Multiple sequence alignment - TraesCS1B01G100800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G100800 chr1B 100.000 5345 0 0 1 5345 110603203 110608547 0.000000e+00 9871.0
1 TraesCS1B01G100800 chr1B 96.703 91 3 0 673 763 110603206 110603296 9.270000e-33 152.0
2 TraesCS1B01G100800 chr1B 96.703 91 3 0 4 94 110603875 110603965 9.270000e-33 152.0
3 TraesCS1B01G100800 chr1B 90.826 109 9 1 4039 4147 173123366 173123473 1.550000e-30 145.0
4 TraesCS1B01G100800 chr1B 95.312 64 3 0 263 326 110603405 110603468 9.470000e-18 102.0
5 TraesCS1B01G100800 chr1D 96.261 2113 60 9 1504 3602 69093806 69095913 0.000000e+00 3446.0
6 TraesCS1B01G100800 chr1D 97.123 730 14 4 781 1505 69093031 69093758 0.000000e+00 1225.0
7 TraesCS1B01G100800 chr1D 90.840 786 54 4 4 789 69091004 69091771 0.000000e+00 1037.0
8 TraesCS1B01G100800 chr1D 93.816 663 23 5 4142 4786 69096712 69097374 0.000000e+00 981.0
9 TraesCS1B01G100800 chr1D 90.835 611 55 1 94 703 68903586 68904196 0.000000e+00 817.0
10 TraesCS1B01G100800 chr1D 91.339 381 30 3 383 763 69090715 69091092 7.940000e-143 518.0
11 TraesCS1B01G100800 chr1D 97.209 215 4 2 3593 3806 69096080 69096293 3.930000e-96 363.0
12 TraesCS1B01G100800 chr1D 93.421 228 15 0 32 259 69090491 69090718 6.630000e-89 339.0
13 TraesCS1B01G100800 chr1D 98.230 113 2 0 3945 4057 69096596 69096708 1.170000e-46 198.0
14 TraesCS1B01G100800 chr1D 87.671 146 17 1 118 262 391362389 391362244 9.210000e-38 169.0
15 TraesCS1B01G100800 chr1D 86.184 152 20 1 112 262 463975248 463975399 4.280000e-36 163.0
16 TraesCS1B01G100800 chr1D 95.604 91 4 0 4 94 69091655 69091745 4.310000e-31 147.0
17 TraesCS1B01G100800 chr1D 96.923 65 2 0 263 327 68903695 68903759 5.660000e-20 110.0
18 TraesCS1B01G100800 chr1D 95.000 60 3 0 267 326 69091193 69091252 1.580000e-15 95.3
19 TraesCS1B01G100800 chr1D 89.796 49 3 2 5094 5142 69097776 69097822 1.610000e-05 62.1
20 TraesCS1B01G100800 chr1A 92.831 1911 101 24 1504 3394 67683885 67685779 0.000000e+00 2737.0
21 TraesCS1B01G100800 chr1A 97.119 729 13 3 781 1505 67683113 67683837 0.000000e+00 1223.0
22 TraesCS1B01G100800 chr1A 90.573 785 65 5 4 782 67682058 67682839 0.000000e+00 1031.0
23 TraesCS1B01G100800 chr1A 92.613 555 23 7 4142 4683 67686762 67687311 0.000000e+00 782.0
24 TraesCS1B01G100800 chr1A 93.990 416 15 5 3400 3809 67685958 67686369 5.880000e-174 621.0
25 TraesCS1B01G100800 chr1A 91.860 258 20 1 506 763 67681891 67682147 5.090000e-95 359.0
26 TraesCS1B01G100800 chr1A 95.588 136 6 0 3922 4057 67686623 67686758 9.010000e-53 219.0
27 TraesCS1B01G100800 chr1A 89.916 119 6 2 3807 3925 67686435 67686547 1.200000e-31 148.0
28 TraesCS1B01G100800 chr1A 94.444 90 5 0 4 93 67682730 67682819 7.220000e-29 139.0
29 TraesCS1B01G100800 chr1A 95.238 63 3 0 263 325 67682255 67682317 3.410000e-17 100.0
30 TraesCS1B01G100800 chr2D 98.864 176 2 0 1972 2147 604429135 604428960 1.120000e-81 315.0
31 TraesCS1B01G100800 chr2D 90.244 123 12 0 3400 3522 24923641 24923763 1.540000e-35 161.0
32 TraesCS1B01G100800 chrUn 98.295 176 3 0 1972 2147 171037309 171037484 5.200000e-80 309.0
33 TraesCS1B01G100800 chrUn 98.295 176 3 0 1972 2147 374272936 374273111 5.200000e-80 309.0
34 TraesCS1B01G100800 chrUn 88.824 170 13 3 2738 2902 34252016 34251848 2.520000e-48 204.0
35 TraesCS1B01G100800 chrUn 88.824 170 13 3 2738 2902 309430501 309430333 2.520000e-48 204.0
36 TraesCS1B01G100800 chrUn 85.535 159 22 1 93 251 466393371 466393214 1.190000e-36 165.0
37 TraesCS1B01G100800 chr7D 98.295 176 3 0 1972 2147 381943959 381943784 5.200000e-80 309.0
38 TraesCS1B01G100800 chr7D 97.802 91 2 0 4055 4145 483929695 483929605 1.990000e-34 158.0
39 TraesCS1B01G100800 chr5D 98.295 176 3 0 1972 2147 528297785 528297960 5.200000e-80 309.0
40 TraesCS1B01G100800 chr5D 90.179 112 8 3 4029 4140 277238911 277239019 5.580000e-30 143.0
41 TraesCS1B01G100800 chr3D 98.295 176 3 0 1972 2147 602851349 602851174 5.200000e-80 309.0
42 TraesCS1B01G100800 chr3D 84.112 214 22 8 3082 3285 690249 690460 4.220000e-46 196.0
43 TraesCS1B01G100800 chr3D 91.736 121 10 0 3401 3521 250915986 250916106 9.210000e-38 169.0
44 TraesCS1B01G100800 chr3D 87.671 146 17 1 118 262 571896593 571896448 9.210000e-38 169.0
45 TraesCS1B01G100800 chr3A 97.727 176 4 0 1972 2147 718990426 718990251 2.420000e-78 303.0
46 TraesCS1B01G100800 chr3A 87.879 165 20 0 2738 2902 8941283 8941119 1.520000e-45 195.0
47 TraesCS1B01G100800 chr3A 93.651 126 8 0 3275 3400 249861658 249861533 7.070000e-44 189.0
48 TraesCS1B01G100800 chr3A 90.323 124 12 0 3401 3524 333327893 333327770 4.280000e-36 163.0
49 TraesCS1B01G100800 chr3B 89.634 164 11 3 2738 2896 5888054 5888216 2.520000e-48 204.0
50 TraesCS1B01G100800 chr3B 91.129 124 11 0 3401 3524 312149353 312149476 9.210000e-38 169.0
51 TraesCS1B01G100800 chr3B 89.313 131 12 2 3400 3529 703031375 703031246 4.280000e-36 163.0
52 TraesCS1B01G100800 chr2A 95.935 123 5 0 3272 3394 414294296 414294418 3.260000e-47 200.0
53 TraesCS1B01G100800 chr7A 95.082 122 6 0 3273 3394 5486258 5486379 5.460000e-45 193.0
54 TraesCS1B01G100800 chr7A 93.077 130 8 1 3272 3400 534403562 534403433 7.070000e-44 189.0
55 TraesCS1B01G100800 chr5A 93.750 128 6 2 3269 3394 536775163 536775290 1.960000e-44 191.0
56 TraesCS1B01G100800 chr5A 91.509 106 7 2 4039 4143 709722584 709722480 1.550000e-30 145.0
57 TraesCS1B01G100800 chr4A 94.355 124 6 1 3272 3394 592264882 592264759 7.070000e-44 189.0
58 TraesCS1B01G100800 chr4A 94.355 124 6 1 3272 3394 592602300 592602177 7.070000e-44 189.0
59 TraesCS1B01G100800 chr4A 94.355 124 6 1 3272 3394 592891420 592891297 7.070000e-44 189.0
60 TraesCS1B01G100800 chr4B 87.671 146 17 1 118 262 150987746 150987601 9.210000e-38 169.0
61 TraesCS1B01G100800 chr6B 89.683 126 13 0 3400 3525 414357929 414358054 1.540000e-35 161.0
62 TraesCS1B01G100800 chr6B 94.792 96 5 0 4054 4149 462032318 462032223 3.330000e-32 150.0
63 TraesCS1B01G100800 chr6B 82.203 118 19 2 396 513 695911630 695911745 3.410000e-17 100.0
64 TraesCS1B01G100800 chr6A 97.826 92 2 0 4051 4142 287115360 287115451 5.540000e-35 159.0
65 TraesCS1B01G100800 chr6A 97.753 89 2 0 4056 4144 591741946 591742034 2.580000e-33 154.0
66 TraesCS1B01G100800 chr6A 88.983 118 9 3 4051 4166 89971065 89971180 5.580000e-30 143.0
67 TraesCS1B01G100800 chr6D 88.462 130 15 0 3400 3529 15375728 15375599 1.990000e-34 158.0
68 TraesCS1B01G100800 chr7B 92.308 104 7 1 4037 4140 726227080 726226978 4.310000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G100800 chr1B 110603203 110608547 5344 False 9871.000000 9871 100.000000 1 5345 1 chr1B.!!$F1 5344
1 TraesCS1B01G100800 chr1D 69090491 69097822 7331 False 764.672727 3446 94.421727 4 5142 11 chr1D.!!$F3 5138
2 TraesCS1B01G100800 chr1D 68903586 68904196 610 False 463.500000 817 93.879000 94 703 2 chr1D.!!$F2 609
