615 0.00 0.00 34.89 1.85
2631 2937 8.049117 AGCAGGAATAATCTGTCAATGTTAAGA 58.951 33.333 0.00 0.00 34.89 2.10
2632 2938 8.677300 GCAGGAATAATCTGTCAATGTTAAGAA 58.323 33.333 0.00 0.00 34.89 2.52
2774 3080 3.462205 AGGGGTAAGTTTCCAACAGAGTT 59.538 43.478 0.56 0.00 0.00 3.01
2789 3095 5.422214 ACAGAGTTAGGGTTTACTGGATG 57.578 43.478 0.00 0.00 0.00 3.51
2795 3101 5.249852 AGTTAGGGTTTACTGGATGCAACTA 59.750 40.000 0.00 0.00 0.00 2.24
2798 3104 5.010282 AGGGTTTACTGGATGCAACTAAAG 58.990 41.667 0.00 0.00 0.00 1.85
2801 3107 6.239204 GGGTTTACTGGATGCAACTAAAGTTT 60.239 38.462 0.00 0.00 35.83 2.66
2816 3122 9.594478 CAACTAAAGTTTTGGAATAGTTGGTTT 57.406 29.630 14.74 0.00 44.75 3.27
2996 3303 8.791675 TCCTTTTGTTTTGCTTTTTCAAAGATT 58.208 25.926 0.25 0.00 37.27 2.40
3058 3369 4.830600 TCAAGTCATACACGGGCATATCTA 59.169 41.667 0.00 0.00 0.00 1.98
3302 3614 5.258685 TGTACGAAAACGTGCTTCTTATG 57.741 39.130 11.30 0.00 0.00 1.90
3415 3736 9.023967 GGTTTAGTTGAATCATATGATTGTTGC 57.976 33.333 30.86 18.46 44.14 4.17
3470 3792 6.713450 TGACAATTACTTCACTTCTTAACCCC 59.287 38.462 0.00 0.00 0.00 4.95
3484 3806 7.344612 ACTTCTTAACCCCTTTGAAATTCTTGT 59.655 33.333 0.00 0.00 0.00 3.16
3490 3812 4.262592 CCCCTTTGAAATTCTTGTCCCTTG 60.263 45.833 0.00 0.00 0.00 3.61
3511 3833 5.063180 TGATGCAATTTCTCATGTTGGAC 57.937 39.130 0.00 0.00 0.00 4.02
3721 4043 5.880332 TGTGATCTTACCTGTAAATGCTTCC 59.120 40.000 0.00 0.00 0.00 3.46
3903 4226 7.160457 TCAATGTATATTCAGAATTCCCCCA 57.840 36.000 0.00 0.00 0.00 4.96
3997 4321 1.951209 TCACACTGATTCCTAGGGCA 58.049 50.000 9.46 4.38 0.00 5.36
4043 4367 2.660189 GCACTTTGCATATGTGGCTT 57.340 45.000 4.29 0.00 44.26 4.35
4047 4371 3.057386 CACTTTGCATATGTGGCTTGACA 60.057 43.478 4.29 0.00 0.00 3.58
4054 4378 2.032170 TGTGGCTTGACACATGCAC 58.968 52.632 5.03 7.94 45.70 4.57
4084 5574 6.959639 ACAGGCATAACATAAACCCATAAG 57.040 37.500 0.00 0.00 0.00 1.73
4110 5602 4.273480 AGTCTTAAACACACACTCACATGC 59.727 41.667 0.00 0.00 0.00 4.06
4112 5604 4.637977 TCTTAAACACACACTCACATGCAA 59.362 37.500 0.00 0.00 0.00 4.08
4113 5605 5.299028 TCTTAAACACACACTCACATGCAAT 59.701 36.000 0.00 0.00 0.00 3.56
4114 5606 4.389890 AAACACACACTCACATGCAATT 57.610 36.364 0.00 0.00 0.00 2.32
