Multiple sequence alignment - TraesCS1B01G101500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G101500 chr1B 100.000 3461 0 0 1 3461 111260821 111257361 0.000000e+00 6392.0
1 TraesCS1B01G101500 chr1D 95.369 1814 75 4 654 2466 69527248 69525443 0.000000e+00 2876.0
2 TraesCS1B01G101500 chr1D 91.463 164 12 2 1 164 69614996 69614835 1.250000e-54 224.0
3 TraesCS1B01G101500 chr1D 85.897 78 6 5 308 383 69614657 69614583 1.030000e-10 78.7
4 TraesCS1B01G101500 chr1A 92.492 1958 119 13 528 2466 69188756 69186808 0.000000e+00 2776.0
5 TraesCS1B01G101500 chr1A 85.770 1019 123 13 2464 3461 541710054 541711071 0.000000e+00 1059.0
6 TraesCS1B01G101500 chr7A 86.811 1016 114 10 2466 3461 675053454 675054469 0.000000e+00 1116.0
7 TraesCS1B01G101500 chr7A 84.550 589 69 14 2469 3036 7419518 7418931 6.480000e-157 564.0
8 TraesCS1B01G101500 chr7A 95.312 128 5 1 403 529 222666467 222666340 5.860000e-48 202.0
9 TraesCS1B01G101500 chr7A 89.344 122 11 2 3028 3148 7408591 7408471 5.980000e-33 152.0
10 TraesCS1B01G101500 chr7B 86.128 1002 118 11 2480 3461 640269490 640268490 0.000000e+00 1061.0
11 TraesCS1B01G101500 chr7B 86.623 613 54 12 2469 3062 637568827 637569430 0.000000e+00 652.0
12 TraesCS1B01G101500 chr7B 94.574 129 7 0 396 524 335623465 335623337 2.110000e-47 200.0
13 TraesCS1B01G101500 chr3B 75.886 875 201 10 2570 3438 525833081 525833951 4.100000e-119 438.0
14 TraesCS1B01G101500 chr6B 83.824 476 56 10 2466 2922 522093411 522093884 1.910000e-117 433.0
15 TraesCS1B01G101500 chr6B 74.058 902 226 8 2565 3461 683421358 683422256 2.540000e-96 363.0
16 TraesCS1B01G101500 chr5B 74.700 1000 224 21 2485 3461 697522818 697521825 5.340000e-113 418.0
17 TraesCS1B01G101500 chr2A 72.631 1224 272 44 1266 2446 713531392 713532595 2.560000e-91 346.0
18 TraesCS1B01G101500 chr2D 72.768 885 207 28 1592 2456 575239415 575240285 5.690000e-68 268.0
19 TraesCS1B01G101500 chr2D 94.488 127 7 0 396 522 592468109 592467983 2.730000e-46 196.0
20 TraesCS1B01G101500 chr2D 88.889 72 6 2 2485 2555 39411500 39411570 1.710000e-13 87.9
21 TraesCS1B01G101500 chr5D 95.276 127 5 1 396 522 282707990 282707865 2.110000e-47 200.0
22 TraesCS1B01G101500 chr5D 91.549 142 9 3 383 522 403907847 403907987 3.530000e-45 193.0
23 TraesCS1B01G101500 chr6D 92.701 137 7 3 387 522 110570720 110570854 9.800000e-46 195.0
24 TraesCS1B01G101500 chr6D 94.488 127 6 1 396 522 127277516 127277391 9.800000e-46 195.0
25 TraesCS1B01G101500 chr6D 92.701 137 6 3 387 522 247777271 247777138 9.800000e-46 195.0
26 TraesCS1B01G101500 chr6D 92.701 137 7 3 387 522 312264071 312264205 9.800000e-46 195.0
27 TraesCS1B01G101500 chr2B 71.708 767 167 35 1592 2319 691271109 691271864 5.940000e-38 169.0
28 TraesCS1B01G101500 chrUn 81.600 125 21 2 1276 1399 110785250 110785127 6.110000e-18 102.0
29 TraesCS1B01G101500 chr4A 81.395 129 21 3 1273 1399 685322245 685322118 6.110000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G101500 chr1B 111257361 111260821 3460 True 6392 6392 100.000 1 3461 1 chr1B.!!$R1 3460
1 TraesCS1B01G101500 chr1D 69525443 69527248 1805 True 2876 2876 95.369 654 2466 1 chr1D.!!$R1 1812
2 TraesCS1B01G101500 chr1A 69186808 69188756 1948 True 2776 2776 92.492 528 2466 1 chr1A.!!$R1 1938
3 TraesCS1B01G101500 chr1A 541710054 541711071 1017 False 1059 1059 85.770 2464 3461 1 chr1A.!!$F1 997
4 TraesCS1B01G101500 chr7A 675053454 675054469 1015 False 1116 1116 86.811 2466 3461 1 chr7A.!!$F1 995
5 TraesCS1B01G101500 chr7A 7418931 7419518 587 True 564 564 84.550 2469 3036 1 chr7A.!!$R2 567
6 TraesCS1B01G101500 chr7B 640268490 640269490 1000 True 1061 1061 86.128 2480 3461 1 chr7B.!!$R2 981
7 TraesCS1B01G101500 chr7B 637568827 637569430 603 False 652 652 86.623 2469 3062 1 chr7B.!!$F1 593
8 TraesCS1B01G101500 chr3B 525833081 525833951 870 False 438 438 75.886 2570 3438 1 chr3B.!!$F1 868
9 TraesCS1B01G101500 chr6B 683421358 683422256 898 False 363 363 74.058 2565 3461 1 chr6B.!!$F2 896
10 TraesCS1B01G101500 chr5B 697521825 697522818 993 True 418 418 74.700 2485 3461 1 chr5B.!!$R1 976
11 TraesCS1B01G101500 chr2A 713531392 713532595 1203 False 346 346 72.631 1266 2446 1 chr2A.!!$F1 1180
12 TraesCS1B01G101500 chr2D 575239415 575240285 870 False 268 268 72.768 1592 2456 1 chr2D.!!$F2 864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 363 0.039798 CAAGATTGTTGCGTGCTGCT 60.040 50.0 0.0 0.00 46.63 4.24 F
365 366 0.040157 GATTGTTGCGTGCTGCTCAA 60.040 50.0 0.0 8.47 46.63 3.02 F
366 367 0.385029 ATTGTTGCGTGCTGCTCAAA 59.615 45.0 0.0 0.00 46.63 2.69 F
368 369 0.385029 TGTTGCGTGCTGCTCAAATT 59.615 45.0 0.0 0.00 46.63 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2111 0.810648 ACGCGTTTCCGTAGTATCCA 59.189 50.000 5.58 0.00 40.08 3.41 R
2328 2390 1.179814 AGAAGGTCACGCCGAAGACT 61.180 55.000 12.47 0.00 43.70 3.24 R
2370 2432 4.467084 GCAATCGCGTCCTCCCCA 62.467 66.667 5.77 0.00 0.00 4.96 R
2467 2529 1.892474 TCTCCATTTGCCGGGAAAAAG 59.108 47.619 25.57 20.59 31.58 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.799126 ATGGAAGTAACCATCCGCAA 57.201 45.000 0.00 0.00 46.24 4.85
24 25 2.107950 TGGAAGTAACCATCCGCAAG 57.892 50.000 0.00 0.00 38.63 4.01
25 26 1.626321 TGGAAGTAACCATCCGCAAGA 59.374 47.619 0.00 0.00 38.63 3.02
26 27 2.039216 TGGAAGTAACCATCCGCAAGAA 59.961 45.455 0.00 0.00 38.63 2.52
27 28 3.279434 GGAAGTAACCATCCGCAAGAAT 58.721 45.455 0.00 0.00 43.02 2.40
28 29 3.312697 GGAAGTAACCATCCGCAAGAATC 59.687 47.826 0.00 0.00 43.02 2.52
29 30 3.627395 AGTAACCATCCGCAAGAATCA 57.373 42.857 0.00 0.00 43.02 2.57
30 31 3.950397 AGTAACCATCCGCAAGAATCAA 58.050 40.909 0.00 0.00 43.02 2.57
31 32 4.331968 AGTAACCATCCGCAAGAATCAAA 58.668 39.130 0.00 0.00 43.02 2.69
32 33 4.949856 AGTAACCATCCGCAAGAATCAAAT 59.050 37.500 0.00 0.00 43.02 2.32
33 34 3.788333 ACCATCCGCAAGAATCAAATG 57.212 42.857 0.00 0.00 43.02 2.32
34 35 2.428171 ACCATCCGCAAGAATCAAATGG 59.572 45.455 0.00 0.00 43.02 3.16
35 36 2.466846 CATCCGCAAGAATCAAATGGC 58.533 47.619 0.00 0.00 43.02 4.40
36 37 0.817013 TCCGCAAGAATCAAATGGCC 59.183 50.000 0.00 0.00 43.02 5.36
37 38 0.819582 CCGCAAGAATCAAATGGCCT 59.180 50.000 3.32 0.00 43.02 5.19
38 39 2.023673 CCGCAAGAATCAAATGGCCTA 58.976 47.619 3.32 0.00 43.02 3.93
39 40 2.033801 CCGCAAGAATCAAATGGCCTAG 59.966 50.000 3.32 0.00 43.02 3.02
40 41 2.033801 CGCAAGAATCAAATGGCCTAGG 59.966 50.000 3.67 3.67 43.02 3.02
41 42 3.290710 GCAAGAATCAAATGGCCTAGGA 58.709 45.455 14.75 0.00 0.00 2.94
42 43 3.701040 GCAAGAATCAAATGGCCTAGGAA 59.299 43.478 14.75 0.00 0.00 3.36
43 44 4.343239 GCAAGAATCAAATGGCCTAGGAAT 59.657 41.667 14.75 1.71 0.00 3.01
44 45 5.738208 GCAAGAATCAAATGGCCTAGGAATG 60.738 44.000 14.75 3.19 0.00 2.67
45 46 5.393068 AGAATCAAATGGCCTAGGAATGA 57.607 39.130 14.75 8.78 0.00 2.57
46 47 5.961897 AGAATCAAATGGCCTAGGAATGAT 58.038 37.500 14.75 10.69 0.00 2.45
47 48 5.773680 AGAATCAAATGGCCTAGGAATGATG 59.226 40.000 14.75 5.46 0.00 3.07
48 49 4.524802 TCAAATGGCCTAGGAATGATGT 57.475 40.909 14.75 0.00 0.00 3.06
49 50 4.870636 TCAAATGGCCTAGGAATGATGTT 58.129 39.130 14.75 0.00 0.00 2.71
50 51 5.271598 TCAAATGGCCTAGGAATGATGTTT 58.728 37.500 14.75 0.19 0.00 2.83
51 52 6.430864 TCAAATGGCCTAGGAATGATGTTTA 58.569 36.000 14.75 0.00 0.00 2.01
52 53 6.321181 TCAAATGGCCTAGGAATGATGTTTAC 59.679 38.462 14.75 0.00 0.00 2.01
53 54 4.853468 TGGCCTAGGAATGATGTTTACA 57.147 40.909 14.75 0.00 0.00 2.41
54 55 4.780815 TGGCCTAGGAATGATGTTTACAG 58.219 43.478 14.75 0.00 0.00 2.74
55 56 4.473196 TGGCCTAGGAATGATGTTTACAGA 59.527 41.667 14.75 0.00 0.00 3.41
56 57 4.816925 GGCCTAGGAATGATGTTTACAGAC 59.183 45.833 14.75 0.00 0.00 3.51
57 58 5.396884 GGCCTAGGAATGATGTTTACAGACT 60.397 44.000 14.75 0.00 0.00 3.24
