AutoCloner

Multiple sequence alignment - TraesCS1B01G102200

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G102200	chr1B	100.000	6690	0	0	3076	9765	112208469	112201780	0.000000e+00	12355.0
1	TraesCS1B01G102200	chr1B	100.000	1861	0	0	987	2847	112210558	112208698	0.000000e+00	3437.0
2	TraesCS1B01G102200	chr1B	81.365	1685	279	22	6669	8322	20174799	20176479	0.000000e+00	1339.0
3	TraesCS1B01G102200	chr1B	100.000	676	0	0	1	676	112211544	112210869	0.000000e+00	1249.0
4	TraesCS1B01G102200	chr1B	84.732	989	136	10	1483	2463	17703174	17704155	0.000000e+00	976.0
5	TraesCS1B01G102200	chr1B	77.444	1330	256	25	7043	8355	136628246	136629548	0.000000e+00	754.0
6	TraesCS1B01G102200	chr1B	94.010	384	20	3	2466	2847	252977613	252977231	6.580000e-161	579.0
7	TraesCS1B01G102200	chr1B	88.636	352	32	6	3449	3796	17704181	17704528	1.170000e-113	422.0
8	TraesCS1B01G102200	chr1B	85.668	307	37	7	3449	3754	419387258	419386958	5.690000e-82	316.0
9	TraesCS1B01G102200	chr1B	82.019	317	40	10	1000	1315	20172931	20173231	4.530000e-63	254.0
10	TraesCS1B01G102200	chr1B	96.296	135	4	1	5748	5882	302453808	302453941	4.590000e-53	220.0
11	TraesCS1B01G102200	chr1B	78.481	316	52	9	1000	1315	41506645	41506944	1.000000e-44	193.0
12	TraesCS1B01G102200	chr1B	92.000	50	3	1	5709	5758	224326115	224326067	1.760000e-07	69.4
13	TraesCS1B01G102200	chr1D	95.731	3490	97	17	5879	9321	70597125	70593641	0.000000e+00	5572.0
14	TraesCS1B01G102200	chr1D	95.366	1856	71	8	987	2839	70602559	70600716	0.000000e+00	2937.0
15	TraesCS1B01G102200	chr1D	93.001	1886	88	16	3077	4952	70600295	70598444	0.000000e+00	2712.0
16	TraesCS1B01G102200	chr1D	78.561	1320	257	22	7052	8355	81743081	81744390	0.000000e+00	846.0
17	TraesCS1B01G102200	chr1D	77.526	1326	263	27	7051	8355	83691035	83692346	0.000000e+00	765.0
18	TraesCS1B01G102200	chr1D	89.834	482	33	9	4951	5424	70598075	70597602	1.080000e-168	604.0
19	TraesCS1B01G102200	chr1D	90.979	388	27	6	2463	2847	182037942	182037560	5.230000e-142	516.0
20	TraesCS1B01G102200	chr1D	83.305	581	63	16	3449	4000	309577400	309576825	1.130000e-138	505.0
21	TraesCS1B01G102200	chr1D	91.843	331	25	2	2518	2847	821250	821579	2.480000e-125	460.0
22	TraesCS1B01G102200	chr1D	90.040	251	16	5	9520	9763	70585322	70585074	5.690000e-82	316.0
23	TraesCS1B01G102200	chr1D	86.688	308	13	7	5416	5723	70597397	70597118	5.690000e-82	316.0
24	TraesCS1B01G102200	chr1D	89.447	199	21	0	9279	9477	70585600	70585402	1.630000e-62	252.0
25	TraesCS1B01G102200	chr1D	94.964	139	5	2	5745	5882	29983283	29983146	5.940000e-52	217.0
26	TraesCS1B01G102200	chr1D	93.706	143	9	0	1	143	445315667	445315809	2.140000e-51	215.0
27	TraesCS1B01G102200	chr1D	93.151	146	9	1	1	146	77269152	77269296	7.680000e-51	213.0
28	TraesCS1B01G102200	chr1D	74.147	557	107	22	3449	3975	397534476	397533927	7.740000e-46	196.0
29	TraesCS1B01G102200	chr1D	86.577	149	14	2	9325	9467	70586092	70585944	1.020000e-34	159.0
30	TraesCS1B01G102200	chr1D	90.196	102	4	3	570	671	70602845	70602750	2.860000e-25	128.0
31	TraesCS1B01G102200	chr1D	96.364	55	2	0	9240	9294	70585669	70585615	3.760000e-14	91.6
32	TraesCS1B01G102200	chr1D	97.143	35	0	1	4951	4985	303443635	303443602	3.810000e-04	58.4
33	TraesCS1B01G102200	chr1D	97.143	35	0	1	4951	4985	316424557	316424524	3.810000e-04	58.4
34	TraesCS1B01G102200	chr1D	97.143	35	0	1	4951	4985	320886692	320886659	3.810000e-04	58.4
35	TraesCS1B01G102200	chr1D	97.059	34	0	1	4952	4985	377757670	377757702	1.000000e-03	56.5
36	TraesCS1B01G102200	chr1A	96.254	3097	99	7	5879	8969	71090308	71087223	0.000000e+00	5060.0
37	TraesCS1B01G102200	chr1A	91.209	1877	90	26	3113	4952	71093511	71091673	0.000000e+00	2483.0
38	TraesCS1B01G102200	chr1A	96.690	1148	36	1	987	2132	71095627	71094480	0.000000e+00	1908.0
39	TraesCS1B01G102200	chr1A	81.202	1697	285	20	6669	8336	15193100	15194791	0.000000e+00	1336.0
40	TraesCS1B01G102200	chr1A	93.750	672	27	8	2132	2796	71094199	71093536	0.000000e+00	994.0
41	TraesCS1B01G102200	chr1A	84.226	989	136	16	1492	2463	389102312	389101327	0.000000e+00	944.0
42	TraesCS1B01G102200	chr1A	78.696	1319	257	19	7052	8355	100270871	100272180	0.000000e+00	857.0
43	TraesCS1B01G102200	chr1A	91.286	482	32	7	4951	5424	71091304	71090825	0.000000e+00	649.0
44	TraesCS1B01G102200	chr1A	88.268	537	50	9	9240	9765	71085784	71085250	1.790000e-176	630.0
45	TraesCS1B01G102200	chr1A	92.969	384	24	3	2466	2847	171018262	171017880	3.080000e-154	556.0
46	TraesCS1B01G102200	chr1A	91.883	308	17	5	5416	5723	71090600	71090301	3.260000e-114	424.0
47	TraesCS1B01G102200	chr1A	81.962	316	42	8	1000	1315	15191139	15191439	4.530000e-63	254.0
48	TraesCS1B01G102200	chr1A	86.667	165	19	1	3839	4000	389074811	389074647	7.790000e-41	180.0
49	TraesCS1B01G102200	chr1A	90.741	108	4	5	570	676	71095924	71095822	1.320000e-28	139.0
50	TraesCS1B01G102200	chrUn	81.305	1701	282	20	6669	8339	9847029	9845335	0.000000e+00	1347.0
51	TraesCS1B01G102200	chrUn	81.206	282	38	8	1000	1281	444703036	444703302	7.680000e-51	213.0
52	TraesCS1B01G102200	chrUn	84.021	194	26	4	3097	3288	79715449	79715639	2.170000e-41	182.0
53	TraesCS1B01G102200	chr6D	84.608	981	135	10	1492	2463	453935059	453936032	0.000000e+00	961.0
54	TraesCS1B01G102200	chr6D	97.143	35	0	1	4951	4985	72955325	72955358	3.810000e-04	58.4
55	TraesCS1B01G102200	chr6D	97.143	35	0	1	4951	4985	103294232	103294265	3.810000e-04	58.4
56	TraesCS1B01G102200	chr7B	84.490	980	138	8	1492	2463	532152130	532151157	0.000000e+00	955.0
57	TraesCS1B01G102200	chr7B	85.399	589	52	16	3449	4008	69987771	69988354	1.830000e-161	580.0
58	TraesCS1B01G102200	chr7B	85.135	592	51	18	3449	4011	532151131	532150548	1.100000e-158	571.0
59	TraesCS1B01G102200	chr7B	86.575	365	40	5	3992	4349	69988395	69988757	2.560000e-105	394.0
60	TraesCS1B01G102200	chr7B	88.644	317	31	5	3449	3764	679677310	679677622	1.990000e-101	381.0
61	TraesCS1B01G102200	chr7B	85.753	365	43	5	3992	4349	532150510	532150148	2.570000e-100	377.0
62	TraesCS1B01G102200	chr7B	85.479	365	44	5	3992	4349	679678100	679678462	1.200000e-98	372.0
63	TraesCS1B01G102200	chr7B	90.833	240	15	6	3193	3429	106137772	106137537	2.050000e-81	315.0
64	TraesCS1B01G102200	chr7B	87.440	207	23	1	3790	3993	679677839	679678045	1.640000e-57	235.0
65	TraesCS1B01G102200	chr7B	88.571	175	16	4	5709	5882	49762772	49762943	9.940000e-50	209.0
66	TraesCS1B01G102200	chr7B	94.643	56	3	0	4951	5006	736087975	736088030	4.860000e-13	87.9
67	TraesCS1B01G102200	chr7B	94.444	54	3	0	4953	5006	736136039	736136092	6.280000e-12	84.2
68	TraesCS1B01G102200	chr5D	84.506	981	135	11	1492	2463	332219116	332220088	0.000000e+00	953.0
69	TraesCS1B01G102200	chr5D	94.964	139	5	2	5745	5882	365185214	365185077	5.940000e-52	217.0
70	TraesCS1B01G102200	chr5D	95.506	89	3	1	5794	5882	151466547	151466460	3.680000e-29	141.0
71	TraesCS1B01G102200	chr5D	94.737	57	3	0	4950	5006	535639261	535639317	1.350000e-13	89.8
72	TraesCS1B01G102200	chr5D	88.679	53	4	2	5703	5754	417435022	417435073	8.190000e-06	63.9
73	TraesCS1B01G102200	chr3B	84.506	981	134	12	1492	2463	736665082	736664111	0.000000e+00	953.0
74	TraesCS1B01G102200	chr3B	83.393	560	54	15	3449	3981	736664085	736663538	5.300000e-132	483.0
75	TraesCS1B01G102200	chr3B	86.242	298	33	6	3112	3407	2021947	2021656	5.690000e-82	316.0
76	TraesCS1B01G102200	chr3B	84.177	316	43	5	3112	3425	84605460	84605150	5.730000e-77	300.0
77	TraesCS1B01G102200	chr4D	84.388	980	138	9	1492	2463	97720552	97719580	0.000000e+00	948.0
78	TraesCS1B01G102200	chr4D	89.701	301	21	7	3097	3394	12439059	12439352	9.260000e-100	375.0
79	TraesCS1B01G102200	chr4D	80.966	352	55	7	4008	4350	96152406	96152058	1.620000e-67	268.0
80	TraesCS1B01G102200	chr4D	93.103	145	10	0	1	145	319981330	319981474	7.680000e-51	213.0
81	TraesCS1B01G102200	chr4D	88.136	59	6	1	8988	9046	62728870	62728813	1.760000e-07	69.4
82	TraesCS1B01G102200	chr4D	97.143	35	0	1	4951	4985	187988589	187988556	3.810000e-04	58.4
83	TraesCS1B01G102200	chr4D	97.143	35	0	1	4951	4985	346971021	346970988	3.810000e-04	58.4
84	TraesCS1B01G102200	chr5A	83.602	994	146	11	1479	2463	387355974	387354989	0.000000e+00	917.0
85	TraesCS1B01G102200	chr5A	84.459	592	58	14	3449	4011	387354963	387354377	3.990000e-153	553.0
86	TraesCS1B01G102200	chr5A	84.932	365	47	4	3992	4349	387354339	387353976	7.210000e-96	363.0
87	TraesCS1B01G102200	chr5A	82.698	341	48	6	4019	4350	329805325	329805663	9.590000e-75	292.0
88	TraesCS1B01G102200	chr5A	92.517	147	11	0	1	147	490810524	490810670	2.760000e-50	211.0
89	TraesCS1B01G102200	chr5A	88.889	54	2	4	5703	5754	109249304	109249355	8.190000e-06	63.9
90	TraesCS1B01G102200	chr3D	90.286	350	16	4	2500	2847	590202883	590202550	9.000000e-120	442.0
91	TraesCS1B01G102200	chr3D	87.859	313	32	4	3097	3407	590202408	590202100	7.210000e-96	363.0
92	TraesCS1B01G102200	chr3D	89.615	260	11	2	2588	2847	260335837	260336080	5.690000e-82	316.0
93	TraesCS1B01G102200	chr3D	88.679	53	4	2	5703	5754	307444735	307444786	8.190000e-06	63.9
94	TraesCS1B01G102200	chr3D	94.872	39	2	0	9428	9466	181815632	181815670	2.940000e-05	62.1
95	TraesCS1B01G102200	chr3D	94.737	38	1	1	4951	4988	256315439	256315403	3.810000e-04	58.4
96	TraesCS1B01G102200	chr7D	92.135	267	15	5	2583	2847	69580143	69579881	1.200000e-98	372.0
97	TraesCS1B01G102200	chr7D	94.964	139	5	2	5753	5890	87657401	87657538	5.940000e-52	217.0
98	TraesCS1B01G102200	chr7D	94.964	139	5	2	5745	5882	417646894	417647031	5.940000e-52	217.0
99	TraesCS1B01G102200	chr7D	93.103	145	10	0	1	145	103229401	103229257	7.680000e-51	213.0
100	TraesCS1B01G102200	chr7D	92.568	148	11	0	1	148	464656382	464656529	7.680000e-51	213.0
101	TraesCS1B01G102200	chr7D	95.455	44	1	1	9428	9470	621820242	621820199	1.760000e-07	69.4
102	TraesCS1B01G102200	chr7D	90.566	53	2	2	5704	5754	117661048	117661099	6.330000e-07	67.6
103	TraesCS1B01G102200	chr7D	97.222	36	0	1	4951	4986	430853294	430853328	1.060000e-04	60.2
104	TraesCS1B01G102200	chr6B	86.707	331	24	5	3097	3425	716248960	716249272	5.610000e-92	350.0
105	TraesCS1B01G102200	chr6B	91.954	87	6	1	5796	5882	117049306	117049221	4.790000e-23	121.0
106	TraesCS1B01G102200	chr6A	86.901	313	33	5	3097	3407	9580839	9580533	2.610000e-90	344.0
107	TraesCS1B01G102200	chr6A	86.084	309	22	8	2466	2772	2728520	2728809	7.360000e-81	313.0
108	TraesCS1B01G102200	chr6A	86.084	309	22	8	2466	2772	7970493	7970782	7.360000e-81	313.0
109	TraesCS1B01G102200	chr6A	81.534	352	54	6	4008	4350	574195392	574195043	7.470000e-71	279.0
110	TraesCS1B01G102200	chr2B	91.525	236	13	6	3193	3425	475752477	475752246	1.580000e-82	318.0
111	TraesCS1B01G102200	chr2B	85.987	314	23	8	2461	2772	601190198	601190492	5.690000e-82	316.0
112	TraesCS1B01G102200	chr2B	94.964	139	5	2	5753	5890	255290345	255290482	5.940000e-52	217.0
113	TraesCS1B01G102200	chr4B	97.710	131	2	1	5752	5882	131940330	131940201	3.550000e-54	224.0
114	TraesCS1B01G102200	chr4B	93.706	143	9	0	1	143	237609561	237609419	2.140000e-51	215.0
115	TraesCS1B01G102200	chr4B	93.750	144	8	1	1	143	426815642	426815499	2.140000e-51	215.0
116	TraesCS1B01G102200	chr4B	77.200	250	44	8	4951	5195	316984484	316984725	6.150000e-27	134.0
117	TraesCS1B01G102200	chr4A	94.964	139	5	2	5745	5882	295639558	295639421	5.940000e-52	217.0
118	TraesCS1B01G102200	chr4A	77.200	250	45	8	4951	5195	371791154	371791396	1.710000e-27	135.0
119	TraesCS1B01G102200	chr4A	97.222	36	1	0	9431	9466	590181037	590181002	2.940000e-05	62.1
120	TraesCS1B01G102200	chr2A	92.414	145	9	2	1	144	669617018	669617161	1.290000e-48	206.0
121	TraesCS1B01G102200	chr2A	89.362	47	4	1	8923	8969	6971435	6971480	3.810000e-04	58.4
122	TraesCS1B01G102200	chr2A	89.362	47	4	1	8923	8969	6973379	6973424	3.810000e-04	58.4
123	TraesCS1B01G102200	chr2A	89.362	47	4	1	8923	8969	6974211	6974256	3.810000e-04	58.4
124	TraesCS1B01G102200	chr2A	89.362	47	4	1	8923	8969	6978300	6978345	3.810000e-04	58.4
125	TraesCS1B01G102200	chr2A	89.362	47	4	1	8923	8969	6980796	6980841	3.810000e-04	58.4
126	TraesCS1B01G102200	chr2A	89.362	47	4	1	8923	8969	6981628	6981673	3.810000e-04	58.4
127	TraesCS1B01G102200	chr2A	89.362	47	4	1	8923	8969	6983286	6983331	3.810000e-04	58.4
