Multiple sequence alignment - TraesCS1B01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G102400 chr1B 100.000 2537 0 0 1 2537 112413484 112410948 0.000000e+00 4686.0
1 TraesCS1B01G102400 chr1B 95.739 704 27 3 1836 2537 637367014 637366312 0.000000e+00 1131.0
2 TraesCS1B01G102400 chr1B 81.159 138 21 4 403 538 1824078 1823944 3.450000e-19 106.0
3 TraesCS1B01G102400 chr1B 85.915 71 6 3 403 472 3149386 3149453 3.500000e-09 73.1
4 TraesCS1B01G102400 chr7B 97.159 704 17 3 1836 2537 680386358 680385656 0.000000e+00 1186.0
5 TraesCS1B01G102400 chr5B 97.021 705 18 3 1835 2537 557255419 557256122 0.000000e+00 1182.0
6 TraesCS1B01G102400 chr5B 96.165 704 22 4 1836 2537 367906733 367906033 0.000000e+00 1146.0
7 TraesCS1B01G102400 chr5B 95.745 705 27 3 1835 2537 571605637 571604934 0.000000e+00 1133.0
8 TraesCS1B01G102400 chr5B 95.739 704 27 3 1836 2537 705811763 705812465 0.000000e+00 1131.0
9 TraesCS1B01G102400 chr5B 92.553 376 21 2 1 376 686847305 686846937 1.340000e-147 532.0
10 TraesCS1B01G102400 chr5B 92.021 376 23 2 1 376 686914640 686914272 2.890000e-144 521.0
11 TraesCS1B01G102400 chr5B 87.461 319 30 7 323 638 686914260 686913949 2.400000e-95 359.0
12 TraesCS1B01G102400 chr5B 87.147 319 31 7 323 638 686846925 686846614 1.120000e-93 353.0
13 TraesCS1B01G102400 chr5B 100.000 33 0 0 1716 1748 48852720 48852752 7.580000e-06 62.1
14 TraesCS1B01G102400 chr4B 96.738 705 17 4 1835 2537 460863606 460862906 0.000000e+00 1170.0
15 TraesCS1B01G102400 chr6B 96.596 705 21 3 1836 2537 64305158 64304454 0.000000e+00 1166.0
16 TraesCS1B01G102400 chr6B 81.159 138 23 3 403 538 718594836 718594700 9.600000e-20 108.0
17 TraesCS1B01G102400 chr2B 95.887 705 27 2 1835 2537 729905886 729906590 0.000000e+00 1140.0
18 TraesCS1B01G102400 chr1D 95.282 657 25 2 1031 1681 71030422 71029766 0.000000e+00 1037.0
19 TraesCS1B01G102400 chr1D 92.784 388 15 5 661 1035 71030850 71030463 1.330000e-152 549.0
20 TraesCS1B01G102400 chr1A 91.441 666 39 8 1031 1691 71445024 71444372 0.000000e+00 898.0
21 TraesCS1B01G102400 chr1A 93.005 386 16 3 661 1035 71445447 71445062 1.030000e-153 553.0
22 TraesCS1B01G102400 chr1A 93.625 251 15 1 127 376 99728765 99728515 8.570000e-100 374.0
23 TraesCS1B01G102400 chr1A 89.231 130 7 2 4 133 99730518 99730396 3.380000e-34 156.0
24 TraesCS1B01G102400 chr1A 82.609 138 22 2 402 538 400961980 400962116 1.230000e-23 121.0
25 TraesCS1B01G102400 chr4A 85.000 380 44 4 1 367 687411930 687412309 8.570000e-100 374.0
26 TraesCS1B01G102400 chr4A 90.184 163 15 1 380 541 687412372 687412534 7.110000e-51 211.0
27 TraesCS1B01G102400 chr4A 75.934 241 50 8 401 637 687159633 687159397 1.590000e-22 117.0
28 TraesCS1B01G102400 chr4A 91.525 59 5 0 1690 1748 113577776 113577718 5.820000e-12 82.4
29 TraesCS1B01G102400 chr6D 89.076 119 13 0 1690 1808 156448013 156448131 5.650000e-32 148.0
30 TraesCS1B01G102400 chr5D 82.482 137 22 2 403 538 329774702 329774837 4.430000e-23 119.0
31 TraesCS1B01G102400 chr5D 80.714 140 25 2 403 541 242648858 242648720 9.600000e-20 108.0
32 TraesCS1B01G102400 chr5D 88.710 62 6 1 1691 1752 472747090 472747150 9.730000e-10 75.0
33 TraesCS1B01G102400 chr3B 82.394 142 20 5 403 541 40542243 40542104 4.430000e-23 119.0
34 TraesCS1B01G102400 chr2D 81.022 137 24 2 403 538 520037638 520037773 9.600000e-20 108.0
35 TraesCS1B01G102400 chr2D 93.617 47 3 0 1690 1736 42720644 42720598 1.260000e-08 71.3
36 TraesCS1B01G102400 chr2A 91.304 69 4 2 1683 1749 704784045 704783977 2.690000e-15 93.5
37 TraesCS1B01G102400 chr6A 86.765 68 9 0 1681 1748 568518076 568518143 2.710000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G102400 chr1B 112410948 112413484 2536 True 4686.0 4686 100.000 1 2537 1 chr1B.!!$R2 2536
1 TraesCS1B01G102400 chr1B 637366312 637367014 702 True 1131.0 1131 95.739 1836 2537 1 chr1B.!!$R3 701
2 TraesCS1B01G102400 chr7B 680385656 680386358 702 True 1186.0 1186 97.159 1836 2537 1 chr7B.!!$R1 701
3 TraesCS1B01G102400 chr5B 557255419 557256122 703 False 1182.0 1182 97.021 1835 2537 1 chr5B.!!$F2 702
4 TraesCS1B01G102400 chr5B 367906033 367906733 700 True 1146.0 1146 96.165 1836 2537 1 chr5B.!!$R1 701
