Multiple sequence alignment - TraesCS1B01G101900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G101900 chr1B 100.000 2399 0 0 1 2399 111919421 111917023 0.000000e+00 4431
1 TraesCS1B01G101900 chr1B 95.402 174 8 0 1715 1888 90922759 90922932 6.530000e-71 278
2 TraesCS1B01G101900 chr1B 95.402 174 8 0 1715 1888 354431349 354431176 6.530000e-71 278
3 TraesCS1B01G101900 chr1B 95.429 175 7 1 1714 1888 640451458 640451285 6.530000e-71 278
4 TraesCS1B01G101900 chr1A 93.836 1460 62 17 282 1716 70907490 70906034 0.000000e+00 2172
5 TraesCS1B01G101900 chr1A 91.710 193 15 1 1916 2107 70906036 70905844 1.410000e-67 267
6 TraesCS1B01G101900 chr1A 90.265 113 5 5 2273 2383 70905852 70905744 2.490000e-30 143
7 TraesCS1B01G101900 chr1D 93.668 1453 71 14 282 1716 70457935 70456486 0.000000e+00 2154
8 TraesCS1B01G101900 chr1D 94.326 282 16 0 1 282 421078510 421078229 1.320000e-117 433
9 TraesCS1B01G101900 chr1D 96.023 176 7 0 1713 1888 15293273 15293448 1.090000e-73 287
10 TraesCS1B01G101900 chr1D 93.264 193 12 1 1916 2107 70456488 70456296 1.400000e-72 283
11 TraesCS1B01G101900 chr1D 91.892 111 7 2 2273 2383 70456304 70456196 1.150000e-33 154
12 TraesCS1B01G101900 chr3D 95.053 283 14 0 1 283 39587233 39586951 1.690000e-121 446
13 TraesCS1B01G101900 chr6B 95.035 282 14 0 1 282 133168162 133167881 6.090000e-121 444
14 TraesCS1B01G101900 chr6B 95.455 176 7 1 1711 1886 478330787 478330613 1.820000e-71 279
15 TraesCS1B01G101900 chr6B 89.474 171 17 1 1714 1884 34208814 34208645 5.190000e-52 215
16 TraesCS1B01G101900 chr3A 95.000 280 14 0 1 280 66515293 66515572 7.870000e-120 440
17 TraesCS1B01G101900 chr7D 94.406 286 15 1 1 286 491250019 491249735 2.830000e-119 438
18 TraesCS1B01G101900 chr7D 90.058 171 17 0 1712 1882 563308672 563308502 3.100000e-54 222
19 TraesCS1B01G101900 chr5D 94.700 283 14 1 1 282 391355610 391355328 2.830000e-119 438
20 TraesCS1B01G101900 chr5D 93.011 186 10 3 1705 1888 421982356 421982540 3.930000e-68 268
21 TraesCS1B01G101900 chr3B 92.532 308 18 5 1 306 735950293 735949989 1.020000e-118 436
22 TraesCS1B01G101900 chr7B 94.326 282 16 0 1 282 57285680 57285961 1.320000e-117 433
23 TraesCS1B01G101900 chr4B 94.326 282 16 0 1 282 94788022 94788303 1.320000e-117 433
24 TraesCS1B01G101900 chr4B 91.304 207 15 2 1715 1918 515150304 515150510 1.820000e-71 279
25 TraesCS1B01G101900 chr4B 79.144 374 47 19 307 675 597035163 597034816 1.850000e-56 230
26 TraesCS1B01G101900 chr6D 95.429 175 8 0 1714 1888 68629455 68629281 1.820000e-71 279
27 TraesCS1B01G101900 chrUn 90.244 205 16 1 1714 1918 99847772 99847972 5.090000e-67 265
28 TraesCS1B01G101900 chr5A 93.182 176 9 3 1715 1888 74491668 74491842 3.060000e-64 255
29 TraesCS1B01G101900 chr5A 92.614 176 10 3 1715 1888 74492769 74492943 1.420000e-62 250
30 TraesCS1B01G101900 chr5A 92.529 174 13 0 1715 1888 709418138 709417965 1.420000e-62 250
31 TraesCS1B01G101900 chr2A 88.636 176 18 1 1715 1888 48464112 48463937 1.870000e-51 213
32 TraesCS1B01G101900 chr2B 91.603 131 11 0 1715 1845 665191023 665190893 5.270000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G101900 chr1B 111917023 111919421 2398 True 4431.000000 4431 100.000000 1 2399 1 chr1B.!!$R1 2398
1 TraesCS1B01G101900 chr1A 70905744 70907490 1746 True 860.666667 2172 91.937000 282 2383 3 chr1A.!!$R1 2101
2 TraesCS1B01G101900 chr1D 70456196 70457935 1739 True 863.666667 2154 92.941333 282 2383 3 chr1D.!!$R2 2101
3 TraesCS1B01G101900 chr5A 74491668 74492943 1275 False 252.500000 255 92.898000 1715 1888 2 chr5A.!!$F1 173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.035056 CCTGGTTGGGACCTCATGTC 60.035 60.0 0.0 0.0 46.66 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2024 0.038744 AATCCCATCATCGATGCCCC 59.961 55.0 20.81 0.0 38.59 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.755628 GAGTGCGCCGGACTGGTA 61.756 66.667 18.13 0.00 41.21 3.25
19 20 3.701604 GAGTGCGCCGGACTGGTAG 62.702 68.421 18.13 0.00 41.21 3.18
20 21 4.814294 GTGCGCCGGACTGGTAGG 62.814 72.222 5.05 0.00 41.21 3.18
22 23 4.814294 GCGCCGGACTGGTAGGTG 62.814 72.222 5.05 4.62 41.21 4.00
23 24 4.814294 CGCCGGACTGGTAGGTGC 62.814 72.222 5.05 0.00 41.21 5.01
24 25 4.468689 GCCGGACTGGTAGGTGCC 62.469 72.222 5.05 0.00 41.21 5.01
25 26 2.683933 CCGGACTGGTAGGTGCCT 60.684 66.667 0.00 0.00 0.00 4.75
26 27 2.722201 CCGGACTGGTAGGTGCCTC 61.722 68.421 0.00 0.00 0.00 4.70
27 28 1.982395 CGGACTGGTAGGTGCCTCA 60.982 63.158 0.00 0.00 0.00 3.86
28 29 1.330655 CGGACTGGTAGGTGCCTCAT 61.331 60.000 0.00 0.00 0.00 2.90
29 30 1.789523 GGACTGGTAGGTGCCTCATA 58.210 55.000 0.00 0.00 0.00 2.15
30 31 1.413077 GGACTGGTAGGTGCCTCATAC 59.587 57.143 0.00 0.00 33.22 2.39
40 41 2.109799 CCTCATACCAGGCAGGCG 59.890 66.667 0.00 0.00 43.14 5.52
41 42 2.735772 CCTCATACCAGGCAGGCGT 61.736 63.158 0.00 0.00 43.14 5.68
42 43 1.227380 CTCATACCAGGCAGGCGTC 60.227 63.158 0.00 0.00 43.14 5.19
43 44 2.203070 CATACCAGGCAGGCGTCC 60.203 66.667 0.00 0.00 43.14 4.79
44 45 2.365635 ATACCAGGCAGGCGTCCT 60.366 61.111 0.00 0.00 43.14 3.85
59 60 2.386864 TCCTGGTTGGGACCTCATG 58.613 57.895 0.00 0.00 46.66 3.07
60 61 0.475632 TCCTGGTTGGGACCTCATGT 60.476 55.000 0.00 0.00 46.66 3.21
61 62 0.035056 CCTGGTTGGGACCTCATGTC 60.035 60.000 0.00 0.00 46.66 3.06
62 63 0.987294 CTGGTTGGGACCTCATGTCT 59.013 55.000 0.00 0.00 46.66 3.41
63 64 1.352352 CTGGTTGGGACCTCATGTCTT 59.648 52.381 0.00 0.00 46.66 3.01
64 65 2.571653 CTGGTTGGGACCTCATGTCTTA 59.428 50.000 0.00 0.00 46.66 2.10
65 66 2.571653 TGGTTGGGACCTCATGTCTTAG 59.428 50.000 0.00 0.00 46.66 2.18
66 67 2.838202 GGTTGGGACCTCATGTCTTAGA 59.162 50.000 0.00 0.00 43.89 2.10
67 68 3.456277 GGTTGGGACCTCATGTCTTAGAT 59.544 47.826 0.00 0.00 43.89 1.98
68 69 4.446371 GTTGGGACCTCATGTCTTAGATG 58.554 47.826 0.00 0.00 43.89 2.90
69 70 3.724478 TGGGACCTCATGTCTTAGATGT 58.276 45.455 0.00 0.00 43.89 3.06
70 71 4.104086 TGGGACCTCATGTCTTAGATGTT 58.896 43.478 0.00 0.00 43.89 2.71
71 72 4.536090 TGGGACCTCATGTCTTAGATGTTT 59.464 41.667 0.00 0.00 43.89 2.83
72 73 5.724370 TGGGACCTCATGTCTTAGATGTTTA 59.276 40.000 0.00 0.00 43.89 2.01
73 74 6.127054 TGGGACCTCATGTCTTAGATGTTTAG 60.127 42.308 0.00 0.00 43.89 1.85
74 75 6.284459 GGACCTCATGTCTTAGATGTTTAGG 58.716 44.000 0.00 0.00 43.89 2.69
75 76 6.127026 GGACCTCATGTCTTAGATGTTTAGGT 60.127 42.308 0.00 0.00 43.89 3.08
76 77 7.259088 ACCTCATGTCTTAGATGTTTAGGTT 57.741 36.000 0.00 0.00 29.47 3.50
77 78 7.690256 ACCTCATGTCTTAGATGTTTAGGTTT 58.310 34.615 0.00 0.00 29.47 3.27
78 79 7.607991 ACCTCATGTCTTAGATGTTTAGGTTTG 59.392 37.037 0.00 0.00 29.47 2.93
79 80 7.066284 CCTCATGTCTTAGATGTTTAGGTTTGG 59.934 40.741 0.00 0.00 0.00 3.28
80 81 6.374333 TCATGTCTTAGATGTTTAGGTTTGGC 59.626 38.462 0.00 0.00 0.00 4.52
81 82 5.876357 TGTCTTAGATGTTTAGGTTTGGCT 58.124 37.500 0.00 0.00 0.00 4.75
82 83 5.705441 TGTCTTAGATGTTTAGGTTTGGCTG 59.295 40.000 0.00 0.00 0.00 4.85
83 84 4.700213 TCTTAGATGTTTAGGTTTGGCTGC 59.300 41.667 0.00 0.00 0.00 5.25
84 85 1.812571 AGATGTTTAGGTTTGGCTGCG 59.187 47.619 0.00 0.00 0.00 5.18
85 86 1.810151 GATGTTTAGGTTTGGCTGCGA 59.190 47.619 0.00 0.00 0.00 5.10