4115 5607 5.512753 AAACACACACTCACATGCAATTA 57.487 34.783 0.00 0.00 0.00 1.40
4116 5608 5.512753 AACACACACTCACATGCAATTAA 57.487 34.783 0.00 0.00 0.00 1.40
4117 5609 5.512753 ACACACACTCACATGCAATTAAA 57.487 34.783 0.00 0.00 0.00 1.52
4118 5610 5.280945 ACACACACTCACATGCAATTAAAC 58.719 37.500 0.00 0.00 0.00 2.01
4119 5611 5.067674 ACACACACTCACATGCAATTAAACT 59.932 36.000 0.00 0.00 0.00 2.66
4120 5612 5.400188 CACACACTCACATGCAATTAAACTG 59.600 40.000 0.00 0.00 0.00 3.16
4183 5675 3.027412 TGCAAAAGTCCTAAAGGTGCAA 58.973 40.909 8.36 0.00 38.64 4.08
4303 5795 0.179018 GTTGGGAGTCACCAGCTTGT 60.179 55.000 7.08 0.00 42.47 3.16
4319 5811 3.381908 AGCTTGTAGGTGAAGAGGTATCG 59.618 47.826 0.00 0.00 0.00 2.92
4320 5812 3.130693 GCTTGTAGGTGAAGAGGTATCGT 59.869 47.826 0.00 0.00 0.00 3.73
4342 5835 1.699083 TCCTGTCTGGTGAGCAATGAA 59.301 47.619 0.00 0.00 37.07 2.57
4355 5849 1.870064 CAATGAAGAAGGGGCCCAAT 58.130 50.000 27.72 13.82 0.00 3.16
4356 5850 2.190538 CAATGAAGAAGGGGCCCAATT 58.809 47.619 27.72 18.37 0.00 2.32
4378 5872 4.556697 TCTTATCAAGGGTGAGCCTATCA 58.443 43.478 2.47 0.00 37.14 2.15
4421 5915 1.555075 TCCAGGTGTAGCTGATGTTCC 59.445 52.381 12.31 0.00 0.00 3.62
4426 5920 2.237392 GGTGTAGCTGATGTTCCTCCTT 59.763 50.000 0.00 0.00 0.00 3.36
4436 5942 1.841556 TTCCTCCTTGGCACGGACT 60.842 57.895 8.90 0.00 35.26 3.85
4475 5981 0.036952 ACTCAACTGGCATCGACAGG 60.037 55.000 1.25 0.00 44.18 4.00
4481 5987 2.887568 GGCATCGACAGGCACTCG 60.888 66.667 8.18 0.00 34.60 4.18
4540 6046 1.818674 GCCACCGTCTTCATGGAAATT 59.181 47.619 0.00 0.00 35.33 1.82
4602 6108 2.048603 ATCGCCTTGCCCTTCTTGC 61.049 57.895 0.00 0.00 0.00 4.01
4638 6144 1.229984 CCCTTGGAGGAGTTCCCCT 60.230 63.158 0.00 0.00 46.19 4.79
4672 6178 5.464389 TGTTGATCTGCATCGAACATATGAG 59.536 40.000 10.38 0.51 31.04 2.90
4686 6192 5.045012 ACATATGAGCATGAGGTGAATGT 57.955 39.130 10.38 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.284034 CCTAATTGATATGGTTGCTTTCTCTGT 59.716 37.037 0.00 0.00 0.00 3.41
53 54 7.038231 GGTAGCTAGAACCCTAATTGATATGGT 60.038 40.741 0.00 0.00 34.32 3.55
67 68 4.511527 GGGTAAAGTTGGTAGCTAGAACC 58.488 47.826 10.62 7.57 37.53 3.62
118 119 4.557296 CGTTTCCACATGTGATCTTGCTTT 60.557 41.667 27.46 0.00 0.00 3.51
234 236 3.019564 GTTGCTGCTATGAAGTTCCCAT 58.980 45.455 0.00 0.00 0.00 4.00