128	TraesCS1B01G102200	chr5B	94.915	59	3	0	4950	5008	676247962	676248020	1.040000e-14	93.5
129	TraesCS1B01G102200	chr5B	93.617	47	2	1	5708	5754	366656353	366656308	1.760000e-07	69.4
130	TraesCS1B01G102200	chr7A	95.238	42	2	0	9425	9466	702963419	702963378	6.330000e-07	67.6
131	TraesCS1B01G102200	chr3A	100.000	28	0	0	9428	9455	534183543	534183516	1.800000e-02	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G102200	chr1B	112201780	112211544	9764	True	5680.333333	12355	100.000000	1	9765	3	chr1B.!!$R4	9764
1	TraesCS1B01G102200	chr1B	20172931	20176479	3548	False	796.500000	1339	81.692000	1000	8322	2	chr1B.!!$F5	7322
2	TraesCS1B01G102200	chr1B	136628246	136629548	1302	False	754.000000	754	77.444000	7043	8355	1	chr1B.!!$F2	1312
3	TraesCS1B01G102200	chr1B	17703174	17704528	1354	False	699.000000	976	86.684000	1483	3796	2	chr1B.!!$F4	2313
4	TraesCS1B01G102200	chr1D	70593641	70602845	9204	True	2044.833333	5572	91.802667	570	9321	6	chr1D.!!$R9	8751
5	TraesCS1B01G102200	chr1D	81743081	81744390	1309	False	846.000000	846	78.561000	7052	8355	1	chr1D.!!$F3	1303
6	TraesCS1B01G102200	chr1D	83691035	83692346	1311	False	765.000000	765	77.526000	7051	8355	1	chr1D.!!$F4	1304
7	TraesCS1B01G102200	chr1D	309576825	309577400	575	True	505.000000	505	83.305000	3449	4000	1	chr1D.!!$R4	551
8	TraesCS1B01G102200	chr1D	70585074	70586092	1018	True	204.650000	316	90.607000	9240	9763	4	chr1D.!!$R8	523
9	TraesCS1B01G102200	chr1A	71085250	71095924	10674	True	1535.875000	5060	92.510125	570	9765	8	chr1A.!!$R4	9195
10	TraesCS1B01G102200	chr1A	389101327	389102312	985	True	944.000000	944	84.226000	1492	2463	1	chr1A.!!$R3	971
11	TraesCS1B01G102200	chr1A	100270871	100272180	1309	False	857.000000	857	78.696000	7052	8355	1	chr1A.!!$F1	1303
12	TraesCS1B01G102200	chr1A	15191139	15194791	3652	False	795.000000	1336	81.582000	1000	8336	2	chr1A.!!$F2	7336
13	TraesCS1B01G102200	chrUn	9845335	9847029	1694	True	1347.000000	1347	81.305000	6669	8339	1	chrUn.!!$R1	1670
14	TraesCS1B01G102200	chr6D	453935059	453936032	973	False	961.000000	961	84.608000	1492	2463	1	chr6D.!!$F3	971
15	TraesCS1B01G102200	chr7B	532150148	532152130	1982	True	634.333333	955	85.126000	1492	4349	3	chr7B.!!$R2	2857
16	TraesCS1B01G102200	chr7B	69987771	69988757	986	False	487.000000	580	85.987000	3449	4349	2	chr7B.!!$F4	900
17	TraesCS1B01G102200	chr7B	679677310	679678462	1152	False	329.333333	381	87.187667	3449	4349	3	chr7B.!!$F5	900
18	TraesCS1B01G102200	chr5D	332219116	332220088	972	False	953.000000	953	84.506000	1492	2463	1	chr5D.!!$F1	971
19	TraesCS1B01G102200	chr3B	736663538	736665082	1544	True	718.000000	953	83.949500	1492	3981	2	chr3B.!!$R3	2489
20	TraesCS1B01G102200	chr4D	97719580	97720552	972	True	948.000000	948	84.388000	1492	2463	1	chr4D.!!$R3	971
21	TraesCS1B01G102200	chr5A	387353976	387355974	1998	True	611.000000	917	84.331000	1479	4349	3	chr5A.!!$R1	2870
22	TraesCS1B01G102200	chr3D	590202100	590202883	783	True	402.500000	442	89.072500	2500	3407	2	chr3D.!!$R2	907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
333	334	0.029577	AGATCCCCTTCCCCTTCCTC	60.030	60.000	0.00	0.00	0.00	3.71	F
441	442	0.179045	ACAGTGCAAGGTCAGGACAC	60.179	55.000	1.41	0.00	0.00	3.67	F
442	443	0.179048	CAGTGCAAGGTCAGGACACA	60.179	55.000	1.41	0.00	33.69	3.72	F
603	604	0.676782	CGTCCCCTGCGAATTTCCTT	60.677	55.000	0.00	0.00	0.00	3.36	F
606	607	0.817654	CCCCTGCGAATTTCCTTTCC	59.182	55.000	0.00	0.00	0.00	3.13	F
1375	1389	1.020437	GATCTGCTTGCCTGGCTTAC	58.980	55.000	21.03	9.22	0.00	2.34	F
2558	2879	1.669211	GGCGACGCTTTAGACAGACTT	60.669	52.381	20.77	0.00	0.00	3.01	F
3178	3751	0.467290	GTGTGAGCCCAGTTTTCCCA	60.467	55.000	0.00	0.00	0.00	4.37	F
3276	3851	0.734889	CACTAAAGCGCCAATCAGGG	59.265	55.000	2.29	0.00	38.09	4.45	F
4350	5228	1.273048	TCACAATGACAGCCATTTGCC	59.727	47.619	0.00	0.00	42.55	4.52	F
5185	6433	0.250295	CCGGGACTGCTTCTTGTTCA	60.250	55.000	0.00	0.00	0.00	3.18	F
5848	7344	0.108138	AGCCTAGGTGTGCTTAAGCG	60.108	55.000	21.97	6.66	45.83	4.68	F
5859	7355	0.509070	GCTTAAGCGCTCGATTAGGC	59.491	55.000	12.06	16.07	40.63	3.93	F
7011	8907	1.153549	CTAGGGTGACTGCGAAGGC	60.154	63.158	0.00	0.00	40.52	4.35	F
7561	9458	2.472695	TACTTGCGCTGAAATCTGGT	57.527	45.000	9.73	0.00	0.00	4.00	F
8296	10199	0.902516	AGGACGCTTCAGGCTCTTCT	60.903	55.000	0.00	0.00	39.13	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1722	1739	0.107703	AATGATTCGAGCAGCGGGAA	60.108	50.000	3.99	3.99	41.33	3.97	R
2115	2139	1.017387	CCTTTGGCTTATCGGCTCAC	58.983	55.000	0.00	0.00	39.32	3.51	R
2203	2508	2.808543	ACGATGAAAAGGTCTGCTGTTC	59.191	45.455	0.00	0.00	0.00	3.18	R
2472	2792	0.717224	CGCTTCGCTTTACCGCTTTA	59.283	50.000	0.00	0.00	0.00	1.85	R
2563	2884	4.809193	ACTCTATTCTACTGCCCATCAGA	58.191	43.478	0.00	0.00	45.72	3.27	R
2826	3148	0.032217	CTCCTGCCCTCTCTTCTCCT	60.032	60.000	0.00	0.00	0.00	3.69	R
4372	5250	0.549950	ATCATGACTGAGCTTGGGGG	59.450	55.000	0.00	0.00	34.12	5.40	R
4566	5444	0.824109	TGGCCACGATGAGTCTAAGG	59.176	55.000	0.00	0.00	0.00	2.69	R
4579	5457	2.130073	GACTTGCTTTCCGTGGCCAC	62.130	60.000	26.78	26.78	0.00	5.01	R
5277	6525	0.035056	AAATCCCCAACAGAGCGAGG	60.035	55.000	0.00	0.00	0.00	4.63	R
6869	8765	2.103771	GAGGTGGCTGCTGATATGAAGA	59.896	50.000	0.00	0.00	0.00	2.87	R
7345	9241	1.774856	ACAACCCCAAGCAAGTCTACT	59.225	47.619	0.00	0.00	0.00	2.57	R
7561	9458	2.139917	CCGTTGAATTCACCAACTCGA	58.860	47.619	7.89	0.00	41.11	4.04	R
8041	9938	0.461548	CTTGTGCTGAGAGGCCGATA	59.538	55.000	0.00	0.00	0.00	2.92	R
8700	10606	0.810031	GCCATTCGCATACGTCTGGT	60.810	55.000	2.90	0.00	41.14	4.00	R
9646	12834	0.675083	TGCACCAACCAATGCAGAAG	59.325	50.000	0.00	0.00	46.63	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	3.104837	ATCAAGCAGGTACCAGGGT	57.895	52.632	15.94	8.63	0.00	4.34
19	20	2.263895	ATCAAGCAGGTACCAGGGTA	57.736	50.000	15.94	0.00	0.00	3.69
21	22	2.557869	TCAAGCAGGTACCAGGGTATT	58.442	47.619	15.94	0.00	32.82	1.89
22	23	3.726790	TCAAGCAGGTACCAGGGTATTA	58.273	45.455	15.94	0.00	32.82	0.98
23	24	3.453353	TCAAGCAGGTACCAGGGTATTAC	59.547	47.826	15.94	0.00	32.82	1.89
26	27	2.367894	GCAGGTACCAGGGTATTACCTC	59.632	54.545	15.94	3.41	39.34	3.85
27	28	2.970640	CAGGTACCAGGGTATTACCTCC	59.029	54.545	15.94	1.31	39.34	4.30
28	29	2.593466	AGGTACCAGGGTATTACCTCCA	59.407	50.000	15.94	0.00	39.34	3.86
29	30	3.211465	AGGTACCAGGGTATTACCTCCAT	59.789	47.826	15.94	0.15	39.34	3.41
31	32	3.431411	ACCAGGGTATTACCTCCATCA	57.569	47.619	12.54	0.00	39.34	3.07
32	33	3.743132	ACCAGGGTATTACCTCCATCAA	58.257	45.455	12.54	0.00	39.34	2.57
35	36	4.040952	CCAGGGTATTACCTCCATCAAGAG	59.959	50.000	12.54	0.00	39.34	2.85
41	42	2.507944	CTCCATCAAGAGGGCCCG	59.492	66.667	18.44	1.05	31.15	6.13
42	43	2.040442	TCCATCAAGAGGGCCCGA	59.960	61.111	18.44	8.04	31.15	5.14
43	44	1.615124	TCCATCAAGAGGGCCCGAA	60.615	57.895	18.44	1.01	31.15	4.30
44	45	1.452108	CCATCAAGAGGGCCCGAAC	60.452	63.158	18.44	12.45	0.00	3.95
46	47	1.616628	ATCAAGAGGGCCCGAACCT	60.617	57.895	18.44	9.75	42.18	3.50
48	49	0.976073	TCAAGAGGGCCCGAACCTAG	60.976	60.000	18.44	4.09	38.79	3.02
49	50	0.976073	CAAGAGGGCCCGAACCTAGA	60.976	60.000	18.44	0.00	38.79	2.43
50	51	0.031010	AAGAGGGCCCGAACCTAGAT	60.031	55.000	18.44	0.00	38.79	1.98
51	52	0.858369	AGAGGGCCCGAACCTAGATA	59.142	55.000	18.44	0.00	38.79	1.98
54	55	1.767088	AGGGCCCGAACCTAGATAAAC	59.233	52.381	18.44	0.00	36.32	2.01
55	56	1.487558	GGGCCCGAACCTAGATAAACA	59.512	52.381	5.69	0.00	0.00	2.83
56	57	2.105993	GGGCCCGAACCTAGATAAACAT	59.894	50.000	5.69	0.00	0.00	2.71
59	60	3.492137	GCCCGAACCTAGATAAACATCGT	60.492	47.826	0.00	0.00	0.00	3.73
60	61	4.049186	CCCGAACCTAGATAAACATCGTG	58.951	47.826	0.00	0.00	0.00	4.35
63	64	4.738740	CGAACCTAGATAAACATCGTGTCC	59.261	45.833	0.00	0.00	0.00	4.02
64	65	4.667519	ACCTAGATAAACATCGTGTCCC	57.332	45.455	0.00	0.00	0.00	4.46
66	67	3.641906	CCTAGATAAACATCGTGTCCCCT	59.358	47.826	0.00	0.00	0.00	4.79
68	69	4.138487	AGATAAACATCGTGTCCCCTTC	57.862	45.455	0.00	0.00	0.00	3.46
69	70	2.773993	TAAACATCGTGTCCCCTTCC	57.226	50.000	0.00	0.00	0.00	3.46
70	71	1.064825	AAACATCGTGTCCCCTTCCT	58.935	50.000	0.00	0.00	0.00	3.36
71	72	0.613777	AACATCGTGTCCCCTTCCTC	59.386	55.000	0.00	0.00	0.00	3.71
72	73	1.265454	ACATCGTGTCCCCTTCCTCC	61.265	60.000	0.00	0.00	0.00	4.30
73	74	0.978146	CATCGTGTCCCCTTCCTCCT	60.978	60.000	0.00	0.00	0.00	3.69
74	75	0.978146	ATCGTGTCCCCTTCCTCCTG	60.978	60.000	0.00	0.00	0.00	3.86
76	77	1.481056	CGTGTCCCCTTCCTCCTGTT	61.481	60.000	0.00	0.00	0.00	3.16
77	78	1.652947	GTGTCCCCTTCCTCCTGTTA	58.347	55.000	0.00	0.00	0.00	2.41
79	80	1.151413	TGTCCCCTTCCTCCTGTTACT	59.849	52.381	0.00	0.00	0.00	2.24
80	81	2.267192	GTCCCCTTCCTCCTGTTACTT	58.733	52.381	0.00	0.00	0.00	2.24
81	82	2.643304	GTCCCCTTCCTCCTGTTACTTT	59.357	50.000	0.00	0.00	0.00	2.66
82	83	2.910977	TCCCCTTCCTCCTGTTACTTTC	59.089	50.000	0.00	0.00	0.00	2.62
83	84	2.354805	CCCCTTCCTCCTGTTACTTTCG	60.355	54.545	0.00	0.00	0.00	3.46
85	86	3.197983	CCCTTCCTCCTGTTACTTTCGAT	59.802	47.826	0.00	0.00	0.00	3.59
88	89	3.709587	TCCTCCTGTTACTTTCGATCCT	58.290	45.455	0.00	0.00	0.00	3.24
92	93	5.360144	CCTCCTGTTACTTTCGATCCTTAGA	59.640	44.000	0.00	0.00	0.00	2.10
93	94	6.205101	TCCTGTTACTTTCGATCCTTAGAC	57.795	41.667	0.00	0.00	0.00	2.59
94	95	5.035443	CCTGTTACTTTCGATCCTTAGACG	58.965	45.833	0.00	0.00	0.00	4.18
95	96	4.418392	TGTTACTTTCGATCCTTAGACGC	58.582	43.478	0.00	0.00	0.00	5.19
96	97	4.082625	TGTTACTTTCGATCCTTAGACGCA	60.083	41.667	0.00	0.00	0.00	5.24
97	98	2.877335	ACTTTCGATCCTTAGACGCAC	58.123	47.619	0.00	0.00	0.00	5.34
99	100	2.561733	TTCGATCCTTAGACGCACAG	57.438	50.000	0.00	0.00	0.00	3.66
100	101	1.460504	TCGATCCTTAGACGCACAGT	58.539	50.000	0.00	0.00	0.00	3.55
102	103	2.159421	TCGATCCTTAGACGCACAGTTC	60.159	50.000	0.00	0.00	0.00	3.01
103	104	2.415491	CGATCCTTAGACGCACAGTTCA	60.415	50.000	0.00	0.00	0.00	3.18
104	105	2.724977	TCCTTAGACGCACAGTTCAG	57.275	50.000	0.00	0.00	0.00	3.02
106	107	1.272490	CCTTAGACGCACAGTTCAGGA	59.728	52.381	0.00	0.00	0.00	3.86
107	108	2.329379	CTTAGACGCACAGTTCAGGAC	58.671	52.381	0.00	0.00	0.00	3.85
108	109	0.601558	TAGACGCACAGTTCAGGACC	59.398	55.000	0.00	0.00	0.00	4.46
109	110	1.668151	GACGCACAGTTCAGGACCC	60.668	63.158	0.00	0.00	0.00	4.46
110	111	2.358737	CGCACAGTTCAGGACCCC	60.359	66.667	0.00	0.00	0.00	4.95
111	112	2.034221	GCACAGTTCAGGACCCCC	59.966	66.667	0.00	0.00	0.00	5.40
112	113	2.529744	GCACAGTTCAGGACCCCCT	61.530	63.158	0.00	0.00	45.74	4.79
113	114	1.198759	GCACAGTTCAGGACCCCCTA	61.199	60.000	0.00	0.00	42.02	3.53
114	115	0.613777	CACAGTTCAGGACCCCCTAC	59.386	60.000	0.00	0.00	42.02	3.18
115	116	0.546988	ACAGTTCAGGACCCCCTACC	60.547	60.000	0.00	0.00	42.02	3.18
121	122	2.757422	AGGACCCCCTACCTGAGAT	58.243	57.895	0.00	0.00	42.15	2.75
122	123	0.563672	AGGACCCCCTACCTGAGATC	59.436	60.000	0.00	0.00	42.15	2.75
123	124	0.563672	GGACCCCCTACCTGAGATCT	59.436	60.000	0.00	0.00	0.00	2.75
124	125	1.710816	GACCCCCTACCTGAGATCTG	58.289	60.000	0.00	0.00	0.00	2.90
125	126	0.399233	ACCCCCTACCTGAGATCTGC	60.399	60.000	0.00	0.00	0.00	4.26
126	127	1.124477	CCCCCTACCTGAGATCTGCC	61.124	65.000	0.00	0.00	0.00	4.85
127	128	1.467678	CCCCTACCTGAGATCTGCCG	61.468	65.000	0.00	0.00	0.00	5.69
128	129	1.467678	CCCTACCTGAGATCTGCCGG	61.468	65.000	0.00	0.00	0.00	6.13
131	132	1.482593	CTACCTGAGATCTGCCGGTTT	59.517	52.381	0.00	0.00	0.00	3.27
135	136	1.734465	CTGAGATCTGCCGGTTTTGAC	59.266	52.381	0.00	0.00	0.00	3.18
138	139	0.521735	GATCTGCCGGTTTTGACACC	59.478	55.000	1.90	0.00	0.00	4.16
145	146	3.089788	GGTTTTGACACCGACACCT	57.910	52.632	0.00	0.00	0.00	4.00
146	147	2.243602	GGTTTTGACACCGACACCTA	57.756	50.000	0.00	0.00	0.00	3.08
147	148	1.869132	GGTTTTGACACCGACACCTAC	59.131	52.381	0.00	0.00	0.00	3.18
148	149	2.553086	GTTTTGACACCGACACCTACA	58.447	47.619	0.00	0.00	0.00	2.74
149	150	2.519377	TTTGACACCGACACCTACAG	57.481	50.000	0.00	0.00	0.00	2.74
150	151	0.032952	TTGACACCGACACCTACAGC	59.967	55.000	0.00	0.00	0.00	4.40
151	152	1.080025	GACACCGACACCTACAGCC	60.080	63.158	0.00	0.00	0.00	4.85
152	153	1.533273	ACACCGACACCTACAGCCT	60.533	57.895	0.00	0.00	0.00	4.58
153	154	1.215647	CACCGACACCTACAGCCTC	59.784	63.158	0.00	0.00	0.00	4.70
154	155	2.341101	ACCGACACCTACAGCCTCG	61.341	63.158	0.00	0.00	0.00	4.63
