Multiple sequence alignment - TraesCS1B01G100700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G100700 chr1B 100.000 3803 0 0 1 3803 110125069 110128871 0.000000e+00 7023.0
1 TraesCS1B01G100700 chr1B 82.022 89 14 2 3384 3471 357397772 357397859 1.470000e-09 75.0
2 TraesCS1B01G100700 chr1B 100.000 34 0 0 1246 1279 110126251 110126284 3.170000e-06 63.9
3 TraesCS1B01G100700 chr1B 100.000 34 0 0 1183 1216 110126314 110126347 3.170000e-06 63.9
4 TraesCS1B01G100700 chr1D 95.010 3046 92 25 1 3018 68884372 68887385 0.000000e+00 4728.0
5 TraesCS1B01G100700 chr1D 91.371 649 53 1 3158 3803 68887451 68888099 0.000000e+00 885.0
6 TraesCS1B01G100700 chr1D 100.000 34 0 0 1246 1279 68885563 68885596 3.170000e-06 63.9
7 TraesCS1B01G100700 chr1A 93.069 2496 120 32 1 2476 67466278 67468740 0.000000e+00 3602.0
8 TraesCS1B01G100700 chr1A 90.260 1345 85 19 2493 3803 67468931 67470263 0.000000e+00 1716.0
9 TraesCS1B01G100700 chr1A 100.000 34 0 0 1246 1279 67467455 67467488 3.170000e-06 63.9
10 TraesCS1B01G100700 chr2D 86.654 517 46 7 1351 1863 476041904 476041407 5.550000e-153 551.0
11 TraesCS1B01G100700 chr5B 86.346 520 50 9 1344 1861 249370338 249370838 7.180000e-152 547.0
12 TraesCS1B01G100700 chr5B 94.253 87 4 1 3472 3558 263474170 263474085 8.570000e-27 132.0
13 TraesCS1B01G100700 chr2B 85.440 364 50 3 1501 1863 556849996 556849635 3.590000e-100 375.0
14 TraesCS1B01G100700 chr2B 94.253 87 4 1 3472 3558 205849699 205849614 8.570000e-27 132.0
15 TraesCS1B01G100700 chr2B 91.667 96 4 4 3473 3568 623367172 623367263 3.080000e-26 130.0
16 TraesCS1B01G100700 chr2B 89.831 59 6 0 3392 3450 591893701 591893759 4.070000e-10 76.8
17 TraesCS1B01G100700 chr4A 80.342 234 40 5 3573 3803 739332517 739332747 5.050000e-39 172.0
18 TraesCS1B01G100700 chr2A 93.000 100 4 2 3473 3572 543987252 543987156 3.960000e-30 143.0
19 TraesCS1B01G100700 chr2A 83.516 91 13 2 3382 3470 210035965 210036055 2.430000e-12 84.2
20 TraesCS1B01G100700 chr7A 90.625 96 9 0 3473 3568 567017383 567017288 1.110000e-25 128.0
21 TraesCS1B01G100700 chr5D 90.722 97 8 1 3473 3569 215138744 215138649 1.110000e-25 128.0
22 TraesCS1B01G100700 chr5A 89.691 97 10 0 3473 3569 374656556 374656460 1.430000e-24 124.0
23 TraesCS1B01G100700 chr4D 84.946 93 10 3 3382 3471 106388962 106388871 1.450000e-14 91.6
24 TraesCS1B01G100700 chr3D 83.146 89 15 0 2596 2684 157345629 157345541 8.760000e-12 82.4
25 TraesCS1B01G100700 chr6D 95.122 41 2 0 3410 3450 469346719 469346679 8.820000e-07 65.8