3 TraesCS1B01G100800 chr1A 67681891 67687311 5420 False 735.900000 2737 93.417200 4 4683 10 chr1A.!!$F1 4679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 993 0.257905 TCGAAGGAGGGCTGCTACTA 59.742 55.000 0.00 0.0 0.00 1.82 F
514 1026 1.203300 TCACTGGAGAGGAATCACCCA 60.203 52.381 0.00 0.0 40.05 4.51 F
1470 3265 1.610038 TGTCAAGGCACTGCAAAGATG 59.390 47.619 2.82 0.0 40.86 2.90 F
3031 4896 2.249844 TTTGTGAGAACCTTCGGGAC 57.750 50.000 0.00 0.0 38.77 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 3553 2.584791 CAGAAAACGAATCCTTTGGCG 58.415 47.619 0.0 0.0 0.00 5.69 R
2024 3883 2.725221 ATGGTCTGCTTGGGAAGATC 57.275 50.000 0.0 0.0 28.49 2.75 R
3269 5134 1.263217 CCAACCAAACACGCTGTAGAC 59.737 52.381 0.0 0.0 0.00 2.59 R
4837 7296 0.093535 CAGCAATGTAGCGACGTGTG 59.906 55.000 0.0 0.0 40.15 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 531 0.806868 CACCTTCTCGCATTGCACAT 59.193 50.000 9.69 0.00 0.00 3.21
160 671 0.685097 CGACTTTGTCCCCTCCTTCA 59.315 55.000 0.00 0.00 0.00 3.02
236 748 0.811281 GGACAAAAGAGAATGGGGCG 59.189 55.000 0.00 0.00 0.00 6.13
277 789 2.846193 ACAAAACTACATGAGCCACGT 58.154 42.857 0.00 0.00 0.00 4.49
290 802 2.612212 GAGCCACGTGACAAAAGAGAAA 59.388 45.455 19.30 0.00 0.00 2.52
335 847 7.402071 TGAAGGGTACAAAACTATCCTCATACT 59.598 37.037 0.00 0.00 0.00 2.12
378 890 1.837051 TCACTGGGGAACGCTCAGT 60.837 57.895 0.00 0.00 43.80 3.41
386 898 0.520827 GGAACGCTCAGTCGAGTACG 60.521 60.000 7.67 7.67 41.71 3.67
439 951 3.900892 ATCCGTACCGCTCGCTGG 61.901 66.667 0.00 0.00 0.00 4.85
443 955 4.436998 GTACCGCTCGCTGGCTGT 62.437 66.667 0.00 1.38 34.33 4.40
456 968 4.980805 GCTGTCGGCCCAACACGA 62.981 66.667 0.00 0.00 36.68 4.35
460 972 2.181521 GTCGGCCCAACACGAAACA 61.182 57.895 0.00 0.00 41.17 2.83
477 989 2.284258 ACTCGAAGGAGGGCTGCT 60.284 61.111 0.00 0.00 44.93 4.24
481 993 0.257905 TCGAAGGAGGGCTGCTACTA 59.742 55.000 0.00 0.00 0.00 1.82
514 1026 1.203300 TCACTGGAGAGGAATCACCCA 60.203 52.381 0.00 0.00 40.05 4.51
522 1034 1.675641 GGAATCACCCACGCTGCTT 60.676 57.895 0.00 0.00 0.00 3.91
525 1037 3.848301 ATCACCCACGCTGCTTGCA 62.848 57.895 0.00 0.00 43.06 4.08
623 1135 3.197766 TCAGCCTCAAGATGTTTCCGTAT 59.802 43.478 0.00 0.00 0.00 3.06
634 1146 5.763698 AGATGTTTCCGTATCGATGTAGAGA 59.236 40.000 8.54 0.00 0.00 3.10
646 1158 3.490933 CGATGTAGAGAATTCTTGCGGGA 60.491 47.826 9.87 0.00 34.79 5.14
662 1175 3.256879 TGCGGGATTCAGTTTGCAATTTA 59.743 39.130 0.00 0.00 0.00 1.40
670 1183 8.416329 GGATTCAGTTTGCAATTTATACATCCT 58.584 33.333 0.00 0.00 0.00 3.24
722 1245 7.337689 TCCAATGATACAAGATCAAGTTTCCAG 59.662 37.037 0.00 0.00 0.00 3.86
776 1299 3.319137 GCACTCTATGCGATTATCCCA 57.681 47.619 0.00 0.00 46.55 4.37
849 2640 4.876107 CGTGTTCTTGTAGGGATTAGCATT 59.124 41.667 0.00 0.00 0.00 3.56
886 2677 9.784531 CTATATATGTCAAGGGTGTTTCTGAAT 57.215 33.333 0.00 0.00 0.00 2.57
1413 3208 8.697292 GGTAACCTAGTATGTTCTCTTCTTCAT 58.303 37.037 0.00 0.00 0.00 2.57
1470 3265 1.610038 TGTCAAGGCACTGCAAAGATG 59.390 47.619 2.82 0.00 40.86 2.90
1487 3282 4.222124 AGATGCCGTCTTGATAGGTTTT 57.778 40.909 0.00 0.00 31.47 2.43
1666 3516 6.873997 TCGTTTCATCCTACATGTTAGTGAT 58.126 36.000 2.30 0.00 0.00 3.06
1707 3557 4.202202 ACAATTCTTTTTGGATGTTCGCCA 60.202 37.500 0.00 0.00 0.00 5.69
1708 3558 4.599047 ATTCTTTTTGGATGTTCGCCAA 57.401 36.364 0.00 0.00 43.31 4.52
1797 3654 7.117523 TGGGATGATTAATTTTTGTTTGCGAAG 59.882 33.333 0.00 0.00 0.00 3.79
1912 3770 6.016555 AGGGTGTTGCCTTCTGTATTATTTT 58.983 36.000 0.00 0.00 37.43 1.82
2024 3883 3.990959 ACCTTAGAGCTTTCTTCCCTG 57.009 47.619 0.00 0.00 0.00 4.45
2120 3979 2.851263 TTGGAGTGATGTGTGGTACC 57.149 50.000 4.43 4.43 0.00 3.34
2336 4196 2.653726 ACAACTGCATTTCTGGACACA 58.346 42.857 0.00 0.00 0.00 3.72
2337 4197 3.023119 ACAACTGCATTTCTGGACACAA 58.977 40.909 0.00 0.00 0.00 3.33
2588 4448 5.897250 ACCACCTTTAGTCCTTCAATTTTGT 59.103 36.000 0.00 0.00 0.00 2.83
3003 4868 3.181445 TGACAGCTACAGGTTTGATTGGT 60.181 43.478 0.00 0.00 0.00 3.67
3027 4892 5.411361 TCCAACATATTTGTGAGAACCTTCG 59.589 40.000 0.00 0.00 35.83 3.79
3031 4896 2.249844 TTTGTGAGAACCTTCGGGAC 57.750 50.000 0.00 0.00 38.77 4.46
3044 4909 6.248569 ACCTTCGGGACATAGTGATAAAAT 57.751 37.500 0.00 0.00 38.77 1.82
3046 4911 6.099845 ACCTTCGGGACATAGTGATAAAATCT 59.900 38.462 0.00 0.00 38.77 2.40
3377 5254 3.510459 GGGATTGGGAATTCATAAGGGG 58.490 50.000 7.93 0.00 0.00 4.79
3457 5507 6.070656 GGGAATAAAATGACTCATCCCATGA 58.929 40.000 7.91 0.00 43.65 3.07
3459 5509 6.015940 GGAATAAAATGACTCATCCCATGACC 60.016 42.308 0.00 0.00 35.06 4.02
3467 5517 3.136077 ACTCATCCCATGACCAATCTCAG 59.864 47.826 0.00 0.00 35.06 3.35
3490 5540 7.282675 TCAGTAGAACTCCCTACTCTAAATTCG 59.717 40.741 0.00 0.00 45.39 3.34
3501 5551 7.202066 CCCTACTCTAAATTCGAATTCCCCTTA 60.202 40.741 22.93 10.77 0.00 2.69
3782 6014 5.817296 GGCTGGTTTTCAAGTTCTTGAAATT 59.183 36.000 28.98 0.00 46.47 1.82
3814 6114 0.750249 GGGTTGGGGTTCACAAGTTG 59.250 55.000 0.00 0.00 0.00 3.16
3831 6131 6.200854 CACAAGTTGTCCTTTATTCCTTTTGC 59.799 38.462 5.27 0.00 0.00 3.68
3833 6133 6.670695 AGTTGTCCTTTATTCCTTTTGCAT 57.329 33.333 0.00 0.00 0.00 3.96
3851 6151 4.072131 TGCATTCTCCCAAACAAGTAGTC 58.928 43.478 0.00 0.00 0.00 2.59
3852 6152 3.440522 GCATTCTCCCAAACAAGTAGTCC 59.559 47.826 0.00 0.00 0.00 3.85
3853 6153 3.782656 TTCTCCCAAACAAGTAGTCCC 57.217 47.619 0.00 0.00 0.00 4.46
3855 6155 1.702957 CTCCCAAACAAGTAGTCCCCA 59.297 52.381 0.00 0.00 0.00 4.96
3857 6157 1.546998 CCCAAACAAGTAGTCCCCACC 60.547 57.143 0.00 0.00 0.00 4.61
3858 6158 1.546998 CCAAACAAGTAGTCCCCACCC 60.547 57.143 0.00 0.00 0.00 4.61
3859 6159 0.775542 AAACAAGTAGTCCCCACCCC 59.224 55.000 0.00 0.00 0.00 4.95
3860 6160 1.138228 AACAAGTAGTCCCCACCCCC 61.138 60.000 0.00 0.00 0.00 5.40
4061 6457 9.862149 TTATTTCTTCCAATATTTCCTACTCCC 57.138 33.333 0.00 0.00 0.00 4.30
4062 6458 7.525158 TTTCTTCCAATATTTCCTACTCCCT 57.475 36.000 0.00 0.00 0.00 4.20
4063 6459 6.749036 TCTTCCAATATTTCCTACTCCCTC 57.251 41.667 0.00 0.00 0.00 4.30
4064 6460 5.607171 TCTTCCAATATTTCCTACTCCCTCC 59.393 44.000 0.00 0.00 0.00 4.30
4065 6461 3.901844 TCCAATATTTCCTACTCCCTCCG 59.098 47.826 0.00 0.00 0.00 4.63
4066 6462 3.646637 CCAATATTTCCTACTCCCTCCGT 59.353 47.826 0.00 0.00 0.00 4.69
4067 6463 4.836736 CCAATATTTCCTACTCCCTCCGTA 59.163 45.833 0.00 0.00 0.00 4.02
4068 6464 5.306160 CCAATATTTCCTACTCCCTCCGTAA 59.694 44.000 0.00 0.00 0.00 3.18
4069 6465 6.183361 CCAATATTTCCTACTCCCTCCGTAAA 60.183 42.308 0.00 0.00 0.00 2.01
4070 6466 4.750021 ATTTCCTACTCCCTCCGTAAAC 57.250 45.455 0.00 0.00 0.00 2.01
4071 6467 3.463048 TTCCTACTCCCTCCGTAAACT 57.537 47.619 0.00 0.00 0.00 2.66
4072 6468 4.591321 TTCCTACTCCCTCCGTAAACTA 57.409 45.455 0.00 0.00 0.00 2.24
4073 6469 4.591321 TCCTACTCCCTCCGTAAACTAA 57.409 45.455 0.00 0.00 0.00 2.24
4074 6470 5.134725 TCCTACTCCCTCCGTAAACTAAT 57.865 43.478 0.00 0.00 0.00 1.73
4075 6471 6.266131 TCCTACTCCCTCCGTAAACTAATA 57.734 41.667 0.00 0.00 0.00 0.98