86 87 1.904287 TGTTTAGGTTTGGCTGCGAT 58.096 45.000 0.00 0.00 0.00 4.58
87 88 1.539388 TGTTTAGGTTTGGCTGCGATG 59.461 47.619 0.00 0.00 0.00 3.84
88 89 1.539827 GTTTAGGTTTGGCTGCGATGT 59.460 47.619 0.00 0.00 0.00 3.06
89 90 1.448985 TTAGGTTTGGCTGCGATGTC 58.551 50.000 0.00 0.00 0.00 3.06
90 91 0.613260 TAGGTTTGGCTGCGATGTCT 59.387 50.000 0.00 0.00 0.00 3.41
91 92 0.957395 AGGTTTGGCTGCGATGTCTG 60.957 55.000 0.00 0.00 0.00 3.51
92 93 1.237285 GGTTTGGCTGCGATGTCTGT 61.237 55.000 0.00 0.00 0.00 3.41
93 94 0.593128 GTTTGGCTGCGATGTCTGTT 59.407 50.000 0.00 0.00 0.00 3.16
94 95 1.001378 GTTTGGCTGCGATGTCTGTTT 60.001 47.619 0.00 0.00 0.00 2.83
95 96 0.592637 TTGGCTGCGATGTCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
96 97 1.236616 TGGCTGCGATGTCTGTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
97 98 1.237285 GGCTGCGATGTCTGTTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
98 99 1.438651 GCTGCGATGTCTGTTTGGTA 58.561 50.000 0.00 0.00 0.00 3.25
99 100 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
100 101 2.420022 GCTGCGATGTCTGTTTGGTATT 59.580 45.455 0.00 0.00 0.00 1.89
101 102 3.621268 GCTGCGATGTCTGTTTGGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
102 103 4.260375 GCTGCGATGTCTGTTTGGTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
103 104 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
104 105 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
105 106 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
106 107 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
107 108 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
108 109 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
109 110 3.054655 GTCTGTTTGGTATTAGGCCCAGA 60.055 47.826 0.00 0.00 31.04 3.86
110 111 3.054655 TCTGTTTGGTATTAGGCCCAGAC 60.055 47.826 0.00 0.00 36.61 3.51
111 112 2.916934 TGTTTGGTATTAGGCCCAGACT 59.083 45.455 0.00 0.00 36.91 3.24
112 113 4.105577 TGTTTGGTATTAGGCCCAGACTA 58.894 43.478 0.00 0.00 36.91 2.59
113 114 4.724798 TGTTTGGTATTAGGCCCAGACTAT 59.275 41.667 0.00 0.00 36.91 2.12
114 115 5.163237 TGTTTGGTATTAGGCCCAGACTATC 60.163 44.000 0.00 0.00 36.91 2.08
115 116 4.207698 TGGTATTAGGCCCAGACTATCA 57.792 45.455 0.00 0.00 0.00 2.15
116 117 4.160329 TGGTATTAGGCCCAGACTATCAG 58.840 47.826 0.00 0.00 0.00 2.90
117 118 3.055747 GGTATTAGGCCCAGACTATCAGC 60.056 52.174 0.00 0.00 0.00 4.26
118 119 1.040646 TTAGGCCCAGACTATCAGCG 58.959 55.000 0.00 0.00 0.00 5.18
119 120 1.464376 TAGGCCCAGACTATCAGCGC 61.464 60.000 0.00 0.00 0.00 5.92
120 121 2.280457 GCCCAGACTATCAGCGCC 60.280 66.667 2.29 0.00 0.00 6.53
121 122 2.423446 CCCAGACTATCAGCGCCC 59.577 66.667 2.29 0.00 0.00 6.13
122 123 2.423446 CCAGACTATCAGCGCCCC 59.577 66.667 2.29 0.00 0.00 5.80
123 124 2.136878 CCAGACTATCAGCGCCCCT 61.137 63.158 2.29 0.00 0.00 4.79
124 125 1.690219 CCAGACTATCAGCGCCCCTT 61.690 60.000 2.29 0.00 0.00 3.95
125 126 0.249657 CAGACTATCAGCGCCCCTTC 60.250 60.000 2.29 0.00 0.00 3.46
126 127 0.687757 AGACTATCAGCGCCCCTTCA 60.688 55.000 2.29 0.00 0.00 3.02
127 128 0.394565 GACTATCAGCGCCCCTTCAT 59.605 55.000 2.29 0.00 0.00 2.57
128 129 0.394565 ACTATCAGCGCCCCTTCATC 59.605 55.000 2.29 0.00 0.00 2.92
129 130 0.394192 CTATCAGCGCCCCTTCATCA 59.606 55.000 2.29 0.00 0.00 3.07
130 131 0.836606 TATCAGCGCCCCTTCATCAA 59.163 50.000 2.29 0.00 0.00 2.57
131 132 0.749454 ATCAGCGCCCCTTCATCAAC 60.749 55.000 2.29 0.00 0.00 3.18
132 133 1.377725 CAGCGCCCCTTCATCAACT 60.378 57.895 2.29 0.00 0.00 3.16
133 134 1.377725 AGCGCCCCTTCATCAACTG 60.378 57.895 2.29 0.00 0.00 3.16
134 135 2.409870 GCGCCCCTTCATCAACTGG 61.410 63.158 0.00 0.00 0.00 4.00
135 136 1.299648 CGCCCCTTCATCAACTGGA 59.700 57.895 0.00 0.00 0.00 3.86
136 137 0.107017 CGCCCCTTCATCAACTGGAT 60.107 55.000 0.00 0.00 36.39 3.41
137 138 1.140852 CGCCCCTTCATCAACTGGATA 59.859 52.381 0.00 0.00 33.95 2.59
138 139 2.808202 CGCCCCTTCATCAACTGGATAG 60.808 54.545 0.00 0.00 33.95 2.08
139 140 2.487986 GCCCCTTCATCAACTGGATAGG 60.488 54.545 0.00 0.00 33.95 2.57
140 141 2.780010 CCCCTTCATCAACTGGATAGGT 59.220 50.000 0.00 0.00 32.05 3.08
141 142 3.434167 CCCCTTCATCAACTGGATAGGTG 60.434 52.174 0.00 0.00 43.21 4.00
142 143 3.200825 CCCTTCATCAACTGGATAGGTGT 59.799 47.826 0.00 0.00 42.42 4.16
143 144 4.408921 CCCTTCATCAACTGGATAGGTGTA 59.591 45.833 0.00 0.00 42.42 2.90
144 145 5.453903 CCCTTCATCAACTGGATAGGTGTAG 60.454 48.000 0.00 0.00 42.42 2.74
145 146 4.672587 TCATCAACTGGATAGGTGTAGC 57.327 45.455 0.00 0.00 42.42 3.58
146 147 3.068165 TCATCAACTGGATAGGTGTAGCG 59.932 47.826 0.00 0.00 42.42 4.26
147 148 2.730382 TCAACTGGATAGGTGTAGCGA 58.270 47.619 0.00 0.00 42.42 4.93
148 149 2.426024 TCAACTGGATAGGTGTAGCGAC 59.574 50.000 0.00 0.00 42.42 5.19
149 150 2.139323 ACTGGATAGGTGTAGCGACA 57.861 50.000 0.00 0.00 0.00 4.35
150 151 2.025155 ACTGGATAGGTGTAGCGACAG 58.975 52.381 0.00 0.00 35.82 3.51
151 152 2.025155 CTGGATAGGTGTAGCGACAGT 58.975 52.381 0.00 0.00 35.82 3.55
152 153 2.427453 CTGGATAGGTGTAGCGACAGTT 59.573 50.000 0.00 0.00 35.82 3.16
153 154 2.165641 TGGATAGGTGTAGCGACAGTTG 59.834 50.000 0.00 0.00 35.82 3.16
154 155 2.165845 GGATAGGTGTAGCGACAGTTGT 59.834 50.000 0.00 0.00 35.82 3.32
155 156 3.368116 GGATAGGTGTAGCGACAGTTGTT 60.368 47.826 0.00 0.00 35.82 2.83
156 157 1.865865 AGGTGTAGCGACAGTTGTTG 58.134 50.000 0.00 0.00 35.82 3.33
165 166 2.635444 CGACAGTTGTTGCTTAAACGG 58.365 47.619 0.00 0.00 42.10 4.44
166 167 2.031191 CGACAGTTGTTGCTTAAACGGT 59.969 45.455 2.58 2.58 42.10 4.83
167 168 3.359654 GACAGTTGTTGCTTAAACGGTG 58.640 45.455 6.51 0.00 42.10 4.94
168 169 2.098443 ACAGTTGTTGCTTAAACGGTGG 59.902 45.455 0.00 0.00 42.10 4.61
169 170 1.066454 AGTTGTTGCTTAAACGGTGGC 59.934 47.619 0.00 0.00 42.10 5.01
170 171 1.066454 GTTGTTGCTTAAACGGTGGCT 59.934 47.619 0.00 0.00 42.10 4.75
171 172 1.394618 TGTTGCTTAAACGGTGGCTT 58.605 45.000 0.00 0.00 42.10 4.35
172 173 1.335496 TGTTGCTTAAACGGTGGCTTC 59.665 47.619 0.00 0.00 42.10 3.86
173 174 1.335496 GTTGCTTAAACGGTGGCTTCA 59.665 47.619 0.00 0.00 0.00 3.02
174 175 1.234821 TGCTTAAACGGTGGCTTCAG 58.765 50.000 0.00 0.00 0.00 3.02
175 176 1.235724 GCTTAAACGGTGGCTTCAGT 58.764 50.000 0.00 0.00 0.00 3.41
176 177 1.197036 GCTTAAACGGTGGCTTCAGTC 59.803 52.381 0.00 0.00 0.00 3.51
177 178 2.767505 CTTAAACGGTGGCTTCAGTCT 58.232 47.619 0.00 0.00 0.00 3.24
178 179 2.922740 TAAACGGTGGCTTCAGTCTT 57.077 45.000 0.00 0.00 0.00 3.01
179 180 2.922740 AAACGGTGGCTTCAGTCTTA 57.077 45.000 0.00 0.00 0.00 2.10
180 181 2.165319 AACGGTGGCTTCAGTCTTAC 57.835 50.000 0.00 0.00 0.00 2.34
181 182 1.339097 ACGGTGGCTTCAGTCTTACT 58.661 50.000 0.00 0.00 0.00 2.24
183 184 1.000955 CGGTGGCTTCAGTCTTACTGT 59.999 52.381 6.93 0.00 46.03 3.55
184 185 2.548067 CGGTGGCTTCAGTCTTACTGTT 60.548 50.000 6.93 0.00 46.03 3.16
185 186 2.808543 GGTGGCTTCAGTCTTACTGTTG 59.191 50.000 6.93 3.17 46.03 3.33
186 187 3.467803 GTGGCTTCAGTCTTACTGTTGT 58.532 45.455 6.93 0.00 46.03 3.32
187 188 4.502604 GGTGGCTTCAGTCTTACTGTTGTA 60.503 45.833 6.93 0.00 46.03 2.41
188 189 5.238583 GTGGCTTCAGTCTTACTGTTGTAT 58.761 41.667 6.93 0.00 46.03 2.29
189 190 5.120830 GTGGCTTCAGTCTTACTGTTGTATG 59.879 44.000 6.93 0.00 46.03 2.39