26 TraesCS1B01G100700 chr3B 82.192 73 13 0 2612 2684 228505991 228505919 3.170000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G100700 chr1B 110125069 110128871 3802 False 2383.600000 7023 100.000000 1 3803 3 chr1B.!!$F2 3802
1 TraesCS1B01G100700 chr1D 68884372 68888099 3727 False 1892.300000 4728 95.460333 1 3803 3 chr1D.!!$F1 3802
2 TraesCS1B01G100700 chr1A 67466278 67470263 3985 False 1793.966667 3602 94.443000 1 3803 3 chr1A.!!$F1 3802
3 TraesCS1B01G100700 chr5B 249370338 249370838 500 False 547.000000 547 86.346000 1344 1861 1 chr5B.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 166 0.466555 CTCGATCGTCCCTTCCTCCT 60.467 60.000 15.94 0.00 0.00 3.69 F
636 646 0.534203 TGGAACCTGAGTTTCCACGC 60.534 55.000 7.44 0.00 35.94 5.34 F
671 685 0.683179 GAAAATAAGCGGGGCCTGGT 60.683 55.000 12.24 12.24 0.00 4.00 F
1466 1487 1.153745 GAGCGACAACGAGGAGCAT 60.154 57.895 0.00 0.00 42.66 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2025 0.396139 AGGCAGGGTAATGTGCATGG 60.396 55.000 0.0 0.0 41.75 3.66 R
1998 2026 1.135527 CAAGGCAGGGTAATGTGCATG 59.864 52.381 0.0 0.0 41.75 4.06 R
2213 2244 1.152830 GTCCTGGGAAAGGCACCAA 59.847 57.895 0.0 0.0 46.92 3.67 R
3342 3574 0.178953 ATGCAGGCAGTTTGAGGGTT 60.179 50.000 0.0 0.0 0.00 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.974757 CGCCGGTCGTCCCCTATC 61.975 72.222 1.90 0.00 0.00 2.08
27 29 2.284493 GGTCGTCCCCTATCCCCA 59.716 66.667 0.00 0.00 0.00 4.96
28 30 1.837499 GGTCGTCCCCTATCCCCAG 60.837 68.421 0.00 0.00 0.00 4.45
29 31 2.122989 TCGTCCCCTATCCCCAGC 60.123 66.667 0.00 0.00 0.00 4.85
104 106 1.597461 CTGGTCTCCCGGGTCTTTC 59.403 63.158 22.86 8.46 32.98 2.62
164 166 0.466555 CTCGATCGTCCCTTCCTCCT 60.467 60.000 15.94 0.00 0.00 3.69
487 495 9.726232 CACTAACATCAACTGAATAATTCATGG 57.274 33.333 0.00 0.00 39.30 3.66
560 568 3.335579 AGCGGAACCAAGATGTAGTTTC 58.664 45.455 0.00 0.00 0.00 2.78
561 569 3.071479 GCGGAACCAAGATGTAGTTTCA 58.929 45.455 0.00 0.00 0.00 2.69
571 579 6.875726 CCAAGATGTAGTTTCAAGATGTGAGA 59.124 38.462 0.00 0.00 37.61 3.27
612 622 2.418910 CCTCTCTCGCGGGACATGT 61.419 63.158 3.45 0.00 0.00 3.21
636 646 0.534203 TGGAACCTGAGTTTCCACGC 60.534 55.000 7.44 0.00 35.94 5.34
643 653 0.817634 TGAGTTTCCACGCCAACCTG 60.818 55.000 0.00 0.00 0.00 4.00
647 657 1.737793 GTTTCCACGCCAACCTGATAG 59.262 52.381 0.00 0.00 0.00 2.08
654 664 2.301870 ACGCCAACCTGATAGTGAAGAA 59.698 45.455 0.00 0.00 0.00 2.52
665 679 5.123227 TGATAGTGAAGAAAATAAGCGGGG 58.877 41.667 0.00 0.00 0.00 5.73
671 685 0.683179 GAAAATAAGCGGGGCCTGGT 60.683 55.000 12.24 12.24 0.00 4.00
705 719 5.902613 TTTCAGGTAGGCAAGAATCAATG 57.097 39.130 0.00 0.00 0.00 2.82