4076 6472 6.856757 TCCTACTCCCTCCGTAAACTAATAT 58.143 40.000 0.00 0.00 0.00 1.28
4077 6473 7.988937 TCCTACTCCCTCCGTAAACTAATATA 58.011 38.462 0.00 0.00 0.00 0.86
4078 6474 8.448008 TCCTACTCCCTCCGTAAACTAATATAA 58.552 37.037 0.00 0.00 0.00 0.98
4079 6475 8.738106 CCTACTCCCTCCGTAAACTAATATAAG 58.262 40.741 0.00 0.00 0.00 1.73
4080 6476 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
4081 6477 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4082 6478 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4083 6479 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
4084 6480 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4085 6481 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4086 6482 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
4087 6483 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
4088 6484 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4089 6485 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4165 6561 3.632145 ACCTTGACGATGCTTTTCTTGTT 59.368 39.130 0.00 0.00 0.00 2.83
4344 6740 4.473559 CCACCAAGGAGAAGATACCCTTAA 59.526 45.833 0.00 0.00 41.22 1.85
4346 6742 5.189934 CACCAAGGAGAAGATACCCTTAAGT 59.810 44.000 0.97 0.00 38.16 2.24
4522 6921 0.595095 GGCTTGCCAGTTTGAGACAG 59.405 55.000 6.79 0.00 0.00 3.51
4585 6984 4.540359 ATGTTTGTGCCACAATTATGCT 57.460 36.364 11.67 0.00 38.00 3.79
4687 7101 6.750039 TGTTTTTCTTTTCTTCACTTAAGCGG 59.250 34.615 1.29 0.00 34.97 5.52
4691 7105 2.543777 TTCTTCACTTAAGCGGCACT 57.456 45.000 1.45 0.00 34.97 4.40
4697 7111 1.128692 CACTTAAGCGGCACTTACAGC 59.871 52.381 1.45 0.00 40.63 4.40
4704 7118 0.724549 CGGCACTTACAGCGCAAATA 59.275 50.000 11.47 0.00 0.00 1.40
4721 7135 5.615544 CGCAAATAGTTTTGAGTGAGTCCAG 60.616 44.000 2.78 0.00 44.11 3.86
4727 7141 3.402628 TTTGAGTGAGTCCAGCTAACC 57.597 47.619 0.00 0.00 0.00 2.85
4751 7166 1.207329 GTCCAACTAGGTAGCAGGGTG 59.793 57.143 0.00 0.00 39.02 4.61
4752 7167 1.078159 TCCAACTAGGTAGCAGGGTGA 59.922 52.381 0.00 0.00 39.02 4.02
4775 7190 2.851263 TGCTCGTCAGTTTAATGGGT 57.149 45.000 0.00 0.00 0.00 4.51
4779 7194 1.066716 TCGTCAGTTTAATGGGTCCCG 60.067 52.381 2.65 0.00 0.00 5.14
4782 7197 1.066716 TCAGTTTAATGGGTCCCGTCG 60.067 52.381 2.08 0.00 0.00 5.12
4786 7201 3.988050 TAATGGGTCCCGTCGGGCT 62.988 63.158 26.42 7.35 43.94 5.19
4819 7278 2.368594 CCTAGCTGGTCTCCCCCA 59.631 66.667 0.00 0.00 0.00 4.96
4821 7280 1.627297 CCTAGCTGGTCTCCCCCAAC 61.627 65.000 0.00 0.00 33.07 3.77
4822 7281 0.909610 CTAGCTGGTCTCCCCCAACA 60.910 60.000 0.00 0.00 33.07 3.33
4823 7282 0.474854 TAGCTGGTCTCCCCCAACAA 60.475 55.000 0.00 0.00 33.07 2.83
4824 7283 1.142688 AGCTGGTCTCCCCCAACAAT 61.143 55.000 0.00 0.00 33.07 2.71
4825 7284 0.681243 GCTGGTCTCCCCCAACAATC 60.681 60.000 0.00 0.00 33.07 2.67
4826 7285 0.392998 CTGGTCTCCCCCAACAATCG 60.393 60.000 0.00 0.00 33.07 3.34
4828 7287 0.037734 GGTCTCCCCCAACAATCGTT 59.962 55.000 0.00 0.00 35.01 3.85
4837 7296 3.957383 AACAATCGTTGGCCAACAC 57.043 47.368 39.91 21.89 41.20 3.32
4842 7347 1.781025 ATCGTTGGCCAACACACACG 61.781 55.000 39.91 29.17 41.20 4.49
4844 7349 1.063488 GTTGGCCAACACACACGTC 59.937 57.895 37.95 12.20 40.84 4.34
4851 7356 1.136690 CAACACACACGTCGCTACAT 58.863 50.000 0.00 0.00 0.00 2.29
4870 7375 4.030452 GCTGTCGTGTGCTTGCCC 62.030 66.667 0.00 0.00 0.00 5.36
4901 7413 2.950194 GCTCGTTCGCTCGTAGCC 60.950 66.667 2.00 0.00 38.18 3.93
4951 7529 2.572647 CACCGTCGTCGTCGTAGC 60.573 66.667 10.76 0.00 38.33 3.58
4956 7534 1.226323 GTCGTCGTCGTAGCATGCT 60.226 57.895 25.99 25.99 38.33 3.79
5028 7608 2.954611 GCCGTCTTGGGTTGAAGC 59.045 61.111 0.00 0.00 38.63 3.86
5029 7609 1.600916 GCCGTCTTGGGTTGAAGCT 60.601 57.895 0.00 0.00 38.63 3.74
5030 7610 1.172812 GCCGTCTTGGGTTGAAGCTT 61.173 55.000 0.00 0.00 38.63 3.74
5031 7611 0.593128 CCGTCTTGGGTTGAAGCTTG 59.407 55.000 2.10 0.00 0.00 4.01
5032 7612 0.593128 CGTCTTGGGTTGAAGCTTGG 59.407 55.000 2.10 0.00 0.00 3.61
5033 7613 1.692411 GTCTTGGGTTGAAGCTTGGT 58.308 50.000 2.10 0.00 0.00 3.67
5034 7614 2.031870 GTCTTGGGTTGAAGCTTGGTT 58.968 47.619 2.10 0.00 0.00 3.67
5035 7615 2.031120 TCTTGGGTTGAAGCTTGGTTG 58.969 47.619 2.10 0.00 0.00 3.77
5036 7616 2.031120 CTTGGGTTGAAGCTTGGTTGA 58.969 47.619 2.10 0.00 0.00 3.18
5037 7617 2.151502 TGGGTTGAAGCTTGGTTGAA 57.848 45.000 2.10 0.00 0.00 2.69
5038 7618 2.461695 TGGGTTGAAGCTTGGTTGAAA 58.538 42.857 2.10 0.00 0.00 2.69
5039 7619 2.167487 TGGGTTGAAGCTTGGTTGAAAC 59.833 45.455 2.10 0.00 0.00 2.78
5040 7620 2.167487 GGGTTGAAGCTTGGTTGAAACA 59.833 45.455 2.10 0.00 0.00 2.83
5041 7621 3.181466 GGGTTGAAGCTTGGTTGAAACAT 60.181 43.478 2.10 0.00 0.00 2.71
5042 7622 4.441792 GGTTGAAGCTTGGTTGAAACATT 58.558 39.130 2.10 0.00 0.00 2.71
5043 7623 4.875536 GGTTGAAGCTTGGTTGAAACATTT 59.124 37.500 2.10 0.00 0.00 2.32
5044 7624 5.353956 GGTTGAAGCTTGGTTGAAACATTTT 59.646 36.000 2.10 0.00 0.00 1.82
5045 7625 6.456853 GGTTGAAGCTTGGTTGAAACATTTTC 60.457 38.462 2.10 0.00 0.00 2.29
5046 7626 5.728471 TGAAGCTTGGTTGAAACATTTTCA 58.272 33.333 2.10 0.00 0.00 2.69
5047 7627 5.811613 TGAAGCTTGGTTGAAACATTTTCAG 59.188 36.000 2.10 0.00 0.00 3.02
5048 7628 5.596836 AGCTTGGTTGAAACATTTTCAGA 57.403 34.783 1.87 0.00 0.00 3.27
5049 7629 5.976458 AGCTTGGTTGAAACATTTTCAGAA 58.024 33.333 1.87 0.00 0.00 3.02
5050 7630 6.044682 AGCTTGGTTGAAACATTTTCAGAAG 58.955 36.000 1.87 6.96 0.00 2.85
5051 7631 5.277011 GCTTGGTTGAAACATTTTCAGAAGC 60.277 40.000 17.35 17.35 33.76 3.86
5052 7632 4.692228 TGGTTGAAACATTTTCAGAAGCC 58.308 39.130 1.87 4.77 0.00 4.35
5053 7633 3.735746 GGTTGAAACATTTTCAGAAGCCG 59.264 43.478 1.87 0.00 0.00 5.52
5054 7634 3.641437 TGAAACATTTTCAGAAGCCGG 57.359 42.857 0.00 0.00 0.00 6.13
5055 7635 2.955660 TGAAACATTTTCAGAAGCCGGT 59.044 40.909 1.90 0.00 0.00 5.28
5056 7636 3.383185 TGAAACATTTTCAGAAGCCGGTT 59.617 39.130 1.90 0.00 0.00 4.44
5057 7637 3.369546 AACATTTTCAGAAGCCGGTTG 57.630 42.857 1.90 0.00 0.00 3.77
5058 7638 2.306847 ACATTTTCAGAAGCCGGTTGT 58.693 42.857 1.90 0.00 0.00 3.32
5059 7639 3.482436 ACATTTTCAGAAGCCGGTTGTA 58.518 40.909 1.90 0.00 0.00 2.41
5060 7640 3.502211 ACATTTTCAGAAGCCGGTTGTAG 59.498 43.478 1.90 0.00 0.00 2.74
5061 7641 1.519408 TTTCAGAAGCCGGTTGTAGC 58.481 50.000 1.90 0.00 0.00 3.58
5062 7642 0.685097 TTCAGAAGCCGGTTGTAGCT 59.315 50.000 1.90 0.00 42.40 3.32
5067 7647 2.271944 AAGCCGGTTGTAGCTTTCTT 57.728 45.000 1.90 0.00 46.99 2.52
5068 7648 1.523758 AGCCGGTTGTAGCTTTCTTG 58.476 50.000 1.90 0.00 35.22 3.02
5069 7649 0.521735 GCCGGTTGTAGCTTTCTTGG 59.478 55.000 1.90 0.00 0.00 3.61
5070 7650 0.521735 CCGGTTGTAGCTTTCTTGGC 59.478 55.000 0.00 0.00 0.00 4.52
5071 7651 0.521735 CGGTTGTAGCTTTCTTGGCC 59.478 55.000 0.00 0.00 0.00 5.36
5072 7652 0.521735 GGTTGTAGCTTTCTTGGCCG 59.478 55.000 0.00 0.00 0.00 6.13
5073 7653 1.235724 GTTGTAGCTTTCTTGGCCGT 58.764 50.000 0.00 0.00 0.00 5.68
5074 7654 1.607148 GTTGTAGCTTTCTTGGCCGTT 59.393 47.619 0.00 0.00 0.00 4.44
