Multiple sequence alignment - TraesCS1B01G101800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G101800 chr1B 100.000 3282 0 0 1 3282 111668534 111671815 0.000000e+00 6061.0
1 TraesCS1B01G101800 chr1B 98.291 117 2 0 487 603 674876130 674876246 4.290000e-49 206.0
2 TraesCS1B01G101800 chr1D 94.281 2378 93 17 735 3091 70345774 70348129 0.000000e+00 3598.0
3 TraesCS1B01G101800 chr1D 95.541 314 10 1 1 310 70345456 70345769 1.760000e-137 499.0
4 TraesCS1B01G101800 chr1D 94.220 173 10 0 3082 3254 36612125 36612297 6.980000e-67 265.0
5 TraesCS1B01G101800 chr1A 93.050 2446 94 29 691 3091 70701768 70704182 0.000000e+00 3506.0
6 TraesCS1B01G101800 chr1A 92.547 322 14 2 1 312 70701349 70701670 1.390000e-123 453.0
7 TraesCS1B01G101800 chr1A 80.702 171 25 7 326 488 368747747 368747917 3.440000e-25 126.0
8 TraesCS1B01G101800 chr7D 95.322 171 7 1 3085 3254 513817908 513817738 1.500000e-68 270.0
9 TraesCS1B01G101800 chr7D 82.500 80 11 3 325 402 102964078 102964000 2.110000e-07 67.6
10 TraesCS1B01G101800 chr5A 94.798 173 9 0 3083 3255 382566809 382566637 1.500000e-68 270.0
11 TraesCS1B01G101800 chr6A 93.370 181 12 0 3085 3265 24071891 24072071 5.400000e-68 268.0
12 TraesCS1B01G101800 chr6A 77.640 161 29 4 326 479 545844369 545844529 1.250000e-14 91.6
13 TraesCS1B01G101800 chr3A 95.294 170 7 1 3086 3255 744921114 744920946 5.400000e-68 268.0
14 TraesCS1B01G101800 chr3A 79.412 170 24 7 324 483 696236678 696236846 3.460000e-20 110.0
15 TraesCS1B01G101800 chr3A 78.035 173 26 9 326 488 269591524 269591354 7.490000e-17 99.0
16 TraesCS1B01G101800 chr7A 93.785 177 9 2 3084 3260 324925200 324925026 6.980000e-67 265.0
17 TraesCS1B01G101800 chr6D 94.220 173 8 2 3084 3255 32865339 32865168 2.510000e-66 263.0
18 TraesCS1B01G101800 chr5D 92.818 181 13 0 3089 3269 321902079 321901899 2.510000e-66 263.0
19 TraesCS1B01G101800 chr5D 95.238 126 4 2 486 609 462793971 462793846 7.180000e-47 198.0
20 TraesCS1B01G101800 chr2D 92.737 179 13 0 3087 3265 580013764 580013942 3.250000e-65 259.0
21 TraesCS1B01G101800 chr6B 96.032 126 5 0 487 612 642731135 642731010 4.290000e-49 206.0
22 TraesCS1B01G101800 chr3B 96.032 126 5 0 487 612 31105778 31105653 4.290000e-49 206.0
23 TraesCS1B01G101800 chr3B 78.443 167 24 9 324 479 801009657 801009822 7.490000e-17 99.0
24 TraesCS1B01G101800 chr5B 97.479 119 3 0 486 604 446529628 446529746 1.540000e-48 204.0
25 TraesCS1B01G101800 chr7B 97.458 118 3 0 487 604 126755149 126755266 5.550000e-48 202.0
26 TraesCS1B01G101800 chr4B 95.968 124 5 0 487 610 97557137 97557014 5.550000e-48 202.0
27 TraesCS1B01G101800 chr4B 96.639 119 4 0 487 605 660685812 660685930 7.180000e-47 198.0
28 TraesCS1B01G101800 chr4B 90.000 60 6 0 326 385 258240586 258240645 9.760000e-11 78.7
29 TraesCS1B01G101800 chr2B 95.200 125 6 0 487 611 620927840 620927716 7.180000e-47 198.0
30 TraesCS1B01G101800 chr2B 83.333 132 14 5 326 449 95802859 95802728 7.440000e-22 115.0
31 TraesCS1B01G101800 chr2A 88.333 60 7 0 326 385 418227873 418227932 4.540000e-09 73.1
32 TraesCS1B01G101800 chr4A 100.000 28 0 0 602 629 174691118 174691145 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G101800 chr1B 111668534 111671815 3281 False 6061.0 6061 100.0000 1 3282 1 chr1B.!!$F1 3281
1 TraesCS1B01G101800 chr1D 70345456 70348129 2673 False 2048.5 3598 94.9110 1 3091 2 chr1D.!!$F2 3090
2 TraesCS1B01G101800 chr1A 70701349 70704182 2833 False 1979.5 3506 92.7985 1 3091 2 chr1A.!!$F2 3090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 614 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
604 619 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.0 13.64 0.00 46.06 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 2263 0.250338 AGTTGTCGAAGAAGGTGGCC 60.250 55.0 0.0 0.0 39.69 5.36 R
2286 2367 0.981277 CTAAGGGAAAGGGGAGCGGA 60.981 60.0 0.0 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 1.099879 GGCTGCTTCTGATGCCGATT 61.100 55.000 12.33 0.00 35.79 3.34
81 82 3.748048 GCTGCTTCTGATGCCGATTATTA 59.252 43.478 12.33 0.00 0.00 0.98
84 85 3.126000 GCTTCTGATGCCGATTATTAGCC 59.874 47.826 4.30 0.00 0.00 3.93
100 101 2.569354 GCCCCCGTTTCACATTGCA 61.569 57.895 0.00 0.00 0.00 4.08
315 330 3.642848 AGTAAAGTACCAGAAACACCGGA 59.357 43.478 9.46 0.00 0.00 5.14
316 331 3.564053 AAAGTACCAGAAACACCGGAA 57.436 42.857 9.46 0.00 0.00 4.30
319 334 2.904434 AGTACCAGAAACACCGGAATCT 59.096 45.455 9.46 2.51 0.00 2.40
321 336 1.420138 ACCAGAAACACCGGAATCTGT 59.580 47.619 9.46 0.00 38.06 3.41
324 339 3.556213 CCAGAAACACCGGAATCTGTGTA 60.556 47.826 9.46 0.00 44.53 2.90
325 340 4.062293 CAGAAACACCGGAATCTGTGTAA 58.938 43.478 9.46 0.00 44.53 2.41
326 341 4.152402 CAGAAACACCGGAATCTGTGTAAG 59.848 45.833 9.46 0.00 44.53 2.34
327 342 2.762535 ACACCGGAATCTGTGTAAGG 57.237 50.000 9.46 0.00 43.54 2.69
328 343 1.278127 ACACCGGAATCTGTGTAAGGG 59.722 52.381 9.46 0.00 43.54 3.95
329 344 1.278127 CACCGGAATCTGTGTAAGGGT 59.722 52.381 9.46 0.00 0.00 4.34
330 345 1.553704 ACCGGAATCTGTGTAAGGGTC 59.446 52.381 9.46 0.00 0.00 4.46
331 346 1.553248 CCGGAATCTGTGTAAGGGTCA 59.447 52.381 0.00 0.00 0.00 4.02
332 347 2.418746 CCGGAATCTGTGTAAGGGTCAG 60.419 54.545 0.00 0.00 0.00 3.51
333 348 2.233922 CGGAATCTGTGTAAGGGTCAGT 59.766 50.000 0.00 0.00 0.00 3.41
334 349 3.306780 CGGAATCTGTGTAAGGGTCAGTT 60.307 47.826 0.00 0.00 0.00 3.16
335 350 4.254492 GGAATCTGTGTAAGGGTCAGTTC 58.746 47.826 0.00 0.00 0.00 3.01
336 351 4.020128 GGAATCTGTGTAAGGGTCAGTTCT 60.020 45.833 0.00 0.00 0.00 3.01
337 352 5.513267 GGAATCTGTGTAAGGGTCAGTTCTT 60.513 44.000 0.00 0.00 0.00 2.52
338 353 5.568620 ATCTGTGTAAGGGTCAGTTCTTT 57.431 39.130 0.00 0.00 0.00 2.52
339 354 5.367945 TCTGTGTAAGGGTCAGTTCTTTT 57.632 39.130 0.00 0.00 0.00 2.27
340 355 5.123227 TCTGTGTAAGGGTCAGTTCTTTTG 58.877 41.667 0.00 0.00 0.00 2.44
341 356 4.204012 TGTGTAAGGGTCAGTTCTTTTGG 58.796 43.478 0.00 0.00 0.00 3.28
342 357 3.004419 GTGTAAGGGTCAGTTCTTTTGGC 59.996 47.826 0.00 0.00 0.00 4.52
343 358 2.452600 AAGGGTCAGTTCTTTTGGCA 57.547 45.000 0.00 0.00 0.00 4.92
344 359 1.986882 AGGGTCAGTTCTTTTGGCAG 58.013 50.000 0.00 0.00 0.00 4.85
345 360 0.315251 GGGTCAGTTCTTTTGGCAGC 59.685 55.000 0.00 0.00 0.00 5.25
346 361 1.322442 GGTCAGTTCTTTTGGCAGCT 58.678 50.000 0.00 0.00 0.00 4.24
347 362 1.683385 GGTCAGTTCTTTTGGCAGCTT 59.317 47.619 0.00 0.00 0.00 3.74
348 363 2.884639 GGTCAGTTCTTTTGGCAGCTTA 59.115 45.455 0.00 0.00 0.00 3.09