235 237 2.436417 GTTGCTGCTATGAAGTTCCCA 58.564 47.619 0.00 0.00 0.00 4.37
280 282 0.108992 TTTCGGCTGTATCGACGCTT 60.109 50.000 0.00 0.00 36.30 4.68
319 321 4.184629 CAATCCTGCCGGCTAGATATAAC 58.815 47.826 29.70 0.00 0.00 1.89
369 371 3.730761 CCACCACGAAGCTGCTGC 61.731 66.667 1.35 7.62 40.05 5.25
370 372 0.957395 ATTCCACCACGAAGCTGCTG 60.957 55.000 1.35 0.00 0.00 4.41
407 409 3.498397 GTGGCTACATTGGATTCCGTATG 59.502 47.826 13.30 13.30 0.00 2.39
414 419 4.142182 CCAAAATCGTGGCTACATTGGATT 60.142 41.667 14.78 6.70 0.00 3.01
418 423 4.433186 TTCCAAAATCGTGGCTACATTG 57.567 40.909 0.00 0.00 38.68 2.82
448 454 2.183478 TGGCAAAATCGAGAGCAAGA 57.817 45.000 0.00 0.00 0.00 3.02
484 490 4.631813 GTCTCATTGGCTTCACGAATACTT 59.368 41.667 0.00 0.00 0.00 2.24
485 491 4.081420 AGTCTCATTGGCTTCACGAATACT 60.081 41.667 0.00 0.00 0.00 2.12
488 494 3.005554 CAGTCTCATTGGCTTCACGAAT 58.994 45.455 0.00 0.00 0.00 3.34
506 512 6.245408 AGTAGCTAGCTAAGATATGAGCAGT 58.755 40.000 25.74 1.59 41.36 4.40
527 533 9.201989 TGAGGAAGATCTATTGCTAAAAGAGTA 57.798 33.333 0.00 0.00 30.15 2.59
617 624 7.364522 TGAAACATCAAGAGTTTATTCCTCG 57.635 36.000 0.00 0.00 39.15 4.63
650 657 3.244561 CCACAGATAAGGGTGTGTCTGTT 60.245 47.826 4.28 0.00 46.59 3.16
701 708 2.363220 GCACACGCTAATTACGCATTC 58.637 47.619 7.18 0.00 34.30 2.67
706 713 0.711670 ACACGCACACGCTAATTACG 59.288 50.000 6.08 6.08 45.53 3.18
738 745 4.077184 TCCACCACCCGCACGATC 62.077 66.667 0.00 0.00 0.00 3.69
739 746 4.082523 CTCCACCACCCGCACGAT 62.083 66.667 0.00 0.00 0.00 3.73
741 748 4.619227 AACTCCACCACCCGCACG 62.619 66.667 0.00 0.00 0.00 5.34
742 749 2.386064 TACAACTCCACCACCCGCAC 62.386 60.000 0.00 0.00 0.00 5.34
743 750 1.485294 ATACAACTCCACCACCCGCA 61.485 55.000 0.00 0.00 0.00 5.69
744 751 0.538118 TATACAACTCCACCACCCGC 59.462 55.000 0.00 0.00 0.00 6.13
745 752 1.138266 CCTATACAACTCCACCACCCG 59.862 57.143 0.00 0.00 0.00 5.28
746 753 2.474112 TCCTATACAACTCCACCACCC 58.526 52.381 0.00 0.00 0.00 4.61
747 754 3.454812 ACATCCTATACAACTCCACCACC 59.545 47.826 0.00 0.00 0.00 4.61
748 755 4.755266 ACATCCTATACAACTCCACCAC 57.245 45.455 0.00 0.00 0.00 4.16
749 756 5.013704 ACAAACATCCTATACAACTCCACCA 59.986 40.000 0.00 0.00 0.00 4.17