190 191 5.011635 TGGCTTCAGTCTTACTGTTGTATGA 59.988 40.000 6.93 0.00 46.03 2.15
191 192 5.348997 GGCTTCAGTCTTACTGTTGTATGAC 59.651 44.000 6.93 11.70 46.03 3.06
200 201 9.472361 GTCTTACTGTTGTATGACTTTGTTAGA 57.528 33.333 12.12 0.00 44.06 2.10
205 206 9.950680 ACTGTTGTATGACTTTGTTAGATTTTG 57.049 29.630 0.00 0.00 0.00 2.44
206 207 9.950680 CTGTTGTATGACTTTGTTAGATTTTGT 57.049 29.630 0.00 0.00 0.00 2.83
207 208 9.729023 TGTTGTATGACTTTGTTAGATTTTGTG 57.271 29.630 0.00 0.00 0.00 3.33
208 209 9.180678 GTTGTATGACTTTGTTAGATTTTGTGG 57.819 33.333 0.00 0.00 0.00 4.17
209 210 7.881142 TGTATGACTTTGTTAGATTTTGTGGG 58.119 34.615 0.00 0.00 0.00 4.61
210 211 7.721842 TGTATGACTTTGTTAGATTTTGTGGGA 59.278 33.333 0.00 0.00 0.00 4.37
211 212 7.595819 ATGACTTTGTTAGATTTTGTGGGAA 57.404 32.000 0.00 0.00 0.00 3.97
212 213 7.595819 TGACTTTGTTAGATTTTGTGGGAAT 57.404 32.000 0.00 0.00 0.00 3.01
213 214 8.698973 TGACTTTGTTAGATTTTGTGGGAATA 57.301 30.769 0.00 0.00 0.00 1.75
214 215 9.137459 TGACTTTGTTAGATTTTGTGGGAATAA 57.863 29.630 0.00 0.00 0.00 1.40
227 228 9.660180 TTTTGTGGGAATAATTAATAAAGTGGC 57.340 29.630 0.00 0.00 0.00 5.01
228 229 7.354751 TGTGGGAATAATTAATAAAGTGGCC 57.645 36.000 0.00 0.00 0.00 5.36
229 230 6.039941 TGTGGGAATAATTAATAAAGTGGCCG 59.960 38.462 0.00 0.00 0.00 6.13
230 231 5.010213 TGGGAATAATTAATAAAGTGGCCGC 59.990 40.000 8.71 8.71 0.00 6.53
231 232 5.010213 GGGAATAATTAATAAAGTGGCCGCA 59.990 40.000 20.59 0.00 0.00 5.69
232 233 6.295067 GGGAATAATTAATAAAGTGGCCGCAT 60.295 38.462 20.59 2.72 0.00 4.73
233 234 6.586082 GGAATAATTAATAAAGTGGCCGCATG 59.414 38.462 20.59 0.00 0.00 4.06
234 235 2.861462 TTAATAAAGTGGCCGCATGC 57.139 45.000 20.59 7.91 40.16 4.06
235 236 1.756430 TAATAAAGTGGCCGCATGCA 58.244 45.000 20.59 0.22 43.89 3.96
236 237 1.113788 AATAAAGTGGCCGCATGCAT 58.886 45.000 20.59 0.00 43.89 3.96
237 238 0.670162 ATAAAGTGGCCGCATGCATC 59.330 50.000 20.59 8.10 43.89 3.91
238 239 1.713937 TAAAGTGGCCGCATGCATCG 61.714 55.000 20.59 5.23 43.89 3.84
239 240 4.783621 AGTGGCCGCATGCATCGT 62.784 61.111 20.59 0.00 43.89 3.73
240 241 4.241999 GTGGCCGCATGCATCGTC 62.242 66.667 19.57 6.28 43.89 4.20
243 244 3.945434 GCCGCATGCATCGTCCAG 61.945 66.667 19.57 0.00 40.77 3.86
244 245 2.202919 CCGCATGCATCGTCCAGA 60.203 61.111 19.57 0.00 0.00 3.86
245 246 1.596203 CCGCATGCATCGTCCAGAT 60.596 57.895 19.57 0.00 41.01 2.90
254 255 0.749649 ATCGTCCAGATGCAGAGACC 59.250 55.000 0.00 0.00 38.36 3.85
255 256 0.611896 TCGTCCAGATGCAGAGACCA 60.612 55.000 0.00 0.00 0.00 4.02
256 257 0.179116 CGTCCAGATGCAGAGACCAG 60.179 60.000 0.00 0.00 0.00 4.00
257 258 0.177604 GTCCAGATGCAGAGACCAGG 59.822 60.000 0.00 0.00 0.00 4.45
258 259 0.979709 TCCAGATGCAGAGACCAGGG 60.980 60.000 0.00 0.00 0.00 4.45
259 260 1.525923 CAGATGCAGAGACCAGGGG 59.474 63.158 0.00 0.00 0.00 4.79
260 261 1.081833 AGATGCAGAGACCAGGGGT 59.918 57.895 0.00 0.00 39.44 4.95
270 271 3.443095 ACCAGGGGTCATCATCCTT 57.557 52.632 0.00 0.00 0.00 3.36
271 272 1.686236 ACCAGGGGTCATCATCCTTT 58.314 50.000 0.00 0.00 0.00 3.11
272 273 2.003072 ACCAGGGGTCATCATCCTTTT 58.997 47.619 0.00 0.00 0.00 2.27
273 274 2.024941 ACCAGGGGTCATCATCCTTTTC 60.025 50.000 0.00 0.00 0.00 2.29
274 275 2.243221 CCAGGGGTCATCATCCTTTTCT 59.757 50.000 0.00 0.00 0.00 2.52
275 276 3.459598 CCAGGGGTCATCATCCTTTTCTA 59.540 47.826 0.00 0.00 0.00 2.10
276 277 4.079787 CCAGGGGTCATCATCCTTTTCTAA 60.080 45.833 0.00 0.00 0.00 2.10
277 278 5.509498 CAGGGGTCATCATCCTTTTCTAAA 58.491 41.667 0.00 0.00 0.00 1.85
278 279 5.951747 CAGGGGTCATCATCCTTTTCTAAAA 59.048 40.000 0.00 0.00 0.00 1.52
279 280 6.437162 CAGGGGTCATCATCCTTTTCTAAAAA 59.563 38.462 0.00 0.00 0.00 1.94
359 361 5.363580 ACTTGATGTTTGGTTCACAGGAATT 59.636 36.000 0.00 0.00 35.05 2.17
425 428 8.383318 AGTCACACCACATGAAAATATATAGC 57.617 34.615 0.00 0.00 0.00 2.97
464 467 5.738783 GCCACTAAGGATCTCAGTCTCATTC 60.739 48.000 0.00 0.00 41.22 2.67
469 473 8.040132 ACTAAGGATCTCAGTCTCATTCTTTTG 58.960 37.037 0.00 0.00 0.00 2.44
484 488 8.984891 TCATTCTTTTGTGCATAGTAATTTGG 57.015 30.769 0.00 0.00 0.00 3.28
490 495 8.810652 TTTTGTGCATAGTAATTTGGAAAGAC 57.189 30.769 0.00 0.00 0.00 3.01
540 545 9.748708 TGTGTTTTTCCTTCAAATTGAGATAAG 57.251 29.630 0.00 0.00 0.00 1.73
581 596 4.953940 TTTTTCCTTTGTCCCATTCCTG 57.046 40.909 0.00 0.00 0.00 3.86
586 601 5.068215 TCCTTTGTCCCATTCCTGTTAAA 57.932 39.130 0.00 0.00 0.00 1.52
630 649 8.897872 ATCATCATAGGAAAAATTTGCATTCC 57.102 30.769 10.86 10.86 42.38 3.01
639 658 8.376889 GGAAAAATTTGCATTCCTGTCTTTTA 57.623 30.769 11.37 0.00 39.60 1.52
713 735 3.429410 GGTGTTGGAGATATGCCAAAAGC 60.429 47.826 7.93 8.72 46.18 3.51
993 1020 7.604927 ACGGTATGAACATGTGTAACTACAAAT 59.395 33.333 0.00 0.00 38.04 2.32
1137 1169 3.249189 AAGAACCCAGCTCCGGCA 61.249 61.111 0.00 0.00 41.70 5.69
1360 1392 4.158025 GGTTCATCGAGGACACTAAGAAGA 59.842 45.833 0.00 0.00 0.00 2.87
1459 1491 2.562398 GCATGCATGCGTGTCACA 59.438 55.556 33.99 7.92 44.67 3.58
1544 1584 3.603532 CCCGATTATGATGTGATCCTGG 58.396 50.000 0.00 0.00 0.00 4.45
1713 1760 5.006844 CACGTGTGAGTTTGGTTAATGTACA 59.993 40.000 7.58 0.00 0.00 2.90
1724 1771 5.282129 TGGTTAATGTACATACTCCCTCCA 58.718 41.667 9.21 8.40 0.00 3.86
1743 1790 6.472887 CCTCCATTTCAGTTTACAAGTCCTA 58.527 40.000 0.00 0.00 0.00 2.94
1956 2046 0.445436 GCATCGATGATGGGATTCGC 59.555 55.000 29.20 5.41 40.10 4.70
2042 2710 2.224769 CCAGATGTTGTGGTAGGTGGTT 60.225 50.000 0.00 0.00 0.00 3.67
2081 2969 4.823790 ACACAAGGTTTTAGGCTTTACG 57.176 40.909 0.00 0.00 0.00 3.18
2093 2981 2.993899 AGGCTTTACGAAGTGATCAACG 59.006 45.455 13.85 13.85 45.73 4.10
2098 2986 1.508632 ACGAAGTGATCAACGGTTGG 58.491 50.000 19.91 4.71 42.51 3.77
2099 2987 1.202604 ACGAAGTGATCAACGGTTGGT 60.203 47.619 19.91 13.96 42.51 3.67
2100 2988 2.036217 ACGAAGTGATCAACGGTTGGTA 59.964 45.455 19.91 2.90 42.51 3.25
2101 2989 3.061322 CGAAGTGATCAACGGTTGGTAA 58.939 45.455 19.91 3.85 0.00 2.85
2102 2990 3.682858 CGAAGTGATCAACGGTTGGTAAT 59.317 43.478 19.91 7.10 0.00 1.89
2103 2991 4.435518 CGAAGTGATCAACGGTTGGTAATG 60.436 45.833 19.91 0.00 0.00 1.90
2104 2992 4.280436 AGTGATCAACGGTTGGTAATGA 57.720 40.909 19.91 0.63 0.00 2.57
2105 2993 4.843728 AGTGATCAACGGTTGGTAATGAT 58.156 39.130 19.91 5.78 33.64 2.45
2106 2994 4.635765 AGTGATCAACGGTTGGTAATGATG 59.364 41.667 19.91 0.00 31.24 3.07
2107 2995 4.634004 GTGATCAACGGTTGGTAATGATGA 59.366 41.667 19.91 0.00 31.24 2.92
2108 2996 5.123186 GTGATCAACGGTTGGTAATGATGAA 59.877 40.000 19.91 0.00 31.24 2.57
2109 2997 5.353956 TGATCAACGGTTGGTAATGATGAAG 59.646 40.000 19.91 0.00 31.24 3.02
2110 2998 4.006989 TCAACGGTTGGTAATGATGAAGG 58.993 43.478 19.91 0.00 0.00 3.46
2111 2999 2.999331 ACGGTTGGTAATGATGAAGGG 58.001 47.619 0.00 0.00 0.00 3.95
2112 3000 1.676006 CGGTTGGTAATGATGAAGGGC 59.324 52.381 0.00 0.00 0.00 5.19
2113 3001 1.676006 GGTTGGTAATGATGAAGGGCG 59.324 52.381 0.00 0.00 0.00 6.13
2114 3002 2.365582 GTTGGTAATGATGAAGGGCGT 58.634 47.619 0.00 0.00 0.00 5.68
2115 3003 2.752903 GTTGGTAATGATGAAGGGCGTT 59.247 45.455 0.00 0.00 0.00 4.84
2116 3004 2.364632 TGGTAATGATGAAGGGCGTTG 58.635 47.619 0.00 0.00 0.00 4.10
2117 3005 2.290641 TGGTAATGATGAAGGGCGTTGT 60.291 45.455 0.00 0.00 0.00 3.32