58 59 6.183360 GGCCTAGGAATGATGTTTACAGACTA 60.183 42.308 14.75 0.00 0.00 2.59
59 60 6.926272 GCCTAGGAATGATGTTTACAGACTAG 59.074 42.308 14.75 0.00 0.00 2.57
60 61 7.201920 GCCTAGGAATGATGTTTACAGACTAGA 60.202 40.741 14.75 0.00 0.00 2.43
61 62 8.356657 CCTAGGAATGATGTTTACAGACTAGAG 58.643 40.741 1.05 0.00 0.00 2.43
62 63 7.726033 AGGAATGATGTTTACAGACTAGAGT 57.274 36.000 0.00 0.00 0.00 3.24
63 64 7.551585 AGGAATGATGTTTACAGACTAGAGTG 58.448 38.462 0.00 0.00 0.00 3.51
64 65 7.179338 AGGAATGATGTTTACAGACTAGAGTGT 59.821 37.037 0.00 1.61 0.00 3.55
65 66 7.819900 GGAATGATGTTTACAGACTAGAGTGTT 59.180 37.037 0.00 0.00 0.00 3.32
66 67 9.209175 GAATGATGTTTACAGACTAGAGTGTTT 57.791 33.333 0.00 0.00 0.00 2.83
71 72 8.738199 TGTTTACAGACTAGAGTGTTTATTCG 57.262 34.615 0.00 0.00 0.00 3.34
72 73 8.570488 TGTTTACAGACTAGAGTGTTTATTCGA 58.430 33.333 0.00 0.00 0.00 3.71
73 74 9.570488 GTTTACAGACTAGAGTGTTTATTCGAT 57.430 33.333 0.00 0.00 0.00 3.59
74 75 9.784680 TTTACAGACTAGAGTGTTTATTCGATC 57.215 33.333 0.00 0.00 0.00 3.69
75 76 7.633193 ACAGACTAGAGTGTTTATTCGATCT 57.367 36.000 0.00 0.00 0.00 2.75
76 77 7.699566 ACAGACTAGAGTGTTTATTCGATCTC 58.300 38.462 0.00 0.00 0.00 2.75
77 78 7.337184 ACAGACTAGAGTGTTTATTCGATCTCA 59.663 37.037 0.00 0.00 0.00 3.27
78 79 8.349245 CAGACTAGAGTGTTTATTCGATCTCAT 58.651 37.037 0.00 0.00 0.00 2.90
79 80 9.562408 AGACTAGAGTGTTTATTCGATCTCATA 57.438 33.333 0.00 0.00 0.00 2.15
84 85 8.855110 AGAGTGTTTATTCGATCTCATATCTGT 58.145 33.333 0.00 0.00 0.00 3.41
85 86 9.469807 GAGTGTTTATTCGATCTCATATCTGTT 57.530 33.333 0.00 0.00 0.00 3.16
86 87 9.823647 AGTGTTTATTCGATCTCATATCTGTTT 57.176 29.630 0.00 0.00 0.00 2.83
92 93 8.755696 ATTCGATCTCATATCTGTTTCTAAGC 57.244 34.615 0.00 0.00 0.00 3.09
93 94 7.277174 TCGATCTCATATCTGTTTCTAAGCA 57.723 36.000 0.00 0.00 0.00 3.91
94 95 7.716612 TCGATCTCATATCTGTTTCTAAGCAA 58.283 34.615 0.00 0.00 0.00 3.91
95 96 7.864882 TCGATCTCATATCTGTTTCTAAGCAAG 59.135 37.037 0.00 0.00 0.00 4.01
96 97 7.359097 CGATCTCATATCTGTTTCTAAGCAAGC 60.359 40.741 0.00 0.00 0.00 4.01
97 98 6.051717 TCTCATATCTGTTTCTAAGCAAGCC 58.948 40.000 0.00 0.00 0.00 4.35
98 99 5.126067 TCATATCTGTTTCTAAGCAAGCCC 58.874 41.667 0.00 0.00 0.00 5.19
99 100 2.200373 TCTGTTTCTAAGCAAGCCCC 57.800 50.000 0.00 0.00 0.00 5.80
100 101 1.705186 TCTGTTTCTAAGCAAGCCCCT 59.295 47.619 0.00 0.00 0.00 4.79
101 102 1.815003 CTGTTTCTAAGCAAGCCCCTG 59.185 52.381 0.00 0.00 0.00 4.45
102 103 1.177401 GTTTCTAAGCAAGCCCCTGG 58.823 55.000 0.00 0.00 0.00 4.45
103 104 1.072266 TTTCTAAGCAAGCCCCTGGA 58.928 50.000 0.00 0.00 0.00 3.86
104 105 1.298953 TTCTAAGCAAGCCCCTGGAT 58.701 50.000 0.00 0.00 0.00 3.41
105 106 0.548031 TCTAAGCAAGCCCCTGGATG 59.452 55.000 0.00 0.00 0.00 3.51
106 107 0.548031 CTAAGCAAGCCCCTGGATGA 59.452 55.000 0.00 0.00 0.00 2.92
107 108 1.144503 CTAAGCAAGCCCCTGGATGAT 59.855 52.381 0.00 0.00 0.00 2.45
108 109 1.225373 AAGCAAGCCCCTGGATGATA 58.775 50.000 0.00 0.00 0.00 2.15
109 110 1.225373 AGCAAGCCCCTGGATGATAA 58.775 50.000 0.00 0.00 0.00 1.75
110 111 1.144503 AGCAAGCCCCTGGATGATAAG 59.855 52.381 0.00 0.00 0.00 1.73
111 112 1.820877 GCAAGCCCCTGGATGATAAGG 60.821 57.143 0.00 0.00 0.00 2.69
116 117 2.283145 CCCTGGATGATAAGGGCTTG 57.717 55.000 0.00 0.00 46.63 4.01
117 118 1.776667 CCCTGGATGATAAGGGCTTGA 59.223 52.381 0.00 0.00 46.63 3.02
118 119 2.377869 CCCTGGATGATAAGGGCTTGAT 59.622 50.000 0.00 0.00 46.63 2.57
119 120 3.588842 CCCTGGATGATAAGGGCTTGATA 59.411 47.826 0.00 0.00 46.63 2.15
120 121 4.043310 CCCTGGATGATAAGGGCTTGATAA 59.957 45.833 0.00 0.00 46.63 1.75
121 122 5.251764 CCTGGATGATAAGGGCTTGATAAG 58.748 45.833 0.00 0.00 0.00 1.73
122 123 5.246981 TGGATGATAAGGGCTTGATAAGG 57.753 43.478 0.00 0.00 0.00 2.69
123 124 4.665009 TGGATGATAAGGGCTTGATAAGGT 59.335 41.667 0.00 0.00 0.00 3.50
124 125 5.006386 GGATGATAAGGGCTTGATAAGGTG 58.994 45.833 0.00 0.00 0.00 4.00
125 126 5.221925 GGATGATAAGGGCTTGATAAGGTGA 60.222 44.000 0.00 0.00 0.00 4.02
126 127 5.708736 TGATAAGGGCTTGATAAGGTGAA 57.291 39.130 0.00 0.00 0.00 3.18
127 128 6.266131 TGATAAGGGCTTGATAAGGTGAAT 57.734 37.500 0.00 0.00 0.00 2.57
128 129 6.672593 TGATAAGGGCTTGATAAGGTGAATT 58.327 36.000 0.00 0.00 0.00 2.17
129 130 7.125391 TGATAAGGGCTTGATAAGGTGAATTT 58.875 34.615 0.00 0.00 0.00 1.82
130 131 5.665916 AAGGGCTTGATAAGGTGAATTTG 57.334 39.130 0.00 0.00 0.00 2.32
131 132 3.448660 AGGGCTTGATAAGGTGAATTTGC 59.551 43.478 0.00 0.00 0.00 3.68
132 133 3.195396 GGGCTTGATAAGGTGAATTTGCA 59.805 43.478 0.00 0.00 0.00 4.08
133 134 4.322650 GGGCTTGATAAGGTGAATTTGCAA 60.323 41.667 0.00 0.00 0.00 4.08
134 135 5.422145 GGCTTGATAAGGTGAATTTGCAAT 58.578 37.500 0.00 0.00 0.00 3.56
135 136 6.406849 GGGCTTGATAAGGTGAATTTGCAATA 60.407 38.462 0.00 0.00 0.00 1.90
136 137 6.476706 GGCTTGATAAGGTGAATTTGCAATAC 59.523 38.462 0.00 0.00 0.00 1.89
137 138 7.035004 GCTTGATAAGGTGAATTTGCAATACA 58.965 34.615 0.00 0.00 0.00 2.29
138 139 7.707893 GCTTGATAAGGTGAATTTGCAATACAT 59.292 33.333 0.00 0.00 0.00 2.29
144 145 7.701539 AGGTGAATTTGCAATACATAAGACA 57.298 32.000 0.00 0.00 0.00 3.41
145 146 8.297470 AGGTGAATTTGCAATACATAAGACAT 57.703 30.769 0.00 0.00 0.00 3.06
146 147 8.192774 AGGTGAATTTGCAATACATAAGACATG 58.807 33.333 0.00 0.00 0.00 3.21
147 148 8.190122 GGTGAATTTGCAATACATAAGACATGA 58.810 33.333 0.00 0.00 0.00 3.07
148 149 9.740239 GTGAATTTGCAATACATAAGACATGAT 57.260 29.630 0.00 0.00 0.00 2.45
149 150 9.738832 TGAATTTGCAATACATAAGACATGATG 57.261 29.630 0.00 0.00 0.00 3.07
150 151 9.740239 GAATTTGCAATACATAAGACATGATGT 57.260 29.630 0.00 0.00 39.57 3.06
151 152 9.524106 AATTTGCAATACATAAGACATGATGTG 57.476 29.630 1.23 0.00 36.92 3.21
152 153 6.622833 TGCAATACATAAGACATGATGTGG 57.377 37.500 1.23 0.00 36.92 4.17
153 154 5.008911 TGCAATACATAAGACATGATGTGGC 59.991 40.000 1.23 5.72 36.92 5.01
154 155 5.682869 CAATACATAAGACATGATGTGGCG 58.317 41.667 1.23 0.00 42.34 5.69
155 156 1.942657 ACATAAGACATGATGTGGCGC 59.057 47.619 1.23 0.00 42.34 6.53
156 157 2.216046 CATAAGACATGATGTGGCGCT 58.784 47.619 7.64 0.00 42.34 5.92
157 158 2.401583 TAAGACATGATGTGGCGCTT 57.598 45.000 7.64 2.54 42.34 4.68
158 159 0.806868 AAGACATGATGTGGCGCTTG 59.193 50.000 7.64 0.00 42.34 4.01
159 160 1.226491 GACATGATGTGGCGCTTGC 60.226 57.895 7.64 0.00 38.11 4.01
160 161 2.277692 CATGATGTGGCGCTTGCG 60.278 61.111 7.64 10.90 40.46 4.85
161 162 2.747460 ATGATGTGGCGCTTGCGT 60.747 55.556 16.38 0.00 40.46 5.24
162 163 2.334946 ATGATGTGGCGCTTGCGTT 61.335 52.632 16.38 0.00 40.46 4.84
163 164 1.865788 ATGATGTGGCGCTTGCGTTT 61.866 50.000 16.38 0.00 40.46 3.60
164 165 2.050168 ATGTGGCGCTTGCGTTTG 60.050 55.556 16.38 0.00 40.46 2.93
165 166 2.731587 GATGTGGCGCTTGCGTTTGT 62.732 55.000 16.38 0.00 40.46 2.83
166 167 1.511318 ATGTGGCGCTTGCGTTTGTA 61.511 50.000 16.38 0.93 40.46 2.41
167 168 1.724581 GTGGCGCTTGCGTTTGTAC 60.725 57.895 16.38 5.44 40.46 2.90
168 169 1.890041 TGGCGCTTGCGTTTGTACT 60.890 52.632 16.38 0.00 40.46 2.73
169 170 1.440353 GGCGCTTGCGTTTGTACTG 60.440 57.895 16.38 0.00 40.46 2.74
170 171 1.278637 GCGCTTGCGTTTGTACTGT 59.721 52.632 16.38 0.00 0.00 3.55
171 172 0.991770 GCGCTTGCGTTTGTACTGTG 60.992 55.000 16.38 0.00 0.00 3.66
172 173 0.303493 CGCTTGCGTTTGTACTGTGT 59.697 50.000 6.86 0.00 0.00 3.72
173 174 1.267832 CGCTTGCGTTTGTACTGTGTT 60.268 47.619 6.86 0.00 0.00 3.32
174 175 2.033577 CGCTTGCGTTTGTACTGTGTTA 60.034 45.455 6.86 0.00 0.00 2.41
175 176 3.544440 CGCTTGCGTTTGTACTGTGTTAA 60.544 43.478 6.86 0.00 0.00 2.01
176 177 4.344448 GCTTGCGTTTGTACTGTGTTAAA 58.656 39.130 0.00 0.00 0.00 1.52
177 178 4.794246 GCTTGCGTTTGTACTGTGTTAAAA 59.206 37.500 0.00 0.00 0.00 1.52
178 179 5.286558 GCTTGCGTTTGTACTGTGTTAAAAA 59.713 36.000 0.00 0.00 0.00 1.94
230 231 3.289797 TTGTTCCAACAAGGTGGCA 57.710 47.368 0.00 0.00 43.45 4.92