349 364 3.317993 GGTCAGTTCTTTTGGCAGCTTAA 59.682 43.478 0.00 0.00 0.00 1.85
350 365 4.202111 GGTCAGTTCTTTTGGCAGCTTAAA 60.202 41.667 0.00 0.00 0.00 1.52
351 366 5.348164 GTCAGTTCTTTTGGCAGCTTAAAA 58.652 37.500 0.00 0.33 0.00 1.52
352 367 5.810074 GTCAGTTCTTTTGGCAGCTTAAAAA 59.190 36.000 8.69 5.67 0.00 1.94
353 368 6.479990 GTCAGTTCTTTTGGCAGCTTAAAAAT 59.520 34.615 8.69 0.00 0.00 1.82
354 369 7.651704 GTCAGTTCTTTTGGCAGCTTAAAAATA 59.348 33.333 8.69 0.00 0.00 1.40
355 370 8.200792 TCAGTTCTTTTGGCAGCTTAAAAATAA 58.799 29.630 8.69 3.74 0.00 1.40
356 371 8.490355 CAGTTCTTTTGGCAGCTTAAAAATAAG 58.510 33.333 8.69 0.00 0.00 1.73
364 379 3.079960 GCTTAAAAATAAGCCGCCTCC 57.920 47.619 8.96 0.00 44.85 4.30
365 380 2.688446 GCTTAAAAATAAGCCGCCTCCT 59.312 45.455 8.96 0.00 44.85 3.69
366 381 3.243101 GCTTAAAAATAAGCCGCCTCCTC 60.243 47.826 8.96 0.00 44.85 3.71
367 382 2.808906 AAAAATAAGCCGCCTCCTCT 57.191 45.000 0.00 0.00 0.00 3.69
368 383 2.808906 AAAATAAGCCGCCTCCTCTT 57.191 45.000 0.00 0.00 0.00 2.85
369 384 2.333688 AAATAAGCCGCCTCCTCTTC 57.666 50.000 0.00 0.00 0.00 2.87
370 385 1.204146 AATAAGCCGCCTCCTCTTCA 58.796 50.000 0.00 0.00 0.00 3.02
371 386 0.755686 ATAAGCCGCCTCCTCTTCAG 59.244 55.000 0.00 0.00 0.00 3.02
372 387 1.961180 TAAGCCGCCTCCTCTTCAGC 61.961 60.000 0.00 0.00 0.00 4.26
373 388 3.780173 GCCGCCTCCTCTTCAGCT 61.780 66.667 0.00 0.00 0.00 4.24
374 389 2.985456 CCGCCTCCTCTTCAGCTT 59.015 61.111 0.00 0.00 0.00 3.74
375 390 1.298014 CCGCCTCCTCTTCAGCTTT 59.702 57.895 0.00 0.00 0.00 3.51
376 391 0.322008 CCGCCTCCTCTTCAGCTTTT 60.322 55.000 0.00 0.00 0.00 2.27
377 392 1.082690 CGCCTCCTCTTCAGCTTTTC 58.917 55.000 0.00 0.00 0.00 2.29
378 393 1.338579 CGCCTCCTCTTCAGCTTTTCT 60.339 52.381 0.00 0.00 0.00 2.52
379 394 2.355197 GCCTCCTCTTCAGCTTTTCTC 58.645 52.381 0.00 0.00 0.00 2.87
380 395 2.289945 GCCTCCTCTTCAGCTTTTCTCA 60.290 50.000 0.00 0.00 0.00 3.27
381 396 3.621958 GCCTCCTCTTCAGCTTTTCTCAT 60.622 47.826 0.00 0.00 0.00 2.90
382 397 4.383552 GCCTCCTCTTCAGCTTTTCTCATA 60.384 45.833 0.00 0.00 0.00 2.15
383 398 5.738909 CCTCCTCTTCAGCTTTTCTCATAA 58.261 41.667 0.00 0.00 0.00 1.90
384 399 5.816777 CCTCCTCTTCAGCTTTTCTCATAAG 59.183 44.000 0.00 0.00 0.00 1.73
385 400 6.365970 TCCTCTTCAGCTTTTCTCATAAGT 57.634 37.500 0.00 0.00 0.00 2.24
386 401 6.773638 TCCTCTTCAGCTTTTCTCATAAGTT 58.226 36.000 0.00 0.00 0.00 2.66
387 402 6.652481 TCCTCTTCAGCTTTTCTCATAAGTTG 59.348 38.462 0.00 0.00 35.81 3.16
388 403 6.246420 TCTTCAGCTTTTCTCATAAGTTGC 57.754 37.500 0.00 0.00 34.87 4.17
389 404 5.182001 TCTTCAGCTTTTCTCATAAGTTGCC 59.818 40.000 0.00 0.00 34.87 4.52
390 405 4.655963 TCAGCTTTTCTCATAAGTTGCCT 58.344 39.130 0.00 0.00 34.87 4.75
391 406 4.697352 TCAGCTTTTCTCATAAGTTGCCTC 59.303 41.667 0.00 0.00 34.87 4.70
392 407 4.699257 CAGCTTTTCTCATAAGTTGCCTCT 59.301 41.667 0.00 0.00 29.28 3.69
393 408 4.940654 AGCTTTTCTCATAAGTTGCCTCTC 59.059 41.667 0.00 0.00 0.00 3.20
394 409 4.940654 GCTTTTCTCATAAGTTGCCTCTCT 59.059 41.667 0.00 0.00 0.00 3.10
395 410 5.414144 GCTTTTCTCATAAGTTGCCTCTCTT 59.586 40.000 0.00 0.00 0.00 2.85
396 411 6.595716 GCTTTTCTCATAAGTTGCCTCTCTTA 59.404 38.462 0.00 0.00 0.00 2.10
397 412 7.281999 GCTTTTCTCATAAGTTGCCTCTCTTAT 59.718 37.037 0.00 0.00 37.35 1.73
398 413 9.171877 CTTTTCTCATAAGTTGCCTCTCTTATT 57.828 33.333 0.00 0.00 35.51 1.40
399 414 8.723942 TTTCTCATAAGTTGCCTCTCTTATTC 57.276 34.615 0.00 0.00 35.51 1.75
400 415 7.423844 TCTCATAAGTTGCCTCTCTTATTCA 57.576 36.000 0.00 0.00 35.51 2.57
401 416 8.027524 TCTCATAAGTTGCCTCTCTTATTCAT 57.972 34.615 0.00 0.00 35.51 2.57
402 417 8.489489 TCTCATAAGTTGCCTCTCTTATTCATT 58.511 33.333 0.00 0.00 35.51 2.57
403 418 8.442632 TCATAAGTTGCCTCTCTTATTCATTG 57.557 34.615 0.00 0.00 35.51 2.82
404 419 7.500227 TCATAAGTTGCCTCTCTTATTCATTGG 59.500 37.037 0.00 0.00 35.51 3.16
405 420 4.530875 AGTTGCCTCTCTTATTCATTGGG 58.469 43.478 0.00 0.00 0.00 4.12
406 421 4.018050 AGTTGCCTCTCTTATTCATTGGGT 60.018 41.667 0.00 0.00 0.00 4.51
407 422 4.591321 TGCCTCTCTTATTCATTGGGTT 57.409 40.909 0.00 0.00 0.00 4.11
408 423 4.934356 TGCCTCTCTTATTCATTGGGTTT 58.066 39.130 0.00 0.00 0.00 3.27
409 424 4.949856 TGCCTCTCTTATTCATTGGGTTTC 59.050 41.667 0.00 0.00 0.00 2.78
410 425 4.339530 GCCTCTCTTATTCATTGGGTTTCC 59.660 45.833 0.00 0.00 0.00 3.13
411 426 5.509498 CCTCTCTTATTCATTGGGTTTCCA 58.491 41.667 0.00 0.00 42.25 3.53
412 427 6.131961 CCTCTCTTATTCATTGGGTTTCCAT 58.868 40.000 0.00 0.00 43.63 3.41
413 428 6.264067 CCTCTCTTATTCATTGGGTTTCCATC 59.736 42.308 0.00 0.00 43.63 3.51
414 429 6.730447 TCTCTTATTCATTGGGTTTCCATCA 58.270 36.000 0.00 0.00 43.63 3.07
415 430 7.356680 TCTCTTATTCATTGGGTTTCCATCAT 58.643 34.615 0.00 0.00 43.63 2.45
416 431 7.286087 TCTCTTATTCATTGGGTTTCCATCATG 59.714 37.037 0.00 0.00 43.63 3.07
417 432 6.324512 TCTTATTCATTGGGTTTCCATCATGG 59.675 38.462 0.00 0.00 43.63 3.66
418 433 3.471430 TCATTGGGTTTCCATCATGGT 57.529 42.857 2.79 0.00 43.63 3.55
419 434 4.599720 TCATTGGGTTTCCATCATGGTA 57.400 40.909 2.79 0.00 43.63 3.25
420 435 5.141455 TCATTGGGTTTCCATCATGGTAT 57.859 39.130 2.79 0.00 43.63 2.73
421 436 6.272953 TCATTGGGTTTCCATCATGGTATA 57.727 37.500 2.79 0.00 43.63 1.47
422 437 6.862225 TCATTGGGTTTCCATCATGGTATAT 58.138 36.000 2.79 0.00 43.63 0.86
423 438 6.947733 TCATTGGGTTTCCATCATGGTATATC 59.052 38.462 2.79 0.00 43.63 1.63
424 439 6.529084 TTGGGTTTCCATCATGGTATATCT 57.471 37.500 2.79 0.00 43.63 1.98
425 440 7.640577 TTGGGTTTCCATCATGGTATATCTA 57.359 36.000 2.79 0.00 43.63 1.98
426 441 7.640577 TGGGTTTCCATCATGGTATATCTAA 57.359 36.000 2.79 0.00 39.03 2.10
427 442 8.230848 TGGGTTTCCATCATGGTATATCTAAT 57.769 34.615 2.79 0.00 39.03 1.73
428 443 8.677871 TGGGTTTCCATCATGGTATATCTAATT 58.322 33.333 2.79 0.00 39.03 1.40
429 444 9.533831 GGGTTTCCATCATGGTATATCTAATTT 57.466 33.333 2.79 0.00 39.03 1.82
484 499 4.929819 TTTTAAACTGGGGAGAAGCAAC 57.070 40.909 0.00 0.00 0.00 4.17
485 500 3.876309 TTAAACTGGGGAGAAGCAACT 57.124 42.857 0.00 0.00 0.00 3.16
486 501 2.755952 AAACTGGGGAGAAGCAACTT 57.244 45.000 0.00 0.00 0.00 2.66
487 502 3.876309 AAACTGGGGAGAAGCAACTTA 57.124 42.857 0.00 0.00 0.00 2.24
488 503 2.861147 ACTGGGGAGAAGCAACTTAC 57.139 50.000 0.00 0.00 0.00 2.34
489 504 2.339769 ACTGGGGAGAAGCAACTTACT 58.660 47.619 0.00 0.00 0.00 2.24
490 505 2.303311 ACTGGGGAGAAGCAACTTACTC 59.697 50.000 0.00 0.00 0.00 2.59
491 506 1.628846 TGGGGAGAAGCAACTTACTCC 59.371 52.381 0.00 0.00 45.50 3.85