5 TraesCS1B01G102400 chr5B 571604934 571605637 703 True 1133.0 1133 95.745 1835 2537 1 chr5B.!!$R2 702
6 TraesCS1B01G102400 chr5B 705811763 705812465 702 False 1131.0 1131 95.739 1836 2537 1 chr5B.!!$F3 701
7 TraesCS1B01G102400 chr5B 686846614 686847305 691 True 442.5 532 89.850 1 638 2 chr5B.!!$R3 637
8 TraesCS1B01G102400 chr5B 686913949 686914640 691 True 440.0 521 89.741 1 638 2 chr5B.!!$R4 637
9 TraesCS1B01G102400 chr4B 460862906 460863606 700 True 1170.0 1170 96.738 1835 2537 1 chr4B.!!$R1 702
10 TraesCS1B01G102400 chr6B 64304454 64305158 704 True 1166.0 1166 96.596 1836 2537 1 chr6B.!!$R1 701
11 TraesCS1B01G102400 chr2B 729905886 729906590 704 False 1140.0 1140 95.887 1835 2537 1 chr2B.!!$F1 702
12 TraesCS1B01G102400 chr1D 71029766 71030850 1084 True 793.0 1037 94.033 661 1681 2 chr1D.!!$R1 1020
13 TraesCS1B01G102400 chr1A 71444372 71445447 1075 True 725.5 898 92.223 661 1691 2 chr1A.!!$R1 1030
14 TraesCS1B01G102400 chr1A 99728515 99730518 2003 True 265.0 374 91.428 4 376 2 chr1A.!!$R2 372
15 TraesCS1B01G102400 chr4A 687411930 687412534 604 False 292.5 374 87.592 1 541 2 chr4A.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 2204 0.178958 AGAGTCCGGTCTCACCTGTT 60.179 55.0 27.0 5.85 35.66 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 3599 0.036671 GAGACGGACATTTCGGGGTT 60.037 55.0 0.0 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.388676 CCTCCTTCTCTAGTCGTCTCCTA 59.611 52.174 0.00 0.00 0.00 2.94
50 51 0.750182 GTCTCCTAGCTCCTCGCACT 60.750 60.000 0.00 0.00 42.61 4.40
133 1785 0.750850 AGGTGTACAACGAGTGTGCT 59.249 50.000 4.99 0.00 42.85 4.40
251 1903 2.203938 AGCCGTCCCTCCTTCCAA 60.204 61.111 0.00 0.00 0.00 3.53
374 2087 3.733344 ATCATCCCGGCGTGTTCGG 62.733 63.158 6.01 0.00 46.43 4.30
482 2196 0.626916 AGCTCCTTAGAGTCCGGTCT 59.373 55.000 0.00 0.00 42.59 3.85
490 2204 0.178958 AGAGTCCGGTCTCACCTGTT 60.179 55.000 27.00 5.85 35.66 3.16
533 2247 8.498054 ACTAAATCACCAGATCAGTGTATTTG 57.502 34.615 20.83 16.42 36.58 2.32
534 2248 8.321353 ACTAAATCACCAGATCAGTGTATTTGA 58.679 33.333 20.83 6.16 36.58 2.69
536 2250 5.482163 TCACCAGATCAGTGTATTTGACA 57.518 39.130 13.67 0.00 36.58 3.58
573 2288 6.401955 AAAACGTGGTGATTTTTCACAAAG 57.598 33.333 8.25 2.22 42.07 2.77
580 2295 5.659079 TGGTGATTTTTCACAAAGTTAGGGT 59.341 36.000 8.25 0.00 42.07 4.34
583 2298 7.229907 GGTGATTTTTCACAAAGTTAGGGTCTA 59.770 37.037 8.25 0.00 42.07 2.59
584 2299 8.290325 GTGATTTTTCACAAAGTTAGGGTCTAG 58.710 37.037 1.39 0.00 40.16 2.43
588 2303 4.485875 TCACAAAGTTAGGGTCTAGGTGA 58.514 43.478 0.00 0.00 0.00 4.02
601 2316 4.082733 GGTCTAGGTGATTTTCTGCAAACC 60.083 45.833 0.00 0.00 0.00 3.27
605 2320 3.706086 AGGTGATTTTCTGCAAACCTTGT 59.294 39.130 0.00 0.00 34.36 3.16
616 2331 4.825422 TGCAAACCTTGTTTCAAATGTGA 58.175 34.783 0.00 0.00 0.00 3.58
630 2345 4.569966 TCAAATGTGATGGTTTTGTGCAAC 59.430 37.500 0.00 0.00 33.24 4.17
638 2353 3.357203 TGGTTTTGTGCAACTAACTCCA 58.643 40.909 0.00 0.00 38.04 3.86
639 2354 3.129638 TGGTTTTGTGCAACTAACTCCAC 59.870 43.478 0.00 0.00 38.04 4.02
640 2355 3.129638 GGTTTTGTGCAACTAACTCCACA 59.870 43.478 0.00 0.00 38.04 4.17
641 2356 4.202111 GGTTTTGTGCAACTAACTCCACAT 60.202 41.667 0.00 0.00 37.94 3.21
642 2357 4.566545 TTTGTGCAACTAACTCCACATG 57.433 40.909 0.00 0.00 37.94 3.21
643 2358 3.483808 TGTGCAACTAACTCCACATGA 57.516 42.857 0.00 0.00 38.04 3.07
644 2359 3.138304 TGTGCAACTAACTCCACATGAC 58.862 45.455 0.00 0.00 38.04 3.06
645 2360 3.138304 GTGCAACTAACTCCACATGACA 58.862 45.455 0.00 0.00 0.00 3.58
646 2361 3.563808 GTGCAACTAACTCCACATGACAA 59.436 43.478 0.00 0.00 0.00 3.18
647 2362 3.814842 TGCAACTAACTCCACATGACAAG 59.185 43.478 0.00 0.00 0.00 3.16
648 2363 4.065088 GCAACTAACTCCACATGACAAGA 58.935 43.478 0.00 0.00 0.00 3.02
649 2364 4.153117 GCAACTAACTCCACATGACAAGAG 59.847 45.833 0.00 2.14 0.00 2.85
650 2365 5.541845 CAACTAACTCCACATGACAAGAGA 58.458 41.667 0.00 0.00 0.00 3.10
651 2366 5.398603 ACTAACTCCACATGACAAGAGAG 57.601 43.478 0.00 0.00 0.00 3.20
652 2367 2.758736 ACTCCACATGACAAGAGAGC 57.241 50.000 0.00 0.00 0.00 4.09
653 2368 2.255406 ACTCCACATGACAAGAGAGCT 58.745 47.619 0.00 0.00 0.00 4.09
654 2369 3.435275 ACTCCACATGACAAGAGAGCTA 58.565 45.455 0.00 0.00 0.00 3.32