231 232 1.110442 TTGTTCCAACAAGGTGGCAG 58.890 50.000 0.00 0.00 43.45 4.85
232 233 0.754957 TGTTCCAACAAGGTGGCAGG 60.755 55.000 0.00 0.00 38.68 4.85
233 234 0.467290 GTTCCAACAAGGTGGCAGGA 60.467 55.000 0.00 0.00 38.68 3.86
234 235 0.178992 TTCCAACAAGGTGGCAGGAG 60.179 55.000 0.00 0.00 38.68 3.69
235 236 2.270986 CCAACAAGGTGGCAGGAGC 61.271 63.158 0.00 0.00 41.10 4.70
236 237 2.281761 AACAAGGTGGCAGGAGCG 60.282 61.111 0.00 0.00 43.41 5.03
237 238 2.818169 AACAAGGTGGCAGGAGCGA 61.818 57.895 0.00 0.00 43.41 4.93
238 239 2.032528 CAAGGTGGCAGGAGCGAA 59.967 61.111 0.00 0.00 43.41 4.70
239 240 2.037136 CAAGGTGGCAGGAGCGAAG 61.037 63.158 0.00 0.00 43.41 3.79
240 241 3.259633 AAGGTGGCAGGAGCGAAGG 62.260 63.158 0.00 0.00 43.41 3.46
241 242 4.785453 GGTGGCAGGAGCGAAGGG 62.785 72.222 0.00 0.00 43.41 3.95
242 243 4.785453 GTGGCAGGAGCGAAGGGG 62.785 72.222 0.00 0.00 43.41 4.79
244 245 3.717294 GGCAGGAGCGAAGGGGAA 61.717 66.667 0.00 0.00 43.41 3.97
245 246 2.124942 GCAGGAGCGAAGGGGAAG 60.125 66.667 0.00 0.00 0.00 3.46
246 247 2.586792 CAGGAGCGAAGGGGAAGG 59.413 66.667 0.00 0.00 0.00 3.46
247 248 2.689034 AGGAGCGAAGGGGAAGGG 60.689 66.667 0.00 0.00 0.00 3.95
248 249 4.491409 GGAGCGAAGGGGAAGGGC 62.491 72.222 0.00 0.00 0.00 5.19
249 250 3.717294 GAGCGAAGGGGAAGGGCA 61.717 66.667 0.00 0.00 0.00 5.36
250 251 3.256960 AGCGAAGGGGAAGGGCAA 61.257 61.111 0.00 0.00 0.00 4.52
251 252 2.043953 GCGAAGGGGAAGGGCAAT 60.044 61.111 0.00 0.00 0.00 3.56
252 253 1.226262 GCGAAGGGGAAGGGCAATA 59.774 57.895 0.00 0.00 0.00 1.90
253 254 0.178990 GCGAAGGGGAAGGGCAATAT 60.179 55.000 0.00 0.00 0.00 1.28
254 255 1.754201 GCGAAGGGGAAGGGCAATATT 60.754 52.381 0.00 0.00 0.00 1.28
255 256 1.956477 CGAAGGGGAAGGGCAATATTG 59.044 52.381 11.27 11.27 0.00 1.90
256 257 2.319844 GAAGGGGAAGGGCAATATTGG 58.680 52.381 17.02 0.00 0.00 3.16
257 258 0.562674 AGGGGAAGGGCAATATTGGG 59.437 55.000 17.02 0.00 0.00 4.12
258 259 0.560688 GGGGAAGGGCAATATTGGGA 59.439 55.000 17.02 0.00 0.00 4.37
259 260 1.704641 GGGAAGGGCAATATTGGGAC 58.295 55.000 17.02 0.53 0.00 4.46
260 261 1.318576 GGAAGGGCAATATTGGGACG 58.681 55.000 17.02 0.00 0.00 4.79
261 262 1.318576 GAAGGGCAATATTGGGACGG 58.681 55.000 17.02 0.00 0.00 4.79
262 263 0.923358 AAGGGCAATATTGGGACGGA 59.077 50.000 17.02 0.00 0.00 4.69
263 264 0.474184 AGGGCAATATTGGGACGGAG 59.526 55.000 17.02 0.00 0.00 4.63
264 265 0.537371 GGGCAATATTGGGACGGAGG 60.537 60.000 17.02 0.00 0.00 4.30
265 266 1.172812 GGCAATATTGGGACGGAGGC 61.173 60.000 17.02 0.00 0.00 4.70
266 267 0.465460 GCAATATTGGGACGGAGGCA 60.465 55.000 17.02 0.00 0.00 4.75
267 268 1.597742 CAATATTGGGACGGAGGCAG 58.402 55.000 7.62 0.00 0.00 4.85
268 269 1.134098 CAATATTGGGACGGAGGCAGT 60.134 52.381 7.62 0.00 0.00 4.40
269 270 2.097110 ATATTGGGACGGAGGCAGTA 57.903 50.000 0.00 0.00 0.00 2.74
270 271 2.097110 TATTGGGACGGAGGCAGTAT 57.903 50.000 0.00 0.00 0.00 2.12
271 272 0.469917 ATTGGGACGGAGGCAGTATG 59.530 55.000 0.00 0.00 40.87 2.39
272 273 0.616395 TTGGGACGGAGGCAGTATGA 60.616 55.000 0.00 0.00 39.69 2.15
273 274 0.398522 TGGGACGGAGGCAGTATGAT 60.399 55.000 0.00 0.00 39.69 2.45
274 275 0.759346 GGGACGGAGGCAGTATGATT 59.241 55.000 0.00 0.00 39.69 2.57
275 276 1.141053 GGGACGGAGGCAGTATGATTT 59.859 52.381 0.00 0.00 39.69 2.17
276 277 2.367567 GGGACGGAGGCAGTATGATTTA 59.632 50.000 0.00 0.00 39.69 1.40
277 278 3.008049 GGGACGGAGGCAGTATGATTTAT 59.992 47.826 0.00 0.00 39.69 1.40
278 279 4.505039 GGGACGGAGGCAGTATGATTTATT 60.505 45.833 0.00 0.00 39.69 1.40
279 280 4.691216 GGACGGAGGCAGTATGATTTATTC 59.309 45.833 0.00 0.00 39.69 1.75
280 281 4.642429 ACGGAGGCAGTATGATTTATTCC 58.358 43.478 0.00 0.00 39.69 3.01
281 282 4.003648 CGGAGGCAGTATGATTTATTCCC 58.996 47.826 0.00 0.00 39.69 3.97
282 283 4.263068 CGGAGGCAGTATGATTTATTCCCT 60.263 45.833 0.00 0.00 39.69 4.20
283 284 5.046591 CGGAGGCAGTATGATTTATTCCCTA 60.047 44.000 0.00 0.00 39.69 3.53
284 285 6.410540 GGAGGCAGTATGATTTATTCCCTAG 58.589 44.000 0.00 0.00 39.69 3.02
285 286 6.013293 GGAGGCAGTATGATTTATTCCCTAGT 60.013 42.308 0.00 0.00 39.69 2.57
286 287 7.394144 AGGCAGTATGATTTATTCCCTAGTT 57.606 36.000 0.00 0.00 39.69 2.24
287 288 7.227156 AGGCAGTATGATTTATTCCCTAGTTG 58.773 38.462 0.00 0.00 39.69 3.16
288 289 6.998673 GGCAGTATGATTTATTCCCTAGTTGT 59.001 38.462 0.00 0.00 39.69 3.32
289 290 8.154856 GGCAGTATGATTTATTCCCTAGTTGTA 58.845 37.037 0.00 0.00 39.69 2.41
290 291 8.989980 GCAGTATGATTTATTCCCTAGTTGTAC 58.010 37.037 0.00 0.00 39.69 2.90
299 300 9.609346 TTTATTCCCTAGTTGTACTAAATCAGC 57.391 33.333 0.00 0.00 29.00 4.26
300 301 6.869206 TTCCCTAGTTGTACTAAATCAGCT 57.131 37.500 0.00 0.00 29.00 4.24
301 302 7.966339 TTCCCTAGTTGTACTAAATCAGCTA 57.034 36.000 0.00 0.00 29.00 3.32
302 303 7.344095 TCCCTAGTTGTACTAAATCAGCTAC 57.656 40.000 0.00 0.00 29.00 3.58
303 304 6.039047 TCCCTAGTTGTACTAAATCAGCTACG 59.961 42.308 0.00 0.00 29.00 3.51
304 305 5.686397 CCTAGTTGTACTAAATCAGCTACGC 59.314 44.000 0.00 0.00 29.00 4.42
305 306 5.326200 AGTTGTACTAAATCAGCTACGCT 57.674 39.130 0.00 0.00 40.77 5.07
306 307 5.721232 AGTTGTACTAAATCAGCTACGCTT 58.279 37.500 0.00 0.00 36.40 4.68
307 308 6.860080 AGTTGTACTAAATCAGCTACGCTTA 58.140 36.000 0.00 0.00 36.40 3.09
308 309 7.490000 AGTTGTACTAAATCAGCTACGCTTAT 58.510 34.615 0.00 0.00 36.40 1.73
309 310 7.980099 AGTTGTACTAAATCAGCTACGCTTATT 59.020 33.333 0.00 0.00 36.40 1.40
310 311 8.601476 GTTGTACTAAATCAGCTACGCTTATTT 58.399 33.333 11.35 11.35 42.58 1.40
311 312 8.712285 TGTACTAAATCAGCTACGCTTATTTT 57.288 30.769 11.74 3.95 38.72 1.82
312 313 8.600625 TGTACTAAATCAGCTACGCTTATTTTG 58.399 33.333 11.74 11.97 38.72 2.44
313 314 7.016361 ACTAAATCAGCTACGCTTATTTTGG 57.984 36.000 11.74 8.79 38.72 3.28
314 315 4.900635 AATCAGCTACGCTTATTTTGGG 57.099 40.909 0.00 0.00 36.40 4.12
315 316 3.620427 TCAGCTACGCTTATTTTGGGA 57.380 42.857 0.00 0.00 36.40 4.37
316 317 3.267483 TCAGCTACGCTTATTTTGGGAC 58.733 45.455 0.00 0.00 36.40 4.46
317 318 3.055385 TCAGCTACGCTTATTTTGGGACT 60.055 43.478 0.00 0.00 36.40 3.85
318 319 3.063997 CAGCTACGCTTATTTTGGGACTG 59.936 47.826 0.00 0.00 36.40 3.51
319 320 3.055385 AGCTACGCTTATTTTGGGACTGA 60.055 43.478 0.00 0.00 33.89 3.41
320 321 3.687698 GCTACGCTTATTTTGGGACTGAA 59.312 43.478 0.00 0.00 0.00 3.02
321 322 4.201822 GCTACGCTTATTTTGGGACTGAAG 60.202 45.833 0.00 0.00 0.00 3.02
322 323 3.751518 ACGCTTATTTTGGGACTGAAGT 58.248 40.909 0.00 0.00 0.00 3.01
323 324 4.901868 ACGCTTATTTTGGGACTGAAGTA 58.098 39.130 0.00 0.00 0.00 2.24
324 325 4.935808 ACGCTTATTTTGGGACTGAAGTAG 59.064 41.667 0.00 0.00 0.00 2.57
325 326 4.935808 CGCTTATTTTGGGACTGAAGTAGT 59.064 41.667 0.00 0.00 44.02 2.73
326 327 6.103997 CGCTTATTTTGGGACTGAAGTAGTA 58.896 40.000 0.00 0.00 40.53 1.82
327 328 6.761714 CGCTTATTTTGGGACTGAAGTAGTAT 59.238 38.462 0.00 0.00 40.53 2.12
328 329 7.254455 CGCTTATTTTGGGACTGAAGTAGTATG 60.254 40.741 0.00 0.00 40.53 2.39
329 330 7.769044 GCTTATTTTGGGACTGAAGTAGTATGA 59.231 37.037 0.00 0.00 40.53 2.15
330 331 9.838339 CTTATTTTGGGACTGAAGTAGTATGAT 57.162 33.333 0.00 0.00 40.53 2.45
335 336 9.613428 TTTGGGACTGAAGTAGTATGATTTATG 57.387 33.333 0.00 0.00 40.53 1.90
336 337 8.319057 TGGGACTGAAGTAGTATGATTTATGT 57.681 34.615 0.00 0.00 40.53 2.29
337 338 8.768397 TGGGACTGAAGTAGTATGATTTATGTT 58.232 33.333 0.00 0.00 40.53 2.71
338 339 9.262358 GGGACTGAAGTAGTATGATTTATGTTC 57.738 37.037 0.00 0.00 40.53 3.18
354 355 8.970691 ATTTATGTTCTGTACAAGATTGTTGC 57.029 30.769 3.14 0.00 42.35 4.17
355 356 4.466567 TGTTCTGTACAAGATTGTTGCG 57.533 40.909 3.14 0.00 42.35 4.85
356 357 3.874543 TGTTCTGTACAAGATTGTTGCGT 59.125 39.130 3.14 0.00 42.35 5.24
357 358 4.211389 GTTCTGTACAAGATTGTTGCGTG 58.789 43.478 3.14 0.00 42.35 5.34
358 359 2.223144 TCTGTACAAGATTGTTGCGTGC 59.777 45.455 3.14 0.00 42.35 5.34