494 509 3.254470 GGAGAAGCAACTTACTCCCTC 57.746 52.381 0.00 0.00 41.89 4.30
495 510 2.093394 GGAGAAGCAACTTACTCCCTCC 60.093 54.545 0.00 0.00 41.89 4.30
496 511 1.550976 AGAAGCAACTTACTCCCTCCG 59.449 52.381 0.00 0.00 0.00 4.63
497 512 1.275573 GAAGCAACTTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
498 513 2.226962 AGCAACTTACTCCCTCCGTA 57.773 50.000 0.00 0.00 0.00 4.02
499 514 1.823610 AGCAACTTACTCCCTCCGTAC 59.176 52.381 0.00 0.00 0.00 3.67
500 515 1.468736 GCAACTTACTCCCTCCGTACG 60.469 57.143 8.69 8.69 0.00 3.67
501 516 1.133790 CAACTTACTCCCTCCGTACGG 59.866 57.143 28.66 28.66 0.00 4.02
502 517 0.620556 ACTTACTCCCTCCGTACGGA 59.379 55.000 33.55 33.55 42.90 4.69
503 518 1.004745 ACTTACTCCCTCCGTACGGAA 59.995 52.381 34.77 21.09 44.66 4.30
504 519 2.305009 CTTACTCCCTCCGTACGGAAT 58.695 52.381 34.77 20.47 44.66 3.01
505 520 2.442236 TACTCCCTCCGTACGGAATT 57.558 50.000 34.77 18.48 44.66 2.17
506 521 2.442236 ACTCCCTCCGTACGGAATTA 57.558 50.000 34.77 21.70 44.66 1.40
507 522 2.027385 ACTCCCTCCGTACGGAATTAC 58.973 52.381 34.77 0.00 44.66 1.89
508 523 2.305009 CTCCCTCCGTACGGAATTACT 58.695 52.381 34.77 0.00 44.66 2.24
509 524 2.692041 CTCCCTCCGTACGGAATTACTT 59.308 50.000 34.77 0.00 44.66 2.24
510 525 2.428171 TCCCTCCGTACGGAATTACTTG 59.572 50.000 34.77 21.77 44.66 3.16
511 526 2.167075 CCCTCCGTACGGAATTACTTGT 59.833 50.000 34.77 0.00 44.66 3.16
512 527 3.442100 CCTCCGTACGGAATTACTTGTC 58.558 50.000 34.77 0.00 44.66 3.18
513 528 3.119388 CCTCCGTACGGAATTACTTGTCA 60.119 47.826 34.77 10.83 44.66 3.58
514 529 4.441079 CCTCCGTACGGAATTACTTGTCAT 60.441 45.833 34.77 0.00 44.66 3.06
515 530 5.075858 TCCGTACGGAATTACTTGTCATT 57.924 39.130 33.96 0.00 42.05 2.57
516 531 6.206395 TCCGTACGGAATTACTTGTCATTA 57.794 37.500 33.96 5.78 42.05 1.90
517 532 6.629128 TCCGTACGGAATTACTTGTCATTAA 58.371 36.000 33.96 5.36 42.05 1.40
518 533 7.095910 TCCGTACGGAATTACTTGTCATTAAA 58.904 34.615 33.96 4.98 42.05 1.52
519 534 7.601886 TCCGTACGGAATTACTTGTCATTAAAA 59.398 33.333 33.96 4.62 42.05 1.52
520 535 8.392612 CCGTACGGAATTACTTGTCATTAAAAT 58.607 33.333 30.64 0.00 37.50 1.82
521 536 9.205916 CGTACGGAATTACTTGTCATTAAAATG 57.794 33.333 7.57 0.00 37.75 2.32
522 537 9.498307 GTACGGAATTACTTGTCATTAAAATGG 57.502 33.333 3.00 0.00 37.03 3.16
523 538 8.343168 ACGGAATTACTTGTCATTAAAATGGA 57.657 30.769 3.00 0.00 37.03 3.41
524 539 8.966868 ACGGAATTACTTGTCATTAAAATGGAT 58.033 29.630 3.00 0.00 37.03 3.41
525 540 9.236691 CGGAATTACTTGTCATTAAAATGGATG 57.763 33.333 3.00 0.00 37.03 3.51
578 593 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
579 594 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
581 596 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
582 597 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
584 599 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
588 603 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
589 604 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
590 605 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
591 606 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
592 607 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
593 608 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
594 609 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
595 610 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
596 611 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
597 612 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
598 613 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
599 614 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
600 615 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
601 616 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
602 617 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
603 618 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
604 619 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.00 46.06 1.89
605 620 0.032813 TCCGGACGGAGGGAGTATTT 60.033 55.000 9.76 0.00 39.76 1.40
606 621 0.828677 CCGGACGGAGGGAGTATTTT 59.171 55.000 4.40 0.00 37.50 1.82
607 622 1.208776 CCGGACGGAGGGAGTATTTTT 59.791 52.381 4.40 0.00 37.50 1.94
626 641 4.911514 TTTTAAGCCGCTCAAAAGAACT 57.088 36.364 0.00 0.00 0.00 3.01
627 642 6.380095 TTTTTAAGCCGCTCAAAAGAACTA 57.620 33.333 1.74 0.00 0.00 2.24
628 643 5.607119 TTTAAGCCGCTCAAAAGAACTAG 57.393 39.130 0.00 0.00 0.00 2.57
629 644 1.443802 AGCCGCTCAAAAGAACTAGC 58.556 50.000 0.00 0.00 0.00 3.42
630 645 0.448197 GCCGCTCAAAAGAACTAGCC 59.552 55.000 0.00 0.00 0.00 3.93
631 646 1.087501 CCGCTCAAAAGAACTAGCCC 58.912 55.000 0.00 0.00 0.00 5.19
632 647 1.339151 CCGCTCAAAAGAACTAGCCCT 60.339 52.381 0.00 0.00 0.00 5.19
642 657 5.841957 AAGAACTAGCCCTAAAATGCATG 57.158 39.130 0.00 0.00 0.00 4.06
669 684 9.610705 GCATATCCATAGATAGATGATGTGTTT 57.389 33.333 0.00 0.00 38.37 2.83
676 691 5.999044 AGATAGATGATGTGTTTGGAAGCT 58.001 37.500 0.00 0.00 0.00 3.74
678 693 3.087031 AGATGATGTGTTTGGAAGCTGG 58.913 45.455 0.00 0.00 0.00 4.85
679 694 0.961019 TGATGTGTTTGGAAGCTGGC 59.039 50.000 0.00 0.00 0.00 4.85
681 696 0.178953 ATGTGTTTGGAAGCTGGCCT 60.179 50.000 3.32 0.00 0.00 5.19
687 702 1.583556 TTGGAAGCTGGCCTGATAGA 58.416 50.000 14.77 0.00 0.00 1.98
696 739 3.871485 CTGGCCTGATAGATGATTAGCC 58.129 50.000 3.32 0.00 0.00 3.93
698 741 3.262660 TGGCCTGATAGATGATTAGCCTG 59.737 47.826 3.32 0.00 0.00 4.85
713 756 1.761244 GCCTGTTGCACGTTTTTGCC 61.761 55.000 0.00 0.00 42.25 4.52
723 766 3.540551 GCACGTTTTTGCCGTTTAACTTG 60.541 43.478 0.00 0.00 36.17 3.16
767 810 7.615365 TGAGATGCTTTAACCATGGTAATTTCT 59.385 33.333 20.12 13.60 0.00 2.52
779 822 8.311109 ACCATGGTAATTTCTTCATAACAAACC 58.689 33.333 18.10 0.00 0.00 3.27
781 824 7.513371 TGGTAATTTCTTCATAACAAACCGT 57.487 32.000 0.00 0.00 0.00 4.83
810 857 8.665643 TGTTAAAAGCTTGCTGTAGTAGTAAA 57.334 30.769 0.00 0.00 30.32 2.01
1012 1082 6.238759 GCAGTAAAAAGAAATGTCTGGAGTGT 60.239 38.462 0.00 0.00 33.05 3.55
1033 1103 7.280356 AGTGTTTGATAGTAACAGTTCCTTGT 58.720 34.615 0.00 0.00 36.09 3.16
1038 1108 1.602377 AGTAACAGTTCCTTGTTGCGC 59.398 47.619 0.00 0.00 44.89 6.09
1075 1145 1.589113 GAAGCCAGAGAGACAGCGT 59.411 57.895 0.00 0.00 0.00 5.07
1151 1221 2.121735 TCCATCACCCACCCACCA 60.122 61.111 0.00 0.00 0.00 4.17
1156 1226 3.966543 CACCCACCCACCACCTCC 61.967 72.222 0.00 0.00 0.00 4.30
1157 1227 4.202030 ACCCACCCACCACCTCCT 62.202 66.667 0.00 0.00 0.00 3.69