655 2370 3.446873 ACTCCACATGACAAGAGAGCTAG 59.553 47.826 0.00 0.00 0.00 3.42
656 2371 3.435275 TCCACATGACAAGAGAGCTAGT 58.565 45.455 0.00 0.00 0.00 2.57
657 2372 4.600062 TCCACATGACAAGAGAGCTAGTA 58.400 43.478 0.00 0.00 0.00 1.82
658 2373 4.399618 TCCACATGACAAGAGAGCTAGTAC 59.600 45.833 0.00 0.00 0.00 2.73
659 2374 4.346970 CACATGACAAGAGAGCTAGTACG 58.653 47.826 0.00 0.00 0.00 3.67
745 2460 3.338818 TCGACCGGAATAACGATACAC 57.661 47.619 9.46 0.00 35.47 2.90
746 2461 2.682352 TCGACCGGAATAACGATACACA 59.318 45.455 9.46 0.00 35.47 3.72
747 2462 3.316029 TCGACCGGAATAACGATACACAT 59.684 43.478 9.46 0.00 35.47 3.21
748 2463 3.424198 CGACCGGAATAACGATACACATG 59.576 47.826 9.46 0.00 35.47 3.21
749 2464 3.128349 ACCGGAATAACGATACACATGC 58.872 45.455 9.46 0.00 35.47 4.06
835 2557 7.658525 TGGGATCAACATTACAAGCATTATT 57.341 32.000 0.00 0.00 0.00 1.40
879 2601 1.880271 AGCAGCTCATGATCGAATGG 58.120 50.000 0.00 0.00 0.00 3.16
910 2632 7.766278 CCTAGCTCACAACAGTGTAGAATTAAT 59.234 37.037 0.00 0.00 35.72 1.40
912 2634 7.390027 AGCTCACAACAGTGTAGAATTAATCT 58.610 34.615 0.00 0.00 35.72 2.40
913 2635 7.332926 AGCTCACAACAGTGTAGAATTAATCTG 59.667 37.037 0.00 0.00 34.20 2.90
935 2662 1.534235 AGCCCCACGAGAAGACACT 60.534 57.895 0.00 0.00 0.00 3.55
987 2714 0.693049 ACCCAACCGAGCTCAAAGAT 59.307 50.000 15.40 0.00 0.00 2.40
995 2722 2.345641 CCGAGCTCAAAGATAACACACG 59.654 50.000 15.40 0.00 0.00 4.49
1004 2731 4.521130 AAGATAACACACGCTCTTCTCA 57.479 40.909 0.00 0.00 0.00 3.27
1170 2943 2.125326 CGTCTCCAGGCCATCGGTA 61.125 63.158 5.01 0.00 0.00 4.02
1172 2945 1.043673 GTCTCCAGGCCATCGGTACT 61.044 60.000 5.01 0.00 0.00 2.73
1284 3057 2.140717 GACGACAAAGACAAACCCGAT 58.859 47.619 0.00 0.00 0.00 4.18
1314 3087 1.328680 TCGGTGTCTATCGCGTAGAAC 59.671 52.381 16.40 15.36 41.00 3.01
1323 3096 7.839837 GTGTCTATCGCGTAGAACTTTTAATTG 59.160 37.037 16.40 0.00 41.00 2.32
1335 3108 7.136772 AGAACTTTTAATTGTAAGTTGGCGAC 58.863 34.615 18.68 0.00 42.82 5.19
1387 3163 6.255887 GTGTAGCGTATAATAATGCATCCTCC 59.744 42.308 0.00 0.00 33.64 4.30
1537 3316 6.262273 AGGATGAAAGCTTCTTTTAAACGTGA 59.738 34.615 0.00 0.00 0.00 4.35
1557 3336 5.178252 CGTGAATTCACTGAAATGTCTCACT 59.822 40.000 30.45 0.00 44.34 3.41
1560 3339 6.426025 TGAATTCACTGAAATGTCTCACTCAG 59.574 38.462 3.38 8.29 40.92 3.35
1605 3384 6.350629 ACTCCTAAAATGCAGAATTTTGCT 57.649 33.333 20.35 4.34 45.89 3.91
1643 3427 1.076841 TCATGGTTGAGGGCATCCAAA 59.923 47.619 0.00 0.00 44.66 3.28
1655 3439 3.401182 GGCATCCAAAAATTCTGCAACA 58.599 40.909 0.00 0.00 34.56 3.33
1691 3475 0.742990 CGATGCTCCCGCTTAAACCA 60.743 55.000 0.00 0.00 36.97 3.67
1692 3476 1.459450 GATGCTCCCGCTTAAACCAA 58.541 50.000 0.00 0.00 36.97 3.67
1693 3477 1.132453 GATGCTCCCGCTTAAACCAAC 59.868 52.381 0.00 0.00 36.97 3.77
1694 3478 0.109723 TGCTCCCGCTTAAACCAACT 59.890 50.000 0.00 0.00 36.97 3.16
1695 3479 0.803117 GCTCCCGCTTAAACCAACTC 59.197 55.000 0.00 0.00 0.00 3.01
1696 3480 1.450025 CTCCCGCTTAAACCAACTCC 58.550 55.000 0.00 0.00 0.00 3.85
1697 3481 0.766131 TCCCGCTTAAACCAACTCCA 59.234 50.000 0.00 0.00 0.00 3.86
1698 3482 0.879090 CCCGCTTAAACCAACTCCAC 59.121 55.000 0.00 0.00 0.00 4.02
1699 3483 0.879090 CCGCTTAAACCAACTCCACC 59.121 55.000 0.00 0.00 0.00 4.61
1700 3484 0.515564 CGCTTAAACCAACTCCACCG 59.484 55.000 0.00 0.00 0.00 4.94
1701 3485 0.240145 GCTTAAACCAACTCCACCGC 59.760 55.000 0.00 0.00 0.00 5.68
1702 3486 1.600023 CTTAAACCAACTCCACCGCA 58.400 50.000 0.00 0.00 0.00 5.69
1703 3487 1.265905 CTTAAACCAACTCCACCGCAC 59.734 52.381 0.00 0.00 0.00 5.34
1704 3488 0.881159 TAAACCAACTCCACCGCACG 60.881 55.000 0.00 0.00 0.00 5.34
1705 3489 2.596553 AAACCAACTCCACCGCACGA 62.597 55.000 0.00 0.00 0.00 4.35
1706 3490 2.047274 CCAACTCCACCGCACGAT 60.047 61.111 0.00 0.00 0.00 3.73
1707 3491 2.100631 CCAACTCCACCGCACGATC 61.101 63.158 0.00 0.00 0.00 3.69
1708 3492 2.100631 CAACTCCACCGCACGATCC 61.101 63.158 0.00 0.00 0.00 3.36
1709 3493 3.310860 AACTCCACCGCACGATCCC 62.311 63.158 0.00 0.00 0.00 3.85
1710 3494 3.770040 CTCCACCGCACGATCCCA 61.770 66.667 0.00 0.00 0.00 4.37
1711 3495 3.309436 CTCCACCGCACGATCCCAA 62.309 63.158 0.00 0.00 0.00 4.12
1712 3496 2.359354 CCACCGCACGATCCCAAA 60.359 61.111 0.00 0.00 0.00 3.28