359 360 2.217750 TGTACAAGATTGTTGCGTGCT 58.782 42.857 3.14 0.00 42.35 4.40
360 361 2.032117 TGTACAAGATTGTTGCGTGCTG 60.032 45.455 3.14 0.00 42.35 4.41
361 362 0.318107 ACAAGATTGTTGCGTGCTGC 60.318 50.000 0.00 0.00 38.47 5.25
362 363 0.039798 CAAGATTGTTGCGTGCTGCT 60.040 50.000 0.00 0.00 46.63 4.24
363 364 0.239347 AAGATTGTTGCGTGCTGCTC 59.761 50.000 0.00 0.00 46.63 4.26
364 365 0.886043 AGATTGTTGCGTGCTGCTCA 60.886 50.000 0.00 0.00 46.63 4.26
365 366 0.040157 GATTGTTGCGTGCTGCTCAA 60.040 50.000 0.00 8.47 46.63 3.02
366 367 0.385029 ATTGTTGCGTGCTGCTCAAA 59.615 45.000 0.00 0.00 46.63 2.69
367 368 0.385029 TTGTTGCGTGCTGCTCAAAT 59.615 45.000 0.00 0.00 46.63 2.32
368 369 0.385029 TGTTGCGTGCTGCTCAAATT 59.615 45.000 0.00 0.00 46.63 1.82
369 370 1.202394 TGTTGCGTGCTGCTCAAATTT 60.202 42.857 0.00 0.00 46.63 1.82
370 371 1.190763 GTTGCGTGCTGCTCAAATTTG 59.809 47.619 12.15 12.15 46.63 2.32
371 372 0.385029 TGCGTGCTGCTCAAATTTGT 59.615 45.000 17.47 0.00 46.63 2.83
372 373 1.202394 TGCGTGCTGCTCAAATTTGTT 60.202 42.857 17.47 0.00 46.63 2.83
373 374 1.860326 GCGTGCTGCTCAAATTTGTTT 59.140 42.857 17.47 0.00 41.73 2.83
374 375 2.284952 GCGTGCTGCTCAAATTTGTTTT 59.715 40.909 17.47 0.00 41.73 2.43
375 376 3.489047 GCGTGCTGCTCAAATTTGTTTTA 59.511 39.130 17.47 0.00 41.73 1.52
376 377 4.606012 GCGTGCTGCTCAAATTTGTTTTAC 60.606 41.667 17.47 9.59 41.73 2.01
377 378 4.085107 CGTGCTGCTCAAATTTGTTTTACC 60.085 41.667 17.47 4.73 0.00 2.85
378 379 5.049828 GTGCTGCTCAAATTTGTTTTACCT 58.950 37.500 17.47 0.00 0.00 3.08
379 380 5.523552 GTGCTGCTCAAATTTGTTTTACCTT 59.476 36.000 17.47 0.00 0.00 3.50
380 381 5.752955 TGCTGCTCAAATTTGTTTTACCTTC 59.247 36.000 17.47 1.58 0.00 3.46
381 382 5.985530 GCTGCTCAAATTTGTTTTACCTTCT 59.014 36.000 17.47 0.00 0.00 2.85
382 383 6.479990 GCTGCTCAAATTTGTTTTACCTTCTT 59.520 34.615 17.47 0.00 0.00 2.52
383 384 7.651704 GCTGCTCAAATTTGTTTTACCTTCTTA 59.348 33.333 17.47 0.00 0.00 2.10
384 385 8.865590 TGCTCAAATTTGTTTTACCTTCTTAC 57.134 30.769 17.47 0.00 0.00 2.34
385 386 8.691797 TGCTCAAATTTGTTTTACCTTCTTACT 58.308 29.630 17.47 0.00 0.00 2.24
386 387 9.181805 GCTCAAATTTGTTTTACCTTCTTACTC 57.818 33.333 17.47 0.00 0.00 2.59
393 394 9.760077 TTTGTTTTACCTTCTTACTCTACTGAG 57.240 33.333 0.00 0.00 45.43 3.35
406 407 4.761975 CTCTACTGAGTTACTCTCTCCGT 58.238 47.826 13.86 5.71 43.13 4.69
407 408 4.757594 TCTACTGAGTTACTCTCTCCGTC 58.242 47.826 13.86 0.00 43.13 4.79
408 409 2.713877 ACTGAGTTACTCTCTCCGTCC 58.286 52.381 13.86 0.00 43.13 4.79
409 410 1.666700 CTGAGTTACTCTCTCCGTCCG 59.333 57.143 13.86 0.00 43.13 4.79
410 411 1.015868 GAGTTACTCTCTCCGTCCGG 58.984 60.000 4.94 0.00 39.86 5.14
411 412 0.617413 AGTTACTCTCTCCGTCCGGA 59.383 55.000 0.00 0.00 42.90 5.14
412 413 1.004044 AGTTACTCTCTCCGTCCGGAA 59.996 52.381 5.23 0.00 44.66 4.30
413 414 1.815003 GTTACTCTCTCCGTCCGGAAA 59.185 52.381 5.23 0.00 44.66 3.13
414 415 2.426381 GTTACTCTCTCCGTCCGGAAAT 59.574 50.000 5.23 0.00 44.66 2.17
415 416 2.431954 ACTCTCTCCGTCCGGAAATA 57.568 50.000 5.23 0.00 44.66 1.40
416 417 2.022934 ACTCTCTCCGTCCGGAAATAC 58.977 52.381 5.23 0.00 44.66 1.89
417 418 2.299521 CTCTCTCCGTCCGGAAATACT 58.700 52.381 5.23 0.00 44.66 2.12
418 419 2.688958 CTCTCTCCGTCCGGAAATACTT 59.311 50.000 5.23 0.00 44.66 2.24
419 420 3.881688 CTCTCTCCGTCCGGAAATACTTA 59.118 47.826 5.23 0.00 44.66 2.24
420 421 4.467769 TCTCTCCGTCCGGAAATACTTAT 58.532 43.478 5.23 0.00 44.66 1.73
421 422 4.518211 TCTCTCCGTCCGGAAATACTTATC 59.482 45.833 5.23 0.00 44.66 1.75
422 423 4.209538 TCTCCGTCCGGAAATACTTATCA 58.790 43.478 5.23 0.00 44.66 2.15
423 424 4.831155 TCTCCGTCCGGAAATACTTATCAT 59.169 41.667 5.23 0.00 44.66 2.45
424 425 5.048224 TCTCCGTCCGGAAATACTTATCATC 60.048 44.000 5.23 0.00 44.66 2.92
425 426 4.585581 TCCGTCCGGAAATACTTATCATCA 59.414 41.667 5.23 0.00 42.05 3.07
426 427 5.069383 TCCGTCCGGAAATACTTATCATCAA 59.931 40.000 5.23 0.00 42.05 2.57
427 428 5.756347 CCGTCCGGAAATACTTATCATCAAA 59.244 40.000 5.23 0.00 37.50 2.69
428 429 6.259167 CCGTCCGGAAATACTTATCATCAAAA 59.741 38.462 5.23 0.00 37.50 2.44
429 430 7.041372 CCGTCCGGAAATACTTATCATCAAAAT 60.041 37.037 5.23 0.00 37.50 1.82
430 431 7.798516 CGTCCGGAAATACTTATCATCAAAATG 59.201 37.037 5.23 0.00 0.00 2.32
431 432 8.836413 GTCCGGAAATACTTATCATCAAAATGA 58.164 33.333 5.23 0.00 45.73 2.57
432 433 9.402320 TCCGGAAATACTTATCATCAAAATGAA 57.598 29.630 0.00 0.00 44.85 2.57
509 510 8.700722 TCCATTTTGATGACAAATATTTTCGG 57.299 30.769 0.00 0.00 43.99 4.30
510 511 8.526978 TCCATTTTGATGACAAATATTTTCGGA 58.473 29.630 0.00 0.00 43.99 4.55
511 512 8.594687 CCATTTTGATGACAAATATTTTCGGAC 58.405 33.333 0.00 0.00 43.99 4.79
512 513 7.789341 TTTTGATGACAAATATTTTCGGACG 57.211 32.000 0.00 0.00 43.99 4.79
513 514 5.478233 TGATGACAAATATTTTCGGACGG 57.522 39.130 0.00 0.00 0.00 4.79
514 515 5.179533 TGATGACAAATATTTTCGGACGGA 58.820 37.500 0.00 0.00 0.00 4.69
515 516 5.644206 TGATGACAAATATTTTCGGACGGAA 59.356 36.000 0.00 0.00 0.00 4.30
516 517 5.539582 TGACAAATATTTTCGGACGGAAG 57.460 39.130 0.00 0.00 35.70 3.46
517 518 4.393680 TGACAAATATTTTCGGACGGAAGG 59.606 41.667 0.00 0.00 35.70 3.46
518 519 4.581868 ACAAATATTTTCGGACGGAAGGA 58.418 39.130 0.00 0.00 35.70 3.36
519 520 4.634443 ACAAATATTTTCGGACGGAAGGAG 59.366 41.667 0.00 0.00 35.70 3.69
520 521 4.482952 AATATTTTCGGACGGAAGGAGT 57.517 40.909 0.00 0.00 35.70 3.85
521 522 5.603170 AATATTTTCGGACGGAAGGAGTA 57.397 39.130 0.00 0.00 35.70 2.59
522 523 5.803237 ATATTTTCGGACGGAAGGAGTAT 57.197 39.130 0.00 0.00 35.70 2.12
523 524 6.906157 ATATTTTCGGACGGAAGGAGTATA 57.094 37.500 0.00 0.00 35.70 1.47
524 525 5.803237 ATTTTCGGACGGAAGGAGTATAT 57.197 39.130 0.00 0.00 35.70 0.86
525 526 5.603170 TTTTCGGACGGAAGGAGTATATT 57.397 39.130 0.00 0.00 35.70 1.28
526 527 4.843220 TTCGGACGGAAGGAGTATATTC 57.157 45.455 0.00 0.00 0.00 1.75
533 534 7.162082 GGACGGAAGGAGTATATTCATTCATT 58.838 38.462 19.92 9.10 39.07 2.57
549 550 9.994432 ATTCATTCATTCATCTTTTACGAGTTC 57.006 29.630 0.00 0.00 0.00 3.01
551 552 6.403333 TTCATTCATCTTTTACGAGTTCCG 57.597 37.500 0.00 0.00 45.44 4.30
586 587 3.542825 CGCAGCGAAAGGTCAAAAA 57.457 47.368 9.98 0.00 41.81 1.94
606 607 7.226325 TCAAAAATTTGCGAGGATGAAATTGTT 59.774 29.630 0.98 0.00 38.05 2.83
612 613 4.107622 GCGAGGATGAAATTGTTTGGATG 58.892 43.478 0.00 0.00 0.00 3.51
614 615 5.097529 CGAGGATGAAATTGTTTGGATGTG 58.902 41.667 0.00 0.00 0.00 3.21
628 629 6.207614 TGTTTGGATGTGGAATATTTTGACGA 59.792 34.615 0.00 0.00 0.00 4.20
629 630 6.435430 TTGGATGTGGAATATTTTGACGAG 57.565 37.500 0.00 0.00 0.00 4.18
630 631 4.881273 TGGATGTGGAATATTTTGACGAGG 59.119 41.667 0.00 0.00 0.00 4.63
631 632 4.261197 GGATGTGGAATATTTTGACGAGGC 60.261 45.833 0.00 0.00 0.00 4.70
632 633 3.950397 TGTGGAATATTTTGACGAGGCT 58.050 40.909 0.00 0.00 0.00 4.58
633 634 5.092554 TGTGGAATATTTTGACGAGGCTA 57.907 39.130 0.00 0.00 0.00 3.93
634 635 5.492895 TGTGGAATATTTTGACGAGGCTAA 58.507 37.500 0.00 0.00 0.00 3.09
635 636 5.584649 TGTGGAATATTTTGACGAGGCTAAG 59.415 40.000 0.00 0.00 0.00 2.18
636 637 4.574828 TGGAATATTTTGACGAGGCTAAGC 59.425 41.667 0.00 0.00 0.00 3.09
637 638 4.816925 GGAATATTTTGACGAGGCTAAGCT 59.183 41.667 0.00 0.00 0.00 3.74
638 639 5.989777 GGAATATTTTGACGAGGCTAAGCTA 59.010 40.000 0.00 0.00 0.00 3.32
639 640 6.482308 GGAATATTTTGACGAGGCTAAGCTAA 59.518 38.462 0.00 0.00 0.00 3.09
640 641 7.173390 GGAATATTTTGACGAGGCTAAGCTAAT 59.827 37.037 0.00 0.00 0.00 1.73
641 642 8.451908 AATATTTTGACGAGGCTAAGCTAATT 57.548 30.769 0.00 0.00 0.00 1.40
642 643 9.555727 AATATTTTGACGAGGCTAAGCTAATTA 57.444 29.630 0.00 0.00 0.00 1.40
643 644 9.726438 ATATTTTGACGAGGCTAAGCTAATTAT 57.274 29.630 0.00 0.00 0.00 1.28
645 646 8.589335 TTTTGACGAGGCTAAGCTAATTATAG 57.411 34.615 0.00 0.00 0.00 1.31