750 757 5.497474 ACAAACATCCTATACAACTCCACC 58.503 41.667 0.00 0.00 0.00 4.61
751 758 6.092259 GTGACAAACATCCTATACAACTCCAC 59.908 42.308 0.00 0.00 0.00 4.02
752 759 6.170506 GTGACAAACATCCTATACAACTCCA 58.829 40.000 0.00 0.00 0.00 3.86
753 760 5.291128 CGTGACAAACATCCTATACAACTCC 59.709 44.000 0.00 0.00 0.00 3.85
754 761 5.220416 GCGTGACAAACATCCTATACAACTC 60.220 44.000 0.00 0.00 0.00 3.01
755 762 4.630069 GCGTGACAAACATCCTATACAACT 59.370 41.667 0.00 0.00 0.00 3.16
756 763 4.201783 GGCGTGACAAACATCCTATACAAC 60.202 45.833 0.00 0.00 0.00 3.32
757 764 3.936453 GGCGTGACAAACATCCTATACAA 59.064 43.478 0.00 0.00 0.00 2.41
758 765 3.196901 AGGCGTGACAAACATCCTATACA 59.803 43.478 0.00 0.00 34.35 2.29
759 766 3.793559 AGGCGTGACAAACATCCTATAC 58.206 45.455 0.00 0.00 34.35 1.47
760 767 4.481368 AAGGCGTGACAAACATCCTATA 57.519 40.909 0.00 0.00 34.78 1.31
761 768 3.350219 AAGGCGTGACAAACATCCTAT 57.650 42.857 0.00 0.00 34.78 2.57
762 769 2.811431 CAAAGGCGTGACAAACATCCTA 59.189 45.455 0.00 0.00 34.78 2.94
763 770 1.608590 CAAAGGCGTGACAAACATCCT 59.391 47.619 0.00 0.00 36.43 3.24
764 771 1.336755 ACAAAGGCGTGACAAACATCC 59.663 47.619 0.00 0.00 0.00 3.51
765 772 2.774439 ACAAAGGCGTGACAAACATC 57.226 45.000 0.00 0.00 0.00 3.06
766 773 3.630312 AGTTACAAAGGCGTGACAAACAT 59.370 39.130 0.00 0.00 0.00 2.71
767 774 3.011119 AGTTACAAAGGCGTGACAAACA 58.989 40.909 0.00 0.00 0.00 2.83
768 775 3.064271 TGAGTTACAAAGGCGTGACAAAC 59.936 43.478 0.00 1.09 0.00 2.93
769 776 3.271729 TGAGTTACAAAGGCGTGACAAA 58.728 40.909 0.00 0.00 0.00 2.83
770 777 2.907634 TGAGTTACAAAGGCGTGACAA 58.092 42.857 0.00 0.00 0.00 3.18
771 778 2.605837 TGAGTTACAAAGGCGTGACA 57.394 45.000 0.00 0.00 0.00 3.58
772 779 3.059800 GTCTTGAGTTACAAAGGCGTGAC 60.060 47.826 0.00 0.00 38.08 3.67
773 780 3.128349 GTCTTGAGTTACAAAGGCGTGA 58.872 45.455 0.00 0.00 38.08 4.35
774 781 3.131396 AGTCTTGAGTTACAAAGGCGTG 58.869 45.455 0.00 0.00 38.08 5.34
775 782 3.470645 AGTCTTGAGTTACAAAGGCGT 57.529 42.857 0.00 0.00 38.08 5.68
776 783 4.511826 AGAAAGTCTTGAGTTACAAAGGCG 59.488 41.667 0.00 0.00 38.08 5.52
777 784 7.522374 CATAGAAAGTCTTGAGTTACAAAGGC 58.478 38.462 0.00 0.00 38.08 4.35
778 785 7.361286 GGCATAGAAAGTCTTGAGTTACAAAGG 60.361 40.741 0.00 0.00 38.08 3.11