155	156	2.202623	CGACACCTACAGCCTCGC	60.203	66.667	0.00	0.00	0.00	5.03
186	187	4.700365	CACACGCGAGCCGACTCA	62.700	66.667	15.93	0.00	43.66	3.41
187	188	3.973516	ACACGCGAGCCGACTCAA	61.974	61.111	15.93	0.00	43.66	3.02
189	190	1.226575	CACGCGAGCCGACTCAATA	60.227	57.895	15.93	0.00	43.66	1.90
190	191	1.226603	ACGCGAGCCGACTCAATAC	60.227	57.895	15.93	0.00	43.66	1.89
191	192	1.226575	CGCGAGCCGACTCAATACA	60.227	57.895	0.00	0.00	43.66	2.29
192	193	1.472276	CGCGAGCCGACTCAATACAC	61.472	60.000	0.00	0.00	43.66	2.90
193	194	1.472276	GCGAGCCGACTCAATACACG	61.472	60.000	0.00	0.00	43.66	4.49
194	195	0.098200	CGAGCCGACTCAATACACGA	59.902	55.000	0.00	0.00	43.66	4.35
195	196	1.828832	GAGCCGACTCAATACACGAG	58.171	55.000	0.00	0.00	42.93	4.18
196	197	1.132643	GAGCCGACTCAATACACGAGT	59.867	52.381	0.00	0.00	46.32	4.18
203	204	2.271800	CTCAATACACGAGTCCAAGGC	58.728	52.381	0.00	0.00	0.00	4.35
204	205	1.066430	TCAATACACGAGTCCAAGGCC	60.066	52.381	0.00	0.00	0.00	5.19
205	206	0.252197	AATACACGAGTCCAAGGCCC	59.748	55.000	0.00	0.00	0.00	5.80
207	208	1.541310	TACACGAGTCCAAGGCCCTG	61.541	60.000	0.00	0.00	0.00	4.45
208	209	2.203788	ACGAGTCCAAGGCCCTGA	60.204	61.111	1.80	0.00	0.00	3.86
209	210	2.286523	ACGAGTCCAAGGCCCTGAG	61.287	63.158	1.80	0.00	0.00	3.35
211	212	1.298014	GAGTCCAAGGCCCTGAGTG	59.702	63.158	1.80	0.00	0.00	3.51
212	213	2.190488	GAGTCCAAGGCCCTGAGTGG	62.190	65.000	1.80	1.64	0.00	4.00
221	222	4.742201	CCTGAGTGGGCGTGACGG	62.742	72.222	7.25	0.00	0.00	4.79
239	240	3.046280	GTGGCTCACCTACTTACGC	57.954	57.895	0.00	0.00	36.63	4.42
240	241	0.531200	GTGGCTCACCTACTTACGCT	59.469	55.000	0.00	0.00	36.63	5.07
243	244	0.815734	GCTCACCTACTTACGCTCCA	59.184	55.000	0.00	0.00	0.00	3.86
244	245	1.202313	GCTCACCTACTTACGCTCCAG	60.202	57.143	0.00	0.00	0.00	3.86
245	246	2.093106	CTCACCTACTTACGCTCCAGT	58.907	52.381	0.00	0.00	0.00	4.00
246	247	2.089980	TCACCTACTTACGCTCCAGTC	58.910	52.381	0.00	0.00	0.00	3.51
247	248	1.093159	ACCTACTTACGCTCCAGTCG	58.907	55.000	0.00	0.00	0.00	4.18
248	249	0.381089	CCTACTTACGCTCCAGTCGG	59.619	60.000	0.00	0.00	0.00	4.79
249	250	0.248539	CTACTTACGCTCCAGTCGGC	60.249	60.000	0.00	0.00	0.00	5.54
250	251	0.961857	TACTTACGCTCCAGTCGGCA	60.962	55.000	0.00	0.00	0.00	5.69
251	252	1.141881	CTTACGCTCCAGTCGGCAT	59.858	57.895	0.00	0.00	0.00	4.40
252	253	0.872021	CTTACGCTCCAGTCGGCATC	60.872	60.000	0.00	0.00	0.00	3.91
253	254	1.600511	TTACGCTCCAGTCGGCATCA	61.601	55.000	0.00	0.00	0.00	3.07
254	255	2.004808	TACGCTCCAGTCGGCATCAG	62.005	60.000	0.00	0.00	0.00	2.90
255	256	2.581354	GCTCCAGTCGGCATCAGT	59.419	61.111	0.00	0.00	0.00	3.41
256	257	1.816537	GCTCCAGTCGGCATCAGTA	59.183	57.895	0.00	0.00	0.00	2.74
257	258	0.175760	GCTCCAGTCGGCATCAGTAA	59.824	55.000	0.00	0.00	0.00	2.24
260	261	1.148157	CCAGTCGGCATCAGTAAGCG	61.148	60.000	0.00	0.00	0.00	4.68
261	262	1.141881	AGTCGGCATCAGTAAGCGG	59.858	57.895	0.00	0.00	0.00	5.52
262	263	2.202878	TCGGCATCAGTAAGCGGC	60.203	61.111	0.00	0.00	0.00	6.53
263	264	2.511373	CGGCATCAGTAAGCGGCA	60.511	61.111	1.45	0.00	0.00	5.69
264	265	1.889105	CGGCATCAGTAAGCGGCAT	60.889	57.895	1.45	0.00	0.00	4.40
265	266	1.835483	CGGCATCAGTAAGCGGCATC	61.835	60.000	1.45	0.00	0.00	3.91
267	268	0.815213	GCATCAGTAAGCGGCATCCA	60.815	55.000	1.45	0.00	0.00	3.41
268	269	1.667236	CATCAGTAAGCGGCATCCAA	58.333	50.000	1.45	0.00	0.00	3.53
270	271	1.667236	TCAGTAAGCGGCATCCAATG	58.333	50.000	1.45	0.00	0.00	2.82
271	272	0.664761	CAGTAAGCGGCATCCAATGG	59.335	55.000	1.45	0.00	0.00	3.16
274	275	1.537202	GTAAGCGGCATCCAATGGATC	59.463	52.381	12.63	7.42	40.98	3.36
276	277	0.820891	AGCGGCATCCAATGGATCAC	60.821	55.000	12.63	7.52	40.98	3.06
277	278	1.102809	GCGGCATCCAATGGATCACA	61.103	55.000	12.63	0.00	40.98	3.58
278	279	0.949397	CGGCATCCAATGGATCACAG	59.051	55.000	12.63	4.76	40.98	3.66
279	280	1.748244	CGGCATCCAATGGATCACAGT	60.748	52.381	12.63	0.00	40.98	3.55
283	284	3.429822	GCATCCAATGGATCACAGTTTGG	60.430	47.826	12.63	0.00	40.98	3.28
284	285	2.170166	TCCAATGGATCACAGTTTGGC	58.830	47.619	0.00	0.00	0.00	4.52
286	287	2.299582	CCAATGGATCACAGTTTGGCAA	59.700	45.455	0.00	0.00	0.00	4.52
287	288	3.319755	CAATGGATCACAGTTTGGCAAC	58.680	45.455	0.00	0.00	0.00	4.17
288	289	0.950836	TGGATCACAGTTTGGCAACG	59.049	50.000	0.00	0.00	38.03	4.10
289	290	0.240945	GGATCACAGTTTGGCAACGG	59.759	55.000	0.00	0.00	38.03	4.44
290	291	0.387239	GATCACAGTTTGGCAACGGC	60.387	55.000	0.00	0.00	38.03	5.68
291	292	2.128853	ATCACAGTTTGGCAACGGCG	62.129	55.000	4.80	4.80	42.47	6.46
292	293	3.591835	ACAGTTTGGCAACGGCGG	61.592	61.111	13.24	0.00	42.47	6.13
293	294	4.999939	CAGTTTGGCAACGGCGGC	63.000	66.667	13.24	5.58	42.47	6.53
309	310	4.021925	GCACGGCTCCTCCCTGTT	62.022	66.667	0.00	0.00	0.00	3.16
310	311	2.266055	CACGGCTCCTCCCTGTTC	59.734	66.667	0.00	0.00	0.00	3.18
311	312	2.120718	ACGGCTCCTCCCTGTTCT	59.879	61.111	0.00	0.00	0.00	3.01
312	313	1.536662	ACGGCTCCTCCCTGTTCTT	60.537	57.895	0.00	0.00	0.00	2.52
313	314	1.219393	CGGCTCCTCCCTGTTCTTC	59.781	63.158	0.00	0.00	0.00	2.87
314	315	1.544825	CGGCTCCTCCCTGTTCTTCA	61.545	60.000	0.00	0.00	0.00	3.02
315	316	0.251634	GGCTCCTCCCTGTTCTTCAG	59.748	60.000	0.00	0.00	43.27	3.02
316	317	1.270907	GCTCCTCCCTGTTCTTCAGA	58.729	55.000	0.00	0.00	46.27	3.27
317	318	1.836802	GCTCCTCCCTGTTCTTCAGAT	59.163	52.381	0.00	0.00	46.27	2.90
318	319	2.158971	GCTCCTCCCTGTTCTTCAGATC	60.159	54.545	0.00	0.00	46.27	2.75
319	320	2.433970	CTCCTCCCTGTTCTTCAGATCC	59.566	54.545	0.00	0.00	46.27	3.36
320	321	1.488393	CCTCCCTGTTCTTCAGATCCC	59.512	57.143	0.00	0.00	46.27	3.85
322	323	1.081174	TCCCTGTTCTTCAGATCCCCT	59.919	52.381	0.00	0.00	46.27	4.79
323	324	1.918957	CCCTGTTCTTCAGATCCCCTT	59.081	52.381	0.00	0.00	46.27	3.95
324	325	2.092699	CCCTGTTCTTCAGATCCCCTTC	60.093	54.545	0.00	0.00	46.27	3.46
325	326	2.092699	CCTGTTCTTCAGATCCCCTTCC	60.093	54.545	0.00	0.00	46.27	3.46
328	329	0.725133	TCTTCAGATCCCCTTCCCCT	59.275	55.000	0.00	0.00	0.00	4.79
329	330	1.082879	TCTTCAGATCCCCTTCCCCTT	59.917	52.381	0.00	0.00	0.00	3.95
330	331	1.492599	CTTCAGATCCCCTTCCCCTTC	59.507	57.143	0.00	0.00	0.00	3.46
332	333	0.327964	CAGATCCCCTTCCCCTTCCT	60.328	60.000	0.00	0.00	0.00	3.36
333	334	0.029577	AGATCCCCTTCCCCTTCCTC	60.030	60.000	0.00	0.00	0.00	3.71
334	335	1.006227	ATCCCCTTCCCCTTCCTCC	59.994	63.158	0.00	0.00	0.00	4.30
335	336	2.585523	ATCCCCTTCCCCTTCCTCCC	62.586	65.000	0.00	0.00	0.00	4.30
336	337	2.127297	CCCTTCCCCTTCCTCCCA	59.873	66.667	0.00	0.00	0.00	4.37
337	338	1.543896	CCCTTCCCCTTCCTCCCAA	60.544	63.158	0.00	0.00	0.00	4.12
338	339	0.926220	CCCTTCCCCTTCCTCCCAAT	60.926	60.000	0.00	0.00	0.00	3.16
341	342	1.925959	CTTCCCCTTCCTCCCAATTCT	59.074	52.381	0.00	0.00	0.00	2.40
342	343	2.074922	TCCCCTTCCTCCCAATTCTT	57.925	50.000	0.00	0.00	0.00	2.52
343	344	1.640670	TCCCCTTCCTCCCAATTCTTG	59.359	52.381	0.00	0.00	0.00	3.02
344	345	1.359130	CCCCTTCCTCCCAATTCTTGT	59.641	52.381	0.00	0.00	0.00	3.16
345	346	2.580783	CCCCTTCCTCCCAATTCTTGTA	59.419	50.000	0.00	0.00	0.00	2.41
347	348	3.621558	CCTTCCTCCCAATTCTTGTACC	58.378	50.000	0.00	0.00	0.00	3.34
348	349	3.267031	CCTTCCTCCCAATTCTTGTACCT	59.733	47.826	0.00	0.00	0.00	3.08
349	350	4.263949	CCTTCCTCCCAATTCTTGTACCTT	60.264	45.833	0.00	0.00	0.00	3.50
350	351	4.301072	TCCTCCCAATTCTTGTACCTTG	57.699	45.455	0.00	0.00	0.00	3.61
351	352	2.755103	CCTCCCAATTCTTGTACCTTGC	59.245	50.000	0.00	0.00	0.00	4.01
352	353	2.755103	CTCCCAATTCTTGTACCTTGCC	59.245	50.000	0.00	0.00	0.00	4.52
353	354	2.378547	TCCCAATTCTTGTACCTTGCCT	59.621	45.455	0.00	0.00	0.00	4.75
354	355	2.493278	CCCAATTCTTGTACCTTGCCTG	59.507	50.000	0.00	0.00	0.00	4.85
355	356	3.157087	CCAATTCTTGTACCTTGCCTGT	58.843	45.455	0.00	0.00	0.00	4.00
356	357	4.331968	CCAATTCTTGTACCTTGCCTGTA	58.668	43.478	0.00	0.00	0.00	2.74
357	358	4.764823	CCAATTCTTGTACCTTGCCTGTAA	59.235	41.667	0.00	0.00	0.00	2.41
358	359	5.418840	CCAATTCTTGTACCTTGCCTGTAAT	59.581	40.000	0.00	0.00	0.00	1.89
359	360	6.404734	CCAATTCTTGTACCTTGCCTGTAATC	60.405	42.308	0.00	0.00	0.00	1.75
360	361	4.901197	TCTTGTACCTTGCCTGTAATCA	57.099	40.909	0.00	0.00	0.00	2.57
361	362	4.575885	TCTTGTACCTTGCCTGTAATCAC	58.424	43.478	0.00	0.00	0.00	3.06
362	363	4.286032	TCTTGTACCTTGCCTGTAATCACT	59.714	41.667	0.00	0.00	0.00	3.41
363	364	5.482526	TCTTGTACCTTGCCTGTAATCACTA	59.517	40.000	0.00	0.00	0.00	2.74
364	365	5.080969	TGTACCTTGCCTGTAATCACTAC	57.919	43.478	0.00	0.00	0.00	2.73
365	366	4.775780	TGTACCTTGCCTGTAATCACTACT	59.224	41.667	0.00	0.00	0.00	2.57
366	367	4.207891	ACCTTGCCTGTAATCACTACTG	57.792	45.455	0.00	0.00	0.00	2.74
367	368	2.939103	CCTTGCCTGTAATCACTACTGC	59.061	50.000	0.00	0.00	32.68	4.40
368	369	3.369892	CCTTGCCTGTAATCACTACTGCT	60.370	47.826	0.00	0.00	33.03	4.24
369	370	4.141937	CCTTGCCTGTAATCACTACTGCTA	60.142	45.833	0.00	0.00	33.03	3.49
370	371	4.386867	TGCCTGTAATCACTACTGCTAC	57.613	45.455	0.00	0.00	33.03	3.58
371	372	3.132289	TGCCTGTAATCACTACTGCTACC	59.868	47.826	0.00	0.00	33.03	3.18
372	373	3.385111	GCCTGTAATCACTACTGCTACCT	59.615	47.826	0.00	0.00	0.00	3.08
373	374	4.737946	GCCTGTAATCACTACTGCTACCTG	60.738	50.000	0.00	0.00	0.00	4.00
374	375	4.645136	CCTGTAATCACTACTGCTACCTGA	59.355	45.833	0.00	0.00	0.00	3.86
375	376	5.127194	CCTGTAATCACTACTGCTACCTGAA	59.873	44.000	0.00	0.00	0.00	3.02
376	377	6.183360	CCTGTAATCACTACTGCTACCTGAAT	60.183	42.308	0.00	0.00	0.00	2.57
377	378	7.182817	TGTAATCACTACTGCTACCTGAATT	57.817	36.000	0.00	0.00	0.00	2.17
378	379	7.265673	TGTAATCACTACTGCTACCTGAATTC	58.734	38.462	0.00	0.00	0.00	2.17
379	380	4.371855	TCACTACTGCTACCTGAATTCG	57.628	45.455	0.04	0.00	0.00	3.34
380	381	3.762288	TCACTACTGCTACCTGAATTCGT	59.238	43.478	0.04	0.00	0.00	3.85
381	382	3.859961	CACTACTGCTACCTGAATTCGTG	59.140	47.826	0.04	0.00	0.00	4.35
382	383	3.762288	ACTACTGCTACCTGAATTCGTGA	59.238	43.478	0.04	0.00	0.00	4.35
383	384	3.238108	ACTGCTACCTGAATTCGTGAG	57.762	47.619	0.04	0.00	0.00	3.51
384	385	2.563179	ACTGCTACCTGAATTCGTGAGT	59.437	45.455	0.04	0.00	0.00	3.41
385	386	2.926200	CTGCTACCTGAATTCGTGAGTG	59.074	50.000	0.04	0.00	0.00	3.51
386	387	2.271800	GCTACCTGAATTCGTGAGTGG	58.728	52.381	0.04	0.00	0.00	4.00
387	388	2.094182	GCTACCTGAATTCGTGAGTGGA	60.094	50.000	0.04	0.00	0.00	4.02
388	389	2.751166	ACCTGAATTCGTGAGTGGAG	57.249	50.000	0.04	0.00	0.00	3.86
389	390	1.971357	ACCTGAATTCGTGAGTGGAGT	59.029	47.619	0.04	0.00	0.00	3.85
390	391	2.289072	ACCTGAATTCGTGAGTGGAGTG	60.289	50.000	0.04	0.00	0.00	3.51
391	392	1.728971	CTGAATTCGTGAGTGGAGTGC	59.271	52.381	0.04	0.00	0.00	4.40
392	393	1.344438	TGAATTCGTGAGTGGAGTGCT	59.656	47.619	0.04	0.00	0.00	4.40
393	394	2.560981	TGAATTCGTGAGTGGAGTGCTA	59.439	45.455	0.04	0.00	0.00	3.49
394	395	2.949451	ATTCGTGAGTGGAGTGCTAG	57.051	50.000	0.00	0.00	0.00	3.42
395	396	1.905637	TTCGTGAGTGGAGTGCTAGA	58.094	50.000	0.00	0.00	0.00	2.43
396	397	2.130272	TCGTGAGTGGAGTGCTAGAT	57.870	50.000	0.00	0.00	0.00	1.98
397	398	2.017782	TCGTGAGTGGAGTGCTAGATC	58.982	52.381	0.00	0.00	0.00	2.75
398	399	1.268285	CGTGAGTGGAGTGCTAGATCG	60.268	57.143	0.00	0.00	0.00	3.69
399	400	2.017782	GTGAGTGGAGTGCTAGATCGA	58.982	52.381	0.00	0.00	0.00	3.59
400	401	2.621055	GTGAGTGGAGTGCTAGATCGAT	59.379	50.000	0.00	0.00	0.00	3.59
401	402	3.067461	GTGAGTGGAGTGCTAGATCGATT	59.933	47.826	0.00	0.00	0.00	3.34
402	403	4.276183	GTGAGTGGAGTGCTAGATCGATTA	59.724	45.833	0.00	0.00	0.00	1.75
403	404	4.887655	TGAGTGGAGTGCTAGATCGATTAA	59.112	41.667	0.00	0.00	0.00	1.40
404	405	5.536538	TGAGTGGAGTGCTAGATCGATTAAT	59.463	40.000	0.00	0.00	0.00	1.40
405	406	6.715264	TGAGTGGAGTGCTAGATCGATTAATA	59.285	38.462	0.00	0.00	0.00	0.98
406	407	7.394641	TGAGTGGAGTGCTAGATCGATTAATAT	59.605	37.037	0.00	0.00	0.00	1.28
407	408	8.809468	AGTGGAGTGCTAGATCGATTAATATA	57.191	34.615	0.00	0.00	0.00	0.86
408	409	8.679100	AGTGGAGTGCTAGATCGATTAATATAC	58.321	37.037	0.00	0.00	0.00	1.47
409	410	7.916450	GTGGAGTGCTAGATCGATTAATATACC	59.084	40.741	0.00	0.00	0.00	2.73
410	411	7.614192	TGGAGTGCTAGATCGATTAATATACCA	59.386	37.037	0.00	1.74	0.00	3.25
411	412	8.467598	GGAGTGCTAGATCGATTAATATACCAA	58.532	37.037	0.00	0.00	0.00	3.67
413	414	9.809096	AGTGCTAGATCGATTAATATACCAATG	57.191	33.333	0.00	0.00	0.00	2.82
414	415	9.035607	GTGCTAGATCGATTAATATACCAATGG	57.964	37.037	0.00	0.00	0.00	3.16
415	416	8.204160	TGCTAGATCGATTAATATACCAATGGG	58.796	37.037	3.55	0.00	41.29	4.00