646 647 6.896021 TGACGAGGCTAAGCTAATTATAGT 57.104 37.500 0.00 0.00 0.00 2.12
647 648 7.286215 TGACGAGGCTAAGCTAATTATAGTT 57.714 36.000 0.00 0.00 0.00 2.24
648 649 7.145985 TGACGAGGCTAAGCTAATTATAGTTG 58.854 38.462 0.00 0.00 0.00 3.16
649 650 7.052142 ACGAGGCTAAGCTAATTATAGTTGT 57.948 36.000 0.00 0.00 0.00 3.32
650 651 6.924060 ACGAGGCTAAGCTAATTATAGTTGTG 59.076 38.462 0.00 0.00 0.00 3.33
651 652 6.366332 CGAGGCTAAGCTAATTATAGTTGTGG 59.634 42.308 0.00 0.00 0.00 4.17
652 653 5.998363 AGGCTAAGCTAATTATAGTTGTGGC 59.002 40.000 0.00 0.00 0.00 5.01
748 783 6.593382 TGCAATGTTTGAAGCAGTTTTACTTT 59.407 30.769 0.00 0.00 32.48 2.66
750 785 7.621102 CAATGTTTGAAGCAGTTTTACTTTCC 58.379 34.615 0.00 0.00 0.00 3.13
753 788 3.904717 TGAAGCAGTTTTACTTTCCCCA 58.095 40.909 0.00 0.00 0.00 4.96
756 791 6.071984 TGAAGCAGTTTTACTTTCCCCATTA 58.928 36.000 0.00 0.00 0.00 1.90
765 800 6.518208 TTACTTTCCCCATTATTTTGGTCG 57.482 37.500 0.00 0.00 34.77 4.79
771 806 4.703093 TCCCCATTATTTTGGTCGAAACTC 59.297 41.667 0.00 0.00 34.77 3.01
786 821 3.557054 CGAAACTCCTCCATCAAGTCCAA 60.557 47.826 0.00 0.00 0.00 3.53
792 827 5.165961 TCCTCCATCAAGTCCAAGTAAAG 57.834 43.478 0.00 0.00 0.00 1.85
816 851 6.017934 AGCAGACAAATACGGCATAATGTTAG 60.018 38.462 0.00 0.00 0.00 2.34
846 882 1.638529 CTCCCAGCCAGGTATCTAGG 58.361 60.000 0.00 0.00 34.66 3.02
866 902 2.303890 GGTTCTCCCCTTTTAACCGAGA 59.696 50.000 0.00 0.00 32.69 4.04
975 1011 2.095212 TCGCACTCTGCACAAGTACTAG 60.095 50.000 0.00 0.00 45.36 2.57
992 1028 6.478129 AGTACTAGTGCTGAGAGTAACTCTT 58.522 40.000 13.15 0.00 41.35 2.85
996 1032 3.057876 AGTGCTGAGAGTAACTCTTGACG 60.058 47.826 0.00 0.00 41.35 4.35
997 1033 2.885266 TGCTGAGAGTAACTCTTGACGT 59.115 45.455 0.00 0.00 41.35 4.34
1029 1065 3.445096 CCAACTTGTTCCAAGATCATCCC 59.555 47.826 10.73 0.00 0.00 3.85
1231 1267 2.108157 GTGCCCGCGTGATGGATA 59.892 61.111 4.92 0.00 0.00 2.59
1360 1396 3.865929 AAGCTGGTGGTCGACTGCG 62.866 63.158 16.46 1.30 39.35 5.18
2049 2111 3.806667 GAGCTGGGCCTGCTGGAT 61.807 66.667 38.13 18.01 38.70 3.41
2370 2432 2.656069 CCCCGTCAAGGACCGTGAT 61.656 63.158 13.48 0.00 45.00 3.06
2475 2537 2.589338 CGTAGCGTGTTCTTTTTCCC 57.411 50.000 0.00 0.00 0.00 3.97
2483 2546 2.799978 GTGTTCTTTTTCCCGGCAAATG 59.200 45.455 0.00 0.00 0.00 2.32
2563 2626 6.380274 TCAGGAAGTTAGGAGTACAATCGATT 59.620 38.462 4.39 4.39 0.00 3.34
2579 2659 3.323729 CGATTAATCGTGCAAGCATGT 57.676 42.857 26.11 0.00 44.74 3.21
2582 2662 4.558470 CGATTAATCGTGCAAGCATGTTTT 59.442 37.500 26.11 10.90 44.74 2.43
2607 2687 4.400251 CACAAATATGAGCAGGACCATTGT 59.600 41.667 0.00 0.00 0.00 2.71
2624 2705 7.601886 GGACCATTGTCTGATCTACAATATGAG 59.398 40.741 19.86 13.89 43.84 2.90
2700 2781 1.297967 CCACGATCGAGCGAGAGTG 60.298 63.158 31.66 17.07 36.18 3.51
2774 2856 8.105829 AGATGATGTTTGATAAACCTCTCAAGT 58.894 33.333 9.83 0.00 40.67 3.16
2796 2878 2.588731 CGAAGATAACGCCATCGCA 58.411 52.632 0.00 0.00 39.84 5.10
2943 3027 3.585862 AGCAACGTCTGTATTGATCGTT 58.414 40.909 0.00 0.00 43.68 3.85
3091 3175 5.869344 TCTTCTCCATGTGTCAGTTTATTCG 59.131 40.000 0.00 0.00 0.00 3.34
3092 3176 5.400066 TCTCCATGTGTCAGTTTATTCGA 57.600 39.130 0.00 0.00 0.00 3.71
3118 3202 0.903924 CCAAATGGCCCACATGACCA 60.904 55.000 0.00 1.53 40.44 4.02
3148 3232 2.283966 CCCGGTCTCTGGAGGTGT 60.284 66.667 0.00 0.00 0.00 4.16
3150 3234 1.321074 CCCGGTCTCTGGAGGTGTAC 61.321 65.000 0.00 0.00 0.00 2.90
3152 3236 0.611062 CGGTCTCTGGAGGTGTACCA 60.611 60.000 3.56 0.00 38.89 3.25
3179 3263 1.275291 ACATACGATATCCTTGGCCCG 59.725 52.381 0.00 0.00 0.00 6.13
3249 3333 0.443869 CGTCCCAGAATTGTCTTGCG 59.556 55.000 0.00 0.00 28.78 4.85
3252 3336 0.523072 CCCAGAATTGTCTTGCGTGG 59.477 55.000 0.00 0.00 28.78 4.94
3255 3339 1.879380 CAGAATTGTCTTGCGTGGGAA 59.121 47.619 0.00 0.00 28.78 3.97
3285 3369 0.179089 GTGCATGCACGAGATCCTCT 60.179 55.000 33.20 0.00 37.19 3.69
3391 3475 2.633481 AGTACTCGCCAGAAGAAAACCT 59.367 45.455 0.00 0.00 0.00 3.50
3430 3514 3.144657 TCAGCTTCCAAAGAGCATTCA 57.855 42.857 0.00 0.00 42.56 2.57
3456 3540 4.130118 ACCGCTGATTATCAATTGAGGAC 58.870 43.478 14.54 6.11 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.442273 TGCGGATGGTTACTTCCATTTTC 59.558 43.478 0.00 0.00 46.72 2.29
1 2 3.426615 TGCGGATGGTTACTTCCATTTT 58.573 40.909 0.00 0.00 46.72 1.82
2 3 3.080300 TGCGGATGGTTACTTCCATTT 57.920 42.857 0.00 0.00 46.72 2.32
3 4 2.799126 TGCGGATGGTTACTTCCATT 57.201 45.000 0.00 0.00 46.72 3.16
5 6 1.626321 TCTTGCGGATGGTTACTTCCA 59.374 47.619 5.91 0.00 40.11 3.53
6 7 2.396590 TCTTGCGGATGGTTACTTCC 57.603 50.000 0.00 0.00 37.52 3.46
7 8 3.938963 TGATTCTTGCGGATGGTTACTTC 59.061 43.478 0.00 0.00 0.00 3.01
8 9 3.950397 TGATTCTTGCGGATGGTTACTT 58.050 40.909 0.00 0.00 0.00 2.24
9 10 3.627395 TGATTCTTGCGGATGGTTACT 57.373 42.857 0.00 0.00 0.00 2.24
10 11 4.695217 TTTGATTCTTGCGGATGGTTAC 57.305 40.909 0.00 0.00 0.00 2.50
11 12 4.097741 CCATTTGATTCTTGCGGATGGTTA 59.902 41.667 0.00 0.00 0.00 2.85
12 13 3.119029 CCATTTGATTCTTGCGGATGGTT 60.119 43.478 0.00 0.00 0.00 3.67
13 14 2.428171 CCATTTGATTCTTGCGGATGGT 59.572 45.455 0.00 0.00 0.00 3.55
14 15 2.800629 GCCATTTGATTCTTGCGGATGG 60.801 50.000 0.00 0.00 36.51 3.51
15 16 2.466846 GCCATTTGATTCTTGCGGATG 58.533 47.619 0.00 0.00 0.00 3.51
16 17 1.410153 GGCCATTTGATTCTTGCGGAT 59.590 47.619 0.00 0.00 0.00 4.18
17 18 0.817013 GGCCATTTGATTCTTGCGGA 59.183 50.000 0.00 0.00 0.00 5.54
18 19 0.819582 AGGCCATTTGATTCTTGCGG 59.180 50.000 5.01 0.00 0.00 5.69
19 20 2.033801 CCTAGGCCATTTGATTCTTGCG 59.966 50.000 5.01 0.00 0.00 4.85
20 21 3.290710 TCCTAGGCCATTTGATTCTTGC 58.709 45.455 5.01 0.00 0.00 4.01
21 22 5.595542 TCATTCCTAGGCCATTTGATTCTTG 59.404 40.000 5.01 0.00 0.00 3.02
22 23 5.769835 TCATTCCTAGGCCATTTGATTCTT 58.230 37.500 5.01 0.00 0.00 2.52
23 24 5.393068 TCATTCCTAGGCCATTTGATTCT 57.607 39.130 5.01 0.00 0.00 2.40
24 25 5.537674 ACATCATTCCTAGGCCATTTGATTC 59.462 40.000 5.01 0.00 0.00 2.52
25 26 5.461327 ACATCATTCCTAGGCCATTTGATT 58.539 37.500 5.01 0.00 0.00 2.57
26 27 5.070823 ACATCATTCCTAGGCCATTTGAT 57.929 39.130 5.01 5.07 0.00 2.57
27 28 4.524802 ACATCATTCCTAGGCCATTTGA 57.475 40.909 5.01 2.83 0.00 2.69
28 29 5.603170 AAACATCATTCCTAGGCCATTTG 57.397 39.130 5.01 1.66 0.00 2.32
29 30 6.194235 TGTAAACATCATTCCTAGGCCATTT 58.806 36.000 5.01 0.62 0.00 2.32
30 31 5.765510 TGTAAACATCATTCCTAGGCCATT 58.234 37.500 5.01 0.00 0.00 3.16
31 32 5.132648 TCTGTAAACATCATTCCTAGGCCAT 59.867 40.000 5.01 0.00 0.00 4.40
32 33 4.473196 TCTGTAAACATCATTCCTAGGCCA 59.527 41.667 5.01 0.00 0.00 5.36
33 34 4.816925 GTCTGTAAACATCATTCCTAGGCC 59.183 45.833 2.96 0.00 0.00 5.19
34 35 5.675538 AGTCTGTAAACATCATTCCTAGGC 58.324 41.667 2.96 0.00 0.00 3.93
35 36 8.239038 TCTAGTCTGTAAACATCATTCCTAGG 57.761 38.462 0.82 0.82 0.00 3.02
36 37 8.908903 ACTCTAGTCTGTAAACATCATTCCTAG 58.091 37.037 0.00 0.00 0.00 3.02
37 38 8.687242 CACTCTAGTCTGTAAACATCATTCCTA 58.313 37.037 0.00 0.00 0.00 2.94
38 39 7.179338 ACACTCTAGTCTGTAAACATCATTCCT 59.821 37.037 0.00 0.00 0.00 3.36
39 40 7.324178 ACACTCTAGTCTGTAAACATCATTCC 58.676 38.462 0.00 0.00 0.00 3.01
40 41 8.764524 AACACTCTAGTCTGTAAACATCATTC 57.235 34.615 0.00 0.00 0.00 2.67
45 46 9.355215 CGAATAAACACTCTAGTCTGTAAACAT 57.645 33.333 0.00 0.00 0.00 2.71
46 47 8.570488 TCGAATAAACACTCTAGTCTGTAAACA 58.430 33.333 0.00 0.00 0.00 2.83
47 48 8.961294 TCGAATAAACACTCTAGTCTGTAAAC 57.039 34.615 0.00 0.00 0.00 2.01
48 49 9.784680 GATCGAATAAACACTCTAGTCTGTAAA 57.215 33.333 0.00 0.00 0.00 2.01
49 50 9.175312 AGATCGAATAAACACTCTAGTCTGTAA 57.825 33.333 0.00 0.00 0.00 2.41
50 51 8.734218 AGATCGAATAAACACTCTAGTCTGTA 57.266 34.615 0.00 0.00 0.00 2.74
51 52 7.337184 TGAGATCGAATAAACACTCTAGTCTGT 59.663 37.037 0.00 0.00 0.00 3.41
52 53 7.698628 TGAGATCGAATAAACACTCTAGTCTG 58.301 38.462 0.00 0.00 0.00 3.51