1713 3497 2.686816 CCACCGCACGATCCCAAAC 61.687 63.158 0.00 0.00 0.00 2.93
1714 3498 1.963855 CACCGCACGATCCCAAACA 60.964 57.895 0.00 0.00 0.00 2.83
1715 3499 1.671054 ACCGCACGATCCCAAACAG 60.671 57.895 0.00 0.00 0.00 3.16
1716 3500 1.375396 CCGCACGATCCCAAACAGA 60.375 57.895 0.00 0.00 0.00 3.41
1717 3501 1.635663 CCGCACGATCCCAAACAGAC 61.636 60.000 0.00 0.00 0.00 3.51
1718 3502 1.787847 GCACGATCCCAAACAGACG 59.212 57.895 0.00 0.00 0.00 4.18
1719 3503 0.949105 GCACGATCCCAAACAGACGT 60.949 55.000 0.00 0.00 34.40 4.34
1720 3504 1.068474 CACGATCCCAAACAGACGTC 58.932 55.000 7.70 7.70 31.82 4.34
1721 3505 0.966920 ACGATCCCAAACAGACGTCT 59.033 50.000 13.58 13.58 0.00 4.18
1732 3516 2.645628 CAGACGTCTGTTTTGTTCGG 57.354 50.000 32.77 7.56 39.09 4.30
1733 3517 2.198406 CAGACGTCTGTTTTGTTCGGA 58.802 47.619 32.77 0.00 39.09 4.55
1734 3518 2.800544 CAGACGTCTGTTTTGTTCGGAT 59.199 45.455 32.77 0.00 39.09 4.18
1735 3519 3.247648 CAGACGTCTGTTTTGTTCGGATT 59.752 43.478 32.77 0.00 39.09 3.01
1736 3520 3.493503 AGACGTCTGTTTTGTTCGGATTC 59.506 43.478 19.30 0.00 0.00 2.52
1737 3521 3.463944 ACGTCTGTTTTGTTCGGATTCT 58.536 40.909 0.00 0.00 0.00 2.40
1738 3522 3.247648 ACGTCTGTTTTGTTCGGATTCTG 59.752 43.478 0.00 0.00 0.00 3.02
1739 3523 3.247648 CGTCTGTTTTGTTCGGATTCTGT 59.752 43.478 0.00 0.00 0.00 3.41
1740 3524 4.608445 CGTCTGTTTTGTTCGGATTCTGTC 60.608 45.833 0.00 0.00 0.00 3.51
1741 3525 3.813166 TCTGTTTTGTTCGGATTCTGTCC 59.187 43.478 0.00 0.00 44.10 4.02
1750 3534 1.892209 GGATTCTGTCCGTTTGGTGT 58.108 50.000 0.00 0.00 37.23 4.16
1751 3535 1.535462 GGATTCTGTCCGTTTGGTGTG 59.465 52.381 0.00 0.00 37.23 3.82
1752 3536 2.489971 GATTCTGTCCGTTTGGTGTGA 58.510 47.619 0.00 0.00 36.30 3.58
1753 3537 2.631160 TTCTGTCCGTTTGGTGTGAT 57.369 45.000 0.00 0.00 36.30 3.06
1754 3538 3.755112 TTCTGTCCGTTTGGTGTGATA 57.245 42.857 0.00 0.00 36.30 2.15
1755 3539 3.755112 TCTGTCCGTTTGGTGTGATAA 57.245 42.857 0.00 0.00 36.30 1.75
1756 3540 4.280436 TCTGTCCGTTTGGTGTGATAAT 57.720 40.909 0.00 0.00 36.30 1.28
1757 3541 4.000325 TCTGTCCGTTTGGTGTGATAATG 59.000 43.478 0.00 0.00 36.30 1.90
1758 3542 4.000325 CTGTCCGTTTGGTGTGATAATGA 59.000 43.478 0.00 0.00 36.30 2.57
1759 3543 4.000325 TGTCCGTTTGGTGTGATAATGAG 59.000 43.478 0.00 0.00 36.30 2.90
1760 3544 4.000988 GTCCGTTTGGTGTGATAATGAGT 58.999 43.478 0.00 0.00 36.30 3.41
1761 3545 4.000325 TCCGTTTGGTGTGATAATGAGTG 59.000 43.478 0.00 0.00 36.30 3.51
1762 3546 3.126858 CCGTTTGGTGTGATAATGAGTGG 59.873 47.826 0.00 0.00 0.00 4.00
1763 3547 3.426159 CGTTTGGTGTGATAATGAGTGGC 60.426 47.826 0.00 0.00 0.00 5.01
1764 3548 3.431673 TTGGTGTGATAATGAGTGGCA 57.568 42.857 0.00 0.00 0.00 4.92
1765 3549 3.431673 TGGTGTGATAATGAGTGGCAA 57.568 42.857 0.00 0.00 0.00 4.52
1766 3550 3.760738 TGGTGTGATAATGAGTGGCAAA 58.239 40.909 0.00 0.00 0.00 3.68
1767 3551 4.148079 TGGTGTGATAATGAGTGGCAAAA 58.852 39.130 0.00 0.00 0.00 2.44
1768 3552 4.022416 TGGTGTGATAATGAGTGGCAAAAC 60.022 41.667 0.00 0.00 0.00 2.43
1769 3553 4.158384 GTGTGATAATGAGTGGCAAAACG 58.842 43.478 0.00 0.00 0.00 3.60
1770 3554 3.190327 TGTGATAATGAGTGGCAAAACGG 59.810 43.478 0.00 0.00 0.00 4.44
1771 3555 3.438781 GTGATAATGAGTGGCAAAACGGA 59.561 43.478 0.00 0.00 0.00 4.69
1772 3556 3.438781 TGATAATGAGTGGCAAAACGGAC 59.561 43.478 0.00 0.00 0.00 4.79
1773 3557 1.686355 AATGAGTGGCAAAACGGACA 58.314 45.000 0.00 0.00 0.00 4.02
1774 3558 1.909700 ATGAGTGGCAAAACGGACAT 58.090 45.000 0.00 0.00 0.00 3.06
1775 3559 0.950836 TGAGTGGCAAAACGGACATG 59.049 50.000 0.00 0.00 0.00 3.21
1776 3560 0.387239 GAGTGGCAAAACGGACATGC 60.387 55.000 0.00 0.00 39.33 4.06
1777 3561 1.106351 AGTGGCAAAACGGACATGCA 61.106 50.000 0.00 0.00 41.80 3.96
1778 3562 0.939106 GTGGCAAAACGGACATGCAC 60.939 55.000 0.00 0.00 41.80 4.57
1779 3563 1.729131 GGCAAAACGGACATGCACG 60.729 57.895 7.94 7.94 41.80 5.34
1780 3564 1.008995 GCAAAACGGACATGCACGT 60.009 52.632 9.20 9.20 46.48 4.49
1781 3565 0.996727 GCAAAACGGACATGCACGTC 60.997 55.000 14.50 3.86 43.31 4.34
1786 3570 4.388499 GGACATGCACGTCCGGGT 62.388 66.667 17.32 0.00 45.77 5.28
1787 3571 2.574929 GACATGCACGTCCGGGTA 59.425 61.111 0.29 0.00 0.00 3.69
1788 3572 1.518572 GACATGCACGTCCGGGTAG 60.519 63.158 0.29 0.00 0.00 3.18