5075 7655 1.234821 TGTAGCTTTCTTGGCCGTTG 58.765 50.000 0.00 0.00 0.00 4.10
5076 7656 0.521735 GTAGCTTTCTTGGCCGTTGG 59.478 55.000 0.00 0.00 0.00 3.77
5077 7657 0.109723 TAGCTTTCTTGGCCGTTGGT 59.890 50.000 0.00 0.00 0.00 3.67
5078 7658 0.755327 AGCTTTCTTGGCCGTTGGTT 60.755 50.000 0.00 0.00 0.00 3.67
5079 7659 0.597377 GCTTTCTTGGCCGTTGGTTG 60.597 55.000 0.00 0.00 0.00 3.77
5080 7660 0.597377 CTTTCTTGGCCGTTGGTTGC 60.597 55.000 0.00 0.00 0.00 4.17
5081 7661 1.323271 TTTCTTGGCCGTTGGTTGCA 61.323 50.000 0.00 0.00 0.00 4.08
5082 7662 1.112315 TTCTTGGCCGTTGGTTGCAT 61.112 50.000 0.00 0.00 0.00 3.96
5083 7663 1.080569 CTTGGCCGTTGGTTGCATC 60.081 57.895 0.00 0.00 0.00 3.91
5084 7664 2.490993 CTTGGCCGTTGGTTGCATCC 62.491 60.000 6.88 6.88 0.00 3.51
5085 7665 2.676471 GGCCGTTGGTTGCATCCT 60.676 61.111 14.81 0.00 0.00 3.24
5086 7666 2.275380 GGCCGTTGGTTGCATCCTT 61.275 57.895 14.81 0.00 0.00 3.36
5087 7667 1.665442 GCCGTTGGTTGCATCCTTT 59.335 52.632 14.81 0.00 0.00 3.11
5088 7668 0.033366 GCCGTTGGTTGCATCCTTTT 59.967 50.000 14.81 0.00 0.00 2.27
5089 7669 1.271102 GCCGTTGGTTGCATCCTTTTA 59.729 47.619 14.81 0.00 0.00 1.52
5090 7670 2.094234 GCCGTTGGTTGCATCCTTTTAT 60.094 45.455 14.81 0.00 0.00 1.40
5091 7671 3.510719 CCGTTGGTTGCATCCTTTTATG 58.489 45.455 14.81 3.92 0.00 1.90
5092 7672 3.510719 CGTTGGTTGCATCCTTTTATGG 58.489 45.455 14.81 0.00 0.00 2.74
5093 7673 3.056891 CGTTGGTTGCATCCTTTTATGGT 60.057 43.478 14.81 0.00 0.00 3.55
5094 7674 4.560513 CGTTGGTTGCATCCTTTTATGGTT 60.561 41.667 14.81 0.00 0.00 3.67
5095 7675 4.533919 TGGTTGCATCCTTTTATGGTTG 57.466 40.909 14.81 0.00 0.00 3.77
5097 7677 3.261580 GTTGCATCCTTTTATGGTTGCC 58.738 45.455 12.28 0.00 46.62 4.52
5098 7678 2.818921 TGCATCCTTTTATGGTTGCCT 58.181 42.857 12.28 0.00 46.62 4.75
5099 7679 2.760092 TGCATCCTTTTATGGTTGCCTC 59.240 45.455 12.28 0.00 46.62 4.70
5128 7708 5.102313 CGGTTGAAACTTTTTCAGAAGCTT 58.898 37.500 0.00 0.00 0.00 3.74
5132 7712 6.949578 TGAAACTTTTTCAGAAGCTTGTTG 57.050 33.333 2.10 1.98 0.00 3.33
5133 7713 6.454795 TGAAACTTTTTCAGAAGCTTGTTGT 58.545 32.000 2.10 0.00 0.00 3.32
5145 7725 3.544356 GCTTGTTGTAGCTTTCTCACC 57.456 47.619 0.00 0.00 38.15 4.02
5146 7726 2.226674 GCTTGTTGTAGCTTTCTCACCC 59.773 50.000 0.00 0.00 38.15 4.61
5147 7727 2.163818 TGTTGTAGCTTTCTCACCCG 57.836 50.000 0.00 0.00 0.00 5.28
5148 7728 0.796927 GTTGTAGCTTTCTCACCCGC 59.203 55.000 0.00 0.00 0.00 6.13
5149 7729 0.321298 TTGTAGCTTTCTCACCCGCC 60.321 55.000 0.00 0.00 0.00 6.13
5150 7730 1.810030 GTAGCTTTCTCACCCGCCG 60.810 63.158 0.00 0.00 0.00 6.46
5151 7731 3.014085 TAGCTTTCTCACCCGCCGG 62.014 63.158 0.00 0.00 0.00 6.13
5173 7753 2.713927 GTAGCATTTTACGACGCTGG 57.286 50.000 0.00 0.00 35.93 4.85
5174 7754 1.997606 GTAGCATTTTACGACGCTGGT 59.002 47.619 0.00 0.00 35.93 4.00
5175 7755 1.519408 AGCATTTTACGACGCTGGTT 58.481 45.000 0.00 0.00 32.33 3.67
5176 7756 1.196808 AGCATTTTACGACGCTGGTTG 59.803 47.619 0.00 0.00 32.33 3.77
5177 7757 1.602191 CATTTTACGACGCTGGTTGC 58.398 50.000 0.00 0.00 38.57 4.17
5178 7758 1.069568 CATTTTACGACGCTGGTTGCA 60.070 47.619 0.00 0.00 43.06 4.08
5179 7759 0.584396 TTTTACGACGCTGGTTGCAG 59.416 50.000 0.00 0.00 43.06 4.41
5180 7760 0.531090 TTTACGACGCTGGTTGCAGT 60.531 50.000 0.00 0.00 43.06 4.40
5181 7761 0.531090 TTACGACGCTGGTTGCAGTT 60.531 50.000 0.00 0.00 43.06 3.16
5182 7762 0.942410 TACGACGCTGGTTGCAGTTC 60.942 55.000 0.00 0.00 43.06 3.01
5183 7763 2.946762 GACGCTGGTTGCAGTTCC 59.053 61.111 0.00 0.00 43.06 3.62
5184 7764 1.598130 GACGCTGGTTGCAGTTCCT 60.598 57.895 6.30 0.00 43.06 3.36
5185 7765 1.569479 GACGCTGGTTGCAGTTCCTC 61.569 60.000 6.30 0.00 43.06 3.71
5186 7766 2.328099 CGCTGGTTGCAGTTCCTCC 61.328 63.158 6.30 0.00 43.06 4.30
5187 7767 2.328099 GCTGGTTGCAGTTCCTCCG 61.328 63.158 6.30 0.00 42.31 4.63
5188 7768 2.281484 TGGTTGCAGTTCCTCCGC 60.281 61.111 6.30 0.00 0.00 5.54
5189 7769 3.423154 GGTTGCAGTTCCTCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
5190 7770 2.665185 GTTGCAGTTCCTCCGCGT 60.665 61.111 4.92 0.00 0.00 6.01
5191 7771 2.664851 TTGCAGTTCCTCCGCGTG 60.665 61.111 4.92 0.00 0.00 5.34
5192 7772 3.158537 TTGCAGTTCCTCCGCGTGA 62.159 57.895 4.92 0.59 0.00 4.35
5193 7773 3.112709 GCAGTTCCTCCGCGTGAC 61.113 66.667 4.92 0.00 0.00 3.67
5194 7774 2.805353 CAGTTCCTCCGCGTGACG 60.805 66.667 4.92 0.00 43.15 4.35
5203 7783 2.954868 CGCGTGACGGTCATAGCC 60.955 66.667 25.13 10.11 38.44 3.93
5204 7784 2.585247 GCGTGACGGTCATAGCCC 60.585 66.667 22.56 7.68 30.39 5.19
5205 7785 2.106332 CGTGACGGTCATAGCCCC 59.894 66.667 14.78 0.00 0.00 5.80
5206 7786 2.423898 CGTGACGGTCATAGCCCCT 61.424 63.158 14.78 0.00 0.00 4.79
5207 7787 1.105167 CGTGACGGTCATAGCCCCTA 61.105 60.000 14.78 0.00 0.00 3.53
5208 7788 0.388294 GTGACGGTCATAGCCCCTAC 59.612 60.000 14.78 0.00 0.00 3.18
5209 7789 0.032912 TGACGGTCATAGCCCCTACA 60.033 55.000 6.76 0.00 0.00 2.74
5210 7790 1.339097 GACGGTCATAGCCCCTACAT 58.661 55.000 2.62 0.00 0.00 2.29
5211 7791 1.692519 GACGGTCATAGCCCCTACATT 59.307 52.381 2.62 0.00 0.00 2.71
5212 7792 1.692519 ACGGTCATAGCCCCTACATTC 59.307 52.381 0.00 0.00 0.00 2.67
5213 7793 1.971357 CGGTCATAGCCCCTACATTCT 59.029 52.381 0.00 0.00 0.00 2.40
5214 7794 2.028930 CGGTCATAGCCCCTACATTCTC 60.029 54.545 0.00 0.00 0.00 2.87
5215 7795 3.243724 GGTCATAGCCCCTACATTCTCT 58.756 50.000 0.00 0.00 0.00 3.10
5216 7796 3.007398 GGTCATAGCCCCTACATTCTCTG 59.993 52.174 0.00 0.00 0.00 3.35
5217 7797 3.898123 GTCATAGCCCCTACATTCTCTGA 59.102 47.826 0.00 0.00 0.00 3.27
5218 7798 4.530161 GTCATAGCCCCTACATTCTCTGAT 59.470 45.833 0.00 0.00 0.00 2.90
5219 7799 5.012561 GTCATAGCCCCTACATTCTCTGATT 59.987 44.000 0.00 0.00 0.00 2.57
5220 7800 5.247110 TCATAGCCCCTACATTCTCTGATTC 59.753 44.000 0.00 0.00 0.00 2.52
5221 7801 2.708325 AGCCCCTACATTCTCTGATTCC 59.292 50.000 0.00 0.00 0.00 3.01
5222 7802 2.708325 GCCCCTACATTCTCTGATTCCT 59.292 50.000 0.00 0.00 0.00 3.36
5223 7803 3.495806 GCCCCTACATTCTCTGATTCCTG 60.496 52.174 0.00 0.00 0.00 3.86
5224 7804 3.495806 CCCCTACATTCTCTGATTCCTGC 60.496 52.174 0.00 0.00 0.00 4.85
5225 7805 3.135348 CCCTACATTCTCTGATTCCTGCA 59.865 47.826 0.00 0.00 0.00 4.41
5226 7806 4.384537 CCCTACATTCTCTGATTCCTGCAA 60.385 45.833 0.00 0.00 0.00 4.08
5227 7807 5.188434 CCTACATTCTCTGATTCCTGCAAA 58.812 41.667 0.00 0.00 0.00 3.68
5228 7808 5.649395 CCTACATTCTCTGATTCCTGCAAAA 59.351 40.000 0.00 0.00 0.00 2.44
5229 7809 6.320672 CCTACATTCTCTGATTCCTGCAAAAT 59.679 38.462 0.00 0.00 0.00 1.82
5230 7810 7.500227 CCTACATTCTCTGATTCCTGCAAAATA 59.500 37.037 0.00 0.00 0.00 1.40
5231 7811 7.893124 ACATTCTCTGATTCCTGCAAAATAT 57.107 32.000 0.00 0.00 0.00 1.28
5232 7812 8.985315 ACATTCTCTGATTCCTGCAAAATATA 57.015 30.769 0.00 0.00 0.00 0.86
5233 7813 9.412460 ACATTCTCTGATTCCTGCAAAATATAA 57.588 29.630 0.00 0.00 0.00 0.98
5234 7814 9.674824 CATTCTCTGATTCCTGCAAAATATAAC 57.325 33.333 0.00 0.00 0.00 1.89