53 54 7.867305 TGAGATCGAATAAACACTCTAGTCT 57.133 36.000 0.00 0.00 0.00 3.24
58 59 8.855110 ACAGATATGAGATCGAATAAACACTCT 58.145 33.333 0.00 0.00 0.00 3.24
59 60 9.469807 AACAGATATGAGATCGAATAAACACTC 57.530 33.333 0.00 0.00 0.00 3.51
60 61 9.823647 AAACAGATATGAGATCGAATAAACACT 57.176 29.630 0.00 0.00 0.00 3.55
66 67 9.847706 GCTTAGAAACAGATATGAGATCGAATA 57.152 33.333 0.00 0.00 0.00 1.75
67 68 8.363390 TGCTTAGAAACAGATATGAGATCGAAT 58.637 33.333 0.00 0.00 0.00 3.34
68 69 7.716612 TGCTTAGAAACAGATATGAGATCGAA 58.283 34.615 0.00 0.00 0.00 3.71
69 70 7.277174 TGCTTAGAAACAGATATGAGATCGA 57.723 36.000 0.00 0.00 0.00 3.59
70 71 7.359097 GCTTGCTTAGAAACAGATATGAGATCG 60.359 40.741 0.00 0.00 0.00 3.69
71 72 7.095271 GGCTTGCTTAGAAACAGATATGAGATC 60.095 40.741 0.00 0.00 0.00 2.75
72 73 6.709846 GGCTTGCTTAGAAACAGATATGAGAT 59.290 38.462 0.00 0.00 0.00 2.75
73 74 6.051717 GGCTTGCTTAGAAACAGATATGAGA 58.948 40.000 0.00 0.00 0.00 3.27
74 75 5.238214 GGGCTTGCTTAGAAACAGATATGAG 59.762 44.000 0.00 0.00 0.00 2.90
75 76 5.126067 GGGCTTGCTTAGAAACAGATATGA 58.874 41.667 0.00 0.00 0.00 2.15
76 77 4.276926 GGGGCTTGCTTAGAAACAGATATG 59.723 45.833 0.00 0.00 0.00 1.78
77 78 4.166919 AGGGGCTTGCTTAGAAACAGATAT 59.833 41.667 0.00 0.00 0.00 1.63
78 79 3.523564 AGGGGCTTGCTTAGAAACAGATA 59.476 43.478 0.00 0.00 0.00 1.98
79 80 2.310052 AGGGGCTTGCTTAGAAACAGAT 59.690 45.455 0.00 0.00 0.00 2.90
80 81 1.705186 AGGGGCTTGCTTAGAAACAGA 59.295 47.619 0.00 0.00 0.00 3.41
81 82 1.815003 CAGGGGCTTGCTTAGAAACAG 59.185 52.381 0.00 0.00 0.00 3.16
82 83 1.547675 CCAGGGGCTTGCTTAGAAACA 60.548 52.381 0.00 0.00 0.00 2.83
83 84 1.177401 CCAGGGGCTTGCTTAGAAAC 58.823 55.000 0.00 0.00 0.00 2.78
84 85 1.072266 TCCAGGGGCTTGCTTAGAAA 58.928 50.000 0.00 0.00 0.00 2.52
85 86 1.064463 CATCCAGGGGCTTGCTTAGAA 60.064 52.381 0.00 0.00 0.00 2.10
86 87 0.548031 CATCCAGGGGCTTGCTTAGA 59.452 55.000 0.00 0.00 0.00 2.10
87 88 0.548031 TCATCCAGGGGCTTGCTTAG 59.452 55.000 0.00 0.00 0.00 2.18
88 89 1.225373 ATCATCCAGGGGCTTGCTTA 58.775 50.000 0.00 0.00 0.00 3.09
89 90 1.225373 TATCATCCAGGGGCTTGCTT 58.775 50.000 0.00 0.00 0.00 3.91
90 91 1.144503 CTTATCATCCAGGGGCTTGCT 59.855 52.381 0.00 0.00 0.00 3.91
91 92 1.613836 CTTATCATCCAGGGGCTTGC 58.386 55.000 0.00 0.00 0.00 4.01
92 93 1.202976 CCCTTATCATCCAGGGGCTTG 60.203 57.143 0.00 0.00 45.75 4.01
93 94 1.152649 CCCTTATCATCCAGGGGCTT 58.847 55.000 0.00 0.00 45.75 4.35
94 95 2.874260 CCCTTATCATCCAGGGGCT 58.126 57.895 0.00 0.00 45.75 5.19
98 99 3.803186 ATCAAGCCCTTATCATCCAGG 57.197 47.619 0.00 0.00 0.00 4.45
99 100 5.222007 ACCTTATCAAGCCCTTATCATCCAG 60.222 44.000 0.00 0.00 0.00 3.86
100 101 4.665009 ACCTTATCAAGCCCTTATCATCCA 59.335 41.667 0.00 0.00 0.00 3.41
101 102 5.006386 CACCTTATCAAGCCCTTATCATCC 58.994 45.833 0.00 0.00 0.00 3.51
102 103 5.869579 TCACCTTATCAAGCCCTTATCATC 58.130 41.667 0.00 0.00 0.00 2.92
103 104 5.912149 TCACCTTATCAAGCCCTTATCAT 57.088 39.130 0.00 0.00 0.00 2.45
104 105 5.708736 TTCACCTTATCAAGCCCTTATCA 57.291 39.130 0.00 0.00 0.00 2.15
105 106 7.428826 CAAATTCACCTTATCAAGCCCTTATC 58.571 38.462 0.00 0.00 0.00 1.75
106 107 6.183360 GCAAATTCACCTTATCAAGCCCTTAT 60.183 38.462 0.00 0.00 0.00 1.73
107 108 5.127031 GCAAATTCACCTTATCAAGCCCTTA 59.873 40.000 0.00 0.00 0.00 2.69
108 109 4.081476 GCAAATTCACCTTATCAAGCCCTT 60.081 41.667 0.00 0.00 0.00 3.95
109 110 3.448660 GCAAATTCACCTTATCAAGCCCT 59.551 43.478 0.00 0.00 0.00 5.19
110 111 3.195396 TGCAAATTCACCTTATCAAGCCC 59.805 43.478 0.00 0.00 0.00 5.19
111 112 4.454728 TGCAAATTCACCTTATCAAGCC 57.545 40.909 0.00 0.00 0.00 4.35
112 113 7.035004 TGTATTGCAAATTCACCTTATCAAGC 58.965 34.615 1.71 0.00 0.00 4.01
118 119 9.237187 TGTCTTATGTATTGCAAATTCACCTTA 57.763 29.630 1.71 0.00 0.00 2.69
119 120 8.121305 TGTCTTATGTATTGCAAATTCACCTT 57.879 30.769 1.71 0.00 0.00 3.50
120 121 7.701539 TGTCTTATGTATTGCAAATTCACCT 57.298 32.000 1.71 0.00 0.00 4.00
121 122 8.190122 TCATGTCTTATGTATTGCAAATTCACC 58.810 33.333 1.71 0.00 0.00 4.02
122 123 9.740239 ATCATGTCTTATGTATTGCAAATTCAC 57.260 29.630 1.71 0.00 0.00 3.18
123 124 9.738832 CATCATGTCTTATGTATTGCAAATTCA 57.261 29.630 1.71 3.54 0.00 2.57
124 125 9.740239 ACATCATGTCTTATGTATTGCAAATTC 57.260 29.630 1.71 0.00 34.61 2.17
125 126 9.524106 CACATCATGTCTTATGTATTGCAAATT 57.476 29.630 1.71 0.00 34.61 1.82
126 127 8.139350 CCACATCATGTCTTATGTATTGCAAAT 58.861 33.333 1.71 0.00 34.61 2.32
127 128 7.482474 CCACATCATGTCTTATGTATTGCAAA 58.518 34.615 1.71 0.00 34.61 3.68
128 129 6.459985 GCCACATCATGTCTTATGTATTGCAA 60.460 38.462 0.00 0.00 34.61 4.08
129 130 5.008911 GCCACATCATGTCTTATGTATTGCA 59.991 40.000 0.00 0.00 34.61 4.08
130 131 5.455392 GCCACATCATGTCTTATGTATTGC 58.545 41.667 0.00 0.00 34.61 3.56
131 132 5.682869 CGCCACATCATGTCTTATGTATTG 58.317 41.667 0.00 0.00 34.61 1.90
132 133 4.214119 GCGCCACATCATGTCTTATGTATT 59.786 41.667 0.00 0.00 34.61 1.89
133 134 3.748048 GCGCCACATCATGTCTTATGTAT 59.252 43.478 0.00 0.00 34.61 2.29
134 135 3.130633 GCGCCACATCATGTCTTATGTA 58.869 45.455 0.00 0.00 34.61 2.29
135 136 1.942657 GCGCCACATCATGTCTTATGT 59.057 47.619 0.00 0.00 36.78 2.29
136 137 2.216046 AGCGCCACATCATGTCTTATG 58.784 47.619 2.29 0.00 0.00 1.90
137 138 2.615447 CAAGCGCCACATCATGTCTTAT 59.385 45.455 2.29 0.00 0.00 1.73
138 139 2.009051 CAAGCGCCACATCATGTCTTA 58.991 47.619 2.29 0.00 0.00 2.10
139 140 0.806868 CAAGCGCCACATCATGTCTT 59.193 50.000 2.29 0.00 0.00 3.01
140 141 1.651240 GCAAGCGCCACATCATGTCT 61.651 55.000 2.29 0.00 0.00 3.41
141 142 1.226491 GCAAGCGCCACATCATGTC 60.226 57.895 2.29 0.00 0.00 3.06
142 143 2.879907 GCAAGCGCCACATCATGT 59.120 55.556 2.29 0.00 0.00 3.21
143 144 2.277692 CGCAAGCGCCACATCATG 60.278 61.111 2.29 0.00 33.11 3.07
144 145 1.865788 AAACGCAAGCGCCACATCAT 61.866 50.000 15.09 0.00 44.19 2.45
145 146 2.551006 AAACGCAAGCGCCACATCA 61.551 52.632 15.09 0.00 44.19 3.07
146 147 2.082366 CAAACGCAAGCGCCACATC 61.082 57.895 15.09 0.00 44.19 3.06
147 148 1.511318 TACAAACGCAAGCGCCACAT 61.511 50.000 15.09 0.00 44.19 3.21
148 149 2.180862 TACAAACGCAAGCGCCACA 61.181 52.632 15.09 0.00 44.19 4.17
149 150 1.724581 GTACAAACGCAAGCGCCAC 60.725 57.895 15.09 1.89 44.19 5.01
150 151 1.890041 AGTACAAACGCAAGCGCCA 60.890 52.632 15.09 0.00 44.19 5.69
151 152 1.440353 CAGTACAAACGCAAGCGCC 60.440 57.895 15.09 0.00 44.19 6.53
152 153 0.991770 CACAGTACAAACGCAAGCGC 60.992 55.000 15.09 0.00 44.19 5.92
153 154 0.303493 ACACAGTACAAACGCAAGCG 59.697 50.000 13.50 13.50 46.03 4.68
154 155 2.468532 AACACAGTACAAACGCAAGC 57.531 45.000 0.00 0.00 45.62 4.01
213 214 0.754957 CCTGCCACCTTGTTGGAACA 60.755 55.000 0.00 0.00 39.24 3.18
214 215 0.467290 TCCTGCCACCTTGTTGGAAC 60.467 55.000 0.00 0.00 39.24 3.62
215 216 0.178992 CTCCTGCCACCTTGTTGGAA 60.179 55.000 0.00 0.00 39.24 3.53
216 217 1.455849 CTCCTGCCACCTTGTTGGA 59.544 57.895 0.00 0.00 39.24 3.53
217 218 2.270986 GCTCCTGCCACCTTGTTGG 61.271 63.158 0.00 0.00 42.93 3.77
218 219 2.620112 CGCTCCTGCCACCTTGTTG 61.620 63.158 0.00 0.00 35.36 3.33
219 220 2.281761 CGCTCCTGCCACCTTGTT 60.282 61.111 0.00 0.00 35.36 2.83
220 221 2.738213 CTTCGCTCCTGCCACCTTGT 62.738 60.000 0.00 0.00 35.36 3.16
221 222 2.032528 TTCGCTCCTGCCACCTTG 59.967 61.111 0.00 0.00 35.36 3.61
222 223 2.348998 CTTCGCTCCTGCCACCTT 59.651 61.111 0.00 0.00 35.36 3.50
223 224 3.710722 CCTTCGCTCCTGCCACCT 61.711 66.667 0.00 0.00 35.36 4.00
224 225 4.785453 CCCTTCGCTCCTGCCACC 62.785 72.222 0.00 0.00 35.36 4.61
225 226 4.785453 CCCCTTCGCTCCTGCCAC 62.785 72.222 0.00 0.00 35.36 5.01
227 228 3.689002 CTTCCCCTTCGCTCCTGCC 62.689 68.421 0.00 0.00 35.36 4.85
228 229 2.124942 CTTCCCCTTCGCTCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
229 230 2.586792 CCTTCCCCTTCGCTCCTG 59.413 66.667 0.00 0.00 0.00 3.86