416	417	7.171678	GCTAGATCGATTAATATACCAATGGGC	59.828	40.741	3.55	0.00	37.90	5.36
417	418	7.200434	AGATCGATTAATATACCAATGGGCT	57.800	36.000	3.55	0.00	37.90	5.19
418	419	7.050377	AGATCGATTAATATACCAATGGGCTG	58.950	38.462	3.55	0.00	37.90	4.85
419	420	6.121776	TCGATTAATATACCAATGGGCTGT	57.878	37.500	3.55	0.00	37.90	4.40
420	421	6.539173	TCGATTAATATACCAATGGGCTGTT	58.461	36.000	3.55	0.00	37.90	3.16
421	422	7.681679	TCGATTAATATACCAATGGGCTGTTA	58.318	34.615	3.55	0.00	37.90	2.41
422	423	8.158132	TCGATTAATATACCAATGGGCTGTTAA	58.842	33.333	3.55	6.06	37.90	2.01
423	424	8.234546	CGATTAATATACCAATGGGCTGTTAAC	58.765	37.037	3.55	0.00	37.90	2.01
424	425	9.073475	GATTAATATACCAATGGGCTGTTAACA	57.927	33.333	8.28	8.28	37.90	2.41
425	426	6.959639	AATATACCAATGGGCTGTTAACAG	57.040	37.500	27.85	27.85	46.40	3.16
426	427	2.675658	ACCAATGGGCTGTTAACAGT	57.324	45.000	30.90	13.12	45.45	3.55
427	428	2.238521	ACCAATGGGCTGTTAACAGTG	58.761	47.619	30.90	21.85	45.45	3.66
428	429	1.067635	CCAATGGGCTGTTAACAGTGC	60.068	52.381	30.90	21.06	45.45	4.40
429	430	1.612950	CAATGGGCTGTTAACAGTGCA	59.387	47.619	30.90	9.35	45.45	4.57
430	431	1.993956	ATGGGCTGTTAACAGTGCAA	58.006	45.000	30.90	17.63	45.45	4.08
431	432	1.317613	TGGGCTGTTAACAGTGCAAG	58.682	50.000	30.90	11.05	45.45	4.01
432	433	0.598065	GGGCTGTTAACAGTGCAAGG	59.402	55.000	30.90	10.38	45.45	3.61
433	434	1.318576	GGCTGTTAACAGTGCAAGGT	58.681	50.000	30.90	0.00	45.45	3.50
434	435	1.266989	GGCTGTTAACAGTGCAAGGTC	59.733	52.381	30.90	15.08	45.45	3.85
435	436	1.946768	GCTGTTAACAGTGCAAGGTCA	59.053	47.619	30.90	0.00	45.45	4.02
436	437	2.031682	GCTGTTAACAGTGCAAGGTCAG	60.032	50.000	30.90	7.89	45.45	3.51
437	438	2.549754	CTGTTAACAGTGCAAGGTCAGG	59.450	50.000	24.70	0.00	39.09	3.86
438	439	2.171659	TGTTAACAGTGCAAGGTCAGGA	59.828	45.455	3.59	0.00	0.00	3.86
439	440	2.543777	TAACAGTGCAAGGTCAGGAC	57.456	50.000	0.00	0.00	0.00	3.85
440	441	0.546122	AACAGTGCAAGGTCAGGACA	59.454	50.000	1.41	0.00	0.00	4.02
441	442	0.179045	ACAGTGCAAGGTCAGGACAC	60.179	55.000	1.41	0.00	0.00	3.67
442	443	0.179048	CAGTGCAAGGTCAGGACACA	60.179	55.000	1.41	0.00	33.69	3.72
443	444	0.767375	AGTGCAAGGTCAGGACACAT	59.233	50.000	1.41	0.00	33.69	3.21
444	445	1.160137	GTGCAAGGTCAGGACACATC	58.840	55.000	1.41	0.00	0.00	3.06
445	446	0.764271	TGCAAGGTCAGGACACATCA	59.236	50.000	1.41	0.00	0.00	3.07
446	447	1.160137	GCAAGGTCAGGACACATCAC	58.840	55.000	1.41	0.00	0.00	3.06
447	448	1.543208	GCAAGGTCAGGACACATCACA	60.543	52.381	1.41	0.00	0.00	3.58
448	449	2.849942	CAAGGTCAGGACACATCACAA	58.150	47.619	1.41	0.00	0.00	3.33
449	450	3.213506	CAAGGTCAGGACACATCACAAA	58.786	45.455	1.41	0.00	0.00	2.83
450	451	3.576078	AGGTCAGGACACATCACAAAA	57.424	42.857	1.41	0.00	0.00	2.44
451	452	3.214328	AGGTCAGGACACATCACAAAAC	58.786	45.455	1.41	0.00	0.00	2.43
452	453	2.032030	GGTCAGGACACATCACAAAACG	60.032	50.000	1.41	0.00	0.00	3.60
453	454	2.869801	GTCAGGACACATCACAAAACGA	59.130	45.455	0.00	0.00	0.00	3.85
454	455	3.059597	GTCAGGACACATCACAAAACGAG	60.060	47.826	0.00	0.00	0.00	4.18
455	456	2.872245	CAGGACACATCACAAAACGAGT	59.128	45.455	0.00	0.00	0.00	4.18
456	457	4.055360	CAGGACACATCACAAAACGAGTA	58.945	43.478	0.00	0.00	0.00	2.59
457	458	4.150627	CAGGACACATCACAAAACGAGTAG	59.849	45.833	0.00	0.00	0.00	2.57
458	459	3.432252	GGACACATCACAAAACGAGTAGG	59.568	47.826	0.00	0.00	0.00	3.18
459	460	4.056050	GACACATCACAAAACGAGTAGGT	58.944	43.478	0.00	0.00	0.00	3.08
460	461	3.807622	ACACATCACAAAACGAGTAGGTG	59.192	43.478	0.00	0.00	0.00	4.00
461	462	3.807622	CACATCACAAAACGAGTAGGTGT	59.192	43.478	0.00	0.00	0.00	4.16
462	463	4.986034	CACATCACAAAACGAGTAGGTGTA	59.014	41.667	0.00	0.00	0.00	2.90
463	464	5.464057	CACATCACAAAACGAGTAGGTGTAA	59.536	40.000	0.00	0.00	0.00	2.41
464	465	5.464389	ACATCACAAAACGAGTAGGTGTAAC	59.536	40.000	0.00	0.00	0.00	2.50
465	466	4.043750	TCACAAAACGAGTAGGTGTAACG	58.956	43.478	0.00	0.00	38.12	3.18
466	467	4.043750	CACAAAACGAGTAGGTGTAACGA	58.956	43.478	0.00	0.00	38.12	3.85
467	468	4.044426	ACAAAACGAGTAGGTGTAACGAC	58.956	43.478	0.00	0.00	38.12	4.34
468	469	3.988379	AAACGAGTAGGTGTAACGACA	57.012	42.857	0.00	0.00	38.12	4.35
491	492	7.557036	CACTTGTGTGTCATTCATGTATTTG	57.443	36.000	0.00	0.00	39.24	2.32
492	493	7.140705	CACTTGTGTGTCATTCATGTATTTGT	58.859	34.615	0.00	0.00	39.24	2.83
493	494	7.648908	CACTTGTGTGTCATTCATGTATTTGTT	59.351	33.333	0.00	0.00	39.24	2.83
494	495	8.196771	ACTTGTGTGTCATTCATGTATTTGTTT	58.803	29.630	0.00	0.00	0.00	2.83
495	496	8.572828	TTGTGTGTCATTCATGTATTTGTTTC	57.427	30.769	0.00	0.00	0.00	2.78
496	497	6.855403	TGTGTGTCATTCATGTATTTGTTTCG	59.145	34.615	0.00	0.00	0.00	3.46
497	498	6.855914	GTGTGTCATTCATGTATTTGTTTCGT	59.144	34.615	0.00	0.00	0.00	3.85
498	499	7.059488	GTGTGTCATTCATGTATTTGTTTCGTC	59.941	37.037	0.00	0.00	0.00	4.20
499	500	7.075121	GTGTCATTCATGTATTTGTTTCGTCA	58.925	34.615	0.00	0.00	0.00	4.35
500	501	7.269084	GTGTCATTCATGTATTTGTTTCGTCAG	59.731	37.037	0.00	0.00	0.00	3.51
501	502	6.742718	GTCATTCATGTATTTGTTTCGTCAGG	59.257	38.462	0.00	0.00	0.00	3.86
502	503	4.678509	TCATGTATTTGTTTCGTCAGGC	57.321	40.909	0.00	0.00	0.00	4.85
503	504	4.323417	TCATGTATTTGTTTCGTCAGGCT	58.677	39.130	0.00	0.00	0.00	4.58
504	505	4.391830	TCATGTATTTGTTTCGTCAGGCTC	59.608	41.667	0.00	0.00	0.00	4.70
505	506	3.734463	TGTATTTGTTTCGTCAGGCTCA	58.266	40.909	0.00	0.00	0.00	4.26
506	507	3.745975	TGTATTTGTTTCGTCAGGCTCAG	59.254	43.478	0.00	0.00	0.00	3.35
507	508	2.325583	TTTGTTTCGTCAGGCTCAGT	57.674	45.000	0.00	0.00	0.00	3.41
508	509	2.325583	TTGTTTCGTCAGGCTCAGTT	57.674	45.000	0.00	0.00	0.00	3.16
509	510	1.581934	TGTTTCGTCAGGCTCAGTTG	58.418	50.000	0.00	0.00	0.00	3.16
510	511	1.138069	TGTTTCGTCAGGCTCAGTTGA	59.862	47.619	0.00	0.00	0.00	3.18
511	512	2.210116	GTTTCGTCAGGCTCAGTTGAA	58.790	47.619	0.00	0.00	0.00	2.69
512	513	2.612212	GTTTCGTCAGGCTCAGTTGAAA	59.388	45.455	0.00	0.00	0.00	2.69
513	514	2.613026	TCGTCAGGCTCAGTTGAAAA	57.387	45.000	0.00	0.00	0.00	2.29
514	515	2.912771	TCGTCAGGCTCAGTTGAAAAA	58.087	42.857	0.00	0.00	0.00	1.94
515	516	3.476552	TCGTCAGGCTCAGTTGAAAAAT	58.523	40.909	0.00	0.00	0.00	1.82
516	517	4.637276	TCGTCAGGCTCAGTTGAAAAATA	58.363	39.130	0.00	0.00	0.00	1.40
517	518	5.245531	TCGTCAGGCTCAGTTGAAAAATAT	58.754	37.500	0.00	0.00	0.00	1.28
518	519	6.403049	TCGTCAGGCTCAGTTGAAAAATATA	58.597	36.000	0.00	0.00	0.00	0.86
519	520	6.876789	TCGTCAGGCTCAGTTGAAAAATATAA	59.123	34.615	0.00	0.00	0.00	0.98
520	521	7.552687	TCGTCAGGCTCAGTTGAAAAATATAAT	59.447	33.333	0.00	0.00	0.00	1.28
521	522	8.826710	CGTCAGGCTCAGTTGAAAAATATAATA	58.173	33.333	0.00	0.00	0.00	0.98
599	600	1.906105	TAGGCGTCCCCTGCGAATTT	61.906	55.000	0.00	0.00	45.91	1.82
602	603	1.078426	CGTCCCCTGCGAATTTCCT	60.078	57.895	0.00	0.00	0.00	3.36
603	604	0.676782	CGTCCCCTGCGAATTTCCTT	60.677	55.000	0.00	0.00	0.00	3.36
604	605	1.545841	GTCCCCTGCGAATTTCCTTT	58.454	50.000	0.00	0.00	0.00	3.11
605	606	1.472878	GTCCCCTGCGAATTTCCTTTC	59.527	52.381	0.00	0.00	0.00	2.62
606	607	0.817654	CCCCTGCGAATTTCCTTTCC	59.182	55.000	0.00	0.00	0.00	3.13
607	608	1.616994	CCCCTGCGAATTTCCTTTCCT	60.617	52.381	0.00	0.00	0.00	3.36
619	620	1.202964	TCCTTTCCTTTTCCCCGTTCC	60.203	52.381	0.00	0.00	0.00	3.62
671	672	2.833913	CCATTCCCCTGATCCCCCG	61.834	68.421	0.00	0.00	0.00	5.73
1375	1389	1.020437	GATCTGCTTGCCTGGCTTAC	58.980	55.000	21.03	9.22	0.00	2.34
1487	1501	2.047061	TCTAGTTGGTGCCTGTCAGTT	58.953	47.619	0.00	0.00	0.00	3.16
1503	1517	6.127054	CCTGTCAGTTGTAGATCCAGGAATTA	60.127	42.308	0.00	0.00	40.29	1.40
1532	1547	2.164338	GGGGCGAAACATTTAAGGTCA	58.836	47.619	0.00	0.00	0.00	4.02
1535	1550	4.322424	GGGGCGAAACATTTAAGGTCAAAT	60.322	41.667	0.00	0.00	0.00	2.32
1716	1733	5.365021	AAATGCCACAGAGAGCTACTAAT	57.635	39.130	0.00	0.00	0.00	1.73
1722	1739	5.186797	GCCACAGAGAGCTACTAATATGGAT	59.813	44.000	12.25	0.00	0.00	3.41
1733	1750	2.191128	AATATGGATTCCCGCTGCTC	57.809	50.000	0.00	0.00	34.29	4.26
1811	1829	3.424703	ACCAGTGAACAAGCTGCATATT	58.575	40.909	1.02	0.00	0.00	1.28
2084	2108	5.824624	TGAGAAAACTCTTTCAACTGATGCT	59.175	36.000	0.00	0.00	42.99	3.79
2115	2139	4.493547	TGACAAAGTCAAAGCAAGTTTGG	58.506	39.130	0.00	0.00	45.05	3.28
2127	2151	2.159517	GCAAGTTTGGTGAGCCGATAAG	60.160	50.000	0.00	0.00	37.67	1.73
2203	2508	3.123621	GTGAGACTATCGCAACCACAAAG	59.876	47.826	0.00	0.00	38.38	2.77
2308	2617	4.771577	TGGGAAAATAGATGCAAGCTCAAA	59.228	37.500	0.00	0.00	30.71	2.69
2375	2691	8.037166	TCTAGACTCGCAATGCATATCAATAAT	58.963	33.333	5.91	0.00	0.00	1.28
2407	2723	9.042008	TGAAGTCTTACTAAGTTGATTGTTCAC	57.958	33.333	0.00	0.00	0.00	3.18
2447	2767	6.908825	TCAAGAACCTTGAATATTTCAACCG	58.091	36.000	6.91	0.00	44.21	4.44
2452	2772	7.446013	AGAACCTTGAATATTTCAACCGTGTAA	59.554	33.333	0.00	0.00	44.21	2.41
2472	2792	6.650390	GTGTAATGATGGAAGCCAATGTTTTT	59.350	34.615	0.00	0.00	36.95	1.94
2558	2879	1.669211	GGCGACGCTTTAGACAGACTT	60.669	52.381	20.77	0.00	0.00	3.01
2563	2884	4.386049	CGACGCTTTAGACAGACTTTGAAT	59.614	41.667	0.00	0.00	0.00	2.57
2589	2910	3.220110	TGGGCAGTAGAATAGAGTACCG	58.780	50.000	0.00	0.00	0.00	4.02
2625	2946	8.157476	ACATACATACCTTGATTCTAATCCACC	58.843	37.037	0.41	0.00	34.50	4.61
2759	3081	5.296531	TGTGCATAGCATAACACATAACAGG	59.703	40.000	0.00	0.00	41.91	4.00
2826	3148	1.151587	AGCAAAGGGAGGGGAAGGA	60.152	57.895	0.00	0.00	0.00	3.36
3121	3694	1.412079	TGCATGCTCTGGTTTTGGTT	58.588	45.000	20.33	0.00	0.00	3.67
3122	3695	1.340889	TGCATGCTCTGGTTTTGGTTC	59.659	47.619	20.33	0.00	0.00	3.62
3127	3700	2.155279	GCTCTGGTTTTGGTTCTCTCC	58.845	52.381	0.00	0.00	0.00	3.71
3144	3717	2.114506	TCTCCCTCTTTCTTTCCCCTCT	59.885	50.000	0.00	0.00	0.00	3.69
3152	3725	5.866207	TCTTTCTTTCCCCTCTTGTAACTC	58.134	41.667	0.00	0.00	0.00	3.01
3159	3732	3.006537	TCCCCTCTTGTAACTCTTTCACG	59.993	47.826	0.00	0.00	0.00	4.35
3178	3751	0.467290	GTGTGAGCCCAGTTTTCCCA	60.467	55.000	0.00	0.00	0.00	4.37
3180	3753	0.467290	GTGAGCCCAGTTTTCCCACA	60.467	55.000	0.00	0.00	0.00	4.17
3199	3772	3.850098	CTTGTGTTCCCGCCCAGCT	62.850	63.158	0.00	0.00	0.00	4.24
3209	3783	2.440599	GCCCAGCTCCTTTTCCCA	59.559	61.111	0.00	0.00	0.00	4.37
3228	3802	2.307098	CCACCAGAAATCTCTGTTCCCT	59.693	50.000	0.00	0.00	46.71	4.20
3276	3851	0.734889	CACTAAAGCGCCAATCAGGG	59.265	55.000	2.29	0.00	38.09	4.45
3322	3918	5.054477	GCTTTAATGTCTATAAGGCGGACA	58.946	41.667	0.00	0.00	42.85	4.02
3482	4090	7.094463	CCTTGCTGGAATATTCTCATTCATACC	60.094	40.741	14.95	0.00	36.77	2.73
3487	4095	5.352569	GGAATATTCTCATTCATACCAGGCG	59.647	44.000	14.95	0.00	36.77	5.52
3610	4220	9.282247	CAATCATTTTCATTGCACTTACTACTC	57.718	33.333	0.00	0.00	0.00	2.59
3646	4256	2.129607	GTTGCAATGCTTGTGACAAGG	58.870	47.619	25.00	10.66	0.00	3.61
3822	4631	5.780282	TGTTCTATAATGAGATCCCCATCGT	59.220	40.000	0.00	0.00	33.75	3.73
3927	4738	5.465532	TTTTGGCATGATGCTTTTGTAGA	57.534	34.783	17.84	0.00	44.28	2.59
3959	4771	3.884895	TCCTTTCACAAGAAGCACTGAA	58.115	40.909	0.00	0.00	34.71	3.02
4205	5077	4.446371	CATCATACCCTTGACCTCTCAAC	58.554	47.826	0.00	0.00	32.68	3.18
4349	5227	2.728690	TCACAATGACAGCCATTTGC	57.271	45.000	0.00	0.00	42.55	3.68
4350	5228	1.273048	TCACAATGACAGCCATTTGCC	59.727	47.619	0.00	0.00	42.55	4.52
4465	5343	4.087907	TGACAAGCCATTTGATGATTCCA	58.912	39.130	0.00	0.00	39.21	3.53
4552	5430	8.517878	CAATTCAACATCTCATGAAAACTACCT	58.482	33.333	0.00	0.00	38.88	3.08
4566	5444	7.871853	TGAAAACTACCTATGTTTCTTGAAGC	58.128	34.615	0.00	0.00	36.72	3.86
4579	5457	4.377839	TCTTGAAGCCTTAGACTCATCG	57.622	45.455	0.00	0.00	0.00	3.84
4586	5464	1.471676	CCTTAGACTCATCGTGGCCAC	60.472	57.143	26.78	26.78	0.00	5.01
4616	5494	4.706842	AGTCCTTGCCTAAGAAGAAACA	57.293	40.909	0.00	0.00	35.92	2.83
4638	5516	1.541147	CACAACACCCATAACAGCCAG	59.459	52.381	0.00	0.00	0.00	4.85
4644	5522	1.255882	CCCATAACAGCCAGCAAACA	58.744	50.000	0.00	0.00	0.00	2.83
4683	5561	3.097614	GCCCCTCTCAGTTTGAGTAGTA	58.902	50.000	6.03	0.00	44.58	1.82
4692	5570	8.703604	TCTCAGTTTGAGTAGTAATTGCATAC	57.296	34.615	6.03	0.00	44.58	2.39
4818	5696	7.119387	CCTTCTTCCAGTTTTTATACCCATCT	58.881	38.462	0.00	0.00	0.00	2.90
4833	5711	4.922206	ACCCATCTTGCTTGAAGACATTA	58.078	39.130	0.00	0.00	43.71	1.90
4834	5712	4.702131	ACCCATCTTGCTTGAAGACATTAC	59.298	41.667	0.00	0.00	43.71	1.89
4932	5810	4.286032	ACTGTACTCTAGCCAATCAAACCA	59.714	41.667	0.00	0.00	0.00	3.67