1158 1228 3.330720 CCCACCCACCACCTCCTC 61.331 72.222 0.00 0.00 0.00 3.71
1173 1243 6.335850 ACCACCTCCTCTCTCCTCTATATAAA 59.664 42.308 0.00 0.00 0.00 1.40
1401 1474 2.027751 GACTACCGCATCCCGCTC 59.972 66.667 0.00 0.00 39.08 5.03
1740 1813 4.796231 CGCGTCGCCAGTAAGCCT 62.796 66.667 12.44 0.00 0.00 4.58
1763 1839 3.930012 CCCGCTCCGATTCCCCTC 61.930 72.222 0.00 0.00 0.00 4.30
1772 1853 1.830836 GATTCCCCTCCCTTCCGAC 59.169 63.158 0.00 0.00 0.00 4.79
1776 1857 2.044252 CCCTCCCTTCCGACTCGA 60.044 66.667 0.00 0.00 0.00 4.04
1812 1893 2.983930 CTCCGCCTCCGATCGATCC 61.984 68.421 18.66 4.28 36.29 3.36
2101 2182 3.465403 CTCGAGGAGTGGGGCCTG 61.465 72.222 3.91 0.00 35.44 4.85
2239 2320 3.400054 GGGGAGGGGGACGACAAG 61.400 72.222 0.00 0.00 0.00 3.16
2457 2549 3.675698 CGAACTGACCTGCTCTTTAGTTC 59.324 47.826 0.00 0.00 40.14 3.01
2530 2625 1.078143 AGCCATCGCTGGTTTCCTC 60.078 57.895 7.21 0.00 46.19 3.71
2633 2728 4.020751 TGAGAACAGAGTCTTGGAGATTGG 60.021 45.833 0.00 0.00 0.00 3.16
2657 2752 3.467374 TTCTGCATGTTTTGGTTTCCC 57.533 42.857 0.00 0.00 0.00 3.97
2664 2759 2.567985 TGTTTTGGTTTCCCTCTCGTC 58.432 47.619 0.00 0.00 0.00 4.20
2672 2767 0.537188 TTCCCTCTCGTCCTGATTGC 59.463 55.000 0.00 0.00 0.00 3.56
2678 2773 1.066858 TCTCGTCCTGATTGCCAAGTC 60.067 52.381 0.00 0.00 0.00 3.01
2683 2778 4.404394 TCGTCCTGATTGCCAAGTCTATTA 59.596 41.667 0.00 0.00 0.00 0.98
2732 2827 7.562135 ACCTGTTCTTAGTAGTTCTTGTTCAA 58.438 34.615 0.00 0.00 0.00 2.69
2733 2828 7.711339 ACCTGTTCTTAGTAGTTCTTGTTCAAG 59.289 37.037 6.24 6.24 0.00 3.02
2763 2858 5.894298 ATACACTGAGATGCTATTTGGGA 57.106 39.130 0.00 0.00 0.00 4.37
2805 2900 0.322975 GTTGAGAGCAGAGCCTTGGA 59.677 55.000 0.00 0.00 0.00 3.53
2806 2901 1.065564 GTTGAGAGCAGAGCCTTGGAT 60.066 52.381 0.00 0.00 0.00 3.41
2807 2902 2.165357 TGAGAGCAGAGCCTTGGATA 57.835 50.000 0.00 0.00 0.00 2.59
2988 3085 6.432403 AAATGGGAATATCTCTGACTCCTC 57.568 41.667 0.00 0.00 0.00 3.71
2998 3095 3.508012 TCTCTGACTCCTCTGCTTTACAC 59.492 47.826 0.00 0.00 0.00 2.90
3094 3191 8.475639 TGGTTCTACATGTTTCTTATCTACTCC 58.524 37.037 2.30 0.00 0.00 3.85
3095 3192 7.927092 GGTTCTACATGTTTCTTATCTACTCCC 59.073 40.741 2.30 0.00 0.00 4.30
3096 3193 8.697292 GTTCTACATGTTTCTTATCTACTCCCT 58.303 37.037 2.30 0.00 0.00 4.20
3097 3194 8.466617 TCTACATGTTTCTTATCTACTCCCTC 57.533 38.462 2.30 0.00 0.00 4.30
3098 3195 6.487299 ACATGTTTCTTATCTACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
3099 3196 5.069251 ACATGTTTCTTATCTACTCCCTCCG 59.931 44.000 0.00 0.00 0.00 4.63
3100 3197 4.607239 TGTTTCTTATCTACTCCCTCCGT 58.393 43.478 0.00 0.00 0.00 4.69
3101 3198 5.021458 TGTTTCTTATCTACTCCCTCCGTT 58.979 41.667 0.00 0.00 0.00 4.44
3102 3199 5.126707 TGTTTCTTATCTACTCCCTCCGTTC 59.873 44.000 0.00 0.00 0.00 3.95
3103 3200 3.830121 TCTTATCTACTCCCTCCGTTCC 58.170 50.000 0.00 0.00 0.00 3.62
3104 3201 3.462579 TCTTATCTACTCCCTCCGTTCCT 59.537 47.826 0.00 0.00 0.00 3.36
3105 3202 4.662179 TCTTATCTACTCCCTCCGTTCCTA 59.338 45.833 0.00 0.00 0.00 2.94
3106 3203 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
3107 3204 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3108 3205 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3109 3206 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3110 3207 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3111 3208 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
3112 3209 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3113 3210 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3114 3211 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3115 3212 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3116 3213 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3117 3214 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3118 3215 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3119 3216 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3120 3217 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3121 3218 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3122 3219 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3123 3220 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3136 3233 9.613428 TTTGTCTTTCTAGAGATTTCAACAAGA 57.387 29.630 0.00 0.00 0.00 3.02
3137 3234 8.824159 TGTCTTTCTAGAGATTTCAACAAGAG 57.176 34.615 0.00 0.00 0.00 2.85
3138 3235 8.642432 TGTCTTTCTAGAGATTTCAACAAGAGA 58.358 33.333 0.00 0.00 0.00 3.10
3139 3236 8.921670 GTCTTTCTAGAGATTTCAACAAGAGAC 58.078 37.037 0.00 0.00 0.00 3.36
3140 3237 8.865090 TCTTTCTAGAGATTTCAACAAGAGACT 58.135 33.333 0.00 0.00 0.00 3.24
3142 3239 9.915629 TTTCTAGAGATTTCAACAAGAGACTAC 57.084 33.333 0.00 0.00 0.00 2.73
3143 3240 8.637196 TCTAGAGATTTCAACAAGAGACTACA 57.363 34.615 0.00 0.00 0.00 2.74
3144 3241 9.249053 TCTAGAGATTTCAACAAGAGACTACAT 57.751 33.333 0.00 0.00 0.00 2.29
3147 3244 7.971168 AGAGATTTCAACAAGAGACTACATACG 59.029 37.037 0.00 0.00 0.00 3.06
3148 3245 7.036220 AGATTTCAACAAGAGACTACATACGG 58.964 38.462 0.00 0.00 0.00 4.02
3149 3246 5.970317 TTCAACAAGAGACTACATACGGA 57.030 39.130 0.00 0.00 0.00 4.69
3150 3247 5.562506 TCAACAAGAGACTACATACGGAG 57.437 43.478 0.00 0.00 0.00 4.63
3151 3248 4.106197 CAACAAGAGACTACATACGGAGC 58.894 47.826 0.00 0.00 0.00 4.70
3152 3249 2.355132 ACAAGAGACTACATACGGAGCG 59.645 50.000 0.00 0.00 0.00 5.03
3153 3250 2.612672 CAAGAGACTACATACGGAGCGA 59.387 50.000 0.00 0.00 0.00 4.93
3154 3251 2.915349 AGAGACTACATACGGAGCGAA 58.085 47.619 0.00 0.00 0.00 4.70
3155 3252 3.276857 AGAGACTACATACGGAGCGAAA 58.723 45.455 0.00 0.00 0.00 3.46
3156 3253 3.884091 AGAGACTACATACGGAGCGAAAT 59.116 43.478 0.00 0.00 0.00 2.17
3157 3254 3.966154 AGACTACATACGGAGCGAAATG 58.034 45.455 0.00 0.00 33.06 2.32
3158 3255 3.630769 AGACTACATACGGAGCGAAATGA 59.369 43.478 0.00 0.00 31.99 2.57
3159 3256 3.966154 ACTACATACGGAGCGAAATGAG 58.034 45.455 0.00 0.00 31.99 2.90
3160 3257 2.961526 ACATACGGAGCGAAATGAGT 57.038 45.000 0.00 0.00 31.99 3.41
3161 3258 2.540515 ACATACGGAGCGAAATGAGTG 58.459 47.619 0.00 0.00 31.99 3.51
3162 3259 2.165641 ACATACGGAGCGAAATGAGTGA 59.834 45.455 0.00 0.00 31.99 3.41
3163 3260 3.186909 CATACGGAGCGAAATGAGTGAA 58.813 45.455 0.00 0.00 0.00 3.18
3164 3261 2.386661 ACGGAGCGAAATGAGTGAAT 57.613 45.000 0.00 0.00 0.00 2.57
3165 3262 2.271800 ACGGAGCGAAATGAGTGAATC 58.728 47.619 0.00 0.00 0.00 2.52
3166 3263 2.093973 ACGGAGCGAAATGAGTGAATCT 60.094 45.455 0.00 0.00 0.00 2.40