230 231 2.689034 CCCTTCCCCTTCGCTCCT 60.689 66.667 0.00 0.00 0.00 3.69
231 232 4.491409 GCCCTTCCCCTTCGCTCC 62.491 72.222 0.00 0.00 0.00 4.70
232 233 2.558380 ATTGCCCTTCCCCTTCGCTC 62.558 60.000 0.00 0.00 0.00 5.03
233 234 1.279025 TATTGCCCTTCCCCTTCGCT 61.279 55.000 0.00 0.00 0.00 4.93
234 235 0.178990 ATATTGCCCTTCCCCTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
235 236 1.956477 CAATATTGCCCTTCCCCTTCG 59.044 52.381 1.74 0.00 0.00 3.79
236 237 2.319844 CCAATATTGCCCTTCCCCTTC 58.680 52.381 10.11 0.00 0.00 3.46
237 238 1.062198 CCCAATATTGCCCTTCCCCTT 60.062 52.381 10.11 0.00 0.00 3.95
238 239 0.562674 CCCAATATTGCCCTTCCCCT 59.437 55.000 10.11 0.00 0.00 4.79
239 240 0.560688 TCCCAATATTGCCCTTCCCC 59.439 55.000 10.11 0.00 0.00 4.81
240 241 1.704641 GTCCCAATATTGCCCTTCCC 58.295 55.000 10.11 0.00 0.00 3.97
241 242 1.318576 CGTCCCAATATTGCCCTTCC 58.681 55.000 10.11 0.00 0.00 3.46
242 243 1.133915 TCCGTCCCAATATTGCCCTTC 60.134 52.381 10.11 0.00 0.00 3.46
243 244 0.923358 TCCGTCCCAATATTGCCCTT 59.077 50.000 10.11 0.00 0.00 3.95
244 245 0.474184 CTCCGTCCCAATATTGCCCT 59.526 55.000 10.11 0.00 0.00 5.19
245 246 0.537371 CCTCCGTCCCAATATTGCCC 60.537 60.000 10.11 0.00 0.00 5.36
246 247 1.172812 GCCTCCGTCCCAATATTGCC 61.173 60.000 10.11 0.00 0.00 4.52
247 248 0.465460 TGCCTCCGTCCCAATATTGC 60.465 55.000 10.11 0.00 0.00 3.56
248 249 1.134098 ACTGCCTCCGTCCCAATATTG 60.134 52.381 8.58 8.58 0.00 1.90
249 250 1.213296 ACTGCCTCCGTCCCAATATT 58.787 50.000 0.00 0.00 0.00 1.28
250 251 2.097110 TACTGCCTCCGTCCCAATAT 57.903 50.000 0.00 0.00 0.00 1.28
251 252 1.691976 CATACTGCCTCCGTCCCAATA 59.308 52.381 0.00 0.00 0.00 1.90
252 253 0.469917 CATACTGCCTCCGTCCCAAT 59.530 55.000 0.00 0.00 0.00 3.16
253 254 0.616395 TCATACTGCCTCCGTCCCAA 60.616 55.000 0.00 0.00 0.00 4.12
254 255 0.398522 ATCATACTGCCTCCGTCCCA 60.399 55.000 0.00 0.00 0.00 4.37
255 256 0.759346 AATCATACTGCCTCCGTCCC 59.241 55.000 0.00 0.00 0.00 4.46
256 257 2.622064 AAATCATACTGCCTCCGTCC 57.378 50.000 0.00 0.00 0.00 4.79
257 258 4.691216 GGAATAAATCATACTGCCTCCGTC 59.309 45.833 0.00 0.00 0.00 4.79
258 259 4.505039 GGGAATAAATCATACTGCCTCCGT 60.505 45.833 0.00 0.00 0.00 4.69
259 260 4.003648 GGGAATAAATCATACTGCCTCCG 58.996 47.826 0.00 0.00 0.00 4.63
260 261 5.248380 AGGGAATAAATCATACTGCCTCC 57.752 43.478 0.00 0.00 0.00 4.30
261 262 7.010339 ACTAGGGAATAAATCATACTGCCTC 57.990 40.000 0.00 0.00 0.00 4.70
262 263 7.147302 ACAACTAGGGAATAAATCATACTGCCT 60.147 37.037 0.00 0.00 0.00 4.75
263 264 6.998673 ACAACTAGGGAATAAATCATACTGCC 59.001 38.462 0.00 0.00 0.00 4.85
264 265 8.989980 GTACAACTAGGGAATAAATCATACTGC 58.010 37.037 0.00 0.00 0.00 4.40
273 274 9.609346 GCTGATTTAGTACAACTAGGGAATAAA 57.391 33.333 0.00 0.00 31.47 1.40
274 275 8.989131 AGCTGATTTAGTACAACTAGGGAATAA 58.011 33.333 0.00 0.00 31.47 1.40
275 276 8.548880 AGCTGATTTAGTACAACTAGGGAATA 57.451 34.615 0.00 0.00 31.47 1.75
276 277 7.439108 AGCTGATTTAGTACAACTAGGGAAT 57.561 36.000 0.00 0.00 31.47 3.01
277 278 6.869206 AGCTGATTTAGTACAACTAGGGAA 57.131 37.500 0.00 0.00 31.47 3.97
278 279 6.039047 CGTAGCTGATTTAGTACAACTAGGGA 59.961 42.308 0.00 0.00 31.47 4.20
279 280 6.207213 CGTAGCTGATTTAGTACAACTAGGG 58.793 44.000 0.00 0.00 31.47 3.53
299 300 4.935808 ACTTCAGTCCCAAAATAAGCGTAG 59.064 41.667 0.00 0.00 0.00 3.51
300 301 4.901868 ACTTCAGTCCCAAAATAAGCGTA 58.098 39.130 0.00 0.00 0.00 4.42
301 302 3.751518 ACTTCAGTCCCAAAATAAGCGT 58.248 40.909 0.00 0.00 0.00 5.07
302 303 4.935808 ACTACTTCAGTCCCAAAATAAGCG 59.064 41.667 0.00 0.00 28.33 4.68
303 304 7.769044 TCATACTACTTCAGTCCCAAAATAAGC 59.231 37.037 0.00 0.00 38.80 3.09
304 305 9.838339 ATCATACTACTTCAGTCCCAAAATAAG 57.162 33.333 0.00 0.00 38.80 1.73
309 310 9.613428 CATAAATCATACTACTTCAGTCCCAAA 57.387 33.333 0.00 0.00 38.80 3.28
310 311 8.768397 ACATAAATCATACTACTTCAGTCCCAA 58.232 33.333 0.00 0.00 38.80 4.12
311 312 8.319057 ACATAAATCATACTACTTCAGTCCCA 57.681 34.615 0.00 0.00 38.80 4.37
312 313 9.262358 GAACATAAATCATACTACTTCAGTCCC 57.738 37.037 0.00 0.00 38.80 4.46
328 329 9.065871 GCAACAATCTTGTACAGAACATAAATC 57.934 33.333 0.00 0.00 41.31 2.17
329 330 7.750458 CGCAACAATCTTGTACAGAACATAAAT 59.250 33.333 0.00 0.00 41.31 1.40
330 331 7.075121 CGCAACAATCTTGTACAGAACATAAA 58.925 34.615 0.00 0.00 41.31 1.40
331 332 6.203915 ACGCAACAATCTTGTACAGAACATAA 59.796 34.615 0.00 0.00 41.31 1.90
332 333 5.699001 ACGCAACAATCTTGTACAGAACATA 59.301 36.000 0.00 0.00 41.31 2.29
333 334 4.515191 ACGCAACAATCTTGTACAGAACAT 59.485 37.500 0.00 0.00 41.31 2.71
334 335 3.874543 ACGCAACAATCTTGTACAGAACA 59.125 39.130 0.00 0.00 41.31 3.18
335 336 4.211389 CACGCAACAATCTTGTACAGAAC 58.789 43.478 0.00 0.00 41.31 3.01
336 337 3.303725 GCACGCAACAATCTTGTACAGAA 60.304 43.478 0.00 0.00 41.31 3.02
337 338 2.223144 GCACGCAACAATCTTGTACAGA 59.777 45.455 0.00 0.00 41.31 3.41
338 339 2.224079 AGCACGCAACAATCTTGTACAG 59.776 45.455 0.00 0.00 41.31 2.74
339 340 2.032117 CAGCACGCAACAATCTTGTACA 60.032 45.455 0.00 0.00 41.31 2.90
340 341 2.574322 CAGCACGCAACAATCTTGTAC 58.426 47.619 0.00 0.00 41.31 2.90
341 342 1.069296 GCAGCACGCAACAATCTTGTA 60.069 47.619 0.00 0.00 41.31 2.41
342 343 0.318107 GCAGCACGCAACAATCTTGT 60.318 50.000 0.00 0.00 44.72 3.16
343 344 0.039798 AGCAGCACGCAACAATCTTG 60.040 50.000 0.00 0.00 46.13 3.02
344 345 0.239347 GAGCAGCACGCAACAATCTT 59.761 50.000 0.00 0.00 46.13 2.40
345 346 0.886043 TGAGCAGCACGCAACAATCT 60.886 50.000 0.00 0.00 46.13 2.40
346 347 0.040157 TTGAGCAGCACGCAACAATC 60.040 50.000 0.00 0.00 46.13 2.67
347 348 0.385029 TTTGAGCAGCACGCAACAAT 59.615 45.000 0.00 0.00 46.13 2.71
348 349 0.385029 ATTTGAGCAGCACGCAACAA 59.615 45.000 0.00 4.28 46.13 2.83
349 350 0.385029 AATTTGAGCAGCACGCAACA 59.615 45.000 0.00 0.00 46.13 3.33
350 351 1.190763 CAAATTTGAGCAGCACGCAAC 59.809 47.619 13.08 0.00 46.13 4.17
351 352 1.202394 ACAAATTTGAGCAGCACGCAA 60.202 42.857 24.64 0.00 46.13 4.85
352 353 0.385029 ACAAATTTGAGCAGCACGCA 59.615 45.000 24.64 0.00 46.13 5.24
353 354 1.490621 AACAAATTTGAGCAGCACGC 58.509 45.000 24.64 0.00 42.91 5.34
354 355 4.085107 GGTAAAACAAATTTGAGCAGCACG 60.085 41.667 24.64 0.00 32.27 5.34
355 356 5.049828 AGGTAAAACAAATTTGAGCAGCAC 58.950 37.500 24.64 12.77 30.04 4.40
356 357 5.275067 AGGTAAAACAAATTTGAGCAGCA 57.725 34.783 24.64 2.03 30.04 4.41
357 358 5.985530 AGAAGGTAAAACAAATTTGAGCAGC 59.014 36.000 24.64 14.36 30.04 5.25
358 359 8.968242 GTAAGAAGGTAAAACAAATTTGAGCAG 58.032 33.333 24.64 0.00 30.04 4.24
359 360 8.691797 AGTAAGAAGGTAAAACAAATTTGAGCA 58.308 29.630 24.64 4.07 30.04 4.26
360 361 9.181805 GAGTAAGAAGGTAAAACAAATTTGAGC 57.818 33.333 24.64 11.41 32.27 4.26
367 368 9.760077 CTCAGTAGAGTAAGAAGGTAAAACAAA 57.240 33.333 0.00 0.00 37.11 2.83
391 392 1.015868 CCGGACGGAGAGAGTAACTC 58.984 60.000 4.40 0.00 45.22 3.01
392 393 0.617413 TCCGGACGGAGAGAGTAACT 59.383 55.000 9.76 0.00 39.76 2.24
393 394 1.457346 TTCCGGACGGAGAGAGTAAC 58.543 55.000 13.64 0.00 46.06 2.50
394 395 2.205022 TTTCCGGACGGAGAGAGTAA 57.795 50.000 13.64 1.47 46.06 2.24
395 396 2.431954 ATTTCCGGACGGAGAGAGTA 57.568 50.000 13.64 0.00 46.06 2.59
396 397 2.022934 GTATTTCCGGACGGAGAGAGT 58.977 52.381 13.64 0.00 46.06 3.24
397 398 2.299521 AGTATTTCCGGACGGAGAGAG 58.700 52.381 13.64 0.00 46.06 3.20
398 399 2.431954 AGTATTTCCGGACGGAGAGA 57.568 50.000 13.64 3.93 46.06 3.10
399 400 4.277672 TGATAAGTATTTCCGGACGGAGAG 59.722 45.833 13.64 0.00 46.06 3.20
400 401 4.209538 TGATAAGTATTTCCGGACGGAGA 58.790 43.478 13.64 10.06 46.06 3.71
401 402 4.579454 TGATAAGTATTTCCGGACGGAG 57.421 45.455 13.64 0.00 46.06 4.63
402 403 4.585581 TGATGATAAGTATTTCCGGACGGA 59.414 41.667 1.83 9.76 43.52 4.69
403 404 4.878439 TGATGATAAGTATTTCCGGACGG 58.122 43.478 1.83 3.96 0.00 4.79
404 405 6.838198 TTTGATGATAAGTATTTCCGGACG 57.162 37.500 1.83 0.00 0.00 4.79