5235 7815 7.482654 TCTCTGATTCCTGCAAAATATAACG 57.517 36.000 0.00 0.00 0.00 3.18
5236 7816 7.272244 TCTCTGATTCCTGCAAAATATAACGA 58.728 34.615 0.00 0.00 0.00 3.85
5237 7817 7.933577 TCTCTGATTCCTGCAAAATATAACGAT 59.066 33.333 0.00 0.00 0.00 3.73
5238 7818 7.864686 TCTGATTCCTGCAAAATATAACGATG 58.135 34.615 0.00 0.00 0.00 3.84
5239 7819 6.437928 TGATTCCTGCAAAATATAACGATGC 58.562 36.000 0.00 0.00 37.52 3.91
5240 7820 4.829064 TCCTGCAAAATATAACGATGCC 57.171 40.909 0.00 0.00 36.20 4.40
5241 7821 3.249799 TCCTGCAAAATATAACGATGCCG 59.750 43.478 0.00 0.00 42.50 5.69
5242 7822 3.249799 CCTGCAAAATATAACGATGCCGA 59.750 43.478 0.00 0.00 39.50 5.54
5243 7823 4.083324 CCTGCAAAATATAACGATGCCGAT 60.083 41.667 0.00 0.00 39.50 4.18
5244 7824 5.121611 CCTGCAAAATATAACGATGCCGATA 59.878 40.000 0.00 0.00 39.50 2.92
5245 7825 6.348132 CCTGCAAAATATAACGATGCCGATAA 60.348 38.462 0.00 0.00 39.50 1.75
5246 7826 7.139896 TGCAAAATATAACGATGCCGATAAT 57.860 32.000 0.00 0.00 39.50 1.28
5247 7827 8.257830 TGCAAAATATAACGATGCCGATAATA 57.742 30.769 0.00 0.00 39.50 0.98
5248 7828 8.722394 TGCAAAATATAACGATGCCGATAATAA 58.278 29.630 0.00 0.00 39.50 1.40
5249 7829 8.995906 GCAAAATATAACGATGCCGATAATAAC 58.004 33.333 0.00 0.00 39.50 1.89
5255 7835 5.356882 ACGATGCCGATAATAACATTTGG 57.643 39.130 0.00 0.00 39.50 3.28
5256 7836 4.158384 CGATGCCGATAATAACATTTGGC 58.842 43.478 0.00 0.00 41.33 4.52
5257 7837 3.617540 TGCCGATAATAACATTTGGCG 57.382 42.857 0.00 0.00 43.83 5.69
5258 7838 2.287308 TGCCGATAATAACATTTGGCGC 60.287 45.455 0.00 0.00 43.83 6.53
5259 7839 2.031157 GCCGATAATAACATTTGGCGCT 60.031 45.455 7.64 0.00 0.00 5.92
5260 7840 3.554524 CCGATAATAACATTTGGCGCTG 58.445 45.455 7.64 0.00 0.00 5.18
5261 7841 2.973224 CGATAATAACATTTGGCGCTGC 59.027 45.455 7.64 0.00 0.00 5.25
5262 7842 3.303990 CGATAATAACATTTGGCGCTGCT 60.304 43.478 7.64 0.00 0.00 4.24
5263 7843 2.282701 AATAACATTTGGCGCTGCTG 57.717 45.000 7.64 2.67 0.00 4.41
5264 7844 0.457035 ATAACATTTGGCGCTGCTGG 59.543 50.000 7.64 0.00 0.00 4.85
5265 7845 0.893270 TAACATTTGGCGCTGCTGGT 60.893 50.000 7.64 1.18 0.00 4.00
5266 7846 1.747325 AACATTTGGCGCTGCTGGTT 61.747 50.000 7.64 4.35 0.00 3.67
5267 7847 1.735198 CATTTGGCGCTGCTGGTTG 60.735 57.895 7.64 0.00 0.00 3.77
5268 7848 3.578515 ATTTGGCGCTGCTGGTTGC 62.579 57.895 7.64 0.00 43.25 4.17
5277 7857 2.282040 GCTGGTTGCAGCTCCACT 60.282 61.111 0.00 0.00 44.31 4.00
5293 7873 4.505217 CTGCGCGCCGATCACAAC 62.505 66.667 30.77 0.00 0.00 3.32
5296 7876 3.554692 CGCGCCGATCACAACCTC 61.555 66.667 0.00 0.00 0.00 3.85
5297 7877 2.125512 GCGCCGATCACAACCTCT 60.126 61.111 0.00 0.00 0.00 3.69
5298 7878 2.456119 GCGCCGATCACAACCTCTG 61.456 63.158 0.00 0.00 0.00 3.35
5299 7879 2.456119 CGCCGATCACAACCTCTGC 61.456 63.158 0.00 0.00 0.00 4.26
5300 7880 1.078848 GCCGATCACAACCTCTGCT 60.079 57.895 0.00 0.00 0.00 4.24
5301 7881 1.086634 GCCGATCACAACCTCTGCTC 61.087 60.000 0.00 0.00 0.00 4.26
5302 7882 0.534412 CCGATCACAACCTCTGCTCT 59.466 55.000 0.00 0.00 0.00 4.09
5303 7883 1.470632 CCGATCACAACCTCTGCTCTC 60.471 57.143 0.00 0.00 0.00 3.20
5304 7884 1.476085 CGATCACAACCTCTGCTCTCT 59.524 52.381 0.00 0.00 0.00 3.10
5305 7885 2.685388 CGATCACAACCTCTGCTCTCTA 59.315 50.000 0.00 0.00 0.00 2.43
5306 7886 3.317711 CGATCACAACCTCTGCTCTCTAT 59.682 47.826 0.00 0.00 0.00 1.98
5307 7887 4.202101 CGATCACAACCTCTGCTCTCTATT 60.202 45.833 0.00 0.00 0.00 1.73
5308 7888 5.669477 GATCACAACCTCTGCTCTCTATTT 58.331 41.667 0.00 0.00 0.00 1.40
5309 7889 5.078411 TCACAACCTCTGCTCTCTATTTC 57.922 43.478 0.00 0.00 0.00 2.17
5310 7890 4.081420 TCACAACCTCTGCTCTCTATTTCC 60.081 45.833 0.00 0.00 0.00 3.13
5311 7891 3.840666 ACAACCTCTGCTCTCTATTTCCA 59.159 43.478 0.00 0.00 0.00 3.53
5312 7892 4.081198 ACAACCTCTGCTCTCTATTTCCAG 60.081 45.833 0.00 0.00 0.00 3.86
5313 7893 2.433970 ACCTCTGCTCTCTATTTCCAGC 59.566 50.000 0.00 0.00 0.00 4.85
5314 7894 2.433604 CCTCTGCTCTCTATTTCCAGCA 59.566 50.000 0.00 0.00 39.58 4.41
5315 7895 3.118482 CCTCTGCTCTCTATTTCCAGCAA 60.118 47.826 0.00 0.00 41.27 3.91
5316 7896 4.511527 CTCTGCTCTCTATTTCCAGCAAA 58.488 43.478 0.00 0.00 41.27 3.68
5317 7897 4.910195 TCTGCTCTCTATTTCCAGCAAAA 58.090 39.130 0.00 0.00 41.27 2.44
5318 7898 5.316167 TCTGCTCTCTATTTCCAGCAAAAA 58.684 37.500 0.00 0.00 41.27 1.94
5340 7920 4.763593 CGCCAACCGTAGCAATTG 57.236 55.556 0.00 0.00 0.00 2.32
5341 7921 2.167161 CGCCAACCGTAGCAATTGA 58.833 52.632 10.34 0.00 0.00 2.57
5342 7922 0.179200 CGCCAACCGTAGCAATTGAC 60.179 55.000 10.34 0.30 0.00 3.18
5343 7923 0.179200 GCCAACCGTAGCAATTGACG 60.179 55.000 10.34 11.09 38.79 4.35
5344 7924 0.179200 CCAACCGTAGCAATTGACGC 60.179 55.000 10.34 0.00 37.75 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250252 TGTGCAATGCGAGAAGGTGA 60.250 50.000 0.00 0.00 0.00 4.02
1 2 0.806868 ATGTGCAATGCGAGAAGGTG 59.193 50.000 0.00 0.00 0.00 4.00
3 4 2.642139 AAATGTGCAATGCGAGAAGG 57.358 45.000 0.00 0.00 0.00 3.46
106 617 2.122768 GTCTCCTCCATGATCAACCCT 58.877 52.381 0.00 0.00 0.00 4.34
108 619 3.274288 GTTGTCTCCTCCATGATCAACC 58.726 50.000 0.00 0.00 0.00 3.77
110 621 2.239654 GGGTTGTCTCCTCCATGATCAA 59.760 50.000 0.00 0.00 0.00 2.57
116 627 2.240667 CTCATTGGGTTGTCTCCTCCAT 59.759 50.000 0.00 0.00 0.00 3.41
179 690 3.070878 GCTTCCCTCTTCTCTAGATTGGG 59.929 52.174 0.00 1.33 30.92 4.12
277 789 2.746279 TGCCCCTTTCTCTTTTGTCA 57.254 45.000 0.00 0.00 0.00 3.58
290 802 5.893824 CCTTCATATTTTCTACTTTGCCCCT 59.106 40.000 0.00 0.00 0.00 4.79
335 847 3.208922 TCATACTGGATCTAGGTCCCCAA 59.791 47.826 19.72 4.72 37.48 4.12
355 867 2.732016 CGTTCCCCAGTGACGTCA 59.268 61.111 15.76 15.76 32.52 4.35
378 890 1.575922 CAACCGTGTCCGTACTCGA 59.424 57.895 4.07 0.00 43.47 4.04
439 951 4.980805 TCGTGTTGGGCCGACAGC 62.981 66.667 27.04 18.99 42.60 4.40
443 955 2.181521 GTGTTTCGTGTTGGGCCGA 61.182 57.895 0.00 0.00 0.00 5.54
456 968 0.035458 CAGCCCTCCTTCGAGTGTTT 59.965 55.000 0.00 0.00 33.93 2.83
460 972 1.000486 TAGCAGCCCTCCTTCGAGT 60.000 57.895 0.00 0.00 33.93 4.18
477 989 4.080582 CCAGTGATTGTCCCACCAATAGTA 60.081 45.833 0.00 0.00 35.24 1.82
481 993 1.710244 TCCAGTGATTGTCCCACCAAT 59.290 47.619 0.00 0.00 37.74 3.16
522 1034 1.605058 GGTTAGGAGACGAGCCTGCA 61.605 60.000 0.00 0.00 36.96 4.41
525 1037 0.924823 TAGGGTTAGGAGACGAGCCT 59.075 55.000 0.00 0.00 46.30 4.58
623 1135 3.490933 CCCGCAAGAATTCTCTACATCGA 60.491 47.826 8.78 0.00 43.02 3.59
634 1146 3.614870 GCAAACTGAATCCCGCAAGAATT 60.615 43.478 0.00 0.00 43.02 2.17
646 1158 9.807649 GAAGGATGTATAAATTGCAAACTGAAT 57.192 29.630 1.71 0.00 0.00 2.57
662 1175 4.384056 CAATGCGAGAAGGAAGGATGTAT 58.616 43.478 0.00 0.00 0.00 2.29
670 1183 1.825090 ATGTGCAATGCGAGAAGGAA 58.175 45.000 0.00 0.00 0.00 3.36
722 1245 0.168128 CCGGACATTCAGCGAAAACC 59.832 55.000 0.00 0.00 0.00 3.27
773 1296 5.279456 CCCTCCAAGTTTTCTTTAACATGGG 60.279 44.000 9.92 0.00 43.56 4.00
776 1299 7.855784 ATTCCCTCCAAGTTTTCTTTAACAT 57.144 32.000 0.00 0.00 38.17 2.71