2118 3006 2.752903 GGTAATGATGAAGGGCGTTGTT 59.247 45.455 0.00 0.00 0.00 2.83
2119 3007 3.942748 GGTAATGATGAAGGGCGTTGTTA 59.057 43.478 0.00 0.00 0.00 2.41
2120 3008 4.201881 GGTAATGATGAAGGGCGTTGTTAC 60.202 45.833 0.00 0.00 0.00 2.50
2121 3009 1.816074 TGATGAAGGGCGTTGTTACC 58.184 50.000 0.00 0.00 0.00 2.85
2122 3010 1.072489 TGATGAAGGGCGTTGTTACCA 59.928 47.619 0.00 0.00 0.00 3.25
2123 3011 2.156098 GATGAAGGGCGTTGTTACCAA 58.844 47.619 0.00 0.00 0.00 3.67
2124 3012 2.279935 TGAAGGGCGTTGTTACCAAT 57.720 45.000 0.00 0.00 32.11 3.16
2125 3013 2.156098 TGAAGGGCGTTGTTACCAATC 58.844 47.619 0.00 0.00 32.11 2.67
2126 3014 1.129811 GAAGGGCGTTGTTACCAATCG 59.870 52.381 0.00 0.00 32.11 3.34
2127 3015 0.035739 AGGGCGTTGTTACCAATCGT 59.964 50.000 0.00 0.00 32.11 3.73
2128 3016 0.876399 GGGCGTTGTTACCAATCGTT 59.124 50.000 0.00 0.00 32.11 3.85
2129 3017 2.075338 GGGCGTTGTTACCAATCGTTA 58.925 47.619 0.00 0.00 32.11 3.18
2130 3018 2.483491 GGGCGTTGTTACCAATCGTTAA 59.517 45.455 0.00 0.00 32.11 2.01
2131 3019 3.058363 GGGCGTTGTTACCAATCGTTAAA 60.058 43.478 0.00 0.00 32.11 1.52
2132 3020 3.907788 GGCGTTGTTACCAATCGTTAAAC 59.092 43.478 0.00 0.00 32.11 2.01
2133 3021 3.594885 GCGTTGTTACCAATCGTTAAACG 59.405 43.478 0.00 0.00 44.19 3.60
2161 3049 9.774742 GGATCCTCGTTTAAATTTCATATATGC 57.225 33.333 3.84 0.00 0.00 3.14
2164 3052 8.999431 TCCTCGTTTAAATTTCATATATGCTCC 58.001 33.333 7.92 0.00 0.00 4.70
2165 3053 7.957484 CCTCGTTTAAATTTCATATATGCTCCG 59.043 37.037 7.92 1.02 0.00 4.63
2166 3054 8.596271 TCGTTTAAATTTCATATATGCTCCGA 57.404 30.769 7.92 3.08 0.00 4.55
2167 3055 8.708742 TCGTTTAAATTTCATATATGCTCCGAG 58.291 33.333 7.92 0.00 0.00 4.63
2168 3056 7.957484 CGTTTAAATTTCATATATGCTCCGAGG 59.043 37.037 7.92 0.00 0.00 4.63
2169 3057 7.921786 TTAAATTTCATATATGCTCCGAGGG 57.078 36.000 7.92 0.00 0.00 4.30
2170 3058 3.334583 TTTCATATATGCTCCGAGGGC 57.665 47.619 7.92 0.00 0.00 5.19
2171 3059 0.817654 TCATATATGCTCCGAGGGCG 59.182 55.000 7.92 0.00 37.24 6.13
2172 3060 0.532573 CATATATGCTCCGAGGGCGT 59.467 55.000 0.00 0.00 35.23 5.68
2173 3061 1.066858 CATATATGCTCCGAGGGCGTT 60.067 52.381 0.00 0.00 35.23 4.84
2174 3062 0.317160 TATATGCTCCGAGGGCGTTG 59.683 55.000 0.00 0.00 35.23 4.10
2175 3063 1.686325 ATATGCTCCGAGGGCGTTGT 61.686 55.000 0.00 0.00 35.23 3.32
2176 3064 2.572095 TATGCTCCGAGGGCGTTGTG 62.572 60.000 0.00 0.00 35.23 3.33
2177 3065 4.681978 GCTCCGAGGGCGTTGTGT 62.682 66.667 0.00 0.00 35.23 3.72
2178 3066 2.030562 CTCCGAGGGCGTTGTGTT 59.969 61.111 0.00 0.00 35.23 3.32
2179 3067 1.597027 CTCCGAGGGCGTTGTGTTT 60.597 57.895 0.00 0.00 35.23 2.83
2180 3068 0.320073 CTCCGAGGGCGTTGTGTTTA 60.320 55.000 0.00 0.00 35.23 2.01
2181 3069 0.106335 TCCGAGGGCGTTGTGTTTAA 59.894 50.000 0.00 0.00 35.23 1.52
2182 3070 0.945813 CCGAGGGCGTTGTGTTTAAA 59.054 50.000 0.00 0.00 35.23 1.52
2183 3071 1.334329 CCGAGGGCGTTGTGTTTAAAC 60.334 52.381 11.54 11.54 35.23 2.01
2191 3079 3.955771 GTTGTGTTTAAACGAGGAGCA 57.044 42.857 13.45 3.35 0.00 4.26
2192 3080 4.483476 GTTGTGTTTAAACGAGGAGCAT 57.517 40.909 13.45 0.00 0.00 3.79
2193 3081 5.600908 GTTGTGTTTAAACGAGGAGCATA 57.399 39.130 13.45 0.00 0.00 3.14
2194 3082 6.178239 GTTGTGTTTAAACGAGGAGCATAT 57.822 37.500 13.45 0.00 0.00 1.78
2195 3083 7.298507 GTTGTGTTTAAACGAGGAGCATATA 57.701 36.000 13.45 0.00 0.00 0.86
2196 3084 7.916552 GTTGTGTTTAAACGAGGAGCATATAT 58.083 34.615 13.45 0.00 0.00 0.86
2197 3085 9.037737 GTTGTGTTTAAACGAGGAGCATATATA 57.962 33.333 13.45 0.00 0.00 0.86
2198 3086 9.602568 TTGTGTTTAAACGAGGAGCATATATAA 57.397 29.630 13.45 0.00 0.00 0.98
2199 3087 9.037737 TGTGTTTAAACGAGGAGCATATATAAC 57.962 33.333 13.45 1.39 0.00 1.89
2200 3088 9.037737 GTGTTTAAACGAGGAGCATATATAACA 57.962 33.333 13.45 0.00 0.00 2.41
2201 3089 9.602568 TGTTTAAACGAGGAGCATATATAACAA 57.397 29.630 13.45 0.00 0.00 2.83
2202 3090 9.859692 GTTTAAACGAGGAGCATATATAACAAC 57.140 33.333 1.89 0.00 0.00 3.32
2203 3091 6.764877 AAACGAGGAGCATATATAACAACG 57.235 37.500 0.00 0.00 0.00 4.10
2204 3092 4.235360 ACGAGGAGCATATATAACAACGC 58.765 43.478 0.00 0.00 0.00 4.84
2205 3093 3.612860 CGAGGAGCATATATAACAACGCC 59.387 47.826 0.00 0.00 0.00 5.68
2206 3094 3.933332 GAGGAGCATATATAACAACGCCC 59.067 47.826 0.00 0.00 0.00 6.13
2207 3095 3.583086 AGGAGCATATATAACAACGCCCT 59.417 43.478 0.00 0.00 0.00 5.19
2208 3096 4.041691 AGGAGCATATATAACAACGCCCTT 59.958 41.667 0.00 0.00 0.00 3.95
2209 3097 4.154195 GGAGCATATATAACAACGCCCTTG 59.846 45.833 0.00 0.00 35.77 3.61
2210 3098 4.714632 AGCATATATAACAACGCCCTTGT 58.285 39.130 0.00 0.00 45.68 3.16
2211 3099 4.515191 AGCATATATAACAACGCCCTTGTG 59.485 41.667 0.00 0.00 42.70 3.33
2212 3100 4.274950 GCATATATAACAACGCCCTTGTGT 59.725 41.667 0.00 0.00 42.70 3.72
2213 3101 5.220970 GCATATATAACAACGCCCTTGTGTT 60.221 40.000 0.00 0.00 42.70 3.32
2214 3102 6.679392 GCATATATAACAACGCCCTTGTGTTT 60.679 38.462 0.00 0.00 42.70 2.83
2215 3103 7.467539 GCATATATAACAACGCCCTTGTGTTTA 60.468 37.037 0.00 0.00 42.70 2.01
2216 3104 6.821031 ATATAACAACGCCCTTGTGTTTAA 57.179 33.333 0.00 0.00 42.70 1.52
2217 3105 3.870633 AACAACGCCCTTGTGTTTAAA 57.129 38.095 0.00 0.00 42.70 1.52
2218 3106 3.153676 ACAACGCCCTTGTGTTTAAAC 57.846 42.857 11.54 11.54 42.38 2.01
2219 3107 2.113289 CAACGCCCTTGTGTTTAAACG 58.887 47.619 13.45 1.81 42.38 3.60
2220 3108 1.666054 ACGCCCTTGTGTTTAAACGA 58.334 45.000 13.45 0.00 0.00 3.85
2221 3109 1.600485 ACGCCCTTGTGTTTAAACGAG 59.400 47.619 13.45 10.58 0.00 4.18
2227 3115 4.749245 CTTGTGTTTAAACGAGGAGCAT 57.251 40.909 13.45 0.00 0.00 3.79
2228 3116 5.856126 CTTGTGTTTAAACGAGGAGCATA 57.144 39.130 13.45 0.00 0.00 3.14
2229 3117 6.422776 CTTGTGTTTAAACGAGGAGCATAT 57.577 37.500 13.45 0.00 0.00 1.78
2230 3118 7.534085 CTTGTGTTTAAACGAGGAGCATATA 57.466 36.000 13.45 0.00 0.00 0.86
2231 3119 8.142994 CTTGTGTTTAAACGAGGAGCATATAT 57.857 34.615 13.45 0.00 0.00 0.86
2232 3120 7.477144 TGTGTTTAAACGAGGAGCATATATG 57.523 36.000 13.45 8.45 0.00 1.78
2233 3121 7.269316 TGTGTTTAAACGAGGAGCATATATGA 58.731 34.615 17.10 0.00 0.00 2.15
2234 3122 7.223971 TGTGTTTAAACGAGGAGCATATATGAC 59.776 37.037 17.10 9.00 0.00 3.06
2235 3123 7.223971 GTGTTTAAACGAGGAGCATATATGACA 59.776 37.037 17.10 4.18 0.00 3.58
2236 3124 7.438160 TGTTTAAACGAGGAGCATATATGACAG 59.562 37.037 17.10 6.66 0.00 3.51
2237 3125 3.584406 ACGAGGAGCATATATGACAGC 57.416 47.619 17.10 0.61 0.00 4.40
2238 3126 2.893489 ACGAGGAGCATATATGACAGCA 59.107 45.455 17.10 0.00 0.00 4.41
2239 3127 3.321968 ACGAGGAGCATATATGACAGCAA 59.678 43.478 17.10 0.00 0.00 3.91
2240 3128 4.202253 ACGAGGAGCATATATGACAGCAAA 60.202 41.667 17.10 0.00 0.00 3.68
2241 3129 4.934001 CGAGGAGCATATATGACAGCAAAT 59.066 41.667 17.10 0.00 0.00 2.32
2242 3130 5.410746 CGAGGAGCATATATGACAGCAAATT 59.589 40.000 17.10 0.00 0.00 1.82
2243 3131 6.072838 CGAGGAGCATATATGACAGCAAATTT 60.073 38.462 17.10 0.00 0.00 1.82
2244 3132 7.118245 CGAGGAGCATATATGACAGCAAATTTA 59.882 37.037 17.10 0.00 0.00 1.40
2245 3133 8.696043 AGGAGCATATATGACAGCAAATTTAA 57.304 30.769 17.10 0.00 0.00 1.52
2246 3134 9.135189 AGGAGCATATATGACAGCAAATTTAAA 57.865 29.630 17.10 0.00 0.00 1.52
2247 3135 9.185192 GGAGCATATATGACAGCAAATTTAAAC 57.815 33.333 17.10 0.00 0.00 2.01