710 724 4.400567 AGGTAGGCAAGAATCAATGAAAGC 59.599 41.667 0.00 0.00 0.00 3.51
901 921 8.253810 CCCATATCATGTACTGTAGGAAGTATG 58.746 40.741 0.00 0.00 35.20 2.39
916 936 1.202475 AGTATGTGTGTGCGTGTGTCA 60.202 47.619 0.00 0.00 0.00 3.58
1045 1065 2.294449 TGTCACTCACCTGCTCTACT 57.706 50.000 0.00 0.00 0.00 2.57
1051 1071 2.025793 ACTCACCTGCTCTACTGCTCTA 60.026 50.000 0.00 0.00 0.00 2.43
1052 1072 3.221771 CTCACCTGCTCTACTGCTCTAT 58.778 50.000 0.00 0.00 0.00 1.98
1124 1145 1.886861 CTGTCGCCCGTTTCGTTGAG 61.887 60.000 0.00 0.00 0.00 3.02
1259 1280 3.844090 GGAGAGGTGAGGAGGCGC 61.844 72.222 0.00 0.00 0.00 6.53
1262 1283 4.803426 GAGGTGAGGAGGCGCGTG 62.803 72.222 7.63 0.00 0.00 5.34
1466 1487 1.153745 GAGCGACAACGAGGAGCAT 60.154 57.895 0.00 0.00 42.66 3.79
1668 1689 2.525629 TCGTGGTGGGGAAGCAGA 60.526 61.111 0.00 0.00 36.83 4.26
2051 2079 2.648102 CGACGACGACGAGCATCC 60.648 66.667 15.32 0.00 42.66 3.51
2085 2113 4.573162 GTCTCCGACGGGTCAAAG 57.427 61.111 15.25 3.38 33.83 2.77
2213 2244 1.549170 CTAAGTCTGGCCAACCGTAGT 59.451 52.381 7.01 0.00 39.70 2.73
2380 2412 7.634671 TCGTTCCACACTCAGATTAGTTATA 57.365 36.000 0.00 0.00 0.00 0.98
2381 2413 7.478322 TCGTTCCACACTCAGATTAGTTATAC 58.522 38.462 0.00 0.00 0.00 1.47
2382 2414 7.338703 TCGTTCCACACTCAGATTAGTTATACT 59.661 37.037 0.00 0.00 0.00 2.12
2383 2415 7.644551 CGTTCCACACTCAGATTAGTTATACTC 59.355 40.741 0.00 0.00 0.00 2.59
2384 2416 7.584122 TCCACACTCAGATTAGTTATACTCC 57.416 40.000 0.00 0.00 0.00 3.85
2425 2457 2.816087 ACTGCTGGTATGTCTTTGCTTG 59.184 45.455 0.00 0.00 0.00 4.01
2441 2473 7.970061 GTCTTTGCTTGCTGTTTGATCATAATA 59.030 33.333 0.00 0.00 0.00 0.98
2443 2475 9.309516 CTTTGCTTGCTGTTTGATCATAATAAT 57.690 29.630 0.00 0.00 0.00 1.28
2487 2519 1.029681 GGTGGTGGAGCGAAAGTTTT 58.970 50.000 0.00 0.00 0.00 2.43
2692 2904 0.970937 TCGGATCTTGAGGGCTTCGT 60.971 55.000 0.00 0.00 0.00 3.85
2740 2952 5.429957 GCAAAGTGCATAAGCTAAGCTAT 57.570 39.130 0.00 0.00 44.26 2.97
2826 3040 5.278266 CGGGAGTTTCACTTCATTTTTAGCA 60.278 40.000 0.00 0.00 0.00 3.49
2990 3204 4.647611 AGACAATATCACGTGGAAACCAA 58.352 39.130 17.00 0.00 34.18 3.67
3072 3286 6.126940 ACCAGATTGACTCATAACTGCTATGT 60.127 38.462 0.00 0.00 38.87 2.29
3126 3342 6.849151 AGATGGTATTTTACTCATAACCCCC 58.151 40.000 0.00 0.00 0.00 5.40
3138 3354 1.883678 TAACCCCCTAGGCCTAACAC 58.116 55.000 14.85 0.00 40.58 3.32
3156 3387 3.582164 ACACTTTGCCCCTTATTTCCAA 58.418 40.909 0.00 0.00 0.00 3.53
3160 3391 4.081697 ACTTTGCCCCTTATTTCCAATTCG 60.082 41.667 0.00 0.00 0.00 3.34
3321 3553 9.902196 GGTAGTGAAGCTAATTCTAATAGTCTC 57.098 37.037 0.00 0.00 38.83 3.36