3167 3264 3.130516 ACGGAGCGAAATGAGTGAATCTA 59.869 43.478 0.00 0.00 0.00 1.98
3168 3265 3.487574 CGGAGCGAAATGAGTGAATCTAC 59.512 47.826 0.00 0.00 0.00 2.59
3169 3266 4.433615 GGAGCGAAATGAGTGAATCTACA 58.566 43.478 0.00 0.00 0.00 2.74
3170 3267 4.268884 GGAGCGAAATGAGTGAATCTACAC 59.731 45.833 0.00 0.00 40.60 2.90
3219 3316 8.348983 CGTATACGGTAGTTCATTTGAAATCT 57.651 34.615 17.61 0.00 33.99 2.40
3220 3317 8.814235 CGTATACGGTAGTTCATTTGAAATCTT 58.186 33.333 17.61 0.00 33.99 2.40
3248 3345 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3249 3346 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3250 3347 4.788679 ACAAATATTTAGGAACGGAGGGG 58.211 43.478 0.00 0.00 0.00 4.79
3251 3348 4.142038 CAAATATTTAGGAACGGAGGGGG 58.858 47.826 0.00 0.00 0.00 5.40
3252 3349 2.574074 TATTTAGGAACGGAGGGGGT 57.426 50.000 0.00 0.00 0.00 4.95
3253 3350 2.574074 ATTTAGGAACGGAGGGGGTA 57.426 50.000 0.00 0.00 0.00 3.69
3254 3351 1.870064 TTTAGGAACGGAGGGGGTAG 58.130 55.000 0.00 0.00 0.00 3.18
3255 3352 0.688749 TTAGGAACGGAGGGGGTAGC 60.689 60.000 0.00 0.00 0.00 3.58
3256 3353 1.877672 TAGGAACGGAGGGGGTAGCA 61.878 60.000 0.00 0.00 0.00 3.49
3257 3354 2.295602 GGAACGGAGGGGGTAGCAA 61.296 63.158 0.00 0.00 0.00 3.91
3258 3355 1.632965 GGAACGGAGGGGGTAGCAAT 61.633 60.000 0.00 0.00 0.00 3.56
3259 3356 0.255033 GAACGGAGGGGGTAGCAATT 59.745 55.000 0.00 0.00 0.00 2.32
3260 3357 1.487558 GAACGGAGGGGGTAGCAATTA 59.512 52.381 0.00 0.00 0.00 1.40
3261 3358 1.587066 ACGGAGGGGGTAGCAATTAA 58.413 50.000 0.00 0.00 0.00 1.40
3262 3359 1.211212 ACGGAGGGGGTAGCAATTAAC 59.789 52.381 0.00 0.00 0.00 2.01
3263 3360 1.210967 CGGAGGGGGTAGCAATTAACA 59.789 52.381 0.00 0.00 0.00 2.41
3264 3361 2.356330 CGGAGGGGGTAGCAATTAACAA 60.356 50.000 0.00 0.00 0.00 2.83
3265 3362 3.021695 GGAGGGGGTAGCAATTAACAAC 58.978 50.000 0.00 0.00 0.00 3.32
3266 3363 3.021695 GAGGGGGTAGCAATTAACAACC 58.978 50.000 0.00 0.00 0.00 3.77
3267 3364 2.380590 AGGGGGTAGCAATTAACAACCA 59.619 45.455 0.00 0.00 0.00 3.67
3268 3365 2.494471 GGGGGTAGCAATTAACAACCAC 59.506 50.000 0.00 0.00 0.00 4.16
3269 3366 3.158676 GGGGTAGCAATTAACAACCACA 58.841 45.455 0.00 0.00 0.00 4.17
3270 3367 3.192633 GGGGTAGCAATTAACAACCACAG 59.807 47.826 0.00 0.00 0.00 3.66
3271 3368 3.824443 GGGTAGCAATTAACAACCACAGT 59.176 43.478 0.00 0.00 0.00 3.55
3272 3369 4.082949 GGGTAGCAATTAACAACCACAGTC 60.083 45.833 0.00 0.00 0.00 3.51
3273 3370 4.082949 GGTAGCAATTAACAACCACAGTCC 60.083 45.833 0.00 0.00 0.00 3.85
3274 3371 3.832527 AGCAATTAACAACCACAGTCCT 58.167 40.909 0.00 0.00 0.00 3.85
3275 3372 4.215109 AGCAATTAACAACCACAGTCCTT 58.785 39.130 0.00 0.00 0.00 3.36
3276 3373 4.649218 AGCAATTAACAACCACAGTCCTTT 59.351 37.500 0.00 0.00 0.00 3.11
3277 3374 4.744631 GCAATTAACAACCACAGTCCTTTG 59.255 41.667 0.00 0.00 0.00 2.77
3278 3375 4.584327 ATTAACAACCACAGTCCTTTGC 57.416 40.909 0.00 0.00 0.00 3.68
3279 3376 2.143876 AACAACCACAGTCCTTTGCT 57.856 45.000 0.00 0.00 0.00 3.91
3280 3377 3.290948 AACAACCACAGTCCTTTGCTA 57.709 42.857 0.00 0.00 0.00 3.49
3281 3378 2.572290 ACAACCACAGTCCTTTGCTAC 58.428 47.619 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.716006 GCATGCACGACACAGCGT 61.716 61.111 14.21 0.00 46.88 5.07
77 78 3.283751 CAATGTGAAACGGGGGCTAATA 58.716 45.455 0.00 0.00 42.39 0.98
81 82 2.275380 GCAATGTGAAACGGGGGCT 61.275 57.895 0.00 0.00 42.39 5.19
84 85 1.080569 GCTGCAATGTGAAACGGGG 60.081 57.895 0.00 0.00 42.39 5.73
299 314 3.000727 CAGATTCCGGTGTTTCTGGTAC 58.999 50.000 0.00 0.00 42.90 3.34
303 318 2.494059 ACACAGATTCCGGTGTTTCTG 58.506 47.619 17.81 17.81 46.83 3.02
315 330 5.568620 AAGAACTGACCCTTACACAGATT 57.431 39.130 0.00 0.00 35.85 2.40
316 331 5.568620 AAAGAACTGACCCTTACACAGAT 57.431 39.130 0.00 0.00 35.85 2.90
319 334 4.204012 CCAAAAGAACTGACCCTTACACA 58.796 43.478 0.00 0.00 0.00 3.72
321 336 3.219281 GCCAAAAGAACTGACCCTTACA 58.781 45.455 0.00 0.00 0.00 2.41
323 338 3.486383 CTGCCAAAAGAACTGACCCTTA 58.514 45.455 0.00 0.00 0.00 2.69
324 339 2.310538 CTGCCAAAAGAACTGACCCTT 58.689 47.619 0.00 0.00 0.00 3.95
325 340 1.986882 CTGCCAAAAGAACTGACCCT 58.013 50.000 0.00 0.00 0.00 4.34
326 341 0.315251 GCTGCCAAAAGAACTGACCC 59.685 55.000 0.00 0.00 0.00 4.46
327 342 1.322442 AGCTGCCAAAAGAACTGACC 58.678 50.000 0.00 0.00 0.00 4.02
328 343 4.568152 TTAAGCTGCCAAAAGAACTGAC 57.432 40.909 0.00 0.00 0.00 3.51
329 344 5.590530 TTTTAAGCTGCCAAAAGAACTGA 57.409 34.783 0.00 0.00 0.00 3.41
330 345 6.849588 ATTTTTAAGCTGCCAAAAGAACTG 57.150 33.333 0.00 0.00 0.00 3.16
331 346 7.171508 GCTTATTTTTAAGCTGCCAAAAGAACT 59.828 33.333 9.83 0.00 46.49 3.01
332 347 7.290842 GCTTATTTTTAAGCTGCCAAAAGAAC 58.709 34.615 9.83 0.00 46.49 3.01
333 348 7.420184 GCTTATTTTTAAGCTGCCAAAAGAA 57.580 32.000 9.83 3.01 46.49 2.52
345 360 4.200092 AGAGGAGGCGGCTTATTTTTAAG 58.800 43.478 14.76 0.00 0.00 1.85
346 361 4.230745 AGAGGAGGCGGCTTATTTTTAA 57.769 40.909 14.76 0.00 0.00 1.52
347 362 3.926058 AGAGGAGGCGGCTTATTTTTA 57.074 42.857 14.76 0.00 0.00 1.52
348 363 2.808906 AGAGGAGGCGGCTTATTTTT 57.191 45.000 14.76 0.00 0.00 1.94
349 364 2.026262 TGAAGAGGAGGCGGCTTATTTT 60.026 45.455 14.76 6.40 0.00 1.82
350 365 1.559682 TGAAGAGGAGGCGGCTTATTT 59.440 47.619 14.76 5.80 0.00 1.40
351 366 1.139853 CTGAAGAGGAGGCGGCTTATT 59.860 52.381 14.76 0.59 0.00 1.40
352 367 0.755686 CTGAAGAGGAGGCGGCTTAT 59.244 55.000 14.76 4.47 0.00 1.73
353 368 1.961180 GCTGAAGAGGAGGCGGCTTA 61.961 60.000 14.76 0.00 0.00 3.09
354 369 2.985456 CTGAAGAGGAGGCGGCTT 59.015 61.111 14.76 0.00 0.00 4.35
355 370 3.780173 GCTGAAGAGGAGGCGGCT 61.780 66.667 13.09 13.09 0.00 5.52
356 371 2.811542 AAAGCTGAAGAGGAGGCGGC 62.812 60.000 0.00 0.00 0.00 6.53
357 372 0.322008 AAAAGCTGAAGAGGAGGCGG 60.322 55.000 0.00 0.00 0.00 6.13
358 373 1.082690 GAAAAGCTGAAGAGGAGGCG 58.917 55.000 0.00 0.00 0.00 5.52
359 374 2.289945 TGAGAAAAGCTGAAGAGGAGGC 60.290 50.000 0.00 0.00 0.00 4.70
360 375 3.692257 TGAGAAAAGCTGAAGAGGAGG 57.308 47.619 0.00 0.00 0.00 4.30
361 376 6.405538 ACTTATGAGAAAAGCTGAAGAGGAG 58.594 40.000 0.00 0.00 0.00 3.69
362 377 6.365970 ACTTATGAGAAAAGCTGAAGAGGA 57.634 37.500 0.00 0.00 0.00 3.71
363 378 6.622462 GCAACTTATGAGAAAAGCTGAAGAGG 60.622 42.308 0.00 0.00 0.00 3.69
364 379 6.313252 GCAACTTATGAGAAAAGCTGAAGAG 58.687 40.000 0.00 0.00 0.00 2.85
365 380 5.182001 GGCAACTTATGAGAAAAGCTGAAGA 59.818 40.000 0.00 0.00 0.00 2.87
366 381 5.397326 GGCAACTTATGAGAAAAGCTGAAG 58.603 41.667 0.00 0.00 0.00 3.02