1789 3573 1.940883 GACATGCACGTCCGGGTAGA 61.941 60.000 0.29 0.00 0.00 2.59
1790 3574 1.226974 CATGCACGTCCGGGTAGAG 60.227 63.158 0.00 0.00 0.00 2.43
1791 3575 1.681327 ATGCACGTCCGGGTAGAGT 60.681 57.895 0.00 0.00 0.00 3.24
1792 3576 1.255667 ATGCACGTCCGGGTAGAGTT 61.256 55.000 0.00 0.00 0.00 3.01
1793 3577 1.445582 GCACGTCCGGGTAGAGTTG 60.446 63.158 0.00 0.00 0.00 3.16
1794 3578 1.214589 CACGTCCGGGTAGAGTTGG 59.785 63.158 0.00 0.00 0.00 3.77
1795 3579 1.075482 ACGTCCGGGTAGAGTTGGA 59.925 57.895 0.00 0.00 0.00 3.53
1796 3580 0.964358 ACGTCCGGGTAGAGTTGGAG 60.964 60.000 0.00 0.00 0.00 3.86
1797 3581 1.664321 CGTCCGGGTAGAGTTGGAGG 61.664 65.000 0.00 0.00 0.00 4.30
1798 3582 1.684734 TCCGGGTAGAGTTGGAGGC 60.685 63.158 0.00 0.00 0.00 4.70
1799 3583 1.987855 CCGGGTAGAGTTGGAGGCA 60.988 63.158 0.00 0.00 0.00 4.75
1800 3584 1.218316 CGGGTAGAGTTGGAGGCAC 59.782 63.158 0.00 0.00 0.00 5.01
1801 3585 1.602771 GGGTAGAGTTGGAGGCACC 59.397 63.158 0.00 0.00 39.54 5.01
1802 3586 1.602771 GGTAGAGTTGGAGGCACCC 59.397 63.158 0.00 0.00 38.00 4.61
1803 3587 1.198759 GGTAGAGTTGGAGGCACCCA 61.199 60.000 0.00 0.00 38.00 4.51
1804 3588 0.690762 GTAGAGTTGGAGGCACCCAA 59.309 55.000 7.20 7.20 43.42 4.12
1808 3592 4.196778 TTGGAGGCACCCAACGCA 62.197 61.111 7.20 0.00 40.99 5.24
1809 3593 4.947147 TGGAGGCACCCAACGCAC 62.947 66.667 0.00 0.00 38.00 5.34
1811 3595 4.947147 GAGGCACCCAACGCACCA 62.947 66.667 0.00 0.00 0.00 4.17
1812 3596 4.514585 AGGCACCCAACGCACCAA 62.515 61.111 0.00 0.00 0.00 3.67
1813 3597 3.302344 GGCACCCAACGCACCAAT 61.302 61.111 0.00 0.00 0.00 3.16
1814 3598 2.258286 GCACCCAACGCACCAATC 59.742 61.111 0.00 0.00 0.00 2.67
1815 3599 2.560119 GCACCCAACGCACCAATCA 61.560 57.895 0.00 0.00 0.00 2.57
1816 3600 2.037053 CACCCAACGCACCAATCAA 58.963 52.632 0.00 0.00 0.00 2.57
1817 3601 0.318614 CACCCAACGCACCAATCAAC 60.319 55.000 0.00 0.00 0.00 3.18
1818 3602 1.288752 CCCAACGCACCAATCAACC 59.711 57.895 0.00 0.00 0.00 3.77
1819 3603 1.288752 CCAACGCACCAATCAACCC 59.711 57.895 0.00 0.00 0.00 4.11
1820 3604 1.288752 CAACGCACCAATCAACCCC 59.711 57.895 0.00 0.00 0.00 4.95
1821 3605 2.265182 AACGCACCAATCAACCCCG 61.265 57.895 0.00 0.00 0.00 5.73
1822 3606 2.359354 CGCACCAATCAACCCCGA 60.359 61.111 0.00 0.00 0.00 5.14
1823 3607 1.969064 CGCACCAATCAACCCCGAA 60.969 57.895 0.00 0.00 0.00 4.30
1824 3608 1.519751 CGCACCAATCAACCCCGAAA 61.520 55.000 0.00 0.00 0.00 3.46
1825 3609 0.894835 GCACCAATCAACCCCGAAAT 59.105 50.000 0.00 0.00 0.00 2.17
1826 3610 1.404047 GCACCAATCAACCCCGAAATG 60.404 52.381 0.00 0.00 0.00 2.32
1827 3611 1.892474 CACCAATCAACCCCGAAATGT 59.108 47.619 0.00 0.00 0.00 2.71
1828 3612 2.094752 CACCAATCAACCCCGAAATGTC 60.095 50.000 0.00 0.00 0.00 3.06
1829 3613 1.476488 CCAATCAACCCCGAAATGTCC 59.524 52.381 0.00 0.00 0.00 4.02
1830 3614 1.132262 CAATCAACCCCGAAATGTCCG 59.868 52.381 0.00 0.00 0.00 4.79
1831 3615 0.326927 ATCAACCCCGAAATGTCCGT 59.673 50.000 0.00 0.00 0.00 4.69
1832 3616 0.320946 TCAACCCCGAAATGTCCGTC 60.321 55.000 0.00 0.00 0.00 4.79
1833 3617 0.321298 CAACCCCGAAATGTCCGTCT 60.321 55.000 0.00 0.00 0.00 4.18
1844 3628 1.746517 GTCCGTCTCGGGCCAATAT 59.253 57.895 4.39 0.00 46.90 1.28
2018 3803 1.618876 TTATGACACGCGGGACCCAT 61.619 55.000 19.19 17.43 0.00 4.00
2256 4041 2.401351 GTCCACTACCGTTGACAAGAC 58.599 52.381 0.00 0.00 36.21 3.01
2267 4052 1.375523 GACAAGACGCCCCGATTGT 60.376 57.895 10.80 10.80 40.53 2.71
2378 4164 1.119574 GCCGGGGCAGGTTAGATCTA 61.120 60.000 2.18 0.00 41.49 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.136110 GACTAGAGAAGGAGGCAGTGC 59.864 57.143 6.55 6.55 0.00 4.40
251 1903 3.017581 GTGGGCAGGGATGGAGGT 61.018 66.667 0.00 0.00 0.00 3.85
357 2009 4.444838 CCGAACACGCCGGGATGA 62.445 66.667 2.18 0.00 43.05 2.92
370 2083 1.438651 CAAGGAGCGAATTGACCGAA 58.561 50.000 0.00 0.00 0.00 4.30
456 2170 3.093057 GGACTCTAAGGAGCTGACTTGA 58.907 50.000 9.85 5.55 42.98 3.02
482 2196 9.527157 TCCATTTAATCATTTTCTAACAGGTGA 57.473 29.630 0.00 0.00 0.00 4.02
550 2264 5.929415 ACTTTGTGAAAAATCACCACGTTTT 59.071 32.000 6.51 0.00 39.72 2.43
556 2270 5.659079 ACCCTAACTTTGTGAAAAATCACCA 59.341 36.000 6.51 0.00 39.72 4.17