849 2640 8.647796 CCCTTGACATATATAGTACTGGAAACA 58.352 37.037 5.39 0.00 39.59 2.83
886 2677 5.296283 CGTCGGGTTATCTTCTCTCTCTTTA 59.704 44.000 0.00 0.00 0.00 1.85
1413 3208 4.201871 CCTCAAACAGCAAAACTAACACGA 60.202 41.667 0.00 0.00 0.00 4.35
1619 3464 7.858382 ACGATTCAGAGATCTACACTAAAATCG 59.142 37.037 22.20 22.20 42.31 3.34
1642 3487 6.275494 TCACTAACATGTAGGATGAAACGA 57.725 37.500 0.00 0.00 0.00 3.85
1666 3516 3.535280 TGTATTTATGCTCCACGCTGA 57.465 42.857 0.00 0.00 40.11 4.26
1686 3536 4.599047 TGGCGAACATCCAAAAAGAATT 57.401 36.364 0.00 0.00 0.00 2.17
1703 3553 2.584791 CAGAAAACGAATCCTTTGGCG 58.415 47.619 0.00 0.00 0.00 5.69
1707 3557 4.821805 TCTCAAGCAGAAAACGAATCCTTT 59.178 37.500 0.00 0.00 0.00 3.11
1708 3558 4.214332 GTCTCAAGCAGAAAACGAATCCTT 59.786 41.667 0.00 0.00 30.72 3.36
1939 3797 3.323775 TGGAGGAACTGAAGGTTTAGGT 58.676 45.455 0.00 0.00 41.55 3.08
2024 3883 2.725221 ATGGTCTGCTTGGGAAGATC 57.275 50.000 0.00 0.00 28.49 2.75
2120 3979 2.892852 ACCATCAATTGCATTATCCCCG 59.107 45.455 0.00 0.00 0.00 5.73
2336 4196 8.470002 GCTAGGAAATACACATTGAAAAGGATT 58.530 33.333 0.00 0.00 0.00 3.01
2337 4197 7.615365 TGCTAGGAAATACACATTGAAAAGGAT 59.385 33.333 0.00 0.00 0.00 3.24
2402 4262 3.500448 TCAATGGCTGTACACAAGGAA 57.500 42.857 0.00 0.00 0.00 3.36
2403 4263 3.411446 CTTCAATGGCTGTACACAAGGA 58.589 45.455 0.00 0.00 0.00 3.36
2919 4780 8.542497 ACTAAATACGAAAGCTCACATAAACA 57.458 30.769 0.00 0.00 0.00 2.83
2951 4816 8.133024 TGCAATTTCCTTCTAACATAACCAAT 57.867 30.769 0.00 0.00 0.00 3.16
3003 4868 5.411361 CGAAGGTTCTCACAAATATGTTGGA 59.589 40.000 0.00 0.00 37.82 3.53
3044 4909 9.578576 TTGTAGTTCAGAGTACCTAAGTAAAGA 57.421 33.333 0.00 0.00 31.83 2.52
3269 5134 1.263217 CCAACCAAACACGCTGTAGAC 59.737 52.381 0.00 0.00 0.00 2.59
3397 5274 4.455533 GGCGCATGATAGGAATTATGTGAA 59.544 41.667 10.83 0.00 40.32 3.18
3457 5507 4.067944 AGGGAGTTCTACTGAGATTGGT 57.932 45.455 0.00 0.00 0.00 3.67
3459 5509 6.126409 AGAGTAGGGAGTTCTACTGAGATTG 58.874 44.000 8.98 0.00 46.91 2.67
3467 5517 7.565323 TCGAATTTAGAGTAGGGAGTTCTAC 57.435 40.000 0.00 0.00 39.76 2.59
3490 5540 4.503910 GCAACATTTGGTAAGGGGAATTC 58.496 43.478 0.00 0.00 0.00 2.17
3687 5915 9.832445 AAGGTACATAACTACATCCAATTACTG 57.168 33.333 0.00 0.00 0.00 2.74
3782 6014 2.580783 CCCCAACCCCTCAGATTAAAGA 59.419 50.000 0.00 0.00 0.00 2.52
3814 6114 6.333416 GGAGAATGCAAAAGGAATAAAGGAC 58.667 40.000 0.00 0.00 0.00 3.85
3831 6131 4.010349 GGGACTACTTGTTTGGGAGAATG 58.990 47.826 0.00 0.00 0.00 2.67
3833 6133 2.374170 GGGGACTACTTGTTTGGGAGAA 59.626 50.000 0.00 0.00 0.00 2.87
3857 6157 0.475906 CATAAAGCAGAGGGAGGGGG 59.524 60.000 0.00 0.00 0.00 5.40
3858 6158 0.179006 GCATAAAGCAGAGGGAGGGG 60.179 60.000 0.00 0.00 44.79 4.79
3859 6159 3.410960 GCATAAAGCAGAGGGAGGG 57.589 57.895 0.00 0.00 44.79 4.30
3925 6225 6.842280 TCCCCTATGATTAACTACTGCAGTAA 59.158 38.462 25.95 14.56 36.04 2.24
3927 6227 5.216622 TCCCCTATGATTAACTACTGCAGT 58.783 41.667 25.12 25.12 40.05 4.40
3928 6228 5.808366 TCCCCTATGATTAACTACTGCAG 57.192 43.478 13.48 13.48 0.00 4.41
3929 6229 6.763715 AATCCCCTATGATTAACTACTGCA 57.236 37.500 0.00 0.00 33.27 4.41
3930 6230 7.224297 TGAAATCCCCTATGATTAACTACTGC 58.776 38.462 0.00 0.00 33.91 4.40
4057 6453 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
4059 6455 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
4060 6456 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
4061 6457 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
4062 6458 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
4063 6459 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
4140 6536 5.147162 CAAGAAAAGCATCGTCAAGGTAAC 58.853 41.667 0.00 0.00 0.00 2.50
4190 6586 1.352156 GGTCGGTGACTCGCATTCAC 61.352 60.000 1.55 1.55 42.35 3.18
4280 6676 4.194640 CCTCGGTGATCTGAAATGAACAT 58.805 43.478 0.00 0.00 0.00 2.71
4344 6740 0.603569 ATTCTCGCACTTCCGTCACT 59.396 50.000 0.00 0.00 0.00 3.41
4346 6742 0.601057 TGATTCTCGCACTTCCGTCA 59.399 50.000 0.00 0.00 0.00 4.35
4522 6921 2.147958 TCCAACATCAACGGCTACAAC 58.852 47.619 0.00 0.00 0.00 3.32
4691 7105 5.237561 TCACTCAAAACTATTTGCGCTGTAA 59.762 36.000 9.73 0.14 44.52 2.41
4697 7111 4.213270 TGGACTCACTCAAAACTATTTGCG 59.787 41.667 0.00 0.00 44.52 4.85
4704 7118 4.381411 GTTAGCTGGACTCACTCAAAACT 58.619 43.478 0.00 0.00 0.00 2.66
4721 7135 3.951663 ACCTAGTTGGACATTGGTTAGC 58.048 45.455 0.00 0.00 39.71 3.09
4727 7141 3.535561 CCTGCTACCTAGTTGGACATTG 58.464 50.000 0.00 0.00 39.71 2.82
4751 7166 4.508124 CCCATTAAACTGACGAGCATACTC 59.492 45.833 0.00 0.00 39.75 2.59
4752 7167 4.081087 ACCCATTAAACTGACGAGCATACT 60.081 41.667 0.00 0.00 0.00 2.12
4760 7175 1.338389 ACGGGACCCATTAAACTGACG 60.338 52.381 12.15 0.00 0.00 4.35
4787 7202 3.605749 TAGGTGCTCGCCAGCCAAC 62.606 63.158 0.00 0.00 46.26 3.77
4819 7278 1.107114 TGTGTTGGCCAACGATTGTT 58.893 45.000 36.62 0.00 43.94 2.83
4821 7280 0.383590 TGTGTGTTGGCCAACGATTG 59.616 50.000 36.62 0.00 43.94 2.67
4822 7281 0.383949 GTGTGTGTTGGCCAACGATT 59.616 50.000 36.62 0.00 43.94 3.34
4823 7282 1.781025 CGTGTGTGTTGGCCAACGAT 61.781 55.000 36.62 0.00 43.94 3.73
4824 7283 2.465299 CGTGTGTGTTGGCCAACGA 61.465 57.895 36.62 25.88 43.94 3.85
4825 7284 2.024022 CGTGTGTGTTGGCCAACG 59.976 61.111 36.62 24.66 43.94 4.10
4826 7285 1.063488 GACGTGTGTGTTGGCCAAC 59.937 57.895 36.78 36.78 41.50 3.77
4828 7287 2.892914 CGACGTGTGTGTTGGCCA 60.893 61.111 0.00 0.00 0.00 5.36
4829 7288 4.307908 GCGACGTGTGTGTTGGCC 62.308 66.667 0.00 0.00 0.00 5.36
4834 7293 1.136690 CAATGTAGCGACGTGTGTGT 58.863 50.000 0.00 0.00 0.00 3.72
4836 7295 0.319555 AGCAATGTAGCGACGTGTGT 60.320 50.000 0.00 0.00 40.15 3.72
4837 7296 0.093535 CAGCAATGTAGCGACGTGTG 59.906 55.000 0.00 0.00 40.15 3.82
4842 7347 0.366871 CACGACAGCAATGTAGCGAC 59.633 55.000 0.00 0.00 40.15 5.19
4844 7349 0.093535 CACACGACAGCAATGTAGCG 59.906 55.000 0.00 0.00 40.15 4.26
4851 7356 2.715005 GCAAGCACACGACAGCAA 59.285 55.556 0.00 0.00 0.00 3.91
4870 7375 2.169789 CGAGCAGGCCGACAATGAG 61.170 63.158 0.00 0.00 0.00 2.90
4895 7407 1.378882 ATGCAATGGCTGTGGCTACG 61.379 55.000 0.00 0.00 41.91 3.51
4972 7550 1.373246 CGTGGCAAAGCAATGGGTG 60.373 57.895 0.00 0.00 0.00 4.61
5011 7591 1.172812 AAGCTTCAACCCAAGACGGC 61.173 55.000 0.00 0.00 0.00 5.68
5013 7593 0.593128 CCAAGCTTCAACCCAAGACG 59.407 55.000 0.00 0.00 0.00 4.18
5014 7594 1.692411 ACCAAGCTTCAACCCAAGAC 58.308 50.000 0.00 0.00 0.00 3.01
5015 7595 2.031120 CAACCAAGCTTCAACCCAAGA 58.969 47.619 0.00 0.00 0.00 3.02
5016 7596 2.031120 TCAACCAAGCTTCAACCCAAG 58.969 47.619 0.00 0.00 0.00 3.61
5019 7599 2.167487 TGTTTCAACCAAGCTTCAACCC 59.833 45.455 0.00 0.00 0.00 4.11
5021 7601 6.091986 TGAAAATGTTTCAACCAAGCTTCAAC 59.908 34.615 0.00 0.00 0.00 3.18
5025 7605 5.976458 TCTGAAAATGTTTCAACCAAGCTT 58.024 33.333 0.00 0.00 0.00 3.74
5026 7606 5.596836 TCTGAAAATGTTTCAACCAAGCT 57.403 34.783 5.06 0.00 0.00 3.74