5020	6268	8.657729	GTTCAGTAATTGGCTAGAAAAGTAGAC	58.342	37.037	0.00	0.00	0.00	2.59
5063	6311	7.337942	AGAAGAAAATGGATTGGACAGTATCAC	59.662	37.037	0.00	0.00	0.00	3.06
5081	6329	0.837272	ACTGTGTACCTGCTGGTTGT	59.163	50.000	21.33	9.37	46.05	3.32
5118	6366	2.042686	ACTGCAACTCTCAGTTTGCA	57.957	45.000	13.65	13.65	41.61	4.08
5119	6367	2.579873	ACTGCAACTCTCAGTTTGCAT	58.420	42.857	14.43	5.41	41.61	3.96
5184	6432	0.955919	CCCGGGACTGCTTCTTGTTC	60.956	60.000	18.48	0.00	0.00	3.18
5185	6433	0.250295	CCGGGACTGCTTCTTGTTCA	60.250	55.000	0.00	0.00	0.00	3.18
5193	6441	1.879380	TGCTTCTTGTTCACCCATTCG	59.121	47.619	0.00	0.00	0.00	3.34
5277	6525	0.319641	CGCCTAAGTTAGGGATCGCC	60.320	60.000	26.79	10.66	46.32	5.54
5301	6549	1.957113	GCTCTGTTGGGGATTTCCTGG	60.957	57.143	0.00	0.00	35.95	4.45
5307	6555	1.304134	GGGGATTTCCTGGTGCGTT	60.304	57.895	0.00	0.00	35.95	4.84
5334	6582	1.207488	TGGGTGTGGGATAAGCTGCT	61.207	55.000	0.00	0.00	0.00	4.24
5365	6613	2.939261	GCTTTGGGCTGCATGTGCT	61.939	57.895	6.55	0.00	42.66	4.40
5366	6614	1.669440	CTTTGGGCTGCATGTGCTT	59.331	52.632	6.55	0.00	42.66	3.91
5367	6615	0.669318	CTTTGGGCTGCATGTGCTTG	60.669	55.000	6.55	0.91	42.66	4.01
5368	6616	2.718747	TTTGGGCTGCATGTGCTTGC	62.719	55.000	6.55	10.12	42.66	4.01
5369	6617	3.379445	GGGCTGCATGTGCTTGCT	61.379	61.111	17.59	0.00	43.18	3.91
5370	6618	2.181021	GGCTGCATGTGCTTGCTC	59.819	61.111	17.59	8.70	43.18	4.26
5442	6932	4.534897	AGCCTTAGTTTAACTTCAGGCCTA	59.465	41.667	29.23	0.00	46.68	3.93
5443	6933	5.013808	AGCCTTAGTTTAACTTCAGGCCTAA	59.986	40.000	29.23	7.98	46.68	2.69
5532	7022	7.209475	TCTTTTCAGTTTTCATTCAATCCCAC	58.791	34.615	0.00	0.00	0.00	4.61
5544	7034	6.603201	TCATTCAATCCCACCAGAATAAGTTC	59.397	38.462	0.00	0.00	34.46	3.01
5574	7070	4.808558	CATGGGTACTGTTGACAAAATGG	58.191	43.478	0.00	0.00	0.00	3.16
5575	7071	4.171878	TGGGTACTGTTGACAAAATGGA	57.828	40.909	0.00	0.00	0.00	3.41
5582	7078	1.618343	GTTGACAAAATGGAGGGGGTG	59.382	52.381	0.00	0.00	0.00	4.61
5583	7079	1.153539	TGACAAAATGGAGGGGGTGA	58.846	50.000	0.00	0.00	0.00	4.02
5584	7080	1.075374	TGACAAAATGGAGGGGGTGAG	59.925	52.381	0.00	0.00	0.00	3.51
5585	7081	0.409484	ACAAAATGGAGGGGGTGAGG	59.591	55.000	0.00	0.00	0.00	3.86
5586	7082	0.324645	CAAAATGGAGGGGGTGAGGG	60.325	60.000	0.00	0.00	0.00	4.30
5587	7083	1.518431	AAAATGGAGGGGGTGAGGGG	61.518	60.000	0.00	0.00	0.00	4.79
5588	7084	3.990141	AATGGAGGGGGTGAGGGGG	62.990	68.421	0.00	0.00	0.00	5.40
5760	7256	4.016113	GCTAGGCGTTAATTGACCAAAG	57.984	45.455	0.00	0.00	0.00	2.77
5761	7257	3.730963	GCTAGGCGTTAATTGACCAAAGC	60.731	47.826	0.00	0.00	0.00	3.51
5762	7258	1.199097	AGGCGTTAATTGACCAAAGCG	59.801	47.619	0.00	0.00	31.06	4.68
5763	7259	0.981956	GCGTTAATTGACCAAAGCGC	59.018	50.000	0.00	0.00	36.97	5.92
5764	7260	1.664588	GCGTTAATTGACCAAAGCGCA	60.665	47.619	11.47	0.00	42.63	6.09
5765	7261	2.862512	CGTTAATTGACCAAAGCGCAT	58.137	42.857	11.47	0.00	0.00	4.73
5766	7262	2.593775	CGTTAATTGACCAAAGCGCATG	59.406	45.455	11.47	8.38	0.00	4.06
5767	7263	2.276472	TAATTGACCAAAGCGCATGC	57.724	45.000	11.47	7.91	43.24	4.06
5781	7277	2.693797	GCATGCTTATGCGCAGTTAT	57.306	45.000	18.32	0.10	44.10	1.89
5782	7278	2.313234	GCATGCTTATGCGCAGTTATG	58.687	47.619	18.32	15.92	44.10	1.90
5796	7292	4.864916	CAGTTATGCACAGATTAAGCGT	57.135	40.909	0.00	0.00	0.00	5.07
5797	7293	5.966636	CAGTTATGCACAGATTAAGCGTA	57.033	39.130	0.00	0.00	0.00	4.42
5798	7294	5.967469	CAGTTATGCACAGATTAAGCGTAG	58.033	41.667	0.00	0.00	32.03	3.51
5799	7295	5.520288	CAGTTATGCACAGATTAAGCGTAGT	59.480	40.000	0.00	0.00	32.03	2.73
5800	7296	6.036083	CAGTTATGCACAGATTAAGCGTAGTT	59.964	38.462	0.00	0.00	32.03	2.24
5801	7297	7.222031	CAGTTATGCACAGATTAAGCGTAGTTA	59.778	37.037	0.00	0.00	32.03	2.24
5802	7298	7.926555	AGTTATGCACAGATTAAGCGTAGTTAT	59.073	33.333	0.00	0.00	32.03	1.89
5803	7299	5.966636	TGCACAGATTAAGCGTAGTTATG	57.033	39.130	0.00	0.00	0.00	1.90
5804	7300	4.270084	TGCACAGATTAAGCGTAGTTATGC	59.730	41.667	0.00	0.00	38.47	3.14
5805	7301	4.606232	GCACAGATTAAGCGTAGTTATGCG	60.606	45.833	0.00	0.00	42.84	4.73
5823	7319	1.201332	GCAATGCGTTTTGCCAACG	59.799	52.632	12.66	12.66	44.94	4.10
5828	7324	4.838959	CGTTTTGCCAACGCCTAG	57.161	55.556	5.44	0.00	36.82	3.02
5829	7325	2.240230	CGTTTTGCCAACGCCTAGA	58.760	52.632	5.44	0.00	36.82	2.43
5830	7326	0.165944	CGTTTTGCCAACGCCTAGAG	59.834	55.000	5.44	0.00	36.82	2.43
5831	7327	0.109735	GTTTTGCCAACGCCTAGAGC	60.110	55.000	0.00	0.00	38.52	4.09
5832	7328	1.241315	TTTTGCCAACGCCTAGAGCC	61.241	55.000	0.00	0.00	38.78	4.70
5833	7329	2.124507	TTTGCCAACGCCTAGAGCCT	62.125	55.000	0.00	0.00	38.78	4.58
5834	7330	1.261938	TTGCCAACGCCTAGAGCCTA	61.262	55.000	0.00	0.00	38.78	3.93
5835	7331	1.068250	GCCAACGCCTAGAGCCTAG	59.932	63.158	0.00	3.06	38.78	3.02
5836	7332	1.742768	CCAACGCCTAGAGCCTAGG	59.257	63.158	18.85	18.85	38.78	3.02
5837	7333	1.043673	CCAACGCCTAGAGCCTAGGT	61.044	60.000	22.04	7.50	38.78	3.08
5839	7335	4.261701	CGCCTAGAGCCTAGGTGT	57.738	61.111	23.36	0.00	39.65	4.16
5840	7336	1.736586	CGCCTAGAGCCTAGGTGTG	59.263	63.158	23.36	13.81	39.65	3.82
5841	7337	1.443828	GCCTAGAGCCTAGGTGTGC	59.556	63.158	22.04	9.78	37.06	4.57
5842	7338	1.045911	GCCTAGAGCCTAGGTGTGCT	61.046	60.000	22.04	0.00	41.42	4.40
5843	7339	1.490574	CCTAGAGCCTAGGTGTGCTT	58.509	55.000	11.31	0.00	38.11	3.91
5844	7340	2.667470	CCTAGAGCCTAGGTGTGCTTA	58.333	52.381	11.31	0.00	38.11	3.09
5845	7341	3.031736	CCTAGAGCCTAGGTGTGCTTAA	58.968	50.000	11.31	0.00	38.11	1.85
5846	7342	3.068873	CCTAGAGCCTAGGTGTGCTTAAG	59.931	52.174	11.31	0.00	38.11	1.85
5847	7343	1.208293	AGAGCCTAGGTGTGCTTAAGC	59.792	52.381	20.84	20.84	38.11	3.09
5848	7344	0.108138	AGCCTAGGTGTGCTTAAGCG	60.108	55.000	21.97	6.66	45.83	4.68
5858	7354	1.852942	TGCTTAAGCGCTCGATTAGG	58.147	50.000	21.97	0.11	45.83	2.69
5859	7355	0.509070	GCTTAAGCGCTCGATTAGGC	59.491	55.000	12.06	16.07	40.63	3.93
5960	7456	3.970610	CACACTTCGCTTCTCATGTTTTG	59.029	43.478	0.00	0.00	0.00	2.44
6573	8289	6.391227	AACAAACAGTGGAAACTATTCTGG	57.609	37.500	0.00	0.00	35.79	3.86
6835	8731	3.914713	ACAGGTGGGGGCTTTGGG	61.915	66.667	0.00	0.00	0.00	4.12
6922	8818	3.449746	AATAGTGGCCCAGTTGCTAAA	57.550	42.857	0.00	0.00	0.00	1.85
7011	8907	1.153549	CTAGGGTGACTGCGAAGGC	60.154	63.158	0.00	0.00	40.52	4.35
7345	9241	5.948758	TGCAAACATGGATAAAGATACCACA	59.051	36.000	0.00	0.00	36.49	4.17
7561	9458	2.472695	TACTTGCGCTGAAATCTGGT	57.527	45.000	9.73	0.00	0.00	4.00
7627	9524	9.191995	AGCTCAAGTTTGTTAAAAATAAATCCG	57.808	29.630	0.00	0.00	0.00	4.18
7975	9872	5.445964	TGTGAGTATAGATACCTGCTGTCA	58.554	41.667	0.00	0.00	33.79	3.58
8041	9938	0.918310	AAGAGGCTGGCCAGGAGATT	60.918	55.000	33.46	0.78	38.92	2.40
8296	10199	0.902516	AGGACGCTTCAGGCTCTTCT	60.903	55.000	0.00	0.00	39.13	2.85
8368	10274	2.109517	CTGGACAGAGTGTGCCAGCT	62.110	60.000	14.65	0.00	37.97	4.24
8386	10292	3.698040	CAGCTTCCAACAATTCCTATGCT	59.302	43.478	0.00	0.00	0.00	3.79
8680	10586	3.749064	GCGAGAGACTGTCCGGCA	61.749	66.667	3.76	0.00	0.00	5.69
8761	10667	3.523564	ACAGGCAATCCTATGTTGGTAGT	59.476	43.478	0.00	0.00	41.93	2.73
8837	10743	6.593770	TGTAGTATTTTCATGTACCTGCACTG	59.406	38.462	0.00	0.00	0.00	3.66
8848	10754	1.521450	CCTGCACTGCTTGGTCTTGG	61.521	60.000	1.98	0.00	0.00	3.61
8970	10876	4.039609	GGCTCCATGGAATCCTTAATTTGG	59.960	45.833	17.00	0.00	0.00	3.28
8974	10880	7.419403	GCTCCATGGAATCCTTAATTTGGAAAT	60.419	37.037	17.00	0.00	33.41	2.17
8977	10883	9.465199	CCATGGAATCCTTAATTTGGAAATTTT	57.535	29.630	5.56	0.00	39.24	1.82
9049	10964	3.064900	ACCTGAGAGCAAAGAATCCAC	57.935	47.619	0.00	0.00	0.00	4.02
9063	10978	7.533426	CAAAGAATCCACTCTCAAACATAAGG	58.467	38.462	0.00	0.00	0.00	2.69
9070	10985	5.396772	CCACTCTCAAACATAAGGGCATCTA	60.397	44.000	0.00	0.00	0.00	1.98
9112	11027	7.686438	TGCATCTTCTTTGTACAATACACAT	57.314	32.000	9.56	0.00	38.63	3.21
9119	11034	7.661127	TCTTTGTACAATACACATACCACAC	57.339	36.000	9.56	0.00	38.63	3.82
9234	12318	7.678947	ACATTAATCAAACCAAGAGAGACTG	57.321	36.000	0.00	0.00	0.00	3.51
9236	12320	4.363991	AATCAAACCAAGAGAGACTGCT	57.636	40.909	0.00	0.00	0.00	4.24
9322	12470	0.029300	GGCATTGCGCATAACACGAT	59.971	50.000	12.75	0.00	45.17	3.73
9336	12484	3.435915	CGATTGCGTTTTGTGCCG	58.564	55.556	0.00	0.00	0.00	5.69
9399	12547	1.474330	CCCCCTCAGCATTTGGTAAC	58.526	55.000	0.00	0.00	0.00	2.50
9401	12549	1.339631	CCCCTCAGCATTTGGTAACGA	60.340	52.381	0.00	0.00	42.51	3.85
9405	12553	1.349688	TCAGCATTTGGTAACGACCCT	59.650	47.619	0.00	0.00	46.32	4.34
9407	12555	2.936498	CAGCATTTGGTAACGACCCTAG	59.064	50.000	0.00	0.00	46.32	3.02
9424	12572	6.352051	CGACCCTAGAGCCATAGTATAGTACT	60.352	46.154	0.00	0.00	42.68	2.73
9460	12609	4.688021	GCTCTTATATTATGAGGCGGAGG	58.312	47.826	0.00	0.00	32.35	4.30
9467	12616	0.554305	TATGAGGCGGAGGGAGTACA	59.446	55.000	0.00	0.00	0.00	2.90
9485	12634	5.661458	AGTACATCCTAATGTGTTCTTCCG	58.339	41.667	0.00	0.00	45.72	4.30
9493	12642	6.070424	TCCTAATGTGTTCTTCCGGTTCTAAT	60.070	38.462	0.00	0.00	0.00	1.73
9501	12650	4.755411	TCTTCCGGTTCTAATAGTGCTTG	58.245	43.478	0.00	0.00	0.00	4.01
9507	12694	4.876107	CGGTTCTAATAGTGCTTGGTGATT	59.124	41.667	0.00	0.00	0.00	2.57
9513	12700	4.708726	ATAGTGCTTGGTGATTCAAAGC	57.291	40.909	13.73	13.73	0.00	3.51
9518	12705	1.531739	TTGGTGATTCAAAGCGGCCC	61.532	55.000	0.00	0.00	0.00	5.80
9555	12743	0.606673	AAGGTTTCTTCGCTGCCCTC	60.607	55.000	0.00	0.00	0.00	4.30
9592	12780	0.952984	GTCTGTCTGGCAGGTGCTTC	60.953	60.000	15.73	0.00	45.08	3.86
9620	12808	8.773645	CATTTTCCTTTTACCTTGGATGTTTTC	58.226	33.333	0.00	0.00	0.00	2.29
9657	12851	4.026052	AGGGATAAAACCTTCTGCATTGG	58.974	43.478	0.00	0.00	33.64	3.16
9680	12874	4.829064	TGGTGCACACAACTCTTAATTC	57.171	40.909	20.43	0.00	33.30	2.17
9762	12958	4.072131	TGGCTACATGAAGGAAGACAAAC	58.928	43.478	0.00	0.00	0.00	2.93
9764	12960	3.125316	GCTACATGAAGGAAGACAAACCG	59.875	47.826	0.00	0.00	0.00	4.44

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.263895	TACCCTGGTACCTGCTTGAT	57.736	50.000	14.36	0.00	0.00	2.57
1	2	2.263895	ATACCCTGGTACCTGCTTGA	57.736	50.000	14.36	0.00	33.01	3.02
4	5	2.022330	AGGTAATACCCTGGTACCTGCT	60.022	50.000	14.36	3.13	44.75	4.24
6	7	2.970640	GGAGGTAATACCCTGGTACCTG	59.029	54.545	16.12	12.94	46.10	4.00
8	9	3.050523	TGGAGGTAATACCCTGGTACC	57.949	52.381	4.43	4.43	39.75	3.34
10	11	4.562934	TGATGGAGGTAATACCCTGGTA	57.437	45.455	5.71	0.00	39.75	3.25
11	12	3.431411	TGATGGAGGTAATACCCTGGT	57.569	47.619	5.71	0.00	39.75	4.00
12	13	3.973973	TCTTGATGGAGGTAATACCCTGG	59.026	47.826	5.71	0.00	39.75	4.45
13	14	4.040952	CCTCTTGATGGAGGTAATACCCTG	59.959	50.000	5.71	0.00	45.65	4.45
14	15	4.235372	CCTCTTGATGGAGGTAATACCCT	58.765	47.826	5.71	0.00	45.65	4.34
15	16	4.625607	CCTCTTGATGGAGGTAATACCC	57.374	50.000	5.71	0.00	45.65	3.69
26	27	1.452108	GTTCGGGCCCTCTTGATGG	60.452	63.158	22.43	0.54	0.00	3.51
27	28	1.452108	GGTTCGGGCCCTCTTGATG	60.452	63.158	22.43	1.43	0.00	3.07
28	29	0.326238	TAGGTTCGGGCCCTCTTGAT	60.326	55.000	22.43	3.70	33.35	2.57
29	30	0.976073	CTAGGTTCGGGCCCTCTTGA	60.976	60.000	22.43	6.61	33.35	3.02
31	32	0.031010	ATCTAGGTTCGGGCCCTCTT	60.031	55.000	22.43	9.21	33.35	2.85
32	33	0.858369	TATCTAGGTTCGGGCCCTCT	59.142	55.000	22.43	14.07	33.35	3.69
35	36	1.487558	TGTTTATCTAGGTTCGGGCCC	59.512	52.381	13.57	13.57	0.00	5.80
37	38	3.057734	CGATGTTTATCTAGGTTCGGGC	58.942	50.000	0.00	0.00	0.00	6.13
38	39	4.049186	CACGATGTTTATCTAGGTTCGGG	58.951	47.826	0.00	0.00	0.00	5.14
40	41	4.738740	GGACACGATGTTTATCTAGGTTCG	59.261	45.833	0.00	0.00	0.00	3.95
41	42	5.048507	GGGACACGATGTTTATCTAGGTTC	58.951	45.833	0.00	0.00	0.00	3.62
42	43	4.141779	GGGGACACGATGTTTATCTAGGTT	60.142	45.833	0.00	0.00	0.00	3.50
43	44	3.387050	GGGGACACGATGTTTATCTAGGT	59.613	47.826	0.00	0.00	0.00	3.08
44	45	3.641906	AGGGGACACGATGTTTATCTAGG	59.358	47.826	0.00	0.00	0.00	3.02
46	47	4.100498	GGAAGGGGACACGATGTTTATCTA	59.900	45.833	0.00	0.00	0.00	1.98
48	49	3.118371	AGGAAGGGGACACGATGTTTATC	60.118	47.826	0.00	0.00	0.00	1.75
49	50	2.844348	AGGAAGGGGACACGATGTTTAT	59.156	45.455	0.00	0.00	0.00	1.40
50	51	2.235402	GAGGAAGGGGACACGATGTTTA	59.765	50.000	0.00	0.00	0.00	2.01
51	52	1.003233	GAGGAAGGGGACACGATGTTT	59.997	52.381	0.00	0.00	0.00	2.83
54	55	0.978146	AGGAGGAAGGGGACACGATG	60.978	60.000	0.00	0.00	0.00	3.84