573 2288 4.876679 GCAGAAAATCACCTAGACCCTAAC 59.123 45.833 0.00 0.00 0.00 2.34
580 2295 4.985538 AGGTTTGCAGAAAATCACCTAGA 58.014 39.130 0.00 0.00 30.61 2.43
583 2298 3.706086 ACAAGGTTTGCAGAAAATCACCT 59.294 39.130 0.00 0.00 30.61 4.00
584 2299 4.058721 ACAAGGTTTGCAGAAAATCACC 57.941 40.909 0.00 0.00 30.61 4.02
588 2303 7.121020 ACATTTGAAACAAGGTTTGCAGAAAAT 59.879 29.630 0.00 0.00 0.00 1.82
601 2316 7.181418 CACAAAACCATCACATTTGAAACAAG 58.819 34.615 4.65 0.00 37.46 3.16
605 2320 5.181009 TGCACAAAACCATCACATTTGAAA 58.819 33.333 4.65 0.00 37.46 2.69
616 2331 3.957497 TGGAGTTAGTTGCACAAAACCAT 59.043 39.130 0.00 0.00 0.00 3.55
630 2345 4.081752 AGCTCTCTTGTCATGTGGAGTTAG 60.082 45.833 0.00 0.00 0.00 2.34
638 2353 3.181495 GCGTACTAGCTCTCTTGTCATGT 60.181 47.826 0.00 0.00 31.09 3.21
639 2354 3.181496 TGCGTACTAGCTCTCTTGTCATG 60.181 47.826 0.00 0.00 38.13 3.07
640 2355 3.017442 TGCGTACTAGCTCTCTTGTCAT 58.983 45.455 0.00 0.00 38.13 3.06
641 2356 2.433436 TGCGTACTAGCTCTCTTGTCA 58.567 47.619 0.00 0.00 38.13 3.58
642 2357 3.065510 TCATGCGTACTAGCTCTCTTGTC 59.934 47.826 0.00 0.00 38.13 3.18
643 2358 3.017442 TCATGCGTACTAGCTCTCTTGT 58.983 45.455 0.00 0.00 38.13 3.16
644 2359 3.181496 TGTCATGCGTACTAGCTCTCTTG 60.181 47.826 0.00 0.00 38.13 3.02
645 2360 3.017442 TGTCATGCGTACTAGCTCTCTT 58.983 45.455 0.00 0.00 38.13 2.85
646 2361 2.644676 TGTCATGCGTACTAGCTCTCT 58.355 47.619 0.00 0.00 38.13 3.10
647 2362 3.065510 TCTTGTCATGCGTACTAGCTCTC 59.934 47.826 0.00 0.00 38.13 3.20
648 2363 3.017442 TCTTGTCATGCGTACTAGCTCT 58.983 45.455 0.00 0.00 38.13 4.09
649 2364 3.065510 TCTCTTGTCATGCGTACTAGCTC 59.934 47.826 0.00 0.00 38.13 4.09
650 2365 3.017442 TCTCTTGTCATGCGTACTAGCT 58.983 45.455 0.00 0.00 38.13 3.32
651 2366 3.367607 CTCTCTTGTCATGCGTACTAGC 58.632 50.000 0.00 0.00 37.71 3.42
652 2367 3.066064 AGCTCTCTTGTCATGCGTACTAG 59.934 47.826 0.00 0.00 0.00 2.57
653 2368 3.017442 AGCTCTCTTGTCATGCGTACTA 58.983 45.455 0.00 0.00 0.00 1.82
654 2369 1.821753 AGCTCTCTTGTCATGCGTACT 59.178 47.619 0.00 0.00 0.00 2.73
655 2370 2.285827 AGCTCTCTTGTCATGCGTAC 57.714 50.000 0.00 0.00 0.00 3.67
656 2371 2.223595 GCTAGCTCTCTTGTCATGCGTA 60.224 50.000 7.70 0.00 0.00 4.42
657 2372 1.470632 GCTAGCTCTCTTGTCATGCGT 60.471 52.381 7.70 0.00 0.00 5.24
658 2373 1.202394 AGCTAGCTCTCTTGTCATGCG 60.202 52.381 12.68 0.00 0.00 4.73
659 2374 2.600470 AGCTAGCTCTCTTGTCATGC 57.400 50.000 12.68 0.00 0.00 4.06
735 2450 1.407618 AGCCTCGCATGTGTATCGTTA 59.592 47.619 6.09 0.00 0.00 3.18
745 2460 0.382158 TCTTCGTAGAGCCTCGCATG 59.618 55.000 0.00 0.00 38.43 4.06
746 2461 1.000827 CATCTTCGTAGAGCCTCGCAT 60.001 52.381 0.00 0.00 38.43 4.73
747 2462 0.382158 CATCTTCGTAGAGCCTCGCA 59.618 55.000 0.00 0.00 38.43 5.10
748 2463 0.937231 GCATCTTCGTAGAGCCTCGC 60.937 60.000 0.00 0.00 38.43 5.03
749 2464 0.318275 GGCATCTTCGTAGAGCCTCG 60.318 60.000 18.51 0.00 39.55 4.63
835 2557 9.859427 CTTTAATTTGGATAGAAAAGCATGTCA 57.141 29.630 0.00 0.00 0.00 3.58
879 2601 1.160137 CTGTTGTGAGCTAGGGCAAC 58.840 55.000 12.39 12.39 41.70 4.17
910 2632 3.385384 CTCGTGGGGCTCTGCAGA 61.385 66.667 17.19 17.19 0.00 4.26
912 2634 2.922503 TTCTCGTGGGGCTCTGCA 60.923 61.111 0.00 0.00 0.00 4.41
913 2635 2.125350 CTTCTCGTGGGGCTCTGC 60.125 66.667 0.00 0.00 0.00 4.26
987 2714 2.288213 CCAGTGAGAAGAGCGTGTGTTA 60.288 50.000 0.00 0.00 0.00 2.41
1004 2731 5.181622 GGATTAACGTAGATCGATCTCCAGT 59.818 44.000 30.49 23.48 42.86 4.00
1086 2859 1.141019 GTCGACGGGCAGCTCATTA 59.859 57.895 0.00 0.00 0.00 1.90
1143 2916 1.374758 CCTGGAGACGAGGTTGTGC 60.375 63.158 0.00 0.00 0.00 4.57
1284 3057 2.502142 TAGACACCGAGAGTAAGCCA 57.498 50.000 0.00 0.00 0.00 4.75
1314 3087 5.342259 GCAGTCGCCAACTTACAATTAAAAG 59.658 40.000 0.00 0.00 35.45 2.27
1323 3096 3.946907 ACGCAGTCGCCAACTTAC 58.053 55.556 0.00 0.00 29.74 2.34
1335 3108 2.287009 TGTCGCTCATAGTATGACGCAG 60.287 50.000 22.94 17.96 34.95 5.18
1387 3163 0.112218 TGGTGTGGATGTTTCCCTGG 59.888 55.000 0.00 0.00 41.83 4.45
1499 3278 9.561069 GAAGCTTTCATCCTGAGGTATAATTAA 57.439 33.333 0.00 0.00 0.00 1.40
1537 3316 6.528321 TCTGAGTGAGACATTTCAGTGAATT 58.472 36.000 6.36 0.00 38.50 2.17
1560 3339 9.750882 GGAGTACAATATTTGAGTTACGTTTTC 57.249 33.333 0.00 0.00 0.00 2.29