2248 3136 8.786937 AGCATATATGACAGCAAATTTAAACG 57.213 30.769 17.10 0.00 0.00 3.60
2249 3137 7.862372 AGCATATATGACAGCAAATTTAAACGG 59.138 33.333 17.10 0.00 0.00 4.44
2250 3138 7.114811 GCATATATGACAGCAAATTTAAACGGG 59.885 37.037 17.10 0.00 0.00 5.28
2251 3139 3.019933 TGACAGCAAATTTAAACGGGC 57.980 42.857 0.00 0.00 0.00 6.13
2252 3140 2.362397 TGACAGCAAATTTAAACGGGCA 59.638 40.909 8.83 0.00 0.00 5.36
2253 3141 3.181475 TGACAGCAAATTTAAACGGGCAA 60.181 39.130 8.83 0.00 0.00 4.52
2254 3142 3.389221 ACAGCAAATTTAAACGGGCAAG 58.611 40.909 8.83 4.55 0.00 4.01
2255 3143 3.181470 ACAGCAAATTTAAACGGGCAAGT 60.181 39.130 8.83 5.02 0.00 3.16
2256 3144 3.807071 CAGCAAATTTAAACGGGCAAGTT 59.193 39.130 8.83 0.00 35.59 2.66
2257 3145 4.272261 CAGCAAATTTAAACGGGCAAGTTT 59.728 37.500 13.38 13.38 45.22 2.66
2258 3146 5.463724 CAGCAAATTTAAACGGGCAAGTTTA 59.536 36.000 11.72 11.72 43.30 2.01
2263 3151 4.889832 TTAAACGGGCAAGTTTAAACGA 57.110 36.364 20.36 5.72 46.92 3.85
2264 3152 3.343380 AAACGGGCAAGTTTAAACGAG 57.657 42.857 12.54 10.13 41.93 4.18
2265 3153 1.232119 ACGGGCAAGTTTAAACGAGG 58.768 50.000 12.54 7.49 0.00 4.63
2266 3154 1.202675 ACGGGCAAGTTTAAACGAGGA 60.203 47.619 12.54 0.00 0.00 3.71
2267 3155 2.081462 CGGGCAAGTTTAAACGAGGAT 58.919 47.619 12.54 0.00 0.00 3.24
2268 3156 2.095372 CGGGCAAGTTTAAACGAGGATC 59.905 50.000 12.54 2.59 0.00 3.36
2287 3175 7.062749 AGGATCGGAGTAATAATGTAAGCAA 57.937 36.000 0.00 0.00 0.00 3.91
2352 3240 6.339587 TCCCTGGTTTGAAAATTACATGAC 57.660 37.500 0.00 0.00 0.00 3.06
2358 3246 9.405587 CTGGTTTGAAAATTACATGACGTTATT 57.594 29.630 0.00 0.00 0.00 1.40
2383 3271 6.801539 ATACCAATCATTAGTATGCAACCG 57.198 37.500 0.00 0.00 0.00 4.44
2384 3272 3.315191 ACCAATCATTAGTATGCAACCGC 59.685 43.478 0.00 0.00 39.24 5.68
2385 3273 3.304659 CCAATCATTAGTATGCAACCGCC 60.305 47.826 0.00 0.00 37.32 6.13
2386 3274 3.492102 ATCATTAGTATGCAACCGCCT 57.508 42.857 0.00 0.00 37.32 5.52
2387 3275 3.275617 TCATTAGTATGCAACCGCCTT 57.724 42.857 0.00 0.00 37.32 4.35
2388 3276 3.202906 TCATTAGTATGCAACCGCCTTC 58.797 45.455 0.00 0.00 37.32 3.46
2389 3277 2.032680 TTAGTATGCAACCGCCTTCC 57.967 50.000 0.00 0.00 37.32 3.46
2390 3278 0.179468 TAGTATGCAACCGCCTTCCC 59.821 55.000 0.00 0.00 37.32 3.97
2391 3279 1.077716 GTATGCAACCGCCTTCCCT 60.078 57.895 0.00 0.00 37.32 4.20
2392 3280 1.077787 TATGCAACCGCCTTCCCTG 60.078 57.895 0.00 0.00 37.32 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.701604 CTACCAGTCCGGCGCACTC 62.702 68.421 10.83 0.00 39.03 3.51
2 3 3.760035 CTACCAGTCCGGCGCACT 61.760 66.667 10.83 0.00 39.03 4.40
3 4 4.814294 CCTACCAGTCCGGCGCAC 62.814 72.222 10.83 0.00 39.03 5.34
5 6 4.814294 CACCTACCAGTCCGGCGC 62.814 72.222 0.00 0.00 39.03 6.53
6 7 4.814294 GCACCTACCAGTCCGGCG 62.814 72.222 0.00 0.00 39.03 6.46
7 8 4.468689 GGCACCTACCAGTCCGGC 62.469 72.222 0.00 0.00 39.03 6.13
8 9 2.683933 AGGCACCTACCAGTCCGG 60.684 66.667 0.00 0.00 42.50 5.14
9 10 1.330655 ATGAGGCACCTACCAGTCCG 61.331 60.000 0.00 0.00 0.00 4.79
10 11 1.413077 GTATGAGGCACCTACCAGTCC 59.587 57.143 0.00 0.00 0.00 3.85
11 12 1.413077 GGTATGAGGCACCTACCAGTC 59.587 57.143 10.61 0.00 38.85 3.51
12 13 1.273609 TGGTATGAGGCACCTACCAGT 60.274 52.381 13.43 0.00 42.09 4.00
13 14 1.496060 TGGTATGAGGCACCTACCAG 58.504 55.000 13.43 0.00 42.09 4.00
14 15 1.496060 CTGGTATGAGGCACCTACCA 58.504 55.000 15.80 15.80 43.76 3.25
15 16 0.759346 CCTGGTATGAGGCACCTACC 59.241 60.000 8.97 8.97 39.26 3.18
23 24 2.109799 CGCCTGCCTGGTATGAGG 59.890 66.667 0.00 0.00 38.35 3.86
24 25 1.227380 GACGCCTGCCTGGTATGAG 60.227 63.158 0.00 0.00 38.35 2.90
25 26 2.731571 GGACGCCTGCCTGGTATGA 61.732 63.158 0.00 0.00 38.35 2.15
26 27 2.203070 GGACGCCTGCCTGGTATG 60.203 66.667 0.00 0.00 38.35 2.39
27 28 2.365635 AGGACGCCTGCCTGGTAT 60.366 61.111 0.00 0.00 38.35 2.73
36 37 3.637273 GTCCCAACCAGGACGCCT 61.637 66.667 0.00 0.00 46.57 5.52
52 53 6.875972 ACCTAAACATCTAAGACATGAGGT 57.124 37.500 0.00 0.00 0.00 3.85
53 54 7.066284 CCAAACCTAAACATCTAAGACATGAGG 59.934 40.741 0.00 0.00 0.00 3.86
54 55 7.414540 GCCAAACCTAAACATCTAAGACATGAG 60.415 40.741 0.00 0.00 0.00 2.90
55 56 6.374333 GCCAAACCTAAACATCTAAGACATGA 59.626 38.462 0.00 0.00 0.00 3.07
56 57 6.375455 AGCCAAACCTAAACATCTAAGACATG 59.625 38.462 0.00 0.00 0.00 3.21
57 58 6.375455 CAGCCAAACCTAAACATCTAAGACAT 59.625 38.462 0.00 0.00 0.00 3.06
58 59 5.705441 CAGCCAAACCTAAACATCTAAGACA 59.295 40.000 0.00 0.00 0.00 3.41
59 60 5.392057 GCAGCCAAACCTAAACATCTAAGAC 60.392 44.000 0.00 0.00 0.00 3.01
60 61 4.700213 GCAGCCAAACCTAAACATCTAAGA 59.300 41.667 0.00 0.00 0.00 2.10
61 62 4.437390 CGCAGCCAAACCTAAACATCTAAG 60.437 45.833 0.00 0.00 0.00 2.18
62 63 3.438781 CGCAGCCAAACCTAAACATCTAA 59.561 43.478 0.00 0.00 0.00 2.10
63 64 3.006940 CGCAGCCAAACCTAAACATCTA 58.993 45.455 0.00 0.00 0.00 1.98
64 65 1.812571 CGCAGCCAAACCTAAACATCT 59.187 47.619 0.00 0.00 0.00 2.90
65 66 1.810151 TCGCAGCCAAACCTAAACATC 59.190 47.619 0.00 0.00 0.00 3.06
66 67 1.904287 TCGCAGCCAAACCTAAACAT 58.096 45.000 0.00 0.00 0.00 2.71
67 68 1.539388 CATCGCAGCCAAACCTAAACA 59.461 47.619 0.00 0.00 0.00 2.83
68 69 1.539827 ACATCGCAGCCAAACCTAAAC 59.460 47.619 0.00 0.00 0.00 2.01
69 70 1.810151 GACATCGCAGCCAAACCTAAA 59.190 47.619 0.00 0.00 0.00 1.85
70 71 1.003118 AGACATCGCAGCCAAACCTAA 59.997 47.619 0.00 0.00 0.00 2.69
71 72 0.613260 AGACATCGCAGCCAAACCTA 59.387 50.000 0.00 0.00 0.00 3.08
72 73 0.957395 CAGACATCGCAGCCAAACCT 60.957 55.000 0.00 0.00 0.00 3.50
73 74 1.237285 ACAGACATCGCAGCCAAACC 61.237 55.000 0.00 0.00 0.00 3.27
74 75 0.593128 AACAGACATCGCAGCCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
75 76 1.001487 CAAACAGACATCGCAGCCAAA 60.001 47.619 0.00 0.00 0.00 3.28
76 77 0.592637 CAAACAGACATCGCAGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
77 78 1.236616 CCAAACAGACATCGCAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
78 79 1.237285 ACCAAACAGACATCGCAGCC 61.237 55.000 0.00 0.00 0.00 4.85
79 80 1.438651 TACCAAACAGACATCGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
80 81 4.271049 CCTAATACCAAACAGACATCGCAG 59.729 45.833 0.00 0.00 0.00 5.18
81 82 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
82 83 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
83 84 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
84 85 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
85 86 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
86 87 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
87 88 3.054655 TCTGGGCCTAATACCAAACAGAC 60.055 47.826 4.53 0.00 36.09 3.51
88 89 3.054655 GTCTGGGCCTAATACCAAACAGA 60.055 47.826 4.53 0.00 36.09 3.41
89 90 3.054361 AGTCTGGGCCTAATACCAAACAG 60.054 47.826 4.53 0.00 36.09 3.16
90 91 2.916934 AGTCTGGGCCTAATACCAAACA 59.083 45.455 4.53 0.00 36.09 2.83
91 92 3.646736 AGTCTGGGCCTAATACCAAAC 57.353 47.619 4.53 0.00 36.09 2.93
92 93 4.972568 TGATAGTCTGGGCCTAATACCAAA 59.027 41.667 4.53 0.00 36.09 3.28
93 94 4.562767 TGATAGTCTGGGCCTAATACCAA 58.437 43.478 4.53 0.00 36.09 3.67
94 95 4.160329 CTGATAGTCTGGGCCTAATACCA 58.840 47.826 4.53 0.00 35.05 3.25
95 96 3.055747 GCTGATAGTCTGGGCCTAATACC 60.056 52.174 4.53 0.00 0.00 2.73