3339 3571 9.883142 AATAGTCTCTTAAGGTCATCTTCAAAG 57.117 33.333 1.85 0.00 36.93 2.77
3342 3574 7.015682 AGTCTCTTAAGGTCATCTTCAAAGTGA 59.984 37.037 1.85 0.00 36.93 3.41
3357 3589 0.846693 AGTGAACCCTCAAACTGCCT 59.153 50.000 0.00 0.00 31.88 4.75
3366 3598 0.955428 TCAAACTGCCTGCATCCGTC 60.955 55.000 0.00 0.00 0.00 4.79
3369 3601 4.147449 CTGCCTGCATCCGTCCGA 62.147 66.667 0.00 0.00 0.00 4.55
3376 3608 2.260434 CATCCGTCCGAACCACGT 59.740 61.111 0.00 0.00 40.78 4.49
3377 3609 1.804326 CATCCGTCCGAACCACGTC 60.804 63.158 0.00 0.00 40.78 4.34
3378 3610 2.998279 ATCCGTCCGAACCACGTCC 61.998 63.158 0.00 0.00 40.78 4.79
3399 3634 5.646360 GTCCGGACCTTGATTTTAATTGAGA 59.354 40.000 24.75 0.00 0.00 3.27
3458 3693 6.976088 TCTCTTCGGAGAAATCTAATAGCTG 58.024 40.000 0.00 0.00 46.80 4.24
3464 3699 5.689514 CGGAGAAATCTAATAGCTGTCACAG 59.310 44.000 0.00 0.00 34.12 3.66
3610 3846 3.575805 TGAATTGGGTTTTTGCCTCTCT 58.424 40.909 0.00 0.00 0.00 3.10
3613 3849 5.010617 TGAATTGGGTTTTTGCCTCTCTTAC 59.989 40.000 0.00 0.00 0.00 2.34
3622 3858 6.420913 TTTTGCCTCTCTTACTGACTTACT 57.579 37.500 0.00 0.00 0.00 2.24
3666 3902 1.425448 AGGCTCCAAGCAAAGTAAGGT 59.575 47.619 0.86 0.00 44.75 3.50
3771 4013 6.296026 ACAAGCAAACTGACATAGGAGTAAA 58.704 36.000 0.00 0.00 0.00 2.01
3773 4015 6.115448 AGCAAACTGACATAGGAGTAAAGT 57.885 37.500 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 101 1.913262 TGGCGCCTGGAGAGAAAGA 60.913 57.895 29.70 0.00 0.00 2.52
200 202 2.031768 GGATCGATGGCAGCTCCC 59.968 66.667 0.54 0.00 0.00 4.30
203 205 2.865598 CGAGGGATCGATGGCAGCT 61.866 63.158 0.54 0.00 34.64 4.24
204 206 2.356793 CGAGGGATCGATGGCAGC 60.357 66.667 0.54 0.00 34.64 5.25
205 207 1.300465 CACGAGGGATCGATGGCAG 60.300 63.158 0.54 0.00 36.85 4.85
206 208 2.796193 CCACGAGGGATCGATGGCA 61.796 63.158 0.54 0.00 40.01 4.92
260 262 1.808411 GAGCCCACGTCATGAAAAGA 58.192 50.000 0.00 0.00 0.00 2.52
487 495 4.425577 ACAGCCTCAATTTCGTCAAATC 57.574 40.909 0.00 0.00 30.37 2.17
550 558 7.978414 TGATCTCTCACATCTTGAAACTACATC 59.022 37.037 0.00 0.00 32.21 3.06
560 568 8.209917 TGAATCATTTGATCTCTCACATCTTG 57.790 34.615 0.00 0.00 32.75 3.02
561 569 7.499563 CCTGAATCATTTGATCTCTCACATCTT 59.500 37.037 0.00 0.00 32.75 2.40
571 579 4.021229 TGCTTGCCTGAATCATTTGATCT 58.979 39.130 0.00 0.00 32.75 2.75
612 622 1.982958 GGAAACTCAGGTTCCACCCTA 59.017 52.381 17.43 0.00 39.75 3.53
636 646 7.475840 GCTTATTTTCTTCACTATCAGGTTGG 58.524 38.462 0.00 0.00 0.00 3.77
643 653 4.023963 GCCCCGCTTATTTTCTTCACTATC 60.024 45.833 0.00 0.00 0.00 2.08
647 657 1.134367 GGCCCCGCTTATTTTCTTCAC 59.866 52.381 0.00 0.00 0.00 3.18
654 664 1.076995 GACCAGGCCCCGCTTATTT 60.077 57.895 0.00 0.00 0.00 1.40