5027 7607 5.277011 GCTTCTGAAAATGTTTCAACCAAGC 60.277 40.000 17.29 17.29 32.97 4.01
5028 7608 5.234972 GGCTTCTGAAAATGTTTCAACCAAG 59.765 40.000 5.06 8.03 0.00 3.61
5029 7609 5.115480 GGCTTCTGAAAATGTTTCAACCAA 58.885 37.500 5.06 0.00 0.00 3.67
5030 7610 4.692228 GGCTTCTGAAAATGTTTCAACCA 58.308 39.130 5.06 0.00 0.00 3.67
5031 7611 3.735746 CGGCTTCTGAAAATGTTTCAACC 59.264 43.478 5.06 4.12 0.00 3.77
5032 7612 3.735746 CCGGCTTCTGAAAATGTTTCAAC 59.264 43.478 5.06 0.00 0.00 3.18
5033 7613 3.383185 ACCGGCTTCTGAAAATGTTTCAA 59.617 39.130 0.00 0.00 0.00 2.69
5034 7614 2.955660 ACCGGCTTCTGAAAATGTTTCA 59.044 40.909 0.00 3.57 0.00 2.69
5035 7615 3.643159 ACCGGCTTCTGAAAATGTTTC 57.357 42.857 0.00 0.00 0.00 2.78
5036 7616 3.132111 ACAACCGGCTTCTGAAAATGTTT 59.868 39.130 0.00 0.00 0.00 2.83
5037 7617 2.693074 ACAACCGGCTTCTGAAAATGTT 59.307 40.909 0.00 0.00 0.00 2.71
5038 7618 2.306847 ACAACCGGCTTCTGAAAATGT 58.693 42.857 0.00 0.00 0.00 2.71
5039 7619 3.670627 GCTACAACCGGCTTCTGAAAATG 60.671 47.826 0.00 0.00 0.00 2.32
5040 7620 2.488153 GCTACAACCGGCTTCTGAAAAT 59.512 45.455 0.00 0.00 0.00 1.82
5041 7621 1.877443 GCTACAACCGGCTTCTGAAAA 59.123 47.619 0.00 0.00 0.00 2.29
5042 7622 1.071699 AGCTACAACCGGCTTCTGAAA 59.928 47.619 0.00 0.00 34.96 2.69
5043 7623 0.685097 AGCTACAACCGGCTTCTGAA 59.315 50.000 0.00 0.00 34.96 3.02
5044 7624 0.685097 AAGCTACAACCGGCTTCTGA 59.315 50.000 0.00 0.00 44.18 3.27
5045 7625 1.464997 GAAAGCTACAACCGGCTTCTG 59.535 52.381 0.00 0.00 46.35 3.02
5046 7626 1.348036 AGAAAGCTACAACCGGCTTCT 59.652 47.619 0.00 0.00 46.35 2.85
5047 7627 1.809684 AGAAAGCTACAACCGGCTTC 58.190 50.000 0.00 0.00 46.35 3.86
5049 7629 1.523758 CAAGAAAGCTACAACCGGCT 58.476 50.000 0.00 0.00 40.85 5.52
5050 7630 0.521735 CCAAGAAAGCTACAACCGGC 59.478 55.000 0.00 0.00 0.00 6.13
5051 7631 0.521735 GCCAAGAAAGCTACAACCGG 59.478 55.000 0.00 0.00 0.00 5.28
5052 7632 0.521735 GGCCAAGAAAGCTACAACCG 59.478 55.000 0.00 0.00 0.00 4.44
5053 7633 0.521735 CGGCCAAGAAAGCTACAACC 59.478 55.000 2.24 0.00 0.00 3.77
5054 7634 1.235724 ACGGCCAAGAAAGCTACAAC 58.764 50.000 2.24 0.00 0.00 3.32
5055 7635 1.606668 CAACGGCCAAGAAAGCTACAA 59.393 47.619 2.24 0.00 0.00 2.41
5056 7636 1.234821 CAACGGCCAAGAAAGCTACA 58.765 50.000 2.24 0.00 0.00 2.74
5057 7637 0.521735 CCAACGGCCAAGAAAGCTAC 59.478 55.000 2.24 0.00 0.00 3.58
5058 7638 0.109723 ACCAACGGCCAAGAAAGCTA 59.890 50.000 2.24 0.00 0.00 3.32
5059 7639 0.755327 AACCAACGGCCAAGAAAGCT 60.755 50.000 2.24 0.00 0.00 3.74
5060 7640 0.597377 CAACCAACGGCCAAGAAAGC 60.597 55.000 2.24 0.00 0.00 3.51
5061 7641 0.597377 GCAACCAACGGCCAAGAAAG 60.597 55.000 2.24 0.00 0.00 2.62
5062 7642 1.323271 TGCAACCAACGGCCAAGAAA 61.323 50.000 2.24 0.00 0.00 2.52
5063 7643 1.112315 ATGCAACCAACGGCCAAGAA 61.112 50.000 2.24 0.00 0.00 2.52
5064 7644 1.523154 GATGCAACCAACGGCCAAGA 61.523 55.000 2.24 0.00 0.00 3.02
5065 7645 1.080569 GATGCAACCAACGGCCAAG 60.081 57.895 2.24 0.00 0.00 3.61
5066 7646 2.569354 GGATGCAACCAACGGCCAA 61.569 57.895 8.36 0.00 0.00 4.52
5067 7647 2.988684 GGATGCAACCAACGGCCA 60.989 61.111 8.36 0.00 0.00 5.36
5068 7648 1.815817 AAAGGATGCAACCAACGGCC 61.816 55.000 16.21 0.00 0.00 6.13
5069 7649 0.033366 AAAAGGATGCAACCAACGGC 59.967 50.000 16.21 0.00 0.00 5.68
5070 7650 3.510719 CATAAAAGGATGCAACCAACGG 58.489 45.455 16.21 0.00 0.00 4.44
5071 7651 3.056891 ACCATAAAAGGATGCAACCAACG 60.057 43.478 16.21 0.00 0.00 4.10
5072 7652 4.535526 ACCATAAAAGGATGCAACCAAC 57.464 40.909 16.21 0.00 0.00 3.77
5073 7653 4.892433 CAACCATAAAAGGATGCAACCAA 58.108 39.130 16.21 0.00 0.00 3.67
5074 7654 4.533919 CAACCATAAAAGGATGCAACCA 57.466 40.909 16.21 0.00 0.00 3.67
5080 7660 3.016736 ACGAGGCAACCATAAAAGGATG 58.983 45.455 0.00 0.00 34.81 3.51
5081 7661 3.054361 AGACGAGGCAACCATAAAAGGAT 60.054 43.478 0.00 0.00 37.17 3.24
5082 7662 2.304761 AGACGAGGCAACCATAAAAGGA 59.695 45.455 0.00 0.00 37.17 3.36
5083 7663 2.711542 AGACGAGGCAACCATAAAAGG 58.288 47.619 0.00 0.00 37.17 3.11
5084 7664 3.181520 CGAAGACGAGGCAACCATAAAAG 60.182 47.826 0.00 0.00 42.66 2.27
5085 7665 2.739913 CGAAGACGAGGCAACCATAAAA 59.260 45.455 0.00 0.00 42.66 1.52
5086 7666 2.343101 CGAAGACGAGGCAACCATAAA 58.657 47.619 0.00 0.00 42.66 1.40
5087 7667 1.404986 CCGAAGACGAGGCAACCATAA 60.405 52.381 0.00 0.00 42.66 1.90
5088 7668 0.174845 CCGAAGACGAGGCAACCATA 59.825 55.000 0.00 0.00 42.66 2.74
5089 7669 1.079127 CCGAAGACGAGGCAACCAT 60.079 57.895 0.00 0.00 42.66 3.55
5090 7670 2.035237 AACCGAAGACGAGGCAACCA 62.035 55.000 0.00 0.00 42.66 3.67
5091 7671 1.301479 AACCGAAGACGAGGCAACC 60.301 57.895 0.00 0.00 42.66 3.77
5092 7672 0.599204 TCAACCGAAGACGAGGCAAC 60.599 55.000 0.00 0.00 42.66 4.17
5093 7673 0.105224 TTCAACCGAAGACGAGGCAA 59.895 50.000 0.00 0.00 42.66 4.52
5094 7674 0.105224 TTTCAACCGAAGACGAGGCA 59.895 50.000 0.00 0.00 42.66 4.75
5095 7675 0.511653 GTTTCAACCGAAGACGAGGC 59.488 55.000 0.00 0.00 42.66 4.70
5096 7676 2.150397 AGTTTCAACCGAAGACGAGG 57.850 50.000 0.00 0.00 42.66 4.63
5097 7677 4.531659 AAAAGTTTCAACCGAAGACGAG 57.468 40.909 0.00 0.00 42.66 4.18
5098 7678 4.392445 TGAAAAAGTTTCAACCGAAGACGA 59.608 37.500 0.99 0.00 42.66 4.20
5099 7679 4.654015 TGAAAAAGTTTCAACCGAAGACG 58.346 39.130 0.99 0.00 39.43 4.18
5128 7708 1.876416 GCGGGTGAGAAAGCTACAACA 60.876 52.381 0.00 0.00 0.00 3.33
5132 7712 1.810030 CGGCGGGTGAGAAAGCTAC 60.810 63.158 0.00 0.00 0.00 3.58
5133 7713 2.577059 CGGCGGGTGAGAAAGCTA 59.423 61.111 0.00 0.00 0.00 3.32
5147 7727 1.354155 GTAAAATGCTACGCCCGGC 59.646 57.895 0.00 0.00 0.00 6.13
5148 7728 0.806884 TCGTAAAATGCTACGCCCGG 60.807 55.000 0.00 0.00 43.44 5.73
5149 7729 0.299597 GTCGTAAAATGCTACGCCCG 59.700 55.000 0.00 0.00 43.44 6.13
5150 7730 0.299597 CGTCGTAAAATGCTACGCCC 59.700 55.000 0.00 0.00 43.44 6.13
5151 7731 3.773591 CGTCGTAAAATGCTACGCC 57.226 52.632 0.00 0.00 43.44 5.68
5153 7733 1.006391 CCAGCGTCGTAAAATGCTACG 60.006 52.381 0.00 0.00 44.78 3.51
5154 7734 1.997606 ACCAGCGTCGTAAAATGCTAC 59.002 47.619 0.00 0.00 39.48 3.58
5155 7735 2.373540 ACCAGCGTCGTAAAATGCTA 57.626 45.000 0.00 0.00 39.48 3.49
5156 7736 1.196808 CAACCAGCGTCGTAAAATGCT 59.803 47.619 0.00 0.00 42.21 3.79
5157 7737 1.602191 CAACCAGCGTCGTAAAATGC 58.398 50.000 0.00 0.00 0.00 3.56
5158 7738 1.602191 GCAACCAGCGTCGTAAAATG 58.398 50.000 0.00 0.00 0.00 2.32
5176 7756 3.112709 GTCACGCGGAGGAACTGC 61.113 66.667 12.47 0.00 45.89 4.40
5177 7757 2.805353 CGTCACGCGGAGGAACTG 60.805 66.667 12.47 0.00 41.55 3.16
5186 7766 2.954868 GGCTATGACCGTCACGCG 60.955 66.667 3.53 3.53 40.95 6.01
5187 7767 2.585247 GGGCTATGACCGTCACGC 60.585 66.667 2.57 9.50 0.00 5.34
5188 7768 1.105167 TAGGGGCTATGACCGTCACG 61.105 60.000 2.57 0.00 28.84 4.35
5189 7769 0.388294 GTAGGGGCTATGACCGTCAC 59.612 60.000 2.57 0.00 28.84 3.67
5190 7770 0.032912 TGTAGGGGCTATGACCGTCA 60.033 55.000 3.10 3.10 28.84 4.35
5191 7771 1.339097 ATGTAGGGGCTATGACCGTC 58.661 55.000 0.00 0.00 28.84 4.79