367 382 5.376854 GGCAACTTATGAGAAAAGCTGAA 57.623 39.130 0.00 0.00 0.00 3.02
384 399 4.273318 ACCCAATGAATAAGAGAGGCAAC 58.727 43.478 0.00 0.00 0.00 4.17
385 400 4.591321 ACCCAATGAATAAGAGAGGCAA 57.409 40.909 0.00 0.00 0.00 4.52
386 401 4.591321 AACCCAATGAATAAGAGAGGCA 57.409 40.909 0.00 0.00 0.00 4.75
387 402 4.339530 GGAAACCCAATGAATAAGAGAGGC 59.660 45.833 0.00 0.00 0.00 4.70
388 403 5.509498 TGGAAACCCAATGAATAAGAGAGG 58.491 41.667 0.00 0.00 0.00 3.69
389 404 6.830324 TGATGGAAACCCAATGAATAAGAGAG 59.170 38.462 0.00 0.00 37.24 3.20
390 405 6.730447 TGATGGAAACCCAATGAATAAGAGA 58.270 36.000 0.00 0.00 37.24 3.10
391 406 7.431249 CATGATGGAAACCCAATGAATAAGAG 58.569 38.462 0.00 0.00 37.24 2.85
392 407 6.324512 CCATGATGGAAACCCAATGAATAAGA 59.675 38.462 5.27 0.00 40.96 2.10
393 408 6.098695 ACCATGATGGAAACCCAATGAATAAG 59.901 38.462 20.11 0.00 40.96 1.73
394 409 5.963253 ACCATGATGGAAACCCAATGAATAA 59.037 36.000 20.11 0.00 40.96 1.40
395 410 5.527385 ACCATGATGGAAACCCAATGAATA 58.473 37.500 20.11 0.00 40.96 1.75
396 411 4.364470 ACCATGATGGAAACCCAATGAAT 58.636 39.130 20.11 0.00 40.96 2.57
397 412 3.788933 ACCATGATGGAAACCCAATGAA 58.211 40.909 20.11 0.00 40.96 2.57
398 413 3.471430 ACCATGATGGAAACCCAATGA 57.529 42.857 20.11 0.00 40.96 2.57
399 414 6.950041 AGATATACCATGATGGAAACCCAATG 59.050 38.462 20.11 0.00 40.96 2.82
400 415 7.107435 AGATATACCATGATGGAAACCCAAT 57.893 36.000 20.11 1.52 40.96 3.16
401 416 6.529084 AGATATACCATGATGGAAACCCAA 57.471 37.500 20.11 0.00 40.96 4.12
402 417 7.640577 TTAGATATACCATGATGGAAACCCA 57.359 36.000 20.11 0.00 40.96 4.51
403 418 9.533831 AAATTAGATATACCATGATGGAAACCC 57.466 33.333 20.11 4.27 40.96 4.11
462 477 4.959839 AGTTGCTTCTCCCCAGTTTAAAAA 59.040 37.500 0.00 0.00 0.00 1.94
463 478 4.542697 AGTTGCTTCTCCCCAGTTTAAAA 58.457 39.130 0.00 0.00 0.00 1.52
464 479 4.178956 AGTTGCTTCTCCCCAGTTTAAA 57.821 40.909 0.00 0.00 0.00 1.52
465 480 3.876309 AGTTGCTTCTCCCCAGTTTAA 57.124 42.857 0.00 0.00 0.00 1.52
466 481 3.876309 AAGTTGCTTCTCCCCAGTTTA 57.124 42.857 0.00 0.00 0.00 2.01
467 482 2.755952 AAGTTGCTTCTCCCCAGTTT 57.244 45.000 0.00 0.00 0.00 2.66
468 483 2.711547 AGTAAGTTGCTTCTCCCCAGTT 59.288 45.455 0.00 0.00 0.00 3.16
469 484 2.303311 GAGTAAGTTGCTTCTCCCCAGT 59.697 50.000 0.00 0.00 0.00 4.00
470 485 2.355209 GGAGTAAGTTGCTTCTCCCCAG 60.355 54.545 0.00 0.00 40.14 4.45
471 486 1.628846 GGAGTAAGTTGCTTCTCCCCA 59.371 52.381 0.00 0.00 40.14 4.96
472 487 2.404923 GGAGTAAGTTGCTTCTCCCC 57.595 55.000 0.00 0.00 40.14 4.81
474 489 2.093394 GGAGGGAGTAAGTTGCTTCTCC 60.093 54.545 20.05 20.05 43.84 3.71
475 490 2.417515 CGGAGGGAGTAAGTTGCTTCTC 60.418 54.545 13.13 13.13 0.00 2.87
476 491 1.550976 CGGAGGGAGTAAGTTGCTTCT 59.449 52.381 0.00 0.00 0.00 2.85
477 492 1.275573 ACGGAGGGAGTAAGTTGCTTC 59.724 52.381 0.00 0.00 0.00 3.86
478 493 1.349067 ACGGAGGGAGTAAGTTGCTT 58.651 50.000 0.00 0.00 0.00 3.91
479 494 1.823610 GTACGGAGGGAGTAAGTTGCT 59.176 52.381 0.00 0.00 0.00 3.91
480 495 1.468736 CGTACGGAGGGAGTAAGTTGC 60.469 57.143 7.57 0.00 0.00 4.17
481 496 1.133790 CCGTACGGAGGGAGTAAGTTG 59.866 57.143 30.64 0.00 37.50 3.16
482 497 1.004745 TCCGTACGGAGGGAGTAAGTT 59.995 52.381 32.61 0.00 39.76 2.66
483 498 0.620556 TCCGTACGGAGGGAGTAAGT 59.379 55.000 32.61 0.00 39.76 2.24
484 499 1.755179 TTCCGTACGGAGGGAGTAAG 58.245 55.000 33.67 5.82 46.06 2.34
485 500 2.442236 ATTCCGTACGGAGGGAGTAA 57.558 50.000 33.67 19.81 46.06 2.24
486 501 2.442236 AATTCCGTACGGAGGGAGTA 57.558 50.000 33.67 20.54 46.06 2.59
487 502 2.027385 GTAATTCCGTACGGAGGGAGT 58.973 52.381 33.67 22.32 46.06 3.85
488 503 2.305009 AGTAATTCCGTACGGAGGGAG 58.695 52.381 33.67 8.83 46.06 4.30
489 504 2.428171 CAAGTAATTCCGTACGGAGGGA 59.572 50.000 33.67 22.01 46.06 4.20
490 505 2.167075 ACAAGTAATTCCGTACGGAGGG 59.833 50.000 33.67 20.89 46.06 4.30
491 506 3.119388 TGACAAGTAATTCCGTACGGAGG 60.119 47.826 33.67 20.29 46.06 4.30
492 507 4.100707 TGACAAGTAATTCCGTACGGAG 57.899 45.455 33.67 23.26 46.06 4.63
493 508 4.724074 ATGACAAGTAATTCCGTACGGA 57.276 40.909 32.61 32.61 43.52 4.69
494 509 6.890663 TTAATGACAAGTAATTCCGTACGG 57.109 37.500 28.66 28.66 0.00 4.02
495 510 9.205916 CATTTTAATGACAAGTAATTCCGTACG 57.794 33.333 8.69 8.69 38.70 3.67
496 511 9.498307 CCATTTTAATGACAAGTAATTCCGTAC 57.502 33.333 4.07 0.00 38.70 3.67
497 512 9.451002 TCCATTTTAATGACAAGTAATTCCGTA 57.549 29.630 4.07 0.00 38.70 4.02
498 513 8.343168 TCCATTTTAATGACAAGTAATTCCGT 57.657 30.769 4.07 0.00 38.70 4.69
499 514 9.236691 CATCCATTTTAATGACAAGTAATTCCG 57.763 33.333 4.07 0.00 38.70 4.30
552 567 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
553 568 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
555 570 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
556 571 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
558 573 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
562 577 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
563 578 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
564 579 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
565 580 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
566 581 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
567 582 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
568 583 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
569 584 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
570 585 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
571 586 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
572 587 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
573 588 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
574 589 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
575 590 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
576 591 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
577 592 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
578 593 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
579 594 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
580 595 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
581 596 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
582 597 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
583 598 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
584 599 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
585 600 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