96 97 3.367498 CGCTGATAGTCTGGGCCTAATAC 60.367 52.174 4.53 0.00 0.00 1.89
97 98 2.826128 CGCTGATAGTCTGGGCCTAATA 59.174 50.000 4.53 0.00 0.00 0.98
98 99 1.620819 CGCTGATAGTCTGGGCCTAAT 59.379 52.381 4.53 0.00 0.00 1.73
99 100 1.040646 CGCTGATAGTCTGGGCCTAA 58.959 55.000 4.53 0.00 0.00 2.69
100 101 1.464376 GCGCTGATAGTCTGGGCCTA 61.464 60.000 4.53 0.00 44.44 3.93
101 102 2.801631 GCGCTGATAGTCTGGGCCT 61.802 63.158 4.53 0.00 44.44 5.19
102 103 2.280457 GCGCTGATAGTCTGGGCC 60.280 66.667 0.00 0.00 44.44 5.80
104 105 2.423446 GGGCGCTGATAGTCTGGG 59.577 66.667 7.64 0.00 0.00 4.45
105 106 1.690219 AAGGGGCGCTGATAGTCTGG 61.690 60.000 7.64 0.00 0.00 3.86
106 107 0.249657 GAAGGGGCGCTGATAGTCTG 60.250 60.000 7.64 0.00 0.00 3.51
107 108 0.687757 TGAAGGGGCGCTGATAGTCT 60.688 55.000 7.64 0.00 0.00 3.24
108 109 0.394565 ATGAAGGGGCGCTGATAGTC 59.605 55.000 7.64 0.00 0.00 2.59
109 110 0.394565 GATGAAGGGGCGCTGATAGT 59.605 55.000 7.64 0.00 0.00 2.12
110 111 0.394192 TGATGAAGGGGCGCTGATAG 59.606 55.000 7.64 0.00 0.00 2.08
111 112 0.836606 TTGATGAAGGGGCGCTGATA 59.163 50.000 7.64 0.00 0.00 2.15
112 113 0.749454 GTTGATGAAGGGGCGCTGAT 60.749 55.000 7.64 0.00 0.00 2.90
113 114 1.377202 GTTGATGAAGGGGCGCTGA 60.377 57.895 7.64 0.00 0.00 4.26
114 115 1.377725 AGTTGATGAAGGGGCGCTG 60.378 57.895 7.64 0.00 0.00 5.18
115 116 1.377725 CAGTTGATGAAGGGGCGCT 60.378 57.895 7.64 0.00 0.00 5.92
116 117 2.409870 CCAGTTGATGAAGGGGCGC 61.410 63.158 0.00 0.00 0.00 6.53
117 118 0.107017 ATCCAGTTGATGAAGGGGCG 60.107 55.000 0.00 0.00 30.54 6.13
118 119 2.487986 CCTATCCAGTTGATGAAGGGGC 60.488 54.545 0.00 0.00 34.76 5.80
119 120 2.780010 ACCTATCCAGTTGATGAAGGGG 59.220 50.000 0.00 0.00 34.76 4.79
120 121 3.200825 ACACCTATCCAGTTGATGAAGGG 59.799 47.826 0.00 0.00 34.76 3.95
121 122 4.494091 ACACCTATCCAGTTGATGAAGG 57.506 45.455 0.00 0.00 34.76 3.46
122 123 5.053145 GCTACACCTATCCAGTTGATGAAG 58.947 45.833 0.00 0.00 34.76 3.02
123 124 4.441495 CGCTACACCTATCCAGTTGATGAA 60.441 45.833 0.00 0.00 34.76 2.57
124 125 3.068165 CGCTACACCTATCCAGTTGATGA 59.932 47.826 0.00 0.00 34.76 2.92
125 126 3.068165 TCGCTACACCTATCCAGTTGATG 59.932 47.826 0.00 0.00 34.76 3.07
126 127 3.068307 GTCGCTACACCTATCCAGTTGAT 59.932 47.826 0.00 0.00 37.49 2.57
127 128 2.426024 GTCGCTACACCTATCCAGTTGA 59.574 50.000 0.00 0.00 0.00 3.18
128 129 2.165641 TGTCGCTACACCTATCCAGTTG 59.834 50.000 0.00 0.00 0.00 3.16
129 130 2.427453 CTGTCGCTACACCTATCCAGTT 59.573 50.000 0.00 0.00 0.00 3.16
130 131 2.025155 CTGTCGCTACACCTATCCAGT 58.975 52.381 0.00 0.00 0.00 4.00
131 132 2.025155 ACTGTCGCTACACCTATCCAG 58.975 52.381 0.00 0.00 0.00 3.86
132 133 2.139323 ACTGTCGCTACACCTATCCA 57.861 50.000 0.00 0.00 0.00 3.41
133 134 2.165845 ACAACTGTCGCTACACCTATCC 59.834 50.000 0.00 0.00 0.00 2.59
134 135 3.505464 ACAACTGTCGCTACACCTATC 57.495 47.619 0.00 0.00 0.00 2.08
135 136 3.585862 CAACAACTGTCGCTACACCTAT 58.414 45.455 0.00 0.00 0.00 2.57
136 137 2.864882 GCAACAACTGTCGCTACACCTA 60.865 50.000 0.00 0.00 0.00 3.08
137 138 1.865865 CAACAACTGTCGCTACACCT 58.134 50.000 0.00 0.00 0.00 4.00
138 139 0.234884 GCAACAACTGTCGCTACACC 59.765 55.000 0.00 0.00 0.00 4.16
139 140 1.217882 AGCAACAACTGTCGCTACAC 58.782 50.000 0.00 0.00 31.60 2.90
140 141 1.948104 AAGCAACAACTGTCGCTACA 58.052 45.000 0.00 0.00 33.45 2.74
141 142 4.209112 GTTTAAGCAACAACTGTCGCTAC 58.791 43.478 0.00 0.00 35.18 3.58
142 143 3.060138 CGTTTAAGCAACAACTGTCGCTA 60.060 43.478 0.00 0.00 34.68 4.26
143 144 2.286184 CGTTTAAGCAACAACTGTCGCT 60.286 45.455 0.00 0.00 34.68 4.93
144 145 2.034076 CGTTTAAGCAACAACTGTCGC 58.966 47.619 0.00 0.00 34.68 5.19
145 146 2.031191 ACCGTTTAAGCAACAACTGTCG 59.969 45.455 0.00 0.00 34.68 4.35
146 147 3.359654 CACCGTTTAAGCAACAACTGTC 58.640 45.455 0.00 0.00 34.68 3.51
147 148 2.098443 CCACCGTTTAAGCAACAACTGT 59.902 45.455 0.00 0.00 34.68 3.55
148 149 2.726633 CCACCGTTTAAGCAACAACTG 58.273 47.619 0.00 0.00 34.68 3.16
149 150 1.066454 GCCACCGTTTAAGCAACAACT 59.934 47.619 0.00 0.00 34.68 3.16
150 151 1.066454 AGCCACCGTTTAAGCAACAAC 59.934 47.619 0.00 0.00 34.68 3.32
151 152 1.394618 AGCCACCGTTTAAGCAACAA 58.605 45.000 0.00 0.00 34.68 2.83
152 153 1.335496 GAAGCCACCGTTTAAGCAACA 59.665 47.619 0.00 0.00 34.68 3.33
153 154 1.335496 TGAAGCCACCGTTTAAGCAAC 59.665 47.619 0.00 0.00 0.00 4.17
154 155 1.606668 CTGAAGCCACCGTTTAAGCAA 59.393 47.619 0.00 0.00 0.00 3.91
155 156 1.234821 CTGAAGCCACCGTTTAAGCA 58.765 50.000 0.00 0.00 0.00 3.91
156 157 1.197036 GACTGAAGCCACCGTTTAAGC 59.803 52.381 0.00 0.00 0.00 3.09
157 158 2.767505 AGACTGAAGCCACCGTTTAAG 58.232 47.619 0.00 0.00 0.00 1.85
158 159 2.922740 AGACTGAAGCCACCGTTTAA 57.077 45.000 0.00 0.00 0.00 1.52
159 160 2.922740 AAGACTGAAGCCACCGTTTA 57.077 45.000 0.00 0.00 0.00 2.01
160 161 2.104281 AGTAAGACTGAAGCCACCGTTT 59.896 45.455 0.00 0.00 0.00 3.60
161 162 1.692519 AGTAAGACTGAAGCCACCGTT 59.307 47.619 0.00 0.00 0.00 4.44
162 163 1.339097 AGTAAGACTGAAGCCACCGT 58.661 50.000 0.00 0.00 0.00 4.83
173 174 9.477484 CTAACAAAGTCATACAACAGTAAGACT 57.523 33.333 7.48 7.48 44.26 3.24
174 175 9.472361 TCTAACAAAGTCATACAACAGTAAGAC 57.528 33.333 3.57 3.57 36.95 3.01
179 180 9.950680 CAAAATCTAACAAAGTCATACAACAGT 57.049 29.630 0.00 0.00 0.00 3.55
180 181 9.950680 ACAAAATCTAACAAAGTCATACAACAG 57.049 29.630 0.00 0.00 0.00 3.16
181 182 9.729023 CACAAAATCTAACAAAGTCATACAACA 57.271 29.630 0.00 0.00 0.00 3.33
182 183 9.180678 CCACAAAATCTAACAAAGTCATACAAC 57.819 33.333 0.00 0.00 0.00 3.32
183 184 8.356657 CCCACAAAATCTAACAAAGTCATACAA 58.643 33.333 0.00 0.00 0.00 2.41
184 185 7.721842 TCCCACAAAATCTAACAAAGTCATACA 59.278 33.333 0.00 0.00 0.00 2.29
185 186 8.106247 TCCCACAAAATCTAACAAAGTCATAC 57.894 34.615 0.00 0.00 0.00 2.39
186 187 8.698973 TTCCCACAAAATCTAACAAAGTCATA 57.301 30.769 0.00 0.00 0.00 2.15
187 188 7.595819 TTCCCACAAAATCTAACAAAGTCAT 57.404 32.000 0.00 0.00 0.00 3.06
188 189 7.595819 ATTCCCACAAAATCTAACAAAGTCA 57.404 32.000 0.00 0.00 0.00 3.41
201 202 9.660180 GCCACTTTATTAATTATTCCCACAAAA 57.340 29.630 0.00 0.00 0.00 2.44
202 203 8.261522 GGCCACTTTATTAATTATTCCCACAAA 58.738 33.333 0.00 0.00 0.00 2.83
203 204 7.416890 CGGCCACTTTATTAATTATTCCCACAA 60.417 37.037 2.24 0.00 0.00 3.33
204 205 6.039941 CGGCCACTTTATTAATTATTCCCACA 59.960 38.462 2.24 0.00 0.00 4.17
205 206 6.443792 CGGCCACTTTATTAATTATTCCCAC 58.556 40.000 2.24 0.00 0.00 4.61
206 207 5.010213 GCGGCCACTTTATTAATTATTCCCA 59.990 40.000 2.24 0.00 0.00 4.37
207 208 5.010213 TGCGGCCACTTTATTAATTATTCCC 59.990 40.000 2.24 0.00 0.00 3.97
208 209 6.079424 TGCGGCCACTTTATTAATTATTCC 57.921 37.500 2.24 0.00 0.00 3.01
209 210 6.089417 GCATGCGGCCACTTTATTAATTATTC 59.911 38.462 0.00 0.00 36.11 1.75
210 211 5.925969 GCATGCGGCCACTTTATTAATTATT 59.074 36.000 0.00 0.00 36.11 1.40
211 212 5.010516 TGCATGCGGCCACTTTATTAATTAT 59.989 36.000 14.09 0.00 43.89 1.28
212 213 4.339530 TGCATGCGGCCACTTTATTAATTA 59.660 37.500 14.09 0.00 43.89 1.40
213 214 3.131933 TGCATGCGGCCACTTTATTAATT 59.868 39.130 14.09 0.00 43.89 1.40
214 215 2.692557 TGCATGCGGCCACTTTATTAAT 59.307 40.909 14.09 0.00 43.89 1.40
215 216 2.095461 TGCATGCGGCCACTTTATTAA 58.905 42.857 14.09 0.00 43.89 1.40