5192 7772 1.692519 GAATGTAGGGGCTATGACCGT 59.307 52.381 0.00 0.00 31.78 4.83
5193 7773 1.971357 AGAATGTAGGGGCTATGACCG 59.029 52.381 0.00 0.00 0.00 4.79
5194 7774 3.007398 CAGAGAATGTAGGGGCTATGACC 59.993 52.174 0.00 0.00 0.00 4.02
5195 7775 3.898123 TCAGAGAATGTAGGGGCTATGAC 59.102 47.826 0.00 0.00 0.00 3.06
5196 7776 4.199002 TCAGAGAATGTAGGGGCTATGA 57.801 45.455 0.00 0.00 0.00 2.15
5197 7777 5.486526 GAATCAGAGAATGTAGGGGCTATG 58.513 45.833 0.00 0.00 0.00 2.23
5198 7778 4.534103 GGAATCAGAGAATGTAGGGGCTAT 59.466 45.833 0.00 0.00 0.00 2.97
5199 7779 3.904339 GGAATCAGAGAATGTAGGGGCTA 59.096 47.826 0.00 0.00 0.00 3.93
5200 7780 2.708325 GGAATCAGAGAATGTAGGGGCT 59.292 50.000 0.00 0.00 0.00 5.19
5201 7781 2.708325 AGGAATCAGAGAATGTAGGGGC 59.292 50.000 0.00 0.00 0.00 5.80
5202 7782 3.495806 GCAGGAATCAGAGAATGTAGGGG 60.496 52.174 0.00 0.00 0.00 4.79
5203 7783 3.135348 TGCAGGAATCAGAGAATGTAGGG 59.865 47.826 0.00 0.00 0.00 3.53
5204 7784 4.412796 TGCAGGAATCAGAGAATGTAGG 57.587 45.455 0.00 0.00 0.00 3.18
5205 7785 6.748333 TTTTGCAGGAATCAGAGAATGTAG 57.252 37.500 0.00 0.00 0.00 2.74
5206 7786 8.985315 ATATTTTGCAGGAATCAGAGAATGTA 57.015 30.769 1.19 0.00 0.00 2.29
5207 7787 7.893124 ATATTTTGCAGGAATCAGAGAATGT 57.107 32.000 1.19 0.00 0.00 2.71
5208 7788 9.674824 GTTATATTTTGCAGGAATCAGAGAATG 57.325 33.333 1.19 0.00 0.00 2.67
5209 7789 8.562892 CGTTATATTTTGCAGGAATCAGAGAAT 58.437 33.333 1.19 0.00 0.00 2.40
5210 7790 7.768582 TCGTTATATTTTGCAGGAATCAGAGAA 59.231 33.333 1.19 0.00 0.00 2.87
5211 7791 7.272244 TCGTTATATTTTGCAGGAATCAGAGA 58.728 34.615 1.19 0.00 0.00 3.10
5212 7792 7.482654 TCGTTATATTTTGCAGGAATCAGAG 57.517 36.000 1.19 0.00 0.00 3.35
5213 7793 7.520453 GCATCGTTATATTTTGCAGGAATCAGA 60.520 37.037 1.19 0.00 33.58 3.27
5214 7794 6.580041 GCATCGTTATATTTTGCAGGAATCAG 59.420 38.462 1.19 0.00 33.58 2.90
5215 7795 6.437928 GCATCGTTATATTTTGCAGGAATCA 58.562 36.000 1.19 0.00 33.58 2.57
5216 7796 5.858581 GGCATCGTTATATTTTGCAGGAATC 59.141 40.000 1.19 0.00 35.04 2.52
5217 7797 5.562696 CGGCATCGTTATATTTTGCAGGAAT 60.563 40.000 3.35 3.35 35.04 3.01
5218 7798 4.260990 CGGCATCGTTATATTTTGCAGGAA 60.261 41.667 0.00 0.00 35.04 3.36
5219 7799 3.249799 CGGCATCGTTATATTTTGCAGGA 59.750 43.478 0.00 0.00 35.04 3.86
5220 7800 3.249799 TCGGCATCGTTATATTTTGCAGG 59.750 43.478 0.00 0.00 37.69 4.85
5221 7801 4.466567 TCGGCATCGTTATATTTTGCAG 57.533 40.909 0.00 0.00 37.69 4.41
5222 7802 6.546972 TTATCGGCATCGTTATATTTTGCA 57.453 33.333 0.00 0.00 37.69 4.08
5223 7803 8.995906 GTTATTATCGGCATCGTTATATTTTGC 58.004 33.333 0.00 0.00 37.69 3.68
5229 7809 8.661257 CCAAATGTTATTATCGGCATCGTTATA 58.339 33.333 0.00 0.00 37.69 0.98
5230 7810 7.526608 CCAAATGTTATTATCGGCATCGTTAT 58.473 34.615 0.00 0.00 37.69 1.89
5231 7811 6.566942 GCCAAATGTTATTATCGGCATCGTTA 60.567 38.462 0.00 0.00 37.98 3.18
5232 7812 5.757886 CCAAATGTTATTATCGGCATCGTT 58.242 37.500 0.00 0.00 37.69 3.85
5233 7813 4.320202 GCCAAATGTTATTATCGGCATCGT 60.320 41.667 0.00 0.00 37.98 3.73
5234 7814 4.158384 GCCAAATGTTATTATCGGCATCG 58.842 43.478 0.00 0.00 37.98 3.84
5235 7815 4.158384 CGCCAAATGTTATTATCGGCATC 58.842 43.478 0.00 0.00 37.95 3.91
5236 7816 3.611530 GCGCCAAATGTTATTATCGGCAT 60.612 43.478 0.00 0.00 37.95 4.40
5237 7817 2.287308 GCGCCAAATGTTATTATCGGCA 60.287 45.455 0.00 0.00 37.95 5.69
5238 7818 2.031157 AGCGCCAAATGTTATTATCGGC 60.031 45.455 2.29 0.00 34.68 5.54
5239 7819 3.554524 CAGCGCCAAATGTTATTATCGG 58.445 45.455 2.29 0.00 0.00 4.18
5240 7820 2.973224 GCAGCGCCAAATGTTATTATCG 59.027 45.455 2.29 0.00 0.00 2.92
5241 7821 3.976942 CAGCAGCGCCAAATGTTATTATC 59.023 43.478 2.29 0.00 0.00 1.75
5242 7822 3.243501 CCAGCAGCGCCAAATGTTATTAT 60.244 43.478 2.29 0.00 0.00 1.28
5243 7823 2.098934 CCAGCAGCGCCAAATGTTATTA 59.901 45.455 2.29 0.00 0.00 0.98
5244 7824 1.135024 CCAGCAGCGCCAAATGTTATT 60.135 47.619 2.29 0.00 0.00 1.40
5245 7825 0.457035 CCAGCAGCGCCAAATGTTAT 59.543 50.000 2.29 0.00 0.00 1.89
5246 7826 0.893270 ACCAGCAGCGCCAAATGTTA 60.893 50.000 2.29 0.00 0.00 2.41
5247 7827 1.747325 AACCAGCAGCGCCAAATGTT 61.747 50.000 2.29 0.00 0.00 2.71
5248 7828 2.202395 AACCAGCAGCGCCAAATGT 61.202 52.632 2.29 0.00 0.00 2.71
5249 7829 1.735198 CAACCAGCAGCGCCAAATG 60.735 57.895 2.29 0.00 0.00 2.32
5250 7830 2.652530 CAACCAGCAGCGCCAAAT 59.347 55.556 2.29 0.00 0.00 2.32
5251 7831 4.283403 GCAACCAGCAGCGCCAAA 62.283 61.111 2.29 0.00 44.79 3.28
5261 7841 3.664495 CAGTGGAGCTGCAACCAG 58.336 61.111 10.44 0.00 42.13 4.00
5276 7856 4.505217 GTTGTGATCGGCGCGCAG 62.505 66.667 34.42 30.03 0.00 5.18
5279 7859 3.554692 GAGGTTGTGATCGGCGCG 61.555 66.667 0.00 0.00 0.00 6.86
5280 7860 2.125512 AGAGGTTGTGATCGGCGC 60.126 61.111 0.00 0.00 0.00 6.53
5281 7861 2.456119 GCAGAGGTTGTGATCGGCG 61.456 63.158 0.00 0.00 0.00 6.46
5282 7862 1.078848 AGCAGAGGTTGTGATCGGC 60.079 57.895 0.00 0.00 36.96 5.54
5283 7863 0.534412 AGAGCAGAGGTTGTGATCGG 59.466 55.000 0.00 0.00 35.44 4.18
5284 7864 1.476085 AGAGAGCAGAGGTTGTGATCG 59.524 52.381 0.00 0.00 35.44 3.69
5285 7865 4.935352 ATAGAGAGCAGAGGTTGTGATC 57.065 45.455 0.00 0.00 0.00 2.92
5286 7866 5.396213 GGAAATAGAGAGCAGAGGTTGTGAT 60.396 44.000 0.00 0.00 0.00 3.06
5287 7867 4.081420 GGAAATAGAGAGCAGAGGTTGTGA 60.081 45.833 0.00 0.00 0.00 3.58
5288 7868 4.187694 GGAAATAGAGAGCAGAGGTTGTG 58.812 47.826 0.00 0.00 0.00 3.33
5289 7869 3.840666 TGGAAATAGAGAGCAGAGGTTGT 59.159 43.478 0.00 0.00 0.00 3.32
5290 7870 4.440880 CTGGAAATAGAGAGCAGAGGTTG 58.559 47.826 0.00 0.00 0.00 3.77
5291 7871 3.118445 GCTGGAAATAGAGAGCAGAGGTT 60.118 47.826 0.00 0.00 0.00 3.50
5292 7872 2.433970 GCTGGAAATAGAGAGCAGAGGT 59.566 50.000 0.00 0.00 0.00 3.85
5293 7873 2.433604 TGCTGGAAATAGAGAGCAGAGG 59.566 50.000 0.00 0.00 36.54 3.69
5294 7874 3.815856 TGCTGGAAATAGAGAGCAGAG 57.184 47.619 0.00 0.00 36.54 3.35
5295 7875 4.558226 TTTGCTGGAAATAGAGAGCAGA 57.442 40.909 0.00 0.00 42.19 4.26
5296 7876 5.633830 TTTTTGCTGGAAATAGAGAGCAG 57.366 39.130 0.00 0.00 42.19 4.24
5315 7895 1.068816 GCTACGGTTGGCGTCATTTTT 60.069 47.619 0.00 0.00 0.00 1.94
5316 7896 0.519961 GCTACGGTTGGCGTCATTTT 59.480 50.000 0.00 0.00 0.00 1.82
5317 7897 0.604243 TGCTACGGTTGGCGTCATTT 60.604 50.000 0.00 0.00 0.00 2.32
5318 7898 0.604243 TTGCTACGGTTGGCGTCATT 60.604 50.000 0.00 0.00 0.00 2.57
5319 7899 0.392461 ATTGCTACGGTTGGCGTCAT 60.392 50.000 0.00 0.00 0.00 3.06
5320 7900 0.604243 AATTGCTACGGTTGGCGTCA 60.604 50.000 0.00 0.00 0.00 4.35
5321 7901 0.179200 CAATTGCTACGGTTGGCGTC 60.179 55.000 0.00 0.00 0.00 5.19
5322 7902 0.604243 TCAATTGCTACGGTTGGCGT 60.604 50.000 0.00 0.00 0.00 5.68
5323 7903 0.179200 GTCAATTGCTACGGTTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
5324 7904 0.179200 CGTCAATTGCTACGGTTGGC 60.179 55.000 10.88 0.00 35.51 4.52
5325 7905 0.179200 GCGTCAATTGCTACGGTTGG 60.179 55.000 18.04 0.00 39.46 3.77
5326 7906 3.290098 GCGTCAATTGCTACGGTTG 57.710 52.632 18.04 0.00 39.46 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.