586 601 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
587 602 0.828677 AAAATACTCCCTCCGTCCGG 59.171 55.000 0.00 0.00 0.00 5.14
588 603 2.685850 AAAAATACTCCCTCCGTCCG 57.314 50.000 0.00 0.00 0.00 4.79
604 619 5.257082 AGTTCTTTTGAGCGGCTTAAAAA 57.743 34.783 26.09 21.77 30.68 1.94
605 620 4.911514 AGTTCTTTTGAGCGGCTTAAAA 57.088 36.364 25.06 25.06 34.69 1.52
606 621 4.083484 GCTAGTTCTTTTGAGCGGCTTAAA 60.083 41.667 15.00 15.00 34.69 1.52
607 622 3.435671 GCTAGTTCTTTTGAGCGGCTTAA 59.564 43.478 2.97 2.84 34.69 1.85
608 623 3.000727 GCTAGTTCTTTTGAGCGGCTTA 58.999 45.455 2.97 0.00 34.69 3.09
609 624 1.807142 GCTAGTTCTTTTGAGCGGCTT 59.193 47.619 2.97 0.00 34.69 4.35
610 625 1.443802 GCTAGTTCTTTTGAGCGGCT 58.556 50.000 0.00 0.00 34.69 5.52
611 626 0.448197 GGCTAGTTCTTTTGAGCGGC 59.552 55.000 0.00 0.00 35.71 6.53
612 627 1.087501 GGGCTAGTTCTTTTGAGCGG 58.912 55.000 0.00 0.00 35.71 5.52
613 628 2.100605 AGGGCTAGTTCTTTTGAGCG 57.899 50.000 0.00 0.00 35.71 5.03
614 629 5.959618 TTTTAGGGCTAGTTCTTTTGAGC 57.040 39.130 0.00 0.00 0.00 4.26
615 630 6.071952 TGCATTTTAGGGCTAGTTCTTTTGAG 60.072 38.462 0.00 0.00 0.00 3.02
616 631 5.772672 TGCATTTTAGGGCTAGTTCTTTTGA 59.227 36.000 0.00 0.00 0.00 2.69
617 632 6.024552 TGCATTTTAGGGCTAGTTCTTTTG 57.975 37.500 0.00 0.00 0.00 2.44
618 633 6.351286 CCATGCATTTTAGGGCTAGTTCTTTT 60.351 38.462 0.00 0.00 0.00 2.27
619 634 5.127682 CCATGCATTTTAGGGCTAGTTCTTT 59.872 40.000 0.00 0.00 0.00 2.52
620 635 4.646492 CCATGCATTTTAGGGCTAGTTCTT 59.354 41.667 0.00 0.00 0.00 2.52
621 636 4.210331 CCATGCATTTTAGGGCTAGTTCT 58.790 43.478 0.00 0.00 0.00 3.01
622 637 3.243535 GCCATGCATTTTAGGGCTAGTTC 60.244 47.826 15.80 0.00 41.51 3.01
623 638 2.695147 GCCATGCATTTTAGGGCTAGTT 59.305 45.455 15.80 0.00 41.51 2.24
624 639 2.310538 GCCATGCATTTTAGGGCTAGT 58.689 47.619 15.80 0.00 41.51 2.57
625 640 2.309613 TGCCATGCATTTTAGGGCTAG 58.690 47.619 21.62 0.00 44.80 3.42
626 641 2.450867 TGCCATGCATTTTAGGGCTA 57.549 45.000 21.62 9.00 44.80 3.93
627 642 3.303462 TGCCATGCATTTTAGGGCT 57.697 47.368 21.62 0.00 44.80 5.19
642 657 7.733969 ACACATCATCTATCTATGGATATGCC 58.266 38.462 0.00 0.00 34.37 4.40
647 662 8.211030 TCCAAACACATCATCTATCTATGGAT 57.789 34.615 0.00 0.00 36.07 3.41
648 663 7.616528 TCCAAACACATCATCTATCTATGGA 57.383 36.000 0.00 0.00 0.00 3.41
662 677 0.178953 AGGCCAGCTTCCAAACACAT 60.179 50.000 5.01 0.00 0.00 3.21
669 684 1.419012 CATCTATCAGGCCAGCTTCCA 59.581 52.381 5.01 0.00 0.00 3.53
676 691 3.262660 CAGGCTAATCATCTATCAGGCCA 59.737 47.826 5.01 0.00 40.61 5.36
678 693 4.550076 ACAGGCTAATCATCTATCAGGC 57.450 45.455 0.00 0.00 0.00 4.85
679 694 4.694509 GCAACAGGCTAATCATCTATCAGG 59.305 45.833 0.00 0.00 40.25 3.86
681 696 5.059161 GTGCAACAGGCTAATCATCTATCA 58.941 41.667 0.00 0.00 45.15 2.15
687 702 2.113860 ACGTGCAACAGGCTAATCAT 57.886 45.000 0.00 0.00 45.15 2.45
696 739 0.800300 ACGGCAAAAACGTGCAACAG 60.800 50.000 0.00 0.00 46.81 3.16
698 741 0.716666 AAACGGCAAAAACGTGCAAC 59.283 45.000 0.00 0.00 46.81 4.17
713 756 6.055805 CGTTATTGCAAAAGCAAGTTAAACG 58.944 36.000 18.72 18.72 33.71 3.60
723 766 2.986479 CTCAACCCGTTATTGCAAAAGC 59.014 45.455 1.71 0.00 0.00 3.51
779 822 7.075741 ACTACAGCAAGCTTTTAACATTTACG 58.924 34.615 0.00 0.00 0.00 3.18
781 824 9.280174 ACTACTACAGCAAGCTTTTAACATTTA 57.720 29.630 0.00 0.00 0.00 1.40
793 840 7.129109 TGAAATGTTTACTACTACAGCAAGC 57.871 36.000 0.00 0.00 0.00 4.01
810 857 7.012704 GCTACCATTGTATCACAGATGAAATGT 59.987 37.037 11.87 0.00 38.69 2.71
906 975 8.849168 GGATTTCAATTTCCTTGGACAAATTTT 58.151 29.630 0.00 0.00 35.43 1.82
948 1017 1.378119 CATGCTGCTCCTCCTGCAA 60.378 57.895 0.00 0.00 41.83 4.08
994 1064 6.966534 ATCAAACACTCCAGACATTTCTTT 57.033 33.333 0.00 0.00 0.00 2.52
1012 1082 6.293190 CGCAACAAGGAACTGTTACTATCAAA 60.293 38.462 5.55 0.00 40.86 2.69
1033 1103 3.345808 GCTGTCCGACTTGCGCAA 61.346 61.111 23.48 23.48 39.11 4.85
1056 1126 1.153667 CGCTGTCTCTCTGGCTTCC 60.154 63.158 0.00 0.00 0.00 3.46
1075 1145 2.951269 CTGATTGGTCCAGCTGCAA 58.049 52.632 8.66 8.00 0.00 4.08
1103 1173 4.615588 ACTCTCTCAAGTTCCTTCTTGG 57.384 45.455 6.60 0.00 43.25 3.61
1108 1178 4.336713 GCAACAAACTCTCTCAAGTTCCTT 59.663 41.667 0.00 0.00 38.52 3.36
1151 1221 6.522804 CGGTTTATATAGAGGAGAGAGGAGGT 60.523 46.154 0.00 0.00 0.00 3.85
1156 1226 5.010933 TGCCGGTTTATATAGAGGAGAGAG 58.989 45.833 1.90 0.00 0.00 3.20
1157 1227 4.765856 GTGCCGGTTTATATAGAGGAGAGA 59.234 45.833 1.90 0.00 0.00 3.10
1158 1228 4.379603 CGTGCCGGTTTATATAGAGGAGAG 60.380 50.000 1.90 0.00 0.00 3.20
1772 1853 2.864968 AGAGAAAAACCGACGATCGAG 58.135 47.619 24.34 14.83 43.74 4.04
1776 1857 3.586892 GGAGAAGAGAAAAACCGACGAT 58.413 45.455 0.00 0.00 0.00 3.73
1948 2029 5.009911 CCACTTGAACCACTTCATCATGAAA 59.990 40.000 0.00 0.00 35.73 2.69
2101 2182 1.300233 GGTGATCATCTCCGGCGAC 60.300 63.158 9.30 0.00 0.00 5.19
2182 2263 0.250338 AGTTGTCGAAGAAGGTGGCC 60.250 55.000 0.00 0.00 39.69 5.36
2235 2316 1.148273 TCTTGTTCCTGGCGCTTGT 59.852 52.632 7.64 0.00 0.00 3.16
2237 2318 1.961277 CGTCTTGTTCCTGGCGCTT 60.961 57.895 7.64 0.00 0.00 4.68
2239 2320 1.741770 ATCGTCTTGTTCCTGGCGC 60.742 57.895 0.00 0.00 0.00 6.53
2286 2367 0.981277 CTAAGGGAAAGGGGAGCGGA 60.981 60.000 0.00 0.00 0.00 5.54
2353 2434 1.000233 TTCGCGACGAAGGAACGAAG 61.000 55.000 9.15 0.00 41.05 3.79
2457 2549 5.673337 TCAAATCTGAAGAACTTTGACGG 57.327 39.130 5.41 0.00 31.74 4.79
2530 2625 6.033341 TGAACAGGTTTCGAATTCAACAAAG 58.967 36.000 8.33 0.67 0.00 2.77
2633 2728 6.466308 GGAAACCAAAACATGCAGAAATAC 57.534 37.500 0.00 0.00 0.00 1.89
2657 2752 1.066573 ACTTGGCAATCAGGACGAGAG 60.067 52.381 0.00 0.00 31.25 3.20
2664 2759 5.059833 GTCCTAATAGACTTGGCAATCAGG 58.940 45.833 0.00 4.33 33.79 3.86
2672 2767 6.656632 TGAGCATAGTCCTAATAGACTTGG 57.343 41.667 0.00 0.00 44.83 3.61
2678 2773 8.867935 CGAATTCAATGAGCATAGTCCTAATAG 58.132 37.037 6.22 0.00 0.00 1.73
2683 2778 3.812053 GCGAATTCAATGAGCATAGTCCT 59.188 43.478 6.22 0.00 0.00 3.85
2732 2827 9.581289 AATAGCATCTCAGTGTATAACTACTCT 57.419 33.333 0.00 0.00 36.83 3.24
2763 2858 0.178924 AGCACCCCCTTCTGCATTTT 60.179 50.000 0.00 0.00 35.73 1.82
2988 3085 6.728200 TCAGTTGAAATGAAGTGTAAAGCAG 58.272 36.000 0.00 0.00 0.00 4.24