216 217 1.756430 TGCATGCGGCCACTTTATTA 58.244 45.000 14.09 0.00 43.89 0.98
217 218 1.067516 GATGCATGCGGCCACTTTATT 59.932 47.619 14.09 0.00 43.89 1.40
218 219 0.670162 GATGCATGCGGCCACTTTAT 59.330 50.000 14.09 0.00 43.89 1.40
219 220 1.713937 CGATGCATGCGGCCACTTTA 61.714 55.000 14.09 0.00 43.89 1.85
220 221 2.887360 GATGCATGCGGCCACTTT 59.113 55.556 14.09 0.00 43.89 2.66
221 222 3.511595 CGATGCATGCGGCCACTT 61.512 61.111 14.09 0.00 43.89 3.16
222 223 4.783621 ACGATGCATGCGGCCACT 62.784 61.111 14.09 0.00 43.89 4.00
223 224 4.241999 GACGATGCATGCGGCCAC 62.242 66.667 14.09 0.00 43.89 5.01
226 227 3.945434 CTGGACGATGCATGCGGC 61.945 66.667 14.09 10.01 45.13 6.53
227 228 1.596203 ATCTGGACGATGCATGCGG 60.596 57.895 14.09 7.44 0.00 5.69
228 229 1.568025 CATCTGGACGATGCATGCG 59.432 57.895 14.09 10.48 42.75 4.73
235 236 0.749649 GGTCTCTGCATCTGGACGAT 59.250 55.000 0.00 0.00 0.00 3.73
236 237 0.611896 TGGTCTCTGCATCTGGACGA 60.612 55.000 0.00 0.00 0.00 4.20
237 238 0.179116 CTGGTCTCTGCATCTGGACG 60.179 60.000 0.00 0.00 0.00 4.79
238 239 0.177604 CCTGGTCTCTGCATCTGGAC 59.822 60.000 0.00 0.00 0.00 4.02
239 240 0.979709 CCCTGGTCTCTGCATCTGGA 60.980 60.000 0.00 0.00 0.00 3.86
240 241 1.525923 CCCTGGTCTCTGCATCTGG 59.474 63.158 0.00 0.00 0.00 3.86
241 242 1.270414 ACCCCTGGTCTCTGCATCTG 61.270 60.000 0.00 0.00 0.00 2.90
242 243 1.081833 ACCCCTGGTCTCTGCATCT 59.918 57.895 0.00 0.00 0.00 2.90
243 244 3.732938 ACCCCTGGTCTCTGCATC 58.267 61.111 0.00 0.00 0.00 3.91
252 253 1.686236 AAAGGATGATGACCCCTGGT 58.314 50.000 0.00 0.00 39.44 4.00
253 254 2.243221 AGAAAAGGATGATGACCCCTGG 59.757 50.000 0.00 0.00 0.00 4.45
254 255 3.659183 AGAAAAGGATGATGACCCCTG 57.341 47.619 0.00 0.00 0.00 4.45
255 256 5.796502 TTTAGAAAAGGATGATGACCCCT 57.203 39.130 0.00 0.00 0.00 4.79
256 257 6.850752 TTTTTAGAAAAGGATGATGACCCC 57.149 37.500 0.00 0.00 0.00 4.95
304 306 8.443176 AGAATTTCTATGATTGCCAATCCTCTA 58.557 33.333 14.58 3.71 37.09 2.43
425 428 7.445121 TCCTTAGTGGCATCATAATGTTCTAG 58.555 38.462 0.00 0.00 35.18 2.43
437 440 3.640967 AGACTGAGATCCTTAGTGGCATC 59.359 47.826 0.00 0.00 30.44 3.91
464 467 8.915654 GTCTTTCCAAATTACTATGCACAAAAG 58.084 33.333 0.00 0.00 0.00 2.27
469 473 6.178239 ACGTCTTTCCAAATTACTATGCAC 57.822 37.500 0.00 0.00 0.00 4.57
484 488 2.417719 ACATCTGCTTGGACGTCTTTC 58.582 47.619 16.46 0.00 0.00 2.62
490 495 4.631377 TGAATTCTAACATCTGCTTGGACG 59.369 41.667 7.05 0.00 0.00 4.79
624 639 5.488341 TGTAGAGGTAAAAGACAGGAATGC 58.512 41.667 0.00 0.00 0.00 3.56
630 649 9.273016 TCAAAGAAATGTAGAGGTAAAAGACAG 57.727 33.333 0.00 0.00 0.00 3.51
632 651 9.880064 GTTCAAAGAAATGTAGAGGTAAAAGAC 57.120 33.333 0.00 0.00 0.00 3.01
639 658 7.559897 TCTTTTGGTTCAAAGAAATGTAGAGGT 59.440 33.333 0.00 0.00 34.72 3.85
713 735 1.269102 ACCGTTGTCGAGTCAGTTGAG 60.269 52.381 0.00 0.00 39.71 3.02
871 898 1.097547 GGTTCTCATGGCACGGATGG 61.098 60.000 0.00 0.00 0.00 3.51
1137 1169 4.862823 GCTACCTCCTCCCCGGCT 62.863 72.222 0.00 0.00 0.00 5.52
1152 1184 3.241530 TCCACCTTCTGCACCGCT 61.242 61.111 0.00 0.00 0.00 5.52
1576 1616 1.614227 ATCGCGCGCCGTATACAATG 61.614 55.000 27.95 7.29 38.35 2.82
1665 1710 5.757886 CAACCAACGAACATCATACAAACT 58.242 37.500 0.00 0.00 0.00 2.66
1713 1760 6.636454 TGTAAACTGAAATGGAGGGAGTAT 57.364 37.500 0.00 0.00 0.00 2.12
1724 1771 4.387862 CGCGTAGGACTTGTAAACTGAAAT 59.612 41.667 0.00 0.00 0.00 2.17
1743 1790 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01
1934 2024 0.038744 AATCCCATCATCGATGCCCC 59.961 55.000 20.81 0.00 38.59 5.80
1948 2038 0.103937 CTGAGAGGACTGCGAATCCC 59.896 60.000 0.00 0.00 36.86 3.85
1956 2046 3.381908 AGCCGTAATAACTGAGAGGACTG 59.618 47.826 0.00 0.00 0.00 3.51
2021 2689 1.351017 ACCACCTACCACAACATCTGG 59.649 52.381 0.00 0.00 34.62 3.86
2079 2967 1.202604 ACCAACCGTTGATCACTTCGT 60.203 47.619 13.04 0.00 0.00 3.85
2081 2969 4.693566 TCATTACCAACCGTTGATCACTTC 59.306 41.667 13.04 0.00 0.00 3.01
2093 2981 1.676006 CGCCCTTCATCATTACCAACC 59.324 52.381 0.00 0.00 0.00 3.77
2098 2986 4.201881 GGTAACAACGCCCTTCATCATTAC 60.202 45.833 0.00 0.00 0.00 1.89
2099 2987 3.942748 GGTAACAACGCCCTTCATCATTA 59.057 43.478 0.00 0.00 0.00 1.90
2100 2988 2.752903 GGTAACAACGCCCTTCATCATT 59.247 45.455 0.00 0.00 0.00 2.57
2101 2989 2.365582 GGTAACAACGCCCTTCATCAT 58.634 47.619 0.00 0.00 0.00 2.45
2102 2990 1.816074 GGTAACAACGCCCTTCATCA 58.184 50.000 0.00 0.00 0.00 3.07
2135 3023 9.774742 GCATATATGAAATTTAAACGAGGATCC 57.225 33.333 17.10 2.48 0.00 3.36
2138 3026 8.999431 GGAGCATATATGAAATTTAAACGAGGA 58.001 33.333 17.10 0.00 0.00 3.71
2139 3027 7.957484 CGGAGCATATATGAAATTTAAACGAGG 59.043 37.037 17.10 0.00 0.00 4.63
2140 3028 8.708742 TCGGAGCATATATGAAATTTAAACGAG 58.291 33.333 17.10 0.00 0.00 4.18
2141 3029 8.596271 TCGGAGCATATATGAAATTTAAACGA 57.404 30.769 17.10 8.86 0.00 3.85
2142 3030 7.957484 CCTCGGAGCATATATGAAATTTAAACG 59.043 37.037 17.10 6.94 0.00 3.60
2143 3031 8.237267 CCCTCGGAGCATATATGAAATTTAAAC 58.763 37.037 17.10 0.00 0.00 2.01
2144 3032 7.094377 GCCCTCGGAGCATATATGAAATTTAAA 60.094 37.037 17.10 0.00 0.00 1.52
2145 3033 6.374333 GCCCTCGGAGCATATATGAAATTTAA 59.626 38.462 17.10 0.00 0.00 1.52
2146 3034 5.880332 GCCCTCGGAGCATATATGAAATTTA 59.120 40.000 17.10 0.00 0.00 1.40
2147 3035 4.702131 GCCCTCGGAGCATATATGAAATTT 59.298 41.667 17.10 0.00 0.00 1.82
2148 3036 4.265073 GCCCTCGGAGCATATATGAAATT 58.735 43.478 17.10 0.00 0.00 1.82
2149 3037 3.679917 CGCCCTCGGAGCATATATGAAAT 60.680 47.826 17.10 1.15 0.00 2.17
2150 3038 2.353704 CGCCCTCGGAGCATATATGAAA 60.354 50.000 17.10 0.00 0.00 2.69
2151 3039 1.204704 CGCCCTCGGAGCATATATGAA 59.795 52.381 17.10 0.00 0.00 2.57
2152 3040 0.817654 CGCCCTCGGAGCATATATGA 59.182 55.000 17.10 0.00 0.00 2.15
2153 3041 0.532573 ACGCCCTCGGAGCATATATG 59.467 55.000 8.45 8.45 40.69 1.78
2154 3042 1.066858 CAACGCCCTCGGAGCATATAT 60.067 52.381 0.00 0.00 40.69 0.86
2155 3043 0.317160 CAACGCCCTCGGAGCATATA 59.683 55.000 0.00 0.00 40.69 0.86
2156 3044 1.069765 CAACGCCCTCGGAGCATAT 59.930 57.895 0.00 0.00 40.69 1.78
2157 3045 2.355986 ACAACGCCCTCGGAGCATA 61.356 57.895 0.00 0.00 40.69 3.14
2158 3046 3.706373 ACAACGCCCTCGGAGCAT 61.706 61.111 0.00 0.00 40.69 3.79
2159 3047 4.680237 CACAACGCCCTCGGAGCA 62.680 66.667 0.00 0.00 40.69 4.26
2160 3048 4.681978 ACACAACGCCCTCGGAGC 62.682 66.667 0.00 0.00 40.69 4.70
2161 3049 0.320073 TAAACACAACGCCCTCGGAG 60.320 55.000 0.00 0.00 40.69 4.63
2162 3050 0.106335 TTAAACACAACGCCCTCGGA 59.894 50.000 0.00 0.00 40.69 4.55
2163 3051 0.945813 TTTAAACACAACGCCCTCGG 59.054 50.000 0.00 0.00 40.69 4.63
2164 3052 1.658094 CGTTTAAACACAACGCCCTCG 60.658 52.381 18.07 0.00 40.49 4.63
2165 3053 1.598601 TCGTTTAAACACAACGCCCTC 59.401 47.619 18.07 0.00 45.36 4.30
2166 3054 1.600485 CTCGTTTAAACACAACGCCCT 59.400 47.619 18.07 0.00 45.36 5.19
2167 3055 1.334329 CCTCGTTTAAACACAACGCCC 60.334 52.381 18.07 0.00 45.36 6.13
2168 3056 1.598601 TCCTCGTTTAAACACAACGCC 59.401 47.619 18.07 0.00 45.36 5.68
2169 3057 2.899977 CTCCTCGTTTAAACACAACGC 58.100 47.619 18.07 0.00 45.36 4.84
2170 3058 2.285756 TGCTCCTCGTTTAAACACAACG 59.714 45.455 18.07 4.78 46.78 4.10
2171 3059 3.955771 TGCTCCTCGTTTAAACACAAC 57.044 42.857 18.07 3.20 0.00 3.32