779 786 7.389053 AGGCATAGAAAGTCTTGAGTTACAAAG 59.611 37.037 0.00 0.00 38.08 2.77
780 787 7.224297 AGGCATAGAAAGTCTTGAGTTACAAA 58.776 34.615 0.00 0.00 38.08 2.83
781 788 6.769512 AGGCATAGAAAGTCTTGAGTTACAA 58.230 36.000 0.00 0.00 36.97 2.41
782 789 6.360370 AGGCATAGAAAGTCTTGAGTTACA 57.640 37.500 0.00 0.00 0.00 2.41
783 790 7.674471 AAAGGCATAGAAAGTCTTGAGTTAC 57.326 36.000 0.00 0.00 30.11 2.50
784 791 8.157476 AGAAAAGGCATAGAAAGTCTTGAGTTA 58.843 33.333 0.00 0.00 30.11 2.24
785 792 7.001073 AGAAAAGGCATAGAAAGTCTTGAGTT 58.999 34.615 0.00 0.00 30.11 3.01
786 793 6.538263 AGAAAAGGCATAGAAAGTCTTGAGT 58.462 36.000 0.00 0.00 30.11 3.41
787 794 7.446001 AAGAAAAGGCATAGAAAGTCTTGAG 57.554 36.000 0.00 0.00 30.11 3.02
788 795 7.823745 AAAGAAAAGGCATAGAAAGTCTTGA 57.176 32.000 0.00 0.00 30.11 3.02
789 796 8.877808 AAAAAGAAAAGGCATAGAAAGTCTTG 57.122 30.769 0.00 0.00 30.11 3.02
853 860 4.162888 ACTCTATCCCGACGGGTAATTTTT 59.837 41.667 31.54 9.97 44.74 1.94
854 861 3.708121 ACTCTATCCCGACGGGTAATTTT 59.292 43.478 31.54 11.46 44.74 1.82
855 862 3.303049 ACTCTATCCCGACGGGTAATTT 58.697 45.455 31.54 14.89 44.74 1.82
1409 1426 3.005684 TCAGCGAATCTTGCCACATTTTT 59.994 39.130 0.00 0.00 0.00 1.94
1442 1459 7.274447 AGTTTGCAAAAAGAGATCAATTTGGA 58.726 30.769 14.67 0.00 34.25 3.53
1445 1462 6.980397 ACGAGTTTGCAAAAAGAGATCAATTT 59.020 30.769 14.67 0.00 0.00 1.82
1467 1484 5.180271 ACGAAGCCAGGATTAATTTTACGA 58.820 37.500 0.00 0.00 0.00 3.43
1470 1487 8.208224 TCATCTACGAAGCCAGGATTAATTTTA 58.792 33.333 0.00 0.00 0.00 1.52
1486 1503 6.765036 ACTTCCGAAGTATAGTCATCTACGAA 59.235 38.462 12.24 0.00 40.69 3.85
1519 1536 9.070179 TCCATTATAATCACAAACTGATCCATG 57.930 33.333 0.00 0.00 38.82 3.66
1527 1544 9.295825 TCAAACTGTCCATTATAATCACAAACT 57.704 29.630 0.00 0.00 0.00 2.66
1610 1634 2.666596 AAAGGATGCTCCCGATCGGC 62.667 60.000 29.12 17.73 37.19 5.54
1644 1668 3.558931 TTCTCTCTCACAACCTGCAAA 57.441 42.857 0.00 0.00 0.00 3.68
1673 1700 6.092122 TCGCTGAAACTATTGATACCTTGTTG 59.908 38.462 0.00 0.00 0.00 3.33
1718 1745 7.615365 AGCTTTCACAACCTTATTCCATTCATA 59.385 33.333 0.00 0.00 0.00 2.15
1775 2079 0.031857 CACCACATTTTTGCCTGCGA 59.968 50.000 0.00 0.00 0.00 5.10
1907 2211 3.448660 AGCTTTTCTTGAACAAGGTTGCT 59.551 39.130 13.46 13.75 38.88 3.91