665 679 1.644509 AATTTTCCAAGGGACCAGGC 58.355 50.000 0.00 0.00 0.00 4.85
671 685 4.672899 CCTACCTGAAATTTTCCAAGGGA 58.327 43.478 15.99 9.35 29.49 4.20
676 690 4.735369 TCTTGCCTACCTGAAATTTTCCA 58.265 39.130 6.68 0.00 0.00 3.53
721 735 3.700539 CACAGCCACCCAAATGAATATGA 59.299 43.478 0.00 0.00 0.00 2.15
730 744 1.074775 CTAGCCACAGCCACCCAAA 59.925 57.895 0.00 0.00 41.25 3.28
1045 1065 4.636648 GCTTCTAGGCTATACGATAGAGCA 59.363 45.833 11.75 0.00 44.46 4.26
1109 1130 2.356553 TCCTCAACGAAACGGGCG 60.357 61.111 0.00 0.00 0.00 6.13
1124 1145 1.127343 CAAGGTCATCCTCCTCCTCC 58.873 60.000 0.00 0.00 44.35 4.30
1178 1199 2.681778 CGCCTCCTCACCTCCAGT 60.682 66.667 0.00 0.00 0.00 4.00
1996 2024 0.684153 GGCAGGGTAATGTGCATGGT 60.684 55.000 0.00 0.00 41.75 3.55
1997 2025 0.396139 AGGCAGGGTAATGTGCATGG 60.396 55.000 0.00 0.00 41.75 3.66
1998 2026 1.135527 CAAGGCAGGGTAATGTGCATG 59.864 52.381 0.00 0.00 41.75 4.06
1999 2027 1.477553 CAAGGCAGGGTAATGTGCAT 58.522 50.000 0.00 0.00 41.75 3.96
2033 2061 2.398429 GATGCTCGTCGTCGTCGA 59.602 61.111 13.59 13.59 44.12 4.20
2085 2113 3.453070 GACTCGAGGATGCCCTGCC 62.453 68.421 18.41 0.00 44.53 4.85
2213 2244 1.152830 GTCCTGGGAAAGGCACCAA 59.847 57.895 0.00 0.00 46.92 3.67
2380 2412 9.203163 AGTCTAGCACTATTAATTAACTGGAGT 57.797 33.333 0.00 1.08 31.37 3.85
2381 2413 9.469807 CAGTCTAGCACTATTAATTAACTGGAG 57.530 37.037 0.00 0.00 32.21 3.86
2382 2414 7.926555 GCAGTCTAGCACTATTAATTAACTGGA 59.073 37.037 0.00 0.00 32.21 3.86
2383 2415 7.928706 AGCAGTCTAGCACTATTAATTAACTGG 59.071 37.037 0.00 0.00 36.85 4.00
2384 2416 8.759641 CAGCAGTCTAGCACTATTAATTAACTG 58.240 37.037 0.00 1.56 36.85 3.16
2394 2426 4.219115 ACATACCAGCAGTCTAGCACTAT 58.781 43.478 0.00 0.00 36.85 2.12
2425 2457 7.134815 ACGCAGAATTATTATGATCAAACAGC 58.865 34.615 0.00 0.00 0.00 4.40
2441 2473 1.574428 GTTGCCACGACGCAGAATT 59.426 52.632 0.00 0.00 40.53 2.17
2443 2475 2.970324 GGTTGCCACGACGCAGAA 60.970 61.111 0.00 0.00 40.53 3.02
2515 2721 4.878439 ACGTTGAAGCTCATGTAACTGTA 58.122 39.130 0.00 0.00 0.00 2.74
2518 2724 6.426937 ACATTTACGTTGAAGCTCATGTAACT 59.573 34.615 0.00 0.00 31.64 2.24
2524 2730 3.501828 TGCACATTTACGTTGAAGCTCAT 59.498 39.130 0.00 0.00 0.00 2.90
2525 2731 2.875317 TGCACATTTACGTTGAAGCTCA 59.125 40.909 0.00 0.00 0.00 4.26
2826 3040 4.583073 TGTCGCATCCATACACACTATACT 59.417 41.667 0.00 0.00 0.00 2.12
2990 3204 5.359860 GGTTTCCAAGATTCCACCGAATATT 59.640 40.000 0.00 0.00 39.85 1.28
3030 3244 3.388024 TCTGGTCCATACAACTAGCATCC 59.612 47.826 0.00 0.00 0.00 3.51
3116 3332 2.021837 TGTTAGGCCTAGGGGGTTATGA 60.022 50.000 13.36 0.00 37.43 2.15