2172 3060 9.602568 TTATATATGCTCCTCGTTTAAACACAA 57.397 29.630 18.07 2.49 0.00 3.33
2173 3061 9.037737 GTTATATATGCTCCTCGTTTAAACACA 57.962 33.333 18.07 6.43 0.00 3.72
2174 3062 9.037737 TGTTATATATGCTCCTCGTTTAAACAC 57.962 33.333 18.07 3.74 0.00 3.32
2175 3063 9.602568 TTGTTATATATGCTCCTCGTTTAAACA 57.397 29.630 18.07 4.98 0.00 2.83
2176 3064 9.859692 GTTGTTATATATGCTCCTCGTTTAAAC 57.140 33.333 8.35 8.35 0.00 2.01
2177 3065 8.757789 CGTTGTTATATATGCTCCTCGTTTAAA 58.242 33.333 0.00 0.00 0.00 1.52
2178 3066 7.095940 GCGTTGTTATATATGCTCCTCGTTTAA 60.096 37.037 0.00 0.00 0.00 1.52
2179 3067 6.364165 GCGTTGTTATATATGCTCCTCGTTTA 59.636 38.462 0.00 0.00 0.00 2.01
2180 3068 5.176958 GCGTTGTTATATATGCTCCTCGTTT 59.823 40.000 0.00 0.00 0.00 3.60
2181 3069 4.684703 GCGTTGTTATATATGCTCCTCGTT 59.315 41.667 0.00 0.00 0.00 3.85
2182 3070 4.235360 GCGTTGTTATATATGCTCCTCGT 58.765 43.478 0.00 0.00 0.00 4.18
2183 3071 3.612860 GGCGTTGTTATATATGCTCCTCG 59.387 47.826 0.00 0.00 0.00 4.63
2184 3072 3.933332 GGGCGTTGTTATATATGCTCCTC 59.067 47.826 0.00 0.00 0.00 3.71
2185 3073 3.583086 AGGGCGTTGTTATATATGCTCCT 59.417 43.478 0.00 0.00 0.00 3.69
2186 3074 3.939066 AGGGCGTTGTTATATATGCTCC 58.061 45.455 0.00 0.00 0.00 4.70
2187 3075 5.283060 CAAGGGCGTTGTTATATATGCTC 57.717 43.478 11.60 0.00 0.00 4.26
2199 3087 2.113289 CGTTTAAACACAAGGGCGTTG 58.887 47.619 17.65 17.65 42.48 4.10
2200 3088 2.015587 TCGTTTAAACACAAGGGCGTT 58.984 42.857 18.07 0.00 0.00 4.84
2201 3089 1.600485 CTCGTTTAAACACAAGGGCGT 59.400 47.619 18.07 0.00 0.00 5.68
2202 3090 1.069500 CCTCGTTTAAACACAAGGGCG 60.069 52.381 18.07 2.01 0.00 6.13
2203 3091 2.223745 TCCTCGTTTAAACACAAGGGC 58.776 47.619 21.94 0.00 0.00 5.19
2204 3092 2.225727 GCTCCTCGTTTAAACACAAGGG 59.774 50.000 21.94 16.37 0.00 3.95
2205 3093 2.875933 TGCTCCTCGTTTAAACACAAGG 59.124 45.455 18.07 18.41 0.00 3.61
2206 3094 4.749245 ATGCTCCTCGTTTAAACACAAG 57.251 40.909 18.07 11.20 0.00 3.16
2207 3095 7.766738 TCATATATGCTCCTCGTTTAAACACAA 59.233 33.333 18.07 2.49 0.00 3.33
2208 3096 7.223971 GTCATATATGCTCCTCGTTTAAACACA 59.776 37.037 18.07 6.43 0.00 3.72
2209 3097 7.223971 TGTCATATATGCTCCTCGTTTAAACAC 59.776 37.037 18.07 3.74 0.00 3.32
2210 3098 7.269316 TGTCATATATGCTCCTCGTTTAAACA 58.731 34.615 18.07 4.98 0.00 2.83
2211 3099 7.569591 GCTGTCATATATGCTCCTCGTTTAAAC 60.570 40.741 8.35 8.35 0.00 2.01
2212 3100 6.423905 GCTGTCATATATGCTCCTCGTTTAAA 59.576 38.462 7.92 0.00 0.00 1.52
2213 3101 5.926542 GCTGTCATATATGCTCCTCGTTTAA 59.073 40.000 7.92 0.00 0.00 1.52
2214 3102 5.010617 TGCTGTCATATATGCTCCTCGTTTA 59.989 40.000 7.92 0.00 0.00 2.01
2215 3103 4.202253 TGCTGTCATATATGCTCCTCGTTT 60.202 41.667 7.92 0.00 0.00 3.60
2216 3104 3.321968 TGCTGTCATATATGCTCCTCGTT 59.678 43.478 7.92 0.00 0.00 3.85
2217 3105 2.893489 TGCTGTCATATATGCTCCTCGT 59.107 45.455 7.92 0.00 0.00 4.18
2218 3106 3.582714 TGCTGTCATATATGCTCCTCG 57.417 47.619 7.92 0.00 0.00 4.63
2219 3107 6.814506 AATTTGCTGTCATATATGCTCCTC 57.185 37.500 7.92 0.00 0.00 3.71
2220 3108 8.696043 TTAAATTTGCTGTCATATATGCTCCT 57.304 30.769 7.92 0.00 0.00 3.69
2221 3109 9.185192 GTTTAAATTTGCTGTCATATATGCTCC 57.815 33.333 7.92 0.00 0.00 4.70
2222 3110 8.895845 CGTTTAAATTTGCTGTCATATATGCTC 58.104 33.333 7.92 4.60 0.00 4.26
2223 3111 7.862372 CCGTTTAAATTTGCTGTCATATATGCT 59.138 33.333 7.92 0.00 0.00 3.79
2224 3112 7.114811 CCCGTTTAAATTTGCTGTCATATATGC 59.885 37.037 7.92 4.27 0.00 3.14
2225 3113 7.114811 GCCCGTTTAAATTTGCTGTCATATATG 59.885 37.037 6.36 6.36 0.00 1.78
2226 3114 7.145323 GCCCGTTTAAATTTGCTGTCATATAT 58.855 34.615 0.00 0.00 0.00 0.86
2227 3115 6.095580 TGCCCGTTTAAATTTGCTGTCATATA 59.904 34.615 0.00 0.00 0.00 0.86
2228 3116 5.105554 TGCCCGTTTAAATTTGCTGTCATAT 60.106 36.000 0.00 0.00 0.00 1.78
2229 3117 4.218635 TGCCCGTTTAAATTTGCTGTCATA 59.781 37.500 0.00 0.00 0.00 2.15
2230 3118 3.006323 TGCCCGTTTAAATTTGCTGTCAT 59.994 39.130 0.00 0.00 0.00 3.06
2231 3119 2.362397 TGCCCGTTTAAATTTGCTGTCA 59.638 40.909 0.00 0.00 0.00 3.58
2232 3120 3.019933 TGCCCGTTTAAATTTGCTGTC 57.980 42.857 0.00 0.00 0.00 3.51
2233 3121 3.181470 ACTTGCCCGTTTAAATTTGCTGT 60.181 39.130 0.00 0.00 0.00 4.40
2234 3122 3.389221 ACTTGCCCGTTTAAATTTGCTG 58.611 40.909 0.00 0.00 0.00 4.41
2235 3123 3.744238 ACTTGCCCGTTTAAATTTGCT 57.256 38.095 0.00 0.00 0.00 3.91
2236 3124 4.804608 AAACTTGCCCGTTTAAATTTGC 57.195 36.364 0.00 0.00 35.48 3.68
2242 3130 4.261114 CCTCGTTTAAACTTGCCCGTTTAA 60.261 41.667 16.01 13.30 43.64 1.52
2243 3131 3.250521 CCTCGTTTAAACTTGCCCGTTTA 59.749 43.478 16.01 4.19 38.08 2.01
2244 3132 2.033675 CCTCGTTTAAACTTGCCCGTTT 59.966 45.455 16.01 5.87 40.06 3.60
2245 3133 1.605232 CCTCGTTTAAACTTGCCCGTT 59.395 47.619 16.01 0.00 0.00 4.44
2246 3134 1.202675 TCCTCGTTTAAACTTGCCCGT 60.203 47.619 16.01 0.00 0.00 5.28
2247 3135 1.515081 TCCTCGTTTAAACTTGCCCG 58.485 50.000 16.01 2.28 0.00 6.13
2248 3136 2.095372 CGATCCTCGTTTAAACTTGCCC 59.905 50.000 16.01 1.17 34.72 5.36
2249 3137 2.095372 CCGATCCTCGTTTAAACTTGCC 59.905 50.000 16.01 0.69 38.40 4.52
2250 3138 2.997986 TCCGATCCTCGTTTAAACTTGC 59.002 45.455 16.01 0.00 38.40 4.01
2251 3139 4.243270 ACTCCGATCCTCGTTTAAACTTG 58.757 43.478 16.01 8.30 38.40 3.16
2252 3140 4.532314 ACTCCGATCCTCGTTTAAACTT 57.468 40.909 16.01 0.00 38.40 2.66
2253 3141 5.649782 TTACTCCGATCCTCGTTTAAACT 57.350 39.130 16.01 0.00 38.40 2.66
2254 3142 7.992180 TTATTACTCCGATCCTCGTTTAAAC 57.008 36.000 8.35 8.35 38.40 2.01
2255 3143 8.199449 ACATTATTACTCCGATCCTCGTTTAAA 58.801 33.333 0.00 0.00 38.40 1.52
2256 3144 7.719483 ACATTATTACTCCGATCCTCGTTTAA 58.281 34.615 0.00 0.00 38.40 1.52
2257 3145 7.281040 ACATTATTACTCCGATCCTCGTTTA 57.719 36.000 0.00 0.00 38.40 2.01
2258 3146 6.158023 ACATTATTACTCCGATCCTCGTTT 57.842 37.500 0.00 0.00 38.40 3.60
2259 3147 5.786264 ACATTATTACTCCGATCCTCGTT 57.214 39.130 0.00 0.00 38.40 3.85
2260 3148 6.569994 GCTTACATTATTACTCCGATCCTCGT 60.570 42.308 0.00 0.00 38.40 4.18
2261 3149 5.800941 GCTTACATTATTACTCCGATCCTCG 59.199 44.000 0.00 0.00 40.07 4.63
2262 3150 6.688578 TGCTTACATTATTACTCCGATCCTC 58.311 40.000 0.00 0.00 0.00 3.71
2263 3151 6.665992 TGCTTACATTATTACTCCGATCCT 57.334 37.500 0.00 0.00 0.00 3.24
2264 3152 6.929606 ACTTGCTTACATTATTACTCCGATCC 59.070 38.462 0.00 0.00 0.00 3.36
2265 3153 7.948278 ACTTGCTTACATTATTACTCCGATC 57.052 36.000 0.00 0.00 0.00 3.69
2266 3154 8.732746 AAACTTGCTTACATTATTACTCCGAT 57.267 30.769 0.00 0.00 0.00 4.18
2267 3155 9.656040 TTAAACTTGCTTACATTATTACTCCGA 57.344 29.630 0.00 0.00 0.00 4.55
2284 3172 3.831715 ATGCTCCTCGTTTAAACTTGC 57.168 42.857 16.01 12.08 0.00 4.01
2287 3175 8.958119 TTTCATATATGCTCCTCGTTTAAACT 57.042 30.769 16.01 0.00 0.00 2.66
2358 3246 7.094975 GCGGTTGCATACTAATGATTGGTATTA 60.095 37.037 10.93 2.31 42.15 0.98
2359 3247 6.293955 GCGGTTGCATACTAATGATTGGTATT 60.294 38.462 10.93 0.00 42.15 1.89
2360 3248 5.181245 GCGGTTGCATACTAATGATTGGTAT 59.819 40.000 8.19 8.19 42.15 2.73
2361 3249 4.513692 GCGGTTGCATACTAATGATTGGTA 59.486 41.667 3.84 3.84 42.15 3.25
2362 3250 3.315191 GCGGTTGCATACTAATGATTGGT 59.685 43.478 0.00 0.00 42.15 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.