405 406 8.836413 TCATTTTGATGATAAGTATTTCCGGAC 58.164 33.333 1.83 0.00 0.00 4.79
406 407 8.972458 TCATTTTGATGATAAGTATTTCCGGA 57.028 30.769 0.00 0.00 0.00 5.14
483 484 9.316730 CCGAAAATATTTGTCATCAAAATGGAT 57.683 29.630 0.39 0.00 44.97 3.41
484 485 8.526978 TCCGAAAATATTTGTCATCAAAATGGA 58.473 29.630 0.39 0.00 44.97 3.41
485 486 8.594687 GTCCGAAAATATTTGTCATCAAAATGG 58.405 33.333 0.39 0.00 44.97 3.16
486 487 8.313227 CGTCCGAAAATATTTGTCATCAAAATG 58.687 33.333 0.39 0.00 44.97 2.32
487 488 7.487829 CCGTCCGAAAATATTTGTCATCAAAAT 59.512 33.333 0.39 0.00 44.97 1.82
488 489 6.804295 CCGTCCGAAAATATTTGTCATCAAAA 59.196 34.615 0.39 0.00 44.97 2.44
489 490 6.149640 TCCGTCCGAAAATATTTGTCATCAAA 59.850 34.615 0.39 0.00 45.71 2.69
490 491 5.644206 TCCGTCCGAAAATATTTGTCATCAA 59.356 36.000 0.39 0.00 0.00 2.57
491 492 5.179533 TCCGTCCGAAAATATTTGTCATCA 58.820 37.500 0.39 0.00 0.00 3.07
492 493 5.728351 TCCGTCCGAAAATATTTGTCATC 57.272 39.130 0.39 0.00 0.00 2.92
493 494 5.065988 CCTTCCGTCCGAAAATATTTGTCAT 59.934 40.000 0.39 0.00 0.00 3.06
494 495 4.393680 CCTTCCGTCCGAAAATATTTGTCA 59.606 41.667 0.39 0.00 0.00 3.58
495 496 4.632688 TCCTTCCGTCCGAAAATATTTGTC 59.367 41.667 0.39 1.54 0.00 3.18
496 497 4.581868 TCCTTCCGTCCGAAAATATTTGT 58.418 39.130 0.39 0.00 0.00 2.83
497 498 4.634443 ACTCCTTCCGTCCGAAAATATTTG 59.366 41.667 0.39 0.00 0.00 2.32
498 499 4.840271 ACTCCTTCCGTCCGAAAATATTT 58.160 39.130 0.00 0.00 0.00 1.40
499 500 4.482952 ACTCCTTCCGTCCGAAAATATT 57.517 40.909 0.00 0.00 0.00 1.28
500 501 5.803237 ATACTCCTTCCGTCCGAAAATAT 57.197 39.130 0.00 0.00 0.00 1.28
501 502 6.906157 ATATACTCCTTCCGTCCGAAAATA 57.094 37.500 0.00 0.00 0.00 1.40
502 503 5.803237 ATATACTCCTTCCGTCCGAAAAT 57.197 39.130 0.00 0.00 0.00 1.82
503 504 5.127519 TGAATATACTCCTTCCGTCCGAAAA 59.872 40.000 0.00 0.00 0.00 2.29
504 505 4.646040 TGAATATACTCCTTCCGTCCGAAA 59.354 41.667 0.00 0.00 0.00 3.46
505 506 4.209538 TGAATATACTCCTTCCGTCCGAA 58.790 43.478 0.00 0.00 0.00 4.30
506 507 3.824133 TGAATATACTCCTTCCGTCCGA 58.176 45.455 0.00 0.00 0.00 4.55
507 508 4.785511 ATGAATATACTCCTTCCGTCCG 57.214 45.455 0.00 0.00 0.00 4.79
508 509 6.097915 TGAATGAATATACTCCTTCCGTCC 57.902 41.667 0.00 0.00 0.00 4.79
509 510 7.872993 TGAATGAATGAATATACTCCTTCCGTC 59.127 37.037 0.00 0.00 0.00 4.79
510 511 7.735917 TGAATGAATGAATATACTCCTTCCGT 58.264 34.615 0.00 0.00 0.00 4.69
511 512 8.783833 ATGAATGAATGAATATACTCCTTCCG 57.216 34.615 0.00 0.00 0.00 4.30
512 513 9.956640 AGATGAATGAATGAATATACTCCTTCC 57.043 33.333 0.00 0.00 0.00 3.46
523 524 9.994432 GAACTCGTAAAAGATGAATGAATGAAT 57.006 29.630 0.00 0.00 0.00 2.57
524 525 8.450964 GGAACTCGTAAAAGATGAATGAATGAA 58.549 33.333 0.00 0.00 0.00 2.57
525 526 7.201522 CGGAACTCGTAAAAGATGAATGAATGA 60.202 37.037 0.00 0.00 0.00 2.57
526 527 6.901887 CGGAACTCGTAAAAGATGAATGAATG 59.098 38.462 0.00 0.00 0.00 2.67
551 552 2.183046 GCTCAGAGGTCCGCAGAC 59.817 66.667 0.00 0.00 42.73 3.51
571 572 2.794350 CGCAAATTTTTGACCTTTCGCT 59.206 40.909 7.21 0.00 40.55 4.93
574 575 4.616953 TCCTCGCAAATTTTTGACCTTTC 58.383 39.130 7.21 0.00 40.55 2.62
586 587 4.931002 CCAAACAATTTCATCCTCGCAAAT 59.069 37.500 0.00 0.00 0.00 2.32
606 607 5.356751 CCTCGTCAAAATATTCCACATCCAA 59.643 40.000 0.00 0.00 0.00 3.53
612 613 5.504173 GCTTAGCCTCGTCAAAATATTCCAC 60.504 44.000 0.00 0.00 0.00 4.02
614 615 4.816925 AGCTTAGCCTCGTCAAAATATTCC 59.183 41.667 0.00 0.00 0.00 3.01
628 629 5.998363 GCCACAACTATAATTAGCTTAGCCT 59.002 40.000 0.00 0.00 0.00 4.58
629 630 5.998363 AGCCACAACTATAATTAGCTTAGCC 59.002 40.000 0.00 0.00 0.00 3.93
630 631 6.483640 ACAGCCACAACTATAATTAGCTTAGC 59.516 38.462 0.00 0.00 0.00 3.09
631 632 7.710907 TCACAGCCACAACTATAATTAGCTTAG 59.289 37.037 0.00 0.00 0.00 2.18
632 633 7.561251 TCACAGCCACAACTATAATTAGCTTA 58.439 34.615 0.00 0.00 0.00 3.09
633 634 6.414732 TCACAGCCACAACTATAATTAGCTT 58.585 36.000 0.00 0.00 0.00 3.74
634 635 5.989477 TCACAGCCACAACTATAATTAGCT 58.011 37.500 0.00 0.00 0.00 3.32
635 636 6.677781 TTCACAGCCACAACTATAATTAGC 57.322 37.500 0.00 0.00 0.00 3.09
636 637 7.189512 GCTTTCACAGCCACAACTATAATTAG 58.810 38.462 0.00 0.00 43.65 1.73
637 638 7.083875 GCTTTCACAGCCACAACTATAATTA 57.916 36.000 0.00 0.00 43.65 1.40
638 639 5.954335 GCTTTCACAGCCACAACTATAATT 58.046 37.500 0.00 0.00 43.65 1.40
639 640 5.567138 GCTTTCACAGCCACAACTATAAT 57.433 39.130 0.00 0.00 43.65 1.28
667 668 1.030457 GGATCTGCAAATGCTCCCAG 58.970 55.000 6.97 0.00 42.66 4.45
714 749 0.311790 CAAACATTGCAGCTGACCGT 59.688 50.000 20.43 5.22 0.00 4.83
743 778 5.817784 TCGACCAAAATAATGGGGAAAGTA 58.182 37.500 0.00 0.00 45.18 2.24
748 783 4.668636 AGTTTCGACCAAAATAATGGGGA 58.331 39.130 0.00 0.00 45.18 4.81
750 785 4.705023 AGGAGTTTCGACCAAAATAATGGG 59.295 41.667 0.00 0.00 45.18 4.00
753 788 5.566469 TGGAGGAGTTTCGACCAAAATAAT 58.434 37.500 0.00 0.00 0.00 1.28
756 791 3.502123 TGGAGGAGTTTCGACCAAAAT 57.498 42.857 0.00 0.00 0.00 1.82
765 800 3.703001 TGGACTTGATGGAGGAGTTTC 57.297 47.619 0.00 0.00 0.00 2.78
771 806 3.691609 GCTTTACTTGGACTTGATGGAGG 59.308 47.826 0.00 0.00 0.00 4.30
786 821 3.670625 TGCCGTATTTGTCTGCTTTACT 58.329 40.909 0.00 0.00 0.00 2.24
792 827 4.552166 ACATTATGCCGTATTTGTCTGC 57.448 40.909 0.00 0.00 0.00 4.26
816 851 1.140804 GCTGGGAGCTCTCGTCTTC 59.859 63.158 14.64 0.00 38.45 2.87
846 882 3.690475 TCTCGGTTAAAAGGGGAGAAC 57.310 47.619 0.00 0.00 31.29 3.01
975 1011 3.238441 CGTCAAGAGTTACTCTCAGCAC 58.762 50.000 15.81 8.69 44.98 4.40
979 1015 5.106277 CCATACACGTCAAGAGTTACTCTCA 60.106 44.000 15.81 2.64 44.98 3.27
1104 1140 4.925861 GGGCCGATGAGCTCTGGC 62.926 72.222 26.92 26.92 40.57 4.85
1140 1176 2.811317 GACAGGCGCTTGGTCTCG 60.811 66.667 24.27 0.00 0.00 4.04
1249 1285 3.782443 GACTCCGGCCGGGTGAAT 61.782 66.667 42.36 23.59 37.00 2.57
1912 1968 2.266055 CTCGAAGGTGGTGGCCTC 59.734 66.667 3.32 0.00 38.03 4.70
2045 2107 2.223876 GCGTTTCCGTAGTATCCATCCA 60.224 50.000 0.00 0.00 36.15 3.41
2049 2111 0.810648 ACGCGTTTCCGTAGTATCCA 59.189 50.000 5.58 0.00 40.08 3.41
2328 2390 1.179814 AGAAGGTCACGCCGAAGACT 61.180 55.000 12.47 0.00 43.70 3.24
2370 2432 4.467084 GCAATCGCGTCCTCCCCA 62.467 66.667 5.77 0.00 0.00 4.96
2467 2529 1.892474 TCTCCATTTGCCGGGAAAAAG 59.108 47.619 25.57 20.59 31.58 2.27
2475 2537 4.107622 CAAATAAAGCTCTCCATTTGCCG 58.892 43.478 8.45 0.00 33.18 5.69
2483 2546 6.786207 ACGCTTTTATCAAATAAAGCTCTCC 58.214 36.000 15.08 0.00 36.23 3.71
2582 2662 2.290832 TGGTCCTGCTCATATTTGTGCA 60.291 45.455 11.51 11.51 46.84 4.57
2648 2729 8.768501 TTATTAGAGATTGGAGAGCTTACTGA 57.231 34.615 0.00 0.00 0.00 3.41
2700 2781 3.302347 CTCTGGACCACTCGCCACC 62.302 68.421 0.00 0.00 0.00 4.61
2796 2878 2.360350 CTGAGGCAATGGCGGTGT 60.360 61.111 0.00 0.00 42.47 4.16
2926 3010 6.128742 GGTTTTGTAACGATCAATACAGACGT 60.129 38.462 7.43 0.00 38.81 4.34
2943 3027 1.621814 CCTCCCGACTCAGGTTTTGTA 59.378 52.381 0.00 0.00 0.00 2.41
3118 3202 2.694109 GAGACCGGGCTGTTATAGTCTT 59.306 50.000 19.29 0.00 34.84 3.01
3148 3232 6.246163 AGGATATCGTATGTGATGAGTGGTA 58.754 40.000 0.00 0.00 0.00 3.25
3150 3234 5.651387 AGGATATCGTATGTGATGAGTGG 57.349 43.478 0.00 0.00 0.00 4.00
3152 3236 5.567623 GCCAAGGATATCGTATGTGATGAGT 60.568 44.000 0.00 0.00 0.00 3.41
3197 3281 1.770658 TCCTGGACTTCCATATGCCAG 59.229 52.381 15.67 15.67 46.46 4.85
3252 3336 6.974853 GTGCATGCACTGATGGAATGTTCC 62.975 50.000 37.48 10.51 44.05 3.62
3255 3339 1.475280 GTGCATGCACTGATGGAATGT 59.525 47.619 37.48 0.00 43.12 2.71
3285 3369 2.037511 CCAGATTTGCTTGGCCAAAGAA 59.962 45.455 20.91 14.20 38.03 2.52
3391 3475 8.644374 AAGCTGAATGTATTACCCAAAGTTAA 57.356 30.769 0.00 0.00 0.00 2.01
3430 3514 5.163622 CCTCAATTGATAATCAGCGGTTGTT 60.164 40.000 8.96 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.