3126 3342 1.682087 GGGGCAAAGTGTTAGGCCTAG 60.682 57.143 13.36 0.18 46.29 3.02
3138 3354 4.081697 ACGAATTGGAAATAAGGGGCAAAG 60.082 41.667 0.00 0.00 0.00 2.77
3156 3387 3.739300 CGTACCTGACTGACAAAACGAAT 59.261 43.478 0.00 0.00 33.11 3.34
3160 3391 2.480845 AGCGTACCTGACTGACAAAAC 58.519 47.619 0.00 0.00 0.00 2.43
3246 3478 2.179427 GGGGCATTCCAGCTACTTTTT 58.821 47.619 0.00 0.00 37.22 1.94
3251 3483 4.567318 CTGGGGCATTCCAGCTAC 57.433 61.111 6.99 0.00 46.47 3.58
3321 3553 6.072452 GGGTTCACTTTGAAGATGACCTTAAG 60.072 42.308 0.00 0.00 37.00 1.85
3322 3554 5.768164 GGGTTCACTTTGAAGATGACCTTAA 59.232 40.000 0.00 0.00 37.00 1.85
3328 3560 4.705110 TGAGGGTTCACTTTGAAGATGA 57.295 40.909 0.00 0.00 37.00 2.92
3339 3571 0.954452 CAGGCAGTTTGAGGGTTCAC 59.046 55.000 0.00 0.00 31.71 3.18
3342 3574 0.178953 ATGCAGGCAGTTTGAGGGTT 60.179 50.000 0.00 0.00 0.00 4.11
3357 3589 2.047655 GTGGTTCGGACGGATGCA 60.048 61.111 0.00 0.00 0.00 3.96
3369 3601 1.477685 ATCAAGGTCCGGACGTGGTT 61.478 55.000 29.09 18.71 0.00 3.67
3376 3608 5.811190 TCTCAATTAAAATCAAGGTCCGGA 58.189 37.500 0.00 0.00 0.00 5.14
3377 3609 6.509418 TTCTCAATTAAAATCAAGGTCCGG 57.491 37.500 0.00 0.00 0.00 5.14
3378 3610 8.810652 TTTTTCTCAATTAAAATCAAGGTCCG 57.189 30.769 0.00 0.00 0.00 4.79
3408 3643 7.820578 AGGGTGATGTAGTATAGTAACAGAC 57.179 40.000 0.00 0.00 0.00 3.51
3453 3688 1.967779 TGTTGCTACCTGTGACAGCTA 59.032 47.619 7.16 0.00 36.26 3.32
3458 3693 2.526304 TGAGTGTTGCTACCTGTGAC 57.474 50.000 0.00 0.00 0.00 3.67
3464 3699 2.287608 GCCTTTGTTGAGTGTTGCTACC 60.288 50.000 0.00 0.00 0.00 3.18
3553 3789 5.231568 CGGGATGTTGTTACTATCGTCTTTC 59.768 44.000 0.00 0.00 0.00 2.62
3556 3792 3.698040 ACGGGATGTTGTTACTATCGTCT 59.302 43.478 0.00 0.00 0.00 4.18
3559 3795 4.543692 CCTACGGGATGTTGTTACTATCG 58.456 47.826 0.00 0.00 33.58 2.92
3577 3813 2.301346 CCCAATTCATGTGCTCCCTAC 58.699 52.381 0.00 0.00 0.00 3.18
3613 3849 9.924650 AGTTGTAGGTACAATTTAGTAAGTCAG 57.075 33.333 5.88 0.00 46.56 3.51
3634 3870 4.080356 TGCTTGGAGCCTATAATCAGTTGT 60.080 41.667 0.00 0.00 41.51 3.32
3638 3874 5.128919 ACTTTGCTTGGAGCCTATAATCAG 58.871 41.667 0.00 0.00 41.51 2.90
3666 3902 4.887071 CCAAAACCAATATTCATCCTCCGA 59.113 41.667 0.00 0.00 0.00 4.55
3745 3987 4.516698 ACTCCTATGTCAGTTTGCTTGTTG 59.483 41.667 0.00 0.00 0.00 3.33
3762 4004 5.006896 TCCCTGAGAACACTTTACTCCTA 57.993 43.478 0.00 0.00 0.00 2.94
3771 4013 1.148027 TCCAGACTCCCTGAGAACACT 59.852 52.381 0.00 0.00 45.78 3.55
3773 4015 2.398754 TTCCAGACTCCCTGAGAACA 57.601 50.000 0.00 0.00 45.78 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.