2105 2411 5.043248 CCAGAAATCCGATTTTGTAATGCC 58.957 41.667 7.78 0.00 31.47 4.40
2198 2504 1.069636 GTTGAACAAAGCTCCTCTGCG 60.070 52.381 0.00 0.00 38.13 5.18
2337 2643 1.421268 ACACAGAAGAATGTCAGGGCA 59.579 47.619 0.00 0.00 0.00 5.36
2631 2937 8.844244 GCATATGTCAGAATTCAGAGGTTAATT 58.156 33.333 8.44 0.00 0.00 1.40
2632 2938 7.994911 TGCATATGTCAGAATTCAGAGGTTAAT 59.005 33.333 8.44 0.00 0.00 1.40
2774 3080 5.765576 TTAGTTGCATCCAGTAAACCCTA 57.234 39.130 0.00 0.00 0.00 3.53
2789 3095 7.207383 ACCAACTATTCCAAAACTTTAGTTGC 58.793 34.615 13.12 0.00 44.08 4.17
2795 3101 9.758651 GTATCAAACCAACTATTCCAAAACTTT 57.241 29.630 0.00 0.00 0.00 2.66
2816 3122 7.112122 AGACAATAGAACTGCAAATGGTATCA 58.888 34.615 0.00 0.00 0.00 2.15
3040 3351 3.576550 TGCTTAGATATGCCCGTGTATGA 59.423 43.478 0.00 0.00 0.00 2.15
3302 3614 8.420374 TTGATAATAGATGTTTCGACCTGAAC 57.580 34.615 0.00 0.00 35.97 3.18
3415 3736 0.594796 GGTCCACAAAAACTGCTGCG 60.595 55.000 0.00 0.00 0.00 5.18
3429 3750 2.521126 TGTCATACTTCTGTCGGTCCA 58.479 47.619 0.00 0.00 0.00 4.02
3470 3792 5.636543 GCATCAAGGGACAAGAATTTCAAAG 59.363 40.000 0.00 0.00 0.00 2.77
3484 3806 4.346730 ACATGAGAAATTGCATCAAGGGA 58.653 39.130 0.00 0.00 0.00 4.20
3490 3812 4.860907 GTGTCCAACATGAGAAATTGCATC 59.139 41.667 0.00 0.00 0.00 3.91
3511 3833 3.364621 GCCTGCAAATATTTGTGTTCGTG 59.635 43.478 25.15 11.07 40.24 4.35
3793 4116 7.723616 TCAGAATTGTATTTCTTTCCACAAGGA 59.276 33.333 0.00 0.00 36.59 3.36
3847 4170 9.543018 GAGTACTATGTGCAGAACAAATAAAAC 57.457 33.333 0.00 0.00 43.61 2.43
3890 4213 1.139498 TGCCACTGGGGGAATTCTGA 61.139 55.000 5.23 0.00 37.04 3.27
3903 4226 1.243902 CCGTACCATTGTTTGCCACT 58.756 50.000 0.00 0.00 0.00 4.00
3975 4299 3.010420 GCCCTAGGAATCAGTGTGAAAC 58.990 50.000 11.48 0.00 37.35 2.78
3997 4321 1.172180 CCATGCAGTCCACCAAACGT 61.172 55.000 0.00 0.00 0.00 3.99
4042 4366 4.216042 CCTGTTTATCTGTGCATGTGTCAA 59.784 41.667 0.00 0.00 0.00 3.18
4043 4367 3.752747 CCTGTTTATCTGTGCATGTGTCA 59.247 43.478 0.00 0.00 0.00 3.58
4047 4371 2.794103 TGCCTGTTTATCTGTGCATGT 58.206 42.857 0.00 0.00 0.00 3.21
4050 4374 4.331108 TGTTATGCCTGTTTATCTGTGCA 58.669 39.130 0.00 0.00 0.00 4.57
4051 4375 4.963276 TGTTATGCCTGTTTATCTGTGC 57.037 40.909 0.00 0.00 0.00 4.57