1605 3384 4.556233 CATGAAAGACCTCGACAACAGTA 58.444 43.478 0.00 0.00 0.00 2.74
1681 3465 0.515564 CGGTGGAGTTGGTTTAAGCG 59.484 55.000 0.00 0.00 0.00 4.68
1688 3472 2.781595 GATCGTGCGGTGGAGTTGGT 62.782 60.000 0.00 0.00 0.00 3.67
1691 3475 2.264794 GGATCGTGCGGTGGAGTT 59.735 61.111 0.00 0.00 0.00 3.01
1692 3476 3.771160 GGGATCGTGCGGTGGAGT 61.771 66.667 0.00 0.00 0.00 3.85
1693 3477 2.796483 TTTGGGATCGTGCGGTGGAG 62.796 60.000 0.00 0.00 0.00 3.86
1694 3478 2.884980 TTTGGGATCGTGCGGTGGA 61.885 57.895 0.00 0.00 0.00 4.02
1695 3479 2.359354 TTTGGGATCGTGCGGTGG 60.359 61.111 0.00 0.00 0.00 4.61
1696 3480 1.911293 CTGTTTGGGATCGTGCGGTG 61.911 60.000 0.00 0.00 0.00 4.94
1697 3481 1.671054 CTGTTTGGGATCGTGCGGT 60.671 57.895 0.00 0.00 0.00 5.68
1698 3482 1.375396 TCTGTTTGGGATCGTGCGG 60.375 57.895 0.00 0.00 0.00 5.69
1699 3483 1.787847 GTCTGTTTGGGATCGTGCG 59.212 57.895 0.00 0.00 0.00 5.34
1700 3484 0.949105 ACGTCTGTTTGGGATCGTGC 60.949 55.000 0.00 0.00 0.00 5.34
1701 3485 1.068474 GACGTCTGTTTGGGATCGTG 58.932 55.000 8.70 0.00 0.00 4.35
1702 3486 0.966920 AGACGTCTGTTTGGGATCGT 59.033 50.000 19.30 0.00 0.00 3.73
1703 3487 1.350193 CAGACGTCTGTTTGGGATCG 58.650 55.000 32.77 7.56 39.09 3.69
1714 3498 2.589798 TCCGAACAAAACAGACGTCT 57.410 45.000 13.58 13.58 0.00 4.18
1715 3499 3.493503 AGAATCCGAACAAAACAGACGTC 59.506 43.478 7.70 7.70 0.00 4.34
1716 3500 3.247648 CAGAATCCGAACAAAACAGACGT 59.752 43.478 0.00 0.00 0.00 4.34
1717 3501 3.247648 ACAGAATCCGAACAAAACAGACG 59.752 43.478 0.00 0.00 0.00 4.18
1718 3502 4.319549 GGACAGAATCCGAACAAAACAGAC 60.320 45.833 0.00 0.00 37.88 3.51
1719 3503 3.813166 GGACAGAATCCGAACAAAACAGA 59.187 43.478 0.00 0.00 37.88 3.41
1720 3504 4.147219 GGACAGAATCCGAACAAAACAG 57.853 45.455 0.00 0.00 37.88 3.16
1731 3515 1.535462 CACACCAAACGGACAGAATCC 59.465 52.381 0.00 0.00 45.20 3.01
1732 3516 2.489971 TCACACCAAACGGACAGAATC 58.510 47.619 0.00 0.00 0.00 2.52
1733 3517 2.631160 TCACACCAAACGGACAGAAT 57.369 45.000 0.00 0.00 0.00 2.40
1734 3518 2.631160 ATCACACCAAACGGACAGAA 57.369 45.000 0.00 0.00 0.00 3.02
1735 3519 3.755112 TTATCACACCAAACGGACAGA 57.245 42.857 0.00 0.00 0.00 3.41
1736 3520 4.000325 TCATTATCACACCAAACGGACAG 59.000 43.478 0.00 0.00 0.00 3.51
1737 3521 4.000325 CTCATTATCACACCAAACGGACA 59.000 43.478 0.00 0.00 0.00 4.02
1738 3522 4.000988 ACTCATTATCACACCAAACGGAC 58.999 43.478 0.00 0.00 0.00 4.79
1739 3523 4.000325 CACTCATTATCACACCAAACGGA 59.000 43.478 0.00 0.00 0.00 4.69
1740 3524 3.126858 CCACTCATTATCACACCAAACGG 59.873 47.826 0.00 0.00 0.00 4.44
1741 3525 3.426159 GCCACTCATTATCACACCAAACG 60.426 47.826 0.00 0.00 0.00 3.60
1742 3526 3.505680 TGCCACTCATTATCACACCAAAC 59.494 43.478 0.00 0.00 0.00 2.93
1743 3527 3.760738 TGCCACTCATTATCACACCAAA 58.239 40.909 0.00 0.00 0.00 3.28
1744 3528 3.431673 TGCCACTCATTATCACACCAA 57.568 42.857 0.00 0.00 0.00 3.67
1745 3529 3.431673 TTGCCACTCATTATCACACCA 57.568 42.857 0.00 0.00 0.00 4.17
1746 3530 4.485163 GTTTTGCCACTCATTATCACACC 58.515 43.478 0.00 0.00 0.00 4.16
1747 3531 4.158384 CGTTTTGCCACTCATTATCACAC 58.842 43.478 0.00 0.00 0.00 3.82
1748 3532 3.190327 CCGTTTTGCCACTCATTATCACA 59.810 43.478 0.00 0.00 0.00 3.58
1749 3533 3.438781 TCCGTTTTGCCACTCATTATCAC 59.561 43.478 0.00 0.00 0.00 3.06
1750 3534 3.438781 GTCCGTTTTGCCACTCATTATCA 59.561 43.478 0.00 0.00 0.00 2.15
1751 3535 3.438781 TGTCCGTTTTGCCACTCATTATC 59.561 43.478 0.00 0.00 0.00 1.75
1752 3536 3.417101 TGTCCGTTTTGCCACTCATTAT 58.583 40.909 0.00 0.00 0.00 1.28
1753 3537 2.852449 TGTCCGTTTTGCCACTCATTA 58.148 42.857 0.00 0.00 0.00 1.90
1754 3538 1.686355 TGTCCGTTTTGCCACTCATT 58.314 45.000 0.00 0.00 0.00 2.57
1755 3539 1.541147 CATGTCCGTTTTGCCACTCAT 59.459 47.619 0.00 0.00 0.00 2.90
1756 3540 0.950836 CATGTCCGTTTTGCCACTCA 59.049 50.000 0.00 0.00 0.00 3.41
1757 3541 0.387239 GCATGTCCGTTTTGCCACTC 60.387 55.000 0.00 0.00 0.00 3.51
1758 3542 1.106351 TGCATGTCCGTTTTGCCACT 61.106 50.000 0.00 0.00 35.51 4.00
1759 3543 0.939106 GTGCATGTCCGTTTTGCCAC 60.939 55.000 0.00 0.00 35.51 5.01
1760 3544 1.361993 GTGCATGTCCGTTTTGCCA 59.638 52.632 0.00 0.00 35.51 4.92
1761 3545 1.729131 CGTGCATGTCCGTTTTGCC 60.729 57.895 0.00 0.00 35.51 4.52