55	56	0.978146	CAGGAGGAAGGGGACACGAT	60.978	60.000	0.00	0.00	0.00	3.73
56	57	1.609501	CAGGAGGAAGGGGACACGA	60.610	63.158	0.00	0.00	0.00	4.35
59	60	1.151413	AGTAACAGGAGGAAGGGGACA	59.849	52.381	0.00	0.00	0.00	4.02
60	61	1.954035	AGTAACAGGAGGAAGGGGAC	58.046	55.000	0.00	0.00	0.00	4.46
63	64	2.565834	TCGAAAGTAACAGGAGGAAGGG	59.434	50.000	0.00	0.00	0.00	3.95
64	65	3.955650	TCGAAAGTAACAGGAGGAAGG	57.044	47.619	0.00	0.00	0.00	3.46
66	67	4.094476	AGGATCGAAAGTAACAGGAGGAA	58.906	43.478	0.00	0.00	0.00	3.36
68	69	4.473477	AAGGATCGAAAGTAACAGGAGG	57.527	45.455	0.00	0.00	0.00	4.30
69	70	6.267070	GTCTAAGGATCGAAAGTAACAGGAG	58.733	44.000	0.00	0.00	0.00	3.69
70	71	5.163683	CGTCTAAGGATCGAAAGTAACAGGA	60.164	44.000	0.00	0.00	0.00	3.86
71	72	5.035443	CGTCTAAGGATCGAAAGTAACAGG	58.965	45.833	0.00	0.00	0.00	4.00
72	73	4.499758	GCGTCTAAGGATCGAAAGTAACAG	59.500	45.833	0.00	0.00	0.00	3.16
73	74	4.082625	TGCGTCTAAGGATCGAAAGTAACA	60.083	41.667	0.00	0.00	0.00	2.41
74	75	4.264849	GTGCGTCTAAGGATCGAAAGTAAC	59.735	45.833	0.00	0.00	0.00	2.50
76	77	3.441222	TGTGCGTCTAAGGATCGAAAGTA	59.559	43.478	0.00	0.00	0.00	2.24
77	78	2.230508	TGTGCGTCTAAGGATCGAAAGT	59.769	45.455	0.00	0.00	0.00	2.66
79	80	2.230508	ACTGTGCGTCTAAGGATCGAAA	59.769	45.455	0.00	0.00	0.00	3.46
80	81	1.816835	ACTGTGCGTCTAAGGATCGAA	59.183	47.619	0.00	0.00	0.00	3.71
81	82	1.460504	ACTGTGCGTCTAAGGATCGA	58.539	50.000	0.00	0.00	0.00	3.59
82	83	2.186076	GAACTGTGCGTCTAAGGATCG	58.814	52.381	0.00	0.00	0.00	3.69
83	84	3.182967	CTGAACTGTGCGTCTAAGGATC	58.817	50.000	0.00	0.00	0.00	3.36
85	86	1.272490	CCTGAACTGTGCGTCTAAGGA	59.728	52.381	0.00	0.00	0.00	3.36
88	89	1.000506	GGTCCTGAACTGTGCGTCTAA	59.999	52.381	0.00	0.00	0.00	2.10
92	93	2.426023	GGGTCCTGAACTGTGCGT	59.574	61.111	0.00	0.00	0.00	5.24
93	94	2.358737	GGGGTCCTGAACTGTGCG	60.359	66.667	0.00	0.00	0.00	5.34
94	95	1.198759	TAGGGGGTCCTGAACTGTGC	61.199	60.000	0.00	0.00	44.61	4.57
95	96	0.613777	GTAGGGGGTCCTGAACTGTG	59.386	60.000	0.00	0.00	44.61	3.66
96	97	0.546988	GGTAGGGGGTCCTGAACTGT	60.547	60.000	0.00	0.00	44.61	3.55
97	98	0.252742	AGGTAGGGGGTCCTGAACTG	60.253	60.000	0.00	0.00	44.61	3.16
99	100	4.912897	AGGTAGGGGGTCCTGAAC	57.087	61.111	0.00	0.00	44.61	3.18
103	104	0.563672	GATCTCAGGTAGGGGGTCCT	59.436	60.000	0.00	0.00	46.96	3.85
104	105	0.563672	AGATCTCAGGTAGGGGGTCC	59.436	60.000	0.00	0.00	0.00	4.46
106	107	0.399233	GCAGATCTCAGGTAGGGGGT	60.399	60.000	0.00	0.00	0.00	4.95
107	108	1.124477	GGCAGATCTCAGGTAGGGGG	61.124	65.000	0.00	0.00	0.00	5.40
108	109	1.467678	CGGCAGATCTCAGGTAGGGG	61.468	65.000	0.00	0.00	0.00	4.79
109	110	1.467678	CCGGCAGATCTCAGGTAGGG	61.468	65.000	0.00	0.00	0.00	3.53
110	111	0.757188	ACCGGCAGATCTCAGGTAGG	60.757	60.000	0.00	5.34	32.76	3.18
111	112	1.115467	AACCGGCAGATCTCAGGTAG	58.885	55.000	0.00	0.00	34.35	3.18
112	113	1.568504	AAACCGGCAGATCTCAGGTA	58.431	50.000	0.00	0.00	34.35	3.08
113	114	0.693049	AAAACCGGCAGATCTCAGGT	59.307	50.000	0.00	9.88	36.66	4.00
114	115	1.089920	CAAAACCGGCAGATCTCAGG	58.910	55.000	0.00	1.03	0.00	3.86
115	116	1.734465	GTCAAAACCGGCAGATCTCAG	59.266	52.381	0.00	0.00	0.00	3.35
117	118	1.464997	GTGTCAAAACCGGCAGATCTC	59.535	52.381	0.00	0.00	0.00	2.75
119	120	0.521735	GGTGTCAAAACCGGCAGATC	59.478	55.000	0.00	0.00	0.00	2.75
121	122	4.150994	GGTGTCAAAACCGGCAGA	57.849	55.556	0.00	0.00	0.00	4.26
127	128	1.869132	GTAGGTGTCGGTGTCAAAACC	59.131	52.381	0.00	0.00	36.82	3.27
128	129	2.542595	CTGTAGGTGTCGGTGTCAAAAC	59.457	50.000	0.00	0.00	0.00	2.43
131	132	0.032952	GCTGTAGGTGTCGGTGTCAA	59.967	55.000	0.00	0.00	0.00	3.18
135	136	1.215647	GAGGCTGTAGGTGTCGGTG	59.784	63.158	0.00	0.00	0.00	4.94
138	139	2.202623	GCGAGGCTGTAGGTGTCG	60.203	66.667	0.00	0.00	0.00	4.35
169	170	4.700365	TGAGTCGGCTCGCGTGTG	62.700	66.667	13.21	0.69	44.48	3.82
170	171	1.929806	TATTGAGTCGGCTCGCGTGT	61.930	55.000	13.21	0.00	44.48	4.49
171	172	1.226575	TATTGAGTCGGCTCGCGTG	60.227	57.895	13.21	4.44	44.48	5.34
173	174	1.226575	TGTATTGAGTCGGCTCGCG	60.227	57.895	13.21	0.00	44.48	5.87
175	176	0.098200	TCGTGTATTGAGTCGGCTCG	59.902	55.000	13.21	0.00	44.48	5.03
177	178	1.174783	ACTCGTGTATTGAGTCGGCT	58.825	50.000	0.00	0.00	42.93	5.52
183	184	2.271800	GCCTTGGACTCGTGTATTGAG	58.728	52.381	0.00	0.00	39.40	3.02
184	185	1.066430	GGCCTTGGACTCGTGTATTGA	60.066	52.381	0.00	0.00	0.00	2.57
185	186	1.369625	GGCCTTGGACTCGTGTATTG	58.630	55.000	0.00	0.00	0.00	1.90
186	187	0.252197	GGGCCTTGGACTCGTGTATT	59.748	55.000	0.84	0.00	0.00	1.89
187	188	0.617820	AGGGCCTTGGACTCGTGTAT	60.618	55.000	0.00	0.00	0.00	2.29
189	190	2.526873	AGGGCCTTGGACTCGTGT	60.527	61.111	0.00	0.00	0.00	4.49
190	191	2.046892	CAGGGCCTTGGACTCGTG	60.047	66.667	1.32	0.00	0.00	4.35
191	192	2.203788	TCAGGGCCTTGGACTCGT	60.204	61.111	15.86	0.00	0.00	4.18
192	193	2.286523	ACTCAGGGCCTTGGACTCG	61.287	63.158	15.86	1.64	0.00	4.18
193	194	1.298014	CACTCAGGGCCTTGGACTC	59.702	63.158	15.86	0.00	0.00	3.36
194	195	2.227036	CCACTCAGGGCCTTGGACT	61.227	63.158	16.41	0.00	0.00	3.85
195	196	2.352805	CCACTCAGGGCCTTGGAC	59.647	66.667	16.41	0.00	0.00	4.02
204	205	4.742201	CCGTCACGCCCACTCAGG	62.742	72.222	0.00	0.00	37.03	3.86
205	206	3.991051	ACCGTCACGCCCACTCAG	61.991	66.667	0.00	0.00	0.00	3.35
221	222	0.531200	AGCGTAAGTAGGTGAGCCAC	59.469	55.000	0.00	0.00	41.68	5.01
224	225	0.815734	TGGAGCGTAAGTAGGTGAGC	59.184	55.000	0.00	0.00	41.68	4.26
225	226	2.093106	ACTGGAGCGTAAGTAGGTGAG	58.907	52.381	0.00	0.00	41.68	3.51
226	227	2.089980	GACTGGAGCGTAAGTAGGTGA	58.910	52.381	0.00	0.00	41.68	4.02
227	228	1.202154	CGACTGGAGCGTAAGTAGGTG	60.202	57.143	0.00	0.00	41.68	4.00
229	230	0.381089	CCGACTGGAGCGTAAGTAGG	59.619	60.000	1.72	1.72	37.49	3.18
230	231	0.248539	GCCGACTGGAGCGTAAGTAG	60.249	60.000	0.00	0.00	37.49	2.57
231	232	0.961857	TGCCGACTGGAGCGTAAGTA	60.962	55.000	0.00	0.00	37.49	2.24
233	234	0.872021	GATGCCGACTGGAGCGTAAG	60.872	60.000	0.00	0.00	37.49	2.34
235	236	2.004808	CTGATGCCGACTGGAGCGTA	62.005	60.000	0.00	0.00	37.49	4.42
236	237	3.362399	CTGATGCCGACTGGAGCGT	62.362	63.158	0.00	0.00	37.49	5.07
238	239	0.175760	TTACTGATGCCGACTGGAGC	59.824	55.000	0.00	0.00	37.49	4.70
239	240	1.804372	GCTTACTGATGCCGACTGGAG	60.804	57.143	0.00	0.00	37.49	3.86
240	241	0.175760	GCTTACTGATGCCGACTGGA	59.824	55.000	0.00	0.00	37.49	3.86
243	244	1.141881	CCGCTTACTGATGCCGACT	59.858	57.895	0.00	0.00	0.00	4.18
244	245	2.526120	GCCGCTTACTGATGCCGAC	61.526	63.158	0.00	0.00	0.00	4.79
245	246	2.202878	GCCGCTTACTGATGCCGA	60.203	61.111	0.00	0.00	0.00	5.54
246	247	1.835483	GATGCCGCTTACTGATGCCG	61.835	60.000	0.00	0.00	0.00	5.69
247	248	1.510480	GGATGCCGCTTACTGATGCC	61.510	60.000	0.00	0.00	0.00	4.40
248	249	0.815213	TGGATGCCGCTTACTGATGC	60.815	55.000	0.00	0.00	0.00	3.91
249	250	1.667236	TTGGATGCCGCTTACTGATG	58.333	50.000	0.00	0.00	0.00	3.07
250	251	2.224606	CATTGGATGCCGCTTACTGAT	58.775	47.619	0.00	0.00	0.00	2.90
251	252	1.667236	CATTGGATGCCGCTTACTGA	58.333	50.000	0.00	0.00	0.00	3.41
252	253	0.664761	CCATTGGATGCCGCTTACTG	59.335	55.000	0.00	0.00	0.00	2.74
253	254	0.546122	TCCATTGGATGCCGCTTACT	59.454	50.000	0.00	0.00	0.00	2.24
254	255	1.537202	GATCCATTGGATGCCGCTTAC	59.463	52.381	22.89	2.12	43.27	2.34
255	256	1.142667	TGATCCATTGGATGCCGCTTA	59.857	47.619	22.89	0.00	43.27	3.09
256	257	0.106569	TGATCCATTGGATGCCGCTT	60.107	50.000	22.89	0.00	43.27	4.68
257	258	0.820891	GTGATCCATTGGATGCCGCT	60.821	55.000	22.89	0.00	43.27	5.52
260	261	2.062971	ACTGTGATCCATTGGATGCC	57.937	50.000	22.89	12.60	43.27	4.40
261	262	3.429822	CCAAACTGTGATCCATTGGATGC	60.430	47.826	22.89	14.79	43.27	3.91
262	263	3.429822	GCCAAACTGTGATCCATTGGATG	60.430	47.826	22.89	10.66	43.27	3.51
263	264	2.762327	GCCAAACTGTGATCCATTGGAT	59.238	45.455	18.23	18.23	46.28	3.41
264	265	2.170166	GCCAAACTGTGATCCATTGGA	58.830	47.619	8.08	8.08	42.46	3.53
265	266	1.894466	TGCCAAACTGTGATCCATTGG	59.106	47.619	0.00	0.00	42.68	3.16
267	268	2.030007	CGTTGCCAAACTGTGATCCATT	60.030	45.455	0.00	0.00	33.87	3.16
268	269	1.541147	CGTTGCCAAACTGTGATCCAT	59.459	47.619	0.00	0.00	33.87	3.41
270	271	0.240945	CCGTTGCCAAACTGTGATCC	59.759	55.000	0.00	0.00	33.87	3.36
271	272	0.387239	GCCGTTGCCAAACTGTGATC	60.387	55.000	0.00	0.00	33.87	2.92
274	275	2.353376	CGCCGTTGCCAAACTGTG	60.353	61.111	0.00	0.00	33.87	3.66
276	277	4.999939	GCCGCCGTTGCCAAACTG	63.000	66.667	0.00	0.00	33.87	3.16
294	295	1.536662	AAGAACAGGGAGGAGCCGT	60.537	57.895	0.00	0.00	37.63	5.68
295	296	1.219393	GAAGAACAGGGAGGAGCCG	59.781	63.158	0.00	0.00	37.63	5.52
296	297	0.251634	CTGAAGAACAGGGAGGAGCC	59.748	60.000	0.00	0.00	42.39	4.70
297	298	1.270907	TCTGAAGAACAGGGAGGAGC	58.729	55.000	0.00	0.00	45.76	4.70
298	299	2.433970	GGATCTGAAGAACAGGGAGGAG	59.566	54.545	0.00	0.00	45.76	3.69
299	300	2.472029	GGATCTGAAGAACAGGGAGGA	58.528	52.381	0.00	0.00	45.76	3.71
300	301	1.488393	GGGATCTGAAGAACAGGGAGG	59.512	57.143	0.00	0.00	45.76	4.30
301	302	1.488393	GGGGATCTGAAGAACAGGGAG	59.512	57.143	0.00	0.00	45.76	4.30
303	304	1.589414	AGGGGATCTGAAGAACAGGG	58.411	55.000	0.00	0.00	45.76	4.45
304	305	2.092699	GGAAGGGGATCTGAAGAACAGG	60.093	54.545	0.00	0.00	45.76	4.00
305	306	2.092699	GGGAAGGGGATCTGAAGAACAG	60.093	54.545	0.00	0.00	46.97	3.16
307	308	1.213182	GGGGAAGGGGATCTGAAGAAC	59.787	57.143	0.00	0.00	0.00	3.01
308	309	1.082879	AGGGGAAGGGGATCTGAAGAA	59.917	52.381	0.00	0.00	0.00	2.52
309	310	0.725133	AGGGGAAGGGGATCTGAAGA	59.275	55.000	0.00	0.00	0.00	2.87
310	311	1.492599	GAAGGGGAAGGGGATCTGAAG	59.507	57.143	0.00	0.00	0.00	3.02
311	312	1.596496	GAAGGGGAAGGGGATCTGAA	58.404	55.000	0.00	0.00	0.00	3.02
312	313	0.327576	GGAAGGGGAAGGGGATCTGA	60.328	60.000	0.00	0.00	0.00	3.27
313	314	0.327964	AGGAAGGGGAAGGGGATCTG	60.328	60.000	0.00	0.00	0.00	2.90
314	315	0.029577	GAGGAAGGGGAAGGGGATCT	60.030	60.000	0.00	0.00	0.00	2.75
315	316	1.063070	GGAGGAAGGGGAAGGGGATC	61.063	65.000	0.00	0.00	0.00	3.36
316	317	1.006227	GGAGGAAGGGGAAGGGGAT	59.994	63.158	0.00	0.00	0.00	3.85
317	318	2.459710	GGAGGAAGGGGAAGGGGA	59.540	66.667	0.00	0.00	0.00	4.81
318	319	2.696504	GGGAGGAAGGGGAAGGGG	60.697	72.222	0.00	0.00	0.00	4.79
319	320	0.926220	ATTGGGAGGAAGGGGAAGGG	60.926	60.000	0.00	0.00	0.00	3.95
320	321	1.010795	AATTGGGAGGAAGGGGAAGG	58.989	55.000	0.00	0.00	0.00	3.46
322	323	2.042979	CAAGAATTGGGAGGAAGGGGAA	59.957	50.000	0.00	0.00	43.94	3.97
323	324	1.640670	CAAGAATTGGGAGGAAGGGGA	59.359	52.381	0.00	0.00	43.94	4.81
324	325	2.149973	CAAGAATTGGGAGGAAGGGG	57.850	55.000	0.00	0.00	43.94	4.79
336	337	6.151144	GTGATTACAGGCAAGGTACAAGAATT	59.849	38.462	0.00	0.00	0.00	2.17
337	338	5.648092	GTGATTACAGGCAAGGTACAAGAAT	59.352	40.000	0.00	0.00	0.00	2.40
338	339	5.001232	GTGATTACAGGCAAGGTACAAGAA	58.999	41.667	0.00	0.00	0.00	2.52
341	342	4.634012	AGTGATTACAGGCAAGGTACAA	57.366	40.909	0.00	0.00	0.00	2.41
342	343	4.775780	AGTAGTGATTACAGGCAAGGTACA	59.224	41.667	0.00	0.00	34.56	2.90
343	344	5.109903	CAGTAGTGATTACAGGCAAGGTAC	58.890	45.833	0.00	0.00	34.56	3.34
344	345	4.382685	GCAGTAGTGATTACAGGCAAGGTA	60.383	45.833	0.42	0.00	35.87	3.08
345	346	3.619979	GCAGTAGTGATTACAGGCAAGGT	60.620	47.826	0.42	0.00	35.87	3.50
347	348	3.866651	AGCAGTAGTGATTACAGGCAAG	58.133	45.455	0.42	0.00	37.32	4.01
348	349	3.981071	AGCAGTAGTGATTACAGGCAA	57.019	42.857	0.42	0.00	37.32	4.52
349	350	3.132289	GGTAGCAGTAGTGATTACAGGCA	59.868	47.826	0.42	0.00	37.32	4.75
350	351	3.385111	AGGTAGCAGTAGTGATTACAGGC	59.615	47.826	0.42	0.00	35.98	4.85
351	352	4.645136	TCAGGTAGCAGTAGTGATTACAGG	59.355	45.833	0.42	0.44	34.56	4.00
352	353	5.836821	TCAGGTAGCAGTAGTGATTACAG	57.163	43.478	0.42	1.09	34.56	2.74
353	354	6.791867	ATTCAGGTAGCAGTAGTGATTACA	57.208	37.500	0.42	0.00	34.56	2.41
354	355	6.418226	CGAATTCAGGTAGCAGTAGTGATTAC	59.582	42.308	6.22	3.21	0.00	1.89
355	356	6.096423	ACGAATTCAGGTAGCAGTAGTGATTA	59.904	38.462	6.22	0.00	0.00	1.75
356	357	5.105310	ACGAATTCAGGTAGCAGTAGTGATT	60.105	40.000	6.22	0.00	0.00	2.57
357	358	4.402793	ACGAATTCAGGTAGCAGTAGTGAT	59.597	41.667	6.22	0.00	0.00	3.06
358	359	3.762288	ACGAATTCAGGTAGCAGTAGTGA	59.238	43.478	6.22	0.00	0.00	3.41
359	360	3.859961	CACGAATTCAGGTAGCAGTAGTG	59.140	47.826	6.22	0.00	0.00	2.74
360	361	3.762288	TCACGAATTCAGGTAGCAGTAGT	59.238	43.478	6.22	0.00	0.00	2.73
361	362	4.142359	ACTCACGAATTCAGGTAGCAGTAG	60.142	45.833	6.22	0.00	0.00	2.57