4054 4378 7.068103 TGGGTTTATGTTATGCCTGTTTATCTG 59.932 37.037 0.00 0.00 0.00 2.90
4084 5574 3.002348 GTGAGTGTGTGTTTAAGACTGGC 59.998 47.826 0.00 0.00 0.00 4.85
4114 5606 8.443937 GCAATTGTTTGTTGTTTAACCAGTTTA 58.556 29.630 7.40 0.00 35.92 2.01
4115 5607 7.301789 GCAATTGTTTGTTGTTTAACCAGTTT 58.698 30.769 7.40 0.00 35.92 2.66
4116 5608 6.401581 CGCAATTGTTTGTTGTTTAACCAGTT 60.402 34.615 7.40 0.00 35.92 3.16
4117 5609 5.062809 CGCAATTGTTTGTTGTTTAACCAGT 59.937 36.000 7.40 0.00 35.92 4.00
4118 5610 5.488458 CGCAATTGTTTGTTGTTTAACCAG 58.512 37.500 7.40 0.00 35.92 4.00
4119 5611 4.330074 CCGCAATTGTTTGTTGTTTAACCA 59.670 37.500 7.40 0.00 35.92 3.67
4120 5612 4.783764 GCCGCAATTGTTTGTTGTTTAACC 60.784 41.667 7.40 0.00 35.92 2.85
4183 5675 7.611467 TGTCATGGATTGTTAGCAAGTTATCTT 59.389 33.333 0.00 0.00 38.10 2.40
4303 5795 5.163120 ACAGGATACGATACCTCTTCACCTA 60.163 44.000 0.00 0.00 46.39 3.08
4319 5811 3.118629 TCATTGCTCACCAGACAGGATAC 60.119 47.826 0.00 0.00 41.22 2.24
4320 5812 3.106827 TCATTGCTCACCAGACAGGATA 58.893 45.455 0.00 0.00 41.22 2.59
4342 5835 2.858768 TGATAAGAATTGGGCCCCTTCT 59.141 45.455 24.37 24.37 0.00 2.85
4355 5849 4.968719 TGATAGGCTCACCCTTGATAAGAA 59.031 41.667 0.00 0.00 43.06 2.52
4356 5850 4.556697 TGATAGGCTCACCCTTGATAAGA 58.443 43.478 0.00 0.00 43.06 2.10
4378 5872 3.480470 GGTGATGGTCCGAATGATCAAT 58.520 45.455 0.00 0.00 37.71 2.57
4407 5901 2.237143 CCAAGGAGGAACATCAGCTACA 59.763 50.000 0.00 0.00 41.22 2.74
4421 5915 1.669115 CACAGTCCGTGCCAAGGAG 60.669 63.158 0.00 0.00 39.19 3.69
4426 5920 2.658679 CTTGACCACAGTCCGTGCCA 62.659 60.000 0.00 0.00 44.91 4.92
4436 5942 3.199071 AGTTCACCAAGTACTTGACCACA 59.801 43.478 32.50 12.49 42.93 4.17
4481 5987 5.812043 AGGTCATCCTTGCACTCATGCTC 62.812 52.174 0.41 0.00 44.59 4.26
4529 6035 6.128661 CGAAGAACTACGACAATTTCCATGAA 60.129 38.462 0.00 0.00 0.00 2.57
4540 6046 0.524862 GAGGCCGAAGAACTACGACA 59.475 55.000 0.00 0.00 0.00 4.35
4602 6108 2.584608 CAAGGAGGTAGTGGCCGG 59.415 66.667 0.00 0.00 0.00 6.13
4638 6144 3.419943 TGCAGATCAACAATGGTGCTTA 58.580 40.909 0.00 0.00 32.61 3.09
4672 6178 2.092968 TGTCCCTACATTCACCTCATGC 60.093 50.000 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.