1762 3546 0.996727 GACGTGCATGTCCGTTTTGC 60.997 55.000 25.72 1.12 37.44 3.68
1763 3547 3.071495 GACGTGCATGTCCGTTTTG 57.929 52.632 25.72 0.00 37.44 2.44
1770 3554 1.518572 CTACCCGGACGTGCATGTC 60.519 63.158 27.61 27.61 38.17 3.06
1771 3555 1.945354 CTCTACCCGGACGTGCATGT 61.945 60.000 12.38 12.38 0.00 3.21
1772 3556 1.226974 CTCTACCCGGACGTGCATG 60.227 63.158 0.73 3.82 0.00 4.06
1773 3557 1.255667 AACTCTACCCGGACGTGCAT 61.256 55.000 0.73 0.00 0.00 3.96
1774 3558 1.904865 AACTCTACCCGGACGTGCA 60.905 57.895 0.73 0.00 0.00 4.57
1775 3559 1.445582 CAACTCTACCCGGACGTGC 60.446 63.158 0.73 0.00 0.00 5.34
1776 3560 1.214589 CCAACTCTACCCGGACGTG 59.785 63.158 0.73 0.00 0.00 4.49
1777 3561 0.964358 CTCCAACTCTACCCGGACGT 60.964 60.000 0.73 0.00 0.00 4.34
1778 3562 1.664321 CCTCCAACTCTACCCGGACG 61.664 65.000 0.73 0.00 0.00 4.79
1779 3563 1.957765 GCCTCCAACTCTACCCGGAC 61.958 65.000 0.73 0.00 0.00 4.79
1780 3564 1.684734 GCCTCCAACTCTACCCGGA 60.685 63.158 0.73 0.00 0.00 5.14
1781 3565 1.987855 TGCCTCCAACTCTACCCGG 60.988 63.158 0.00 0.00 0.00 5.73
1782 3566 1.218316 GTGCCTCCAACTCTACCCG 59.782 63.158 0.00 0.00 0.00 5.28
1783 3567 1.602771 GGTGCCTCCAACTCTACCC 59.397 63.158 0.00 0.00 35.97 3.69
1784 3568 1.198759 TGGGTGCCTCCAACTCTACC 61.199 60.000 0.00 0.00 38.11 3.18
1785 3569 0.690762 TTGGGTGCCTCCAACTCTAC 59.309 55.000 4.01 0.00 41.44 2.59
1786 3570 3.173852 TTGGGTGCCTCCAACTCTA 57.826 52.632 4.01 0.00 41.44 2.43
1787 3571 4.002006 TTGGGTGCCTCCAACTCT 57.998 55.556 4.01 0.00 41.44 3.24
1791 3575 4.196778 TGCGTTGGGTGCCTCCAA 62.197 61.111 4.01 4.01 43.82 3.53
1792 3576 4.947147 GTGCGTTGGGTGCCTCCA 62.947 66.667 0.00 0.00 38.11 3.86
1794 3578 4.947147 TGGTGCGTTGGGTGCCTC 62.947 66.667 0.00 0.00 0.00 4.70
1795 3579 3.808218 ATTGGTGCGTTGGGTGCCT 62.808 57.895 0.00 0.00 0.00 4.75
1796 3580 3.281359 GATTGGTGCGTTGGGTGCC 62.281 63.158 0.00 0.00 0.00 5.01
1797 3581 2.081425 TTGATTGGTGCGTTGGGTGC 62.081 55.000 0.00 0.00 0.00 5.01
1798 3582 0.318614 GTTGATTGGTGCGTTGGGTG 60.319 55.000 0.00 0.00 0.00 4.61
1799 3583 1.460273 GGTTGATTGGTGCGTTGGGT 61.460 55.000 0.00 0.00 0.00 4.51
1800 3584 1.288752 GGTTGATTGGTGCGTTGGG 59.711 57.895 0.00 0.00 0.00 4.12
1801 3585 1.288752 GGGTTGATTGGTGCGTTGG 59.711 57.895 0.00 0.00 0.00 3.77
1802 3586 1.288752 GGGGTTGATTGGTGCGTTG 59.711 57.895 0.00 0.00 0.00 4.10
1803 3587 2.265182 CGGGGTTGATTGGTGCGTT 61.265 57.895 0.00 0.00 0.00 4.84
1804 3588 2.671619 CGGGGTTGATTGGTGCGT 60.672 61.111 0.00 0.00 0.00 5.24
1805 3589 1.519751 TTTCGGGGTTGATTGGTGCG 61.520 55.000 0.00 0.00 0.00 5.34
1806 3590 0.894835 ATTTCGGGGTTGATTGGTGC 59.105 50.000 0.00 0.00 0.00 5.01
1807 3591 1.892474 ACATTTCGGGGTTGATTGGTG 59.108 47.619 0.00 0.00 0.00 4.17
1808 3592 2.167662 GACATTTCGGGGTTGATTGGT 58.832 47.619 0.00 0.00 0.00 3.67
1809 3593 1.476488 GGACATTTCGGGGTTGATTGG 59.524 52.381 0.00 0.00 0.00 3.16
1810 3594 1.132262 CGGACATTTCGGGGTTGATTG 59.868 52.381 0.00 0.00 0.00 2.67
1811 3595 1.271707 ACGGACATTTCGGGGTTGATT 60.272 47.619 0.00 0.00 0.00 2.57
1812 3596 0.326927 ACGGACATTTCGGGGTTGAT 59.673 50.000 0.00 0.00 0.00 2.57
1813 3597 0.320946 GACGGACATTTCGGGGTTGA 60.321 55.000 0.00 0.00 0.00 3.18
1814 3598 0.321298 AGACGGACATTTCGGGGTTG 60.321 55.000 0.00 0.00 0.00 3.77
1815 3599 0.036671 GAGACGGACATTTCGGGGTT 60.037 55.000 0.00 0.00 0.00 4.11
1816 3600 1.595357 GAGACGGACATTTCGGGGT 59.405 57.895 0.00 0.00 0.00 4.95
1817 3601 1.518572 CGAGACGGACATTTCGGGG 60.519 63.158 0.00 0.00 0.00 5.73
1818 3602 4.088421 CGAGACGGACATTTCGGG 57.912 61.111 0.00 0.00 0.00 5.14
1829 3613 0.673985 TGAGATATTGGCCCGAGACG 59.326 55.000 0.00 0.00 0.00 4.18
1830 3614 2.037772 ACATGAGATATTGGCCCGAGAC 59.962 50.000 0.00 0.00 0.00 3.36
1831 3615 2.037641 CACATGAGATATTGGCCCGAGA 59.962 50.000 0.00 0.00 0.00 4.04
1832 3616 2.420642 CACATGAGATATTGGCCCGAG 58.579 52.381 0.00 0.00 0.00 4.63
1833 3617 1.543208 GCACATGAGATATTGGCCCGA 60.543 52.381 0.00 0.00 0.00 5.14
1844 3628 2.205911 TGAAAAACGTCGCACATGAGA 58.794 42.857 0.00 0.00 0.00 3.27
2018 3803 1.153647 CCCGCATGCGAGTAACTGA 60.154 57.895 39.90 0.00 42.83 3.41
2267 4052 4.212913 GAGAGGCTCCATGCGCGA 62.213 66.667 12.10 0.00 44.05 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.