3091 3188 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3092 3189 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3093 3190 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3094 3191 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3095 3192 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3096 3193 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3097 3194 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3110 3207 9.613428 TCTTGTTGAAATCTCTAGAAAGACAAA 57.387 29.630 0.00 0.00 0.00 2.83
3111 3208 9.265901 CTCTTGTTGAAATCTCTAGAAAGACAA 57.734 33.333 0.00 0.00 0.00 3.18
3112 3209 8.642432 TCTCTTGTTGAAATCTCTAGAAAGACA 58.358 33.333 0.00 0.00 0.00 3.41
3113 3210 8.921670 GTCTCTTGTTGAAATCTCTAGAAAGAC 58.078 37.037 0.00 0.00 0.00 3.01
3114 3211 8.865090 AGTCTCTTGTTGAAATCTCTAGAAAGA 58.135 33.333 0.00 0.00 0.00 2.52
3116 3213 9.915629 GTAGTCTCTTGTTGAAATCTCTAGAAA 57.084 33.333 0.00 0.00 0.00 2.52
3117 3214 9.078990 TGTAGTCTCTTGTTGAAATCTCTAGAA 57.921 33.333 0.00 0.00 0.00 2.10
3118 3215 8.637196 TGTAGTCTCTTGTTGAAATCTCTAGA 57.363 34.615 0.00 0.00 0.00 2.43
3121 3218 7.971168 CGTATGTAGTCTCTTGTTGAAATCTCT 59.029 37.037 0.00 0.00 0.00 3.10
3122 3219 7.221067 CCGTATGTAGTCTCTTGTTGAAATCTC 59.779 40.741 0.00 0.00 0.00 2.75
3123 3220 7.036220 CCGTATGTAGTCTCTTGTTGAAATCT 58.964 38.462 0.00 0.00 0.00 2.40
3124 3221 7.033791 TCCGTATGTAGTCTCTTGTTGAAATC 58.966 38.462 0.00 0.00 0.00 2.17
3125 3222 6.931838 TCCGTATGTAGTCTCTTGTTGAAAT 58.068 36.000 0.00 0.00 0.00 2.17
3126 3223 6.335471 TCCGTATGTAGTCTCTTGTTGAAA 57.665 37.500 0.00 0.00 0.00 2.69
3127 3224 5.621555 GCTCCGTATGTAGTCTCTTGTTGAA 60.622 44.000 0.00 0.00 0.00 2.69
3128 3225 4.142447 GCTCCGTATGTAGTCTCTTGTTGA 60.142 45.833 0.00 0.00 0.00 3.18
3129 3226 4.106197 GCTCCGTATGTAGTCTCTTGTTG 58.894 47.826 0.00 0.00 0.00 3.33
3130 3227 3.181499 CGCTCCGTATGTAGTCTCTTGTT 60.181 47.826 0.00 0.00 0.00 2.83
3131 3228 2.355132 CGCTCCGTATGTAGTCTCTTGT 59.645 50.000 0.00 0.00 0.00 3.16
3132 3229 2.612672 TCGCTCCGTATGTAGTCTCTTG 59.387 50.000 0.00 0.00 0.00 3.02
3133 3230 2.915349 TCGCTCCGTATGTAGTCTCTT 58.085 47.619 0.00 0.00 0.00 2.85
3134 3231 2.616634 TCGCTCCGTATGTAGTCTCT 57.383 50.000 0.00 0.00 0.00 3.10
3135 3232 3.687572 TTTCGCTCCGTATGTAGTCTC 57.312 47.619 0.00 0.00 0.00 3.36
3136 3233 3.630769 TCATTTCGCTCCGTATGTAGTCT 59.369 43.478 0.00 0.00 0.00 3.24
3137 3234 3.961182 TCATTTCGCTCCGTATGTAGTC 58.039 45.455 0.00 0.00 0.00 2.59
3138 3235 3.380637 ACTCATTTCGCTCCGTATGTAGT 59.619 43.478 0.00 0.00 0.00 2.73
3139 3236 3.731216 CACTCATTTCGCTCCGTATGTAG 59.269 47.826 0.00 0.00 0.00 2.74
3140 3237 3.379057 TCACTCATTTCGCTCCGTATGTA 59.621 43.478 0.00 0.00 0.00 2.29
3141 3238 2.165641 TCACTCATTTCGCTCCGTATGT 59.834 45.455 0.00 0.00 0.00 2.29
3142 3239 2.809446 TCACTCATTTCGCTCCGTATG 58.191 47.619 0.00 0.00 0.00 2.39
3143 3240 3.520290 TTCACTCATTTCGCTCCGTAT 57.480 42.857 0.00 0.00 0.00 3.06
3144 3241 3.130516 AGATTCACTCATTTCGCTCCGTA 59.869 43.478 0.00 0.00 0.00 4.02
3145 3242 2.093973 AGATTCACTCATTTCGCTCCGT 60.094 45.455 0.00 0.00 0.00 4.69
3146 3243 2.544685 AGATTCACTCATTTCGCTCCG 58.455 47.619 0.00 0.00 0.00 4.63
3147 3244 4.268884 GTGTAGATTCACTCATTTCGCTCC 59.731 45.833 0.00 0.00 35.68 4.70
3148 3245 5.105752 AGTGTAGATTCACTCATTTCGCTC 58.894 41.667 0.00 0.00 44.07 5.03
3149 3246 5.078411 AGTGTAGATTCACTCATTTCGCT 57.922 39.130 0.00 0.00 44.07 4.93
3194 3291 8.348983 AGATTTCAAATGAACTACCGTATACG 57.651 34.615 18.40 18.40 34.75 3.06
3222 3319 9.169592 CCTCCGTTCCTAAATATTTGTCTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
3223 3320 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3224 3321 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3225 3322 6.120220 CCCTCCGTTCCTAAATATTTGTCTT 58.880 40.000 11.05 0.00 0.00 3.01
3226 3323 5.397559 CCCCTCCGTTCCTAAATATTTGTCT 60.398 44.000 11.05 0.00 0.00 3.41
3227 3324 4.820173 CCCCTCCGTTCCTAAATATTTGTC 59.180 45.833 11.05 0.00 0.00 3.18
3228 3325 4.385977 CCCCCTCCGTTCCTAAATATTTGT 60.386 45.833 11.05 0.00 0.00 2.83
3229 3326 4.142038 CCCCCTCCGTTCCTAAATATTTG 58.858 47.826 11.05 1.40 0.00 2.32
3230 3327 3.789840 ACCCCCTCCGTTCCTAAATATTT 59.210 43.478 5.89 5.89 0.00 1.40
3231 3328 3.400419 ACCCCCTCCGTTCCTAAATATT 58.600 45.455 0.00 0.00 0.00 1.28
3232 3329 3.070525 ACCCCCTCCGTTCCTAAATAT 57.929 47.619 0.00 0.00 0.00 1.28
3233 3330 2.574074 ACCCCCTCCGTTCCTAAATA 57.426 50.000 0.00 0.00 0.00 1.40
3234 3331 2.405559 CTACCCCCTCCGTTCCTAAAT 58.594 52.381 0.00 0.00 0.00 1.40
3235 3332 1.870064 CTACCCCCTCCGTTCCTAAA 58.130 55.000 0.00 0.00 0.00 1.85
3236 3333 0.688749 GCTACCCCCTCCGTTCCTAA 60.689 60.000 0.00 0.00 0.00 2.69
3237 3334 1.075748 GCTACCCCCTCCGTTCCTA 60.076 63.158 0.00 0.00 0.00 2.94
3238 3335 2.365237 GCTACCCCCTCCGTTCCT 60.365 66.667 0.00 0.00 0.00 3.36
3239 3336 1.632965 ATTGCTACCCCCTCCGTTCC 61.633 60.000 0.00 0.00 0.00 3.62
3240 3337 0.255033 AATTGCTACCCCCTCCGTTC 59.745 55.000 0.00 0.00 0.00 3.95
3241 3338 1.587066 TAATTGCTACCCCCTCCGTT 58.413 50.000 0.00 0.00 0.00 4.44
3242 3339 1.211212 GTTAATTGCTACCCCCTCCGT 59.789 52.381 0.00 0.00 0.00 4.69
3243 3340 1.210967 TGTTAATTGCTACCCCCTCCG 59.789 52.381 0.00 0.00 0.00 4.63
3244 3341 3.021695 GTTGTTAATTGCTACCCCCTCC 58.978 50.000 0.00 0.00 0.00 4.30
3245 3342 3.021695 GGTTGTTAATTGCTACCCCCTC 58.978 50.000 0.00 0.00 0.00 4.30
3246 3343 2.380590 TGGTTGTTAATTGCTACCCCCT 59.619 45.455 10.91 0.00 32.18 4.79
3247 3344 2.494471 GTGGTTGTTAATTGCTACCCCC 59.506 50.000 10.91 0.00 32.18 5.40
3248 3345 3.158676 TGTGGTTGTTAATTGCTACCCC 58.841 45.455 10.91 3.37 32.18 4.95
3249 3346 3.824443 ACTGTGGTTGTTAATTGCTACCC 59.176 43.478 10.91 5.60 32.18 3.69
3250 3347 4.082949 GGACTGTGGTTGTTAATTGCTACC 60.083 45.833 7.95 7.95 33.45 3.18
3251 3348 4.760204 AGGACTGTGGTTGTTAATTGCTAC 59.240 41.667 0.00 0.00 0.00 3.58
3252 3349 4.980573 AGGACTGTGGTTGTTAATTGCTA 58.019 39.130 0.00 0.00 0.00 3.49
3253 3350 3.832527 AGGACTGTGGTTGTTAATTGCT 58.167 40.909 0.00 0.00 0.00 3.91
3254 3351 4.584327 AAGGACTGTGGTTGTTAATTGC 57.416 40.909 0.00 0.00 0.00 3.56
3255 3352 4.744631 GCAAAGGACTGTGGTTGTTAATTG 59.255 41.667 0.00 0.00 0.00 2.32
3256 3353 4.649218 AGCAAAGGACTGTGGTTGTTAATT 59.351 37.500 0.00 0.00 0.00 1.40
3257 3354 4.215109 AGCAAAGGACTGTGGTTGTTAAT 58.785 39.130 0.00 0.00 0.00 1.40
3258 3355 3.626930 AGCAAAGGACTGTGGTTGTTAA 58.373 40.909 0.00 0.00 0.00 2.01
3259 3356 3.290948 AGCAAAGGACTGTGGTTGTTA 57.709 42.857 0.00 0.00 0.00 2.41
3260 3357 2.143876 AGCAAAGGACTGTGGTTGTT 57.856 45.000 0.00 0.00 0.00 2.83
3261 3358 2.572290 GTAGCAAAGGACTGTGGTTGT 58.428 47.619 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.