362	363	3.762288	ACTCACGAATTCAGGTAGCAGTA	59.238	43.478	6.22	0.00	0.00	2.74
363	364	2.563179	ACTCACGAATTCAGGTAGCAGT	59.437	45.455	6.22	0.00	0.00	4.40
364	365	2.926200	CACTCACGAATTCAGGTAGCAG	59.074	50.000	6.22	0.00	0.00	4.24
365	366	2.353704	CCACTCACGAATTCAGGTAGCA	60.354	50.000	6.22	0.00	0.00	3.49
366	367	2.094182	TCCACTCACGAATTCAGGTAGC	60.094	50.000	6.22	0.00	0.00	3.58
367	368	3.193691	ACTCCACTCACGAATTCAGGTAG	59.806	47.826	6.22	0.00	0.00	3.18
368	369	3.056821	CACTCCACTCACGAATTCAGGTA	60.057	47.826	6.22	0.00	0.00	3.08
369	370	1.971357	ACTCCACTCACGAATTCAGGT	59.029	47.619	6.22	0.00	0.00	4.00
370	371	2.341257	CACTCCACTCACGAATTCAGG	58.659	52.381	6.22	0.00	0.00	3.86
371	372	1.728971	GCACTCCACTCACGAATTCAG	59.271	52.381	6.22	1.11	0.00	3.02
372	373	1.344438	AGCACTCCACTCACGAATTCA	59.656	47.619	6.22	0.00	0.00	2.57
373	374	2.086054	AGCACTCCACTCACGAATTC	57.914	50.000	0.00	0.00	0.00	2.17
374	375	2.826128	TCTAGCACTCCACTCACGAATT	59.174	45.455	0.00	0.00	0.00	2.17
375	376	2.447443	TCTAGCACTCCACTCACGAAT	58.553	47.619	0.00	0.00	0.00	3.34
376	377	1.905637	TCTAGCACTCCACTCACGAA	58.094	50.000	0.00	0.00	0.00	3.85
377	378	2.017782	GATCTAGCACTCCACTCACGA	58.982	52.381	0.00	0.00	0.00	4.35
378	379	1.268285	CGATCTAGCACTCCACTCACG	60.268	57.143	0.00	0.00	0.00	4.35
379	380	2.017782	TCGATCTAGCACTCCACTCAC	58.982	52.381	0.00	0.00	0.00	3.51
380	381	2.420058	TCGATCTAGCACTCCACTCA	57.580	50.000	0.00	0.00	0.00	3.41
381	382	5.440234	TTAATCGATCTAGCACTCCACTC	57.560	43.478	0.00	0.00	0.00	3.51
382	383	7.710676	ATATTAATCGATCTAGCACTCCACT	57.289	36.000	0.00	0.00	0.00	4.00
383	384	7.916450	GGTATATTAATCGATCTAGCACTCCAC	59.084	40.741	0.00	0.00	0.00	4.02
384	385	7.614192	TGGTATATTAATCGATCTAGCACTCCA	59.386	37.037	0.00	0.00	0.00	3.86
385	386	7.997482	TGGTATATTAATCGATCTAGCACTCC	58.003	38.462	0.00	0.00	0.00	3.85
387	388	9.809096	CATTGGTATATTAATCGATCTAGCACT	57.191	33.333	0.00	0.00	0.00	4.40
388	389	9.035607	CCATTGGTATATTAATCGATCTAGCAC	57.964	37.037	0.00	0.00	0.00	4.40
389	390	8.204160	CCCATTGGTATATTAATCGATCTAGCA	58.796	37.037	0.00	0.00	0.00	3.49
390	391	7.171678	GCCCATTGGTATATTAATCGATCTAGC	59.828	40.741	0.00	0.00	0.00	3.42
391	392	8.424918	AGCCCATTGGTATATTAATCGATCTAG	58.575	37.037	0.00	0.00	0.00	2.43
392	393	8.204160	CAGCCCATTGGTATATTAATCGATCTA	58.796	37.037	0.00	0.00	0.00	1.98
393	394	7.050377	CAGCCCATTGGTATATTAATCGATCT	58.950	38.462	0.00	0.00	0.00	2.75
394	395	6.823689	ACAGCCCATTGGTATATTAATCGATC	59.176	38.462	0.00	0.00	0.00	3.69
395	396	6.721318	ACAGCCCATTGGTATATTAATCGAT	58.279	36.000	1.20	0.00	0.00	3.59
396	397	6.121776	ACAGCCCATTGGTATATTAATCGA	57.878	37.500	1.20	0.00	0.00	3.59
397	398	6.817765	AACAGCCCATTGGTATATTAATCG	57.182	37.500	1.20	0.00	0.00	3.34
398	399	9.073475	TGTTAACAGCCCATTGGTATATTAATC	57.927	33.333	3.59	0.00	0.00	1.75
399	400	9.077885	CTGTTAACAGCCCATTGGTATATTAAT	57.922	33.333	22.03	0.00	37.15	1.40
400	401	8.458573	CTGTTAACAGCCCATTGGTATATTAA	57.541	34.615	22.03	0.00	37.15	1.40
402	403	6.959639	CTGTTAACAGCCCATTGGTATATT	57.040	37.500	22.03	0.00	37.15	1.28
417	418	2.171659	TCCTGACCTTGCACTGTTAACA	59.828	45.455	8.28	8.28	0.00	2.41
418	419	2.548480	GTCCTGACCTTGCACTGTTAAC	59.452	50.000	0.00	0.00	0.00	2.01
419	420	2.171659	TGTCCTGACCTTGCACTGTTAA	59.828	45.455	0.00	0.00	0.00	2.01
420	421	1.765904	TGTCCTGACCTTGCACTGTTA	59.234	47.619	0.00	0.00	0.00	2.41
421	422	0.546122	TGTCCTGACCTTGCACTGTT	59.454	50.000	0.00	0.00	0.00	3.16
422	423	0.179045	GTGTCCTGACCTTGCACTGT	60.179	55.000	0.00	0.00	0.00	3.55
423	424	0.179048	TGTGTCCTGACCTTGCACTG	60.179	55.000	0.00	0.00	0.00	3.66
424	425	0.767375	ATGTGTCCTGACCTTGCACT	59.233	50.000	0.00	0.00	0.00	4.40
425	426	1.160137	GATGTGTCCTGACCTTGCAC	58.840	55.000	0.00	0.00	0.00	4.57
426	427	0.764271	TGATGTGTCCTGACCTTGCA	59.236	50.000	0.00	0.00	0.00	4.08
427	428	1.160137	GTGATGTGTCCTGACCTTGC	58.840	55.000	0.00	0.00	0.00	4.01
428	429	2.549064	TGTGATGTGTCCTGACCTTG	57.451	50.000	0.00	0.00	0.00	3.61
429	430	3.576078	TTTGTGATGTGTCCTGACCTT	57.424	42.857	0.00	0.00	0.00	3.50
430	431	3.214328	GTTTTGTGATGTGTCCTGACCT	58.786	45.455	0.00	0.00	0.00	3.85
431	432	2.032030	CGTTTTGTGATGTGTCCTGACC	60.032	50.000	0.00	0.00	0.00	4.02
432	433	2.869801	TCGTTTTGTGATGTGTCCTGAC	59.130	45.455	0.00	0.00	0.00	3.51
433	434	3.130633	CTCGTTTTGTGATGTGTCCTGA	58.869	45.455	0.00	0.00	0.00	3.86
434	435	2.872245	ACTCGTTTTGTGATGTGTCCTG	59.128	45.455	0.00	0.00	0.00	3.86
435	436	3.194005	ACTCGTTTTGTGATGTGTCCT	57.806	42.857	0.00	0.00	0.00	3.85
436	437	3.432252	CCTACTCGTTTTGTGATGTGTCC	59.568	47.826	0.00	0.00	0.00	4.02
437	438	4.056050	ACCTACTCGTTTTGTGATGTGTC	58.944	43.478	0.00	0.00	0.00	3.67
438	439	3.807622	CACCTACTCGTTTTGTGATGTGT	59.192	43.478	0.00	0.00	0.00	3.72
439	440	3.807622	ACACCTACTCGTTTTGTGATGTG	59.192	43.478	0.00	0.00	0.00	3.21
440	441	4.067972	ACACCTACTCGTTTTGTGATGT	57.932	40.909	0.00	0.00	0.00	3.06
441	442	5.388061	CGTTACACCTACTCGTTTTGTGATG	60.388	44.000	0.00	0.00	0.00	3.07
442	443	4.682860	CGTTACACCTACTCGTTTTGTGAT	59.317	41.667	0.00	0.00	0.00	3.06
443	444	4.043750	CGTTACACCTACTCGTTTTGTGA	58.956	43.478	0.00	0.00	0.00	3.58
444	445	4.043750	TCGTTACACCTACTCGTTTTGTG	58.956	43.478	0.00	0.00	0.00	3.33
445	446	4.044426	GTCGTTACACCTACTCGTTTTGT	58.956	43.478	0.00	0.00	0.00	2.83
446	447	4.043750	TGTCGTTACACCTACTCGTTTTG	58.956	43.478	0.00	0.00	0.00	2.44
447	448	4.305989	TGTCGTTACACCTACTCGTTTT	57.694	40.909	0.00	0.00	0.00	2.43
448	449	3.988379	TGTCGTTACACCTACTCGTTT	57.012	42.857	0.00	0.00	0.00	3.60
468	469	7.275888	ACAAATACATGAATGACACACAAGT	57.724	32.000	0.00	0.00	0.00	3.16
469	470	8.578308	AAACAAATACATGAATGACACACAAG	57.422	30.769	0.00	0.00	0.00	3.16
470	471	7.378194	CGAAACAAATACATGAATGACACACAA	59.622	33.333	0.00	0.00	0.00	3.33
471	472	6.855403	CGAAACAAATACATGAATGACACACA	59.145	34.615	0.00	0.00	0.00	3.72
472	473	6.855914	ACGAAACAAATACATGAATGACACAC	59.144	34.615	0.00	0.00	0.00	3.82
473	474	6.964908	ACGAAACAAATACATGAATGACACA	58.035	32.000	0.00	0.00	0.00	3.72
474	475	7.075121	TGACGAAACAAATACATGAATGACAC	58.925	34.615	0.00	0.00	0.00	3.67
475	476	7.195839	TGACGAAACAAATACATGAATGACA	57.804	32.000	0.00	0.00	0.00	3.58
476	477	6.742718	CCTGACGAAACAAATACATGAATGAC	59.257	38.462	0.00	0.00	0.00	3.06
477	478	6.622679	GCCTGACGAAACAAATACATGAATGA	60.623	38.462	0.00	0.00	0.00	2.57
478	479	5.512788	GCCTGACGAAACAAATACATGAATG	59.487	40.000	0.00	0.00	0.00	2.67
479	480	5.415701	AGCCTGACGAAACAAATACATGAAT	59.584	36.000	0.00	0.00	0.00	2.57
480	481	4.759693	AGCCTGACGAAACAAATACATGAA	59.240	37.500	0.00	0.00	0.00	2.57
481	482	4.323417	AGCCTGACGAAACAAATACATGA	58.677	39.130	0.00	0.00	0.00	3.07
482	483	4.154015	TGAGCCTGACGAAACAAATACATG	59.846	41.667	0.00	0.00	0.00	3.21
483	484	4.323417	TGAGCCTGACGAAACAAATACAT	58.677	39.130	0.00	0.00	0.00	2.29
484	485	3.734463	TGAGCCTGACGAAACAAATACA	58.266	40.909	0.00	0.00	0.00	2.29
485	486	3.746492	ACTGAGCCTGACGAAACAAATAC	59.254	43.478	0.00	0.00	0.00	1.89
486	487	4.002906	ACTGAGCCTGACGAAACAAATA	57.997	40.909	0.00	0.00	0.00	1.40
487	488	2.851195	ACTGAGCCTGACGAAACAAAT	58.149	42.857	0.00	0.00	0.00	2.32
488	489	2.325583	ACTGAGCCTGACGAAACAAA	57.674	45.000	0.00	0.00	0.00	2.83
489	490	1.939934	CAACTGAGCCTGACGAAACAA	59.060	47.619	0.00	0.00	0.00	2.83
490	491	1.138069	TCAACTGAGCCTGACGAAACA	59.862	47.619	0.00	0.00	0.00	2.83
491	492	1.865865	TCAACTGAGCCTGACGAAAC	58.134	50.000	0.00	0.00	0.00	2.78
492	493	2.613026	TTCAACTGAGCCTGACGAAA	57.387	45.000	0.00	0.00	0.00	3.46
493	494	2.613026	TTTCAACTGAGCCTGACGAA	57.387	45.000	0.00	0.00	0.00	3.85
494	495	2.613026	TTTTCAACTGAGCCTGACGA	57.387	45.000	0.00	0.00	0.00	4.20
495	496	3.904136	ATTTTTCAACTGAGCCTGACG	57.096	42.857	0.00	0.00	0.00	4.35
559	560	2.489751	GGTTGGCCGCACTATTGC	59.510	61.111	0.00	0.00	46.21	3.56
579	580	2.311688	AATTCGCAGGGGACGCCTAG	62.312	60.000	11.30	8.66	0.00	3.02
584	585	0.676782	AAGGAAATTCGCAGGGGACG	60.677	55.000	0.00	0.00	0.00	4.79
599	600	1.202964	GGAACGGGGAAAAGGAAAGGA	60.203	52.381	0.00	0.00	0.00	3.36
602	603	3.443044	GGGAACGGGGAAAAGGAAA	57.557	52.632	0.00	0.00	0.00	3.13
1487	1501	5.885912	GGCAAGTTTAATTCCTGGATCTACA	59.114	40.000	0.00	0.00	0.00	2.74
1503	1517	2.519780	TTTCGCCCCGGCAAGTTT	60.520	55.556	6.52	0.00	42.06	2.66
1643	1660	3.857052	CGCCACCTAGTTGTTGAGAATA	58.143	45.455	0.00	0.00	0.00	1.75
1716	1733	1.112916	TCGAGCAGCGGGAATCCATA	61.113	55.000	0.09	0.00	41.33	2.74
1722	1739	0.107703	AATGATTCGAGCAGCGGGAA	60.108	50.000	3.99	3.99	41.33	3.97
1733	1750	1.610522	GGCCAGGGAATGAATGATTCG	59.389	52.381	0.00	0.00	41.45	3.34
2084	2108	3.446310	TTGACTTTGTCAGTAGCGACA	57.554	42.857	0.00	0.00	43.69	4.35
2115	2139	1.017387	CCTTTGGCTTATCGGCTCAC	58.983	55.000	0.00	0.00	39.32	3.51
2127	2151	6.230472	AGGAACATTTACAATTTCCTTTGGC	58.770	36.000	0.00	0.00	44.54	4.52
2203	2508	2.808543	ACGATGAAAAGGTCTGCTGTTC	59.191	45.455	0.00	0.00	0.00	3.18
2308	2617	7.484993	AGCAGATCTAATCATGAGAAGCTAT	57.515	36.000	0.09	0.00	31.77	2.97
2325	2634	6.892658	TCCTAGAGACTCATTTAGCAGATC	57.107	41.667	5.02	0.00	0.00	2.75
2375	2691	9.832445	AATCAACTTAGTAAGACTTCAACAAGA	57.168	29.630	16.89	0.00	33.34	3.02
2407	2723	4.134379	TCTTGAAGAAGCATAGCTGAGG	57.866	45.455	0.00	0.00	39.62	3.86
2447	2767	4.989279	ACATTGGCTTCCATCATTACAC	57.011	40.909	0.00	0.00	31.53	2.90
2452	2772	6.372381	GCTTTAAAAACATTGGCTTCCATCAT	59.628	34.615	0.00	0.00	31.53	2.45
2472	2792	0.717224	CGCTTCGCTTTACCGCTTTA	59.283	50.000	0.00	0.00	0.00	1.85
2558	2879	4.842531	TTCTACTGCCCATCAGATTCAA	57.157	40.909	0.00	0.00	45.72	2.69
2563	2884	4.809193	ACTCTATTCTACTGCCCATCAGA	58.191	43.478	0.00	0.00	45.72	3.27
2589	2910	9.601217	AATCAAGGTATGTATGTCTCACTAAAC	57.399	33.333	0.00	0.00	0.00	2.01
2645	2966	8.167691	AGTGGATGGATTAGAATAATGGCTAT	57.832	34.615	0.00	0.00	0.00	2.97
2759	3081	1.471684	CTTGTCATGCCTTTCCTGCTC	59.528	52.381	0.00	0.00	0.00	4.26
2826	3148	0.032217	CTCCTGCCCTCTCTTCTCCT	60.032	60.000	0.00	0.00	0.00	3.69
3078	3400	4.284550	TGGCCACAACTCCTGCCC	62.285	66.667	0.00	0.00	43.35	5.36
3081	3585	0.617413	ATCTCTGGCCACAACTCCTG	59.383	55.000	0.00	0.00	0.00	3.86
3095	3599	2.803030	ACCAGAGCATGCAAATCTCT	57.197	45.000	21.98	10.65	37.66	3.10
3121	3694	2.114506	AGGGGAAAGAAAGAGGGAGAGA	59.885	50.000	0.00	0.00	0.00	3.10
3122	3695	2.503765	GAGGGGAAAGAAAGAGGGAGAG	59.496	54.545	0.00	0.00	0.00	3.20
3127	3700	3.797559	ACAAGAGGGGAAAGAAAGAGG	57.202	47.619	0.00	0.00	0.00	3.69
3144	3717	3.554324	GCTCACACGTGAAAGAGTTACAA	59.446	43.478	25.01	0.00	39.39	2.41
3152	3725	0.532862	ACTGGGCTCACACGTGAAAG	60.533	55.000	25.01	18.78	39.39	2.62
3159	3732	0.467290	TGGGAAAACTGGGCTCACAC	60.467	55.000	0.00	0.00	0.00	3.82
3180	3753	2.113139	CTGGGCGGGAACACAAGT	59.887	61.111	0.00	0.00	0.00	3.16
3199	3772	3.657727	AGAGATTTCTGGTGGGAAAAGGA	59.342	43.478	0.00	0.00	38.46	3.36
3395	3991	1.521681	GCGTCCCTAAAGCATCGCT	60.522	57.895	0.00	0.00	42.56	4.93
3396	3992	1.090052	AAGCGTCCCTAAAGCATCGC	61.090	55.000	0.00	0.00	43.16	4.58
3397	3993	1.369625	AAAGCGTCCCTAAAGCATCG	58.630	50.000	0.00	0.00	34.45	3.84
3398	3994	3.267483	TGTAAAGCGTCCCTAAAGCATC	58.733	45.455	0.00	0.00	34.45	3.91
3399	3995	3.343941	TGTAAAGCGTCCCTAAAGCAT	57.656	42.857	0.00	0.00	34.45	3.79
3400	3996	2.843401	TGTAAAGCGTCCCTAAAGCA	57.157	45.000	0.00	0.00	34.45	3.91
3401	3997	3.251487	TGTTTGTAAAGCGTCCCTAAAGC	59.749	43.478	0.00	0.00	0.00	3.51
3402	3998	4.514066	ACTGTTTGTAAAGCGTCCCTAAAG	59.486	41.667	0.00	0.00	0.00	1.85
3403	3999	4.273969	CACTGTTTGTAAAGCGTCCCTAAA	59.726	41.667	0.00	0.00	0.00	1.85
3482	4090	2.778299	AGAGAGAGATACTAGCGCCTG	58.222	52.381	2.29	0.00	0.00	4.85
3487	4095	9.078753	GTTTTGTGTTAAGAGAGAGATACTAGC	57.921	37.037	0.00	0.00	0.00	3.42
3610	4220	6.749118	GCATTGCAACAGAAGGACTAAAATAG	59.251	38.462	0.00	0.00	0.00	1.73
3646	4256	7.201384	GCTTAAAGTGCTTGATTTGACTAATGC	60.201	37.037	0.00	0.00	0.00	3.56
3822	4631	4.286032	ACTTTAGCAAGACCTGGTGATACA	59.714	41.667	2.82	0.00	36.95	2.29
3927	4738	6.409524	TCTTGTGAAAGGAAAGATGCATTT	57.590	33.333	0.00	0.00	0.00	2.32
3939	4750	3.629398	AGTTCAGTGCTTCTTGTGAAAGG	59.371	43.478	0.00	0.00	30.94	3.11
3959	4771	5.105554	TGTTTCCAATGCTGTGTTTTGTAGT	60.106	36.000	0.00	0.00	0.00	2.73
4205	5077	9.167311	GCTAACCATAAATTATCCATGTCTAGG	57.833	37.037	0.00	0.00	0.00	3.02
4329	5207	2.288948	GGCAAATGGCTGTCATTGTGAA	60.289	45.455	8.44	0.00	44.68	3.18
4349	5227	2.076863	GTCATTTCTCTCCACCAACGG	58.923	52.381	0.00	0.00	0.00	4.44
4350	5228	2.076863	GGTCATTTCTCTCCACCAACG	58.923	52.381	0.00	0.00	0.00	4.10
4372	5250	0.549950	ATCATGACTGAGCTTGGGGG	59.450	55.000	0.00	0.00	34.12	5.40
4408	5286	3.300590	GCAAATTGTACATGCTTGCGTAC	59.699	43.478	16.55	0.00	38.76	3.67
4410	5288	2.327568	GCAAATTGTACATGCTTGCGT	58.672	42.857	16.55	0.00	37.12	5.24
4552	5430	7.004555	TGAGTCTAAGGCTTCAAGAAACATA	57.995	36.000	1.30	0.00	0.00	2.29
4566	5444	0.824109	TGGCCACGATGAGTCTAAGG	59.176	55.000	0.00	0.00	0.00	2.69
4579	5457	2.130073	GACTTGCTTTCCGTGGCCAC	62.130	60.000	26.78	26.78	0.00	5.01
4603	5481	5.048713	GGGTGTTGTGATGTTTCTTCTTAGG	60.049	44.000	0.00	0.00	0.00	2.69
4616	5494	2.224992	TGGCTGTTATGGGTGTTGTGAT	60.225	45.455	0.00	0.00	0.00	3.06
4644	5522	4.356190	AGGGGCCATCTTCAATATCAAGAT	59.644	41.667	4.39	4.65	40.58	2.40
4683	5561	2.295909	ACAAAGTGTGGCGTATGCAATT	59.704	40.909	9.59	0.00	45.35	2.32
4692	5570	3.003689	AGAATCAGAAACAAAGTGTGGCG	59.996	43.478	0.00	0.00	0.00	5.69
4818	5696	2.802719	GGGGGTAATGTCTTCAAGCAA	58.197	47.619	0.00	0.00	0.00	3.91
4905	5783	5.578005	TGATTGGCTAGAGTACAGTGTAC	57.422	43.478	23.31	23.31	0.00	2.90
4932	5810	3.710209	CCAGAGAGGAATGGTTTGAGT	57.290	47.619	0.00	0.00	41.22	3.41
5020	6268	6.564709	TTCTTCTGACATTCACCTTCAATG	57.435	37.500	0.00	0.00	37.29	2.82
5111	6359	2.649331	GCATCAAGCTCATGCAAACT	57.351	45.000	20.59	0.00	45.19	2.66
5193	6441	3.134127	GGCACCTGGCGAATCCAC	61.134	66.667	0.00	0.00	46.16	4.02
5277	6525	0.035056	AAATCCCCAACAGAGCGAGG	60.035	55.000	0.00	0.00	0.00	4.63
5280	6528	0.035056	AGGAAATCCCCAACAGAGCG	60.035	55.000	0.00	0.00	36.42	5.03
5301	6549	4.025401	CCCAAGCCGACAACGCAC	62.025	66.667	0.00	0.00	38.29	5.34
5307	6555	4.263572	CCCACACCCAAGCCGACA	62.264	66.667	0.00	0.00	0.00	4.35
5334	6582	2.499693	GCCCAAAGCCCAAAATTAGCTA	59.500	45.455	0.00	0.00	35.30	3.32
5340	6588	1.376086	GCAGCCCAAAGCCCAAAAT	59.624	52.632	0.00	0.00	45.47	1.82
5365	6613	4.274950	GCCAACACTTAACTAACAGAGCAA	59.725	41.667	0.00	0.00	0.00	3.91
5366	6614	3.813166	GCCAACACTTAACTAACAGAGCA	59.187	43.478	0.00	0.00	0.00	4.26
5367	6615	3.188667	GGCCAACACTTAACTAACAGAGC	59.811	47.826	0.00	0.00	0.00	4.09
5368	6616	3.751698	GGGCCAACACTTAACTAACAGAG	59.248	47.826	4.39	0.00	0.00	3.35
5369	6617	3.136809	TGGGCCAACACTTAACTAACAGA	59.863	43.478	2.13	0.00	0.00	3.41
5370	6618	3.252458	GTGGGCCAACACTTAACTAACAG	59.748	47.826	8.40	0.00	38.32	3.16
5414	6904	6.206048	GCCTGAAGTTAAACTAAGGCTAACAA	59.794	38.462	16.53	0.00	46.56	2.83
5421	6911	7.754851	TTTTAGGCCTGAAGTTAAACTAAGG	57.245	36.000	17.99	0.00	36.05	2.69
5426	6916	8.925700	CAATCAATTTTAGGCCTGAAGTTAAAC	58.074	33.333	17.99	0.00	0.00	2.01
5429	6919	7.775053	ACAATCAATTTTAGGCCTGAAGTTA	57.225	32.000	17.99	6.36	0.00	2.24
5431	6921	6.670695	AACAATCAATTTTAGGCCTGAAGT	57.329	33.333	17.99	7.65	0.00	3.01
5437	6927	9.651913	TTATCAGAAAACAATCAATTTTAGGCC	57.348	29.630	0.00	0.00	29.44	5.19
5468	6958	8.725148	GCATATGTTCTGCTAGTAAAATGCTAT	58.275	33.333	4.29	0.00	36.68	2.97
5532	7022	5.163581	CCATGCCAAAGAGAACTTATTCTGG	60.164	44.000	0.00	0.00	45.60	3.86
5544	7034	2.489329	CAACAGTACCCATGCCAAAGAG	59.511	50.000	0.00	0.00	0.00	2.85
5585	7081	1.532794	TGCATCAAACACCACCCCC	60.533	57.895	0.00	0.00	0.00	5.40
5586	7082	0.827507	ACTGCATCAAACACCACCCC	60.828	55.000	0.00	0.00	0.00	4.95
5587	7083	0.314935	CACTGCATCAAACACCACCC	59.685	55.000	0.00	0.00	0.00	4.61
5588	7084	0.318955	GCACTGCATCAAACACCACC	60.319	55.000	0.00	0.00	0.00	4.61
5589	7085	0.670162	AGCACTGCATCAAACACCAC	59.330	50.000	3.30	0.00	0.00	4.16
5739	7235	3.730963	GCTTTGGTCAATTAACGCCTAGC	60.731	47.826	0.00	0.00	0.00	3.42
5740	7236	3.485216	CGCTTTGGTCAATTAACGCCTAG	60.485	47.826	0.00	0.00	0.00	3.02
5741	7237	2.417239	CGCTTTGGTCAATTAACGCCTA	59.583	45.455	0.00	0.00	0.00	3.93
5742	7238	1.199097	CGCTTTGGTCAATTAACGCCT	59.801	47.619	0.00	0.00	0.00	5.52
5743	7239	1.613270	CGCTTTGGTCAATTAACGCC	58.387	50.000	0.00	0.00	0.00	5.68
5744	7240	0.981956	GCGCTTTGGTCAATTAACGC	59.018	50.000	0.00	0.00	38.17	4.84
5745	7241	2.323939	TGCGCTTTGGTCAATTAACG	57.676	45.000	9.73	0.00	0.00	3.18
5746	7242	2.345341	GCATGCGCTTTGGTCAATTAAC	59.655	45.455	9.73	0.00	34.30	2.01
5747	7243	2.605030	GCATGCGCTTTGGTCAATTAA	58.395	42.857	9.73	0.00	34.30	1.40
5748	7244	2.276472	GCATGCGCTTTGGTCAATTA	57.724	45.000	9.73	0.00	34.30	1.40
5749	7245	3.126729	GCATGCGCTTTGGTCAATT	57.873	47.368	9.73	0.00	34.30	2.32
5750	7246	4.895854	GCATGCGCTTTGGTCAAT	57.104	50.000	9.73	0.00	34.30	2.57
5763	7259	2.313234	GCATAACTGCGCATAAGCATG	58.687	47.619	12.24	11.51	46.97	4.06
5764	7260	2.693797	GCATAACTGCGCATAAGCAT	57.306	45.000	12.24	0.00	46.97	3.79
5775	7271	4.864916	ACGCTTAATCTGTGCATAACTG	57.135	40.909	0.00	0.00	0.00	3.16
5776	7272	5.661458	ACTACGCTTAATCTGTGCATAACT	58.339	37.500	0.00	0.00	0.00	2.24
5777	7273	5.968387	ACTACGCTTAATCTGTGCATAAC	57.032	39.130	0.00	0.00	0.00	1.89
5778	7274	7.307160	GCATAACTACGCTTAATCTGTGCATAA	60.307	37.037	0.00	0.00	0.00	1.90
5779	7275	6.145534	GCATAACTACGCTTAATCTGTGCATA	59.854	38.462	0.00	0.00	0.00	3.14
5780	7276	5.050091	GCATAACTACGCTTAATCTGTGCAT	60.050	40.000	0.00	0.00	0.00	3.96
5781	7277	4.270084	GCATAACTACGCTTAATCTGTGCA	59.730	41.667	0.00	0.00	0.00	4.57
5782	7278	4.606232	CGCATAACTACGCTTAATCTGTGC	60.606	45.833	0.00	0.00	0.00	4.57
5783	7279	4.994734	CGCATAACTACGCTTAATCTGTG	58.005	43.478	0.00	0.00	0.00	3.66
5811	7307	0.165944	CTCTAGGCGTTGGCAAAACG	59.834	55.000	16.88	16.88	45.56	3.60
5812	7308	0.109735	GCTCTAGGCGTTGGCAAAAC	60.110	55.000	0.00	0.00	42.47	2.43
5813	7309	1.241315	GGCTCTAGGCGTTGGCAAAA	61.241	55.000	0.00	0.00	42.47	2.44
5814	7310	1.674322	GGCTCTAGGCGTTGGCAAA	60.674	57.895	0.00	0.00	42.47	3.68
5815	7311	1.261938	TAGGCTCTAGGCGTTGGCAA	61.262	55.000	0.00	0.00	46.23	4.52
5816	7312	1.676678	CTAGGCTCTAGGCGTTGGCA	61.677	60.000	0.00	0.00	46.23	4.92
5817	7313	1.068250	CTAGGCTCTAGGCGTTGGC	59.932	63.158	0.00	0.00	46.23	4.52
5818	7314	1.742768	CCTAGGCTCTAGGCGTTGG	59.257	63.158	13.35	10.22	46.23	3.77
5819	7315	0.103208	CACCTAGGCTCTAGGCGTTG	59.897	60.000	21.59	12.66	46.23	4.10
5820	7316	0.324460	ACACCTAGGCTCTAGGCGTT	60.324	55.000	21.59	8.70	46.23	4.84
5821	7317	1.038130	CACACCTAGGCTCTAGGCGT	61.038	60.000	21.59	17.40	46.23	5.68
5822	7318	1.736586	CACACCTAGGCTCTAGGCG	59.263	63.158	21.59	16.90	46.23	5.52
5823	7319	1.045911	AGCACACCTAGGCTCTAGGC	61.046	60.000	21.59	4.52	38.25	3.93
5824	7320	1.490574	AAGCACACCTAGGCTCTAGG	58.509	55.000	20.58	20.58	40.01	3.02
5825	7321	3.491792	GCTTAAGCACACCTAGGCTCTAG	60.492	52.174	22.59	2.69	40.01	2.43
5826	7322	2.431057	GCTTAAGCACACCTAGGCTCTA	59.569	50.000	22.59	0.00	40.01	2.43
5827	7323	1.208293	GCTTAAGCACACCTAGGCTCT	59.792	52.381	22.59	0.00	40.01	4.09
5828	7324	1.657822	GCTTAAGCACACCTAGGCTC	58.342	55.000	22.59	0.00	40.01	4.70
5829	7325	0.108138	CGCTTAAGCACACCTAGGCT	60.108	55.000	26.29	0.00	43.46	4.58
5830	7326	1.706287	GCGCTTAAGCACACCTAGGC	61.706	60.000	26.29	14.92	42.21	3.93
5831	7327	0.108138	AGCGCTTAAGCACACCTAGG	60.108	55.000	26.29	7.41	42.21	3.02
5832	7328	1.281899	GAGCGCTTAAGCACACCTAG	58.718	55.000	26.29	9.79	42.21	3.02
5833	7329	0.457853	CGAGCGCTTAAGCACACCTA	60.458	55.000	26.29	0.00	42.21	3.08
5834	7330	1.738099	CGAGCGCTTAAGCACACCT	60.738	57.895	26.29	15.72	42.21	4.00
5835	7331	1.084370	ATCGAGCGCTTAAGCACACC	61.084	55.000	26.29	12.02	42.21	4.16
5836	7332	0.721718	AATCGAGCGCTTAAGCACAC	59.278	50.000	26.29	14.77	42.21	3.82
5837	7333	2.193447	CTAATCGAGCGCTTAAGCACA	58.807	47.619	26.29	2.37	42.21	4.57
5838	7334	1.523095	CCTAATCGAGCGCTTAAGCAC	59.477	52.381	26.29	17.53	42.21	4.40
5839	7335	1.852942	CCTAATCGAGCGCTTAAGCA	58.147	50.000	26.29	7.58	42.21	3.91
5840	7336	0.509070	GCCTAATCGAGCGCTTAAGC	59.491	55.000	17.83	17.83	37.78	3.09
5841	7337	0.778815	CGCCTAATCGAGCGCTTAAG	59.221	55.000	13.26	6.77	46.50	1.85
5842	7338	2.881441	CGCCTAATCGAGCGCTTAA	58.119	52.632	13.26	2.56	46.50	1.85
5843	7339	4.628160	CGCCTAATCGAGCGCTTA	57.372	55.556	13.26	2.98	46.50	3.09
5883	7379	9.110986	CAGACAACTGCATGTGAAATCACAGTA	62.111	40.741	19.79	11.26	46.62	2.74
5901	7397	2.420022	GTGCACTCACAAACAGACAACT	59.580	45.455	10.32	0.00	42.66	3.16
5960	7456	1.639298	CTTGTCGCTGGTAGCTTGGC	61.639	60.000	0.00	0.00	39.60	4.52
6241	7858	7.569240	GGAGAATATAATAGCTAACATGCCCT	58.431	38.462	0.00	0.00	0.00	5.19
6364	8080	9.754382	GAAATCCATATACAAGCATCAAATTGT	57.246	29.630	0.00	0.00	42.15	2.71
6365	8081	9.976511	AGAAATCCATATACAAGCATCAAATTG	57.023	29.630	0.00	0.00	0.00	2.32
6492	8208	5.819901	CCCTCAGGTAAGCTTTTCTCATAAG	59.180	44.000	3.20	0.00	0.00	1.73
6835	8731	3.733337	CCCATATATATTGCGAGGAGGC	58.267	50.000	0.00	0.00	0.00	4.70
6869	8765	2.103771	GAGGTGGCTGCTGATATGAAGA	59.896	50.000	0.00	0.00	0.00	2.87
6922	8818	2.498167	ACACGAGAAGCAGCTTCATTT	58.502	42.857	32.20	15.57	42.37	2.32
7011	8907	7.532571	TGCATTATTGAAGTTCTTGACATGAG	58.467	34.615	0.00	0.00	0.00	2.90
7345	9241	1.774856	ACAACCCCAAGCAAGTCTACT	59.225	47.619	0.00	0.00	0.00	2.57
7561	9458	2.139917	CCGTTGAATTCACCAACTCGA	58.860	47.619	7.89	0.00	41.11	4.04
7627	9524	2.757314	CCTTTCAGCTTCAGGGAAATCC	59.243	50.000	0.00	0.00	30.88	3.01
7975	9872	5.369409	CAGTATGATCCTGGATATGGCAT	57.631	43.478	9.66	11.01	39.69	4.40
8041	9938	0.461548	CTTGTGCTGAGAGGCCGATA	59.538	55.000	0.00	0.00	0.00	2.92
8296	10199	1.852157	ACCACCATTCAGCCCAGGA	60.852	57.895	0.00	0.00	0.00	3.86
8368	10274	4.661222	TCACAGCATAGGAATTGTTGGAA	58.339	39.130	0.00	0.00	30.49	3.53
8490	10396	5.684704	CAGCTGAAGGACCATAGGAATTAA	58.315	41.667	8.42	0.00	0.00	1.40
8624	10530	3.213206	ACATTTGAAGCACAGACCAGA	57.787	42.857	0.00	0.00	0.00	3.86
8700	10606	0.810031	GCCATTCGCATACGTCTGGT	60.810	55.000	2.90	0.00	41.14	4.00
8725	10631	2.481441	TGCCTGTTGTATCCTCCTGAT	58.519	47.619	0.00	0.00	37.49	2.90
8726	10632	1.951209	TGCCTGTTGTATCCTCCTGA	58.049	50.000	0.00	0.00	0.00	3.86
8761	10667	4.546829	AGTGATCGGCCAAACTACTTAA	57.453	40.909	2.24	0.00	0.00	1.85
8837	10743	4.072131	TCTATTGACAACCAAGACCAAGC	58.928	43.478	0.00	0.00	38.31	4.01
9049	10964	7.284034	ACAAATAGATGCCCTTATGTTTGAGAG	59.716	37.037	0.00	0.00	0.00	3.20
9063	10978	8.863049	CATCAAGTTACAAAACAAATAGATGCC	58.137	33.333	0.00	0.00	38.12	4.40
9070	10985	8.891671	AAGATGCATCAAGTTACAAAACAAAT	57.108	26.923	27.81	0.00	38.12	2.32
9230	12314	6.476243	TCTATTTTTGGTCGTTTAGCAGTC	57.524	37.500	0.00	0.00	36.82	3.51
9234	12318	8.448615	AGTTGTATCTATTTTTGGTCGTTTAGC	58.551	33.333	0.00	0.00	0.00	3.09
9236	12320	8.231837	GCAGTTGTATCTATTTTTGGTCGTTTA	58.768	33.333	0.00	0.00	0.00	2.01
9322	12470	2.409651	GGACGGCACAAAACGCAA	59.590	55.556	0.00	0.00	0.00	4.85
9382	12530	1.737793	GTCGTTACCAAATGCTGAGGG	59.262	52.381	0.00	0.00	0.00	4.30
9399	12547	4.846040	ACTATACTATGGCTCTAGGGTCG	58.154	47.826	0.00	0.00	0.00	4.79
9401	12549	6.973700	AGTACTATACTATGGCTCTAGGGT	57.026	41.667	0.00	0.00	37.23	4.34
9405	12553	8.991783	ACACAAAGTACTATACTATGGCTCTA	57.008	34.615	0.00	0.00	38.26	2.43
9454	12603	1.700955	TTAGGATGTACTCCCTCCGC	58.299	55.000	9.41	0.00	46.27	5.54
9460	12609	6.049790	GGAAGAACACATTAGGATGTACTCC	58.950	44.000	0.00	0.00	44.55	3.85
9467	12616	4.225267	AGAACCGGAAGAACACATTAGGAT	59.775	41.667	9.46	0.00	0.00	3.24
9470	12619	7.980099	ACTATTAGAACCGGAAGAACACATTAG	59.020	37.037	9.46	0.00	0.00	1.73
9480	12629	3.871594	CCAAGCACTATTAGAACCGGAAG	59.128	47.826	9.46	0.00	0.00	3.46
9485	12634	5.880332	TGAATCACCAAGCACTATTAGAACC	59.120	40.000	0.00	0.00	0.00	3.62
9493	12642	2.483877	CGCTTTGAATCACCAAGCACTA	59.516	45.455	16.84	0.00	0.00	2.74
9501	12650	1.937546	CTGGGCCGCTTTGAATCACC	61.938	60.000	0.00	0.00	0.00	4.02
9507	12694	4.344865	GGGTCTGGGCCGCTTTGA	62.345	66.667	0.00	0.00	0.00	2.69
9513	12700	4.256180	GGCATAGGGTCTGGGCCG	62.256	72.222	0.00	0.00	34.56	6.13
9518	12705	3.019564	CCTTTTTCTGGCATAGGGTCTG	58.980	50.000	0.00	0.00	0.00	3.51
9592	12780	7.232118	ACATCCAAGGTAAAAGGAAAATGAG	57.768	36.000	0.00	0.00	34.62	2.90
9646	12834	0.675083	TGCACCAACCAATGCAGAAG	59.325	50.000	0.00	0.00	46.63	2.85
9657	12851	4.568152	ATTAAGAGTTGTGTGCACCAAC	57.432	40.909	28.96	28.96	0.00	3.77
9680	12874	4.545610	ACCTTGTAAACGTTGCAATGATG	58.454	39.130	25.13	7.47	34.77	3.07

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.