Multiple sequence alignment - TraesCS1B01G100000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G100000 chr1B 100.000 2993 0 0 1 2993 108094906 108091914 0.000000e+00 5528.0
1 TraesCS1B01G100000 chr1B 91.411 815 64 6 2184 2993 108098823 108099636 0.000000e+00 1112.0
2 TraesCS1B01G100000 chr1B 92.593 513 35 3 2484 2993 108188352 108188864 0.000000e+00 734.0
3 TraesCS1B01G100000 chr1B 92.079 303 21 3 2184 2486 108150217 108150516 9.920000e-115 424.0
4 TraesCS1B01G100000 chr1B 89.933 149 14 1 129 276 108094630 108094482 1.100000e-44 191.0
5 TraesCS1B01G100000 chr1B 89.933 149 14 1 277 425 108094778 108094631 1.100000e-44 191.0
6 TraesCS1B01G100000 chr1B 93.578 109 6 1 270 378 167990533 167990426 8.590000e-36 161.0
7 TraesCS1B01G100000 chr1B 100.000 43 0 0 234 276 356886066 356886108 2.470000e-11 80.5
8 TraesCS1B01G100000 chr1A 89.842 1644 117 29 568 2182 65663147 65664769 0.000000e+00 2065.0
9 TraesCS1B01G100000 chr1A 93.137 102 6 1 277 377 12036736 12036635 6.680000e-32 148.0
10 TraesCS1B01G100000 chr1A 90.110 91 9 0 386 476 166902668 166902758 5.240000e-23 119.0
11 TraesCS1B01G100000 chr1A 89.362 94 10 0 392 485 410471981 410471888 5.240000e-23 119.0
12 TraesCS1B01G100000 chr1D 92.977 1196 70 7 993 2182 66763913 66765100 0.000000e+00 1731.0
13 TraesCS1B01G100000 chr1D 84.646 508 41 17 478 953 66763406 66763908 3.490000e-129 472.0
14 TraesCS1B01G100000 chr1D 90.780 141 11 2 97 236 149046540 149046401 1.420000e-43 187.0
15 TraesCS1B01G100000 chr1D 97.917 48 0 1 230 276 209986996 209986949 6.880000e-12 82.4
16 TraesCS1B01G100000 chr1D 97.872 47 1 0 230 276 236037395 236037349 6.880000e-12 82.4
17 TraesCS1B01G100000 chr1D 95.745 47 2 0 230 276 236040308 236040354 3.200000e-10 76.8
18 TraesCS1B01G100000 chr3B 91.568 593 48 2 966 1557 391787190 391786599 0.000000e+00 817.0
19 TraesCS1B01G100000 chr3B 75.510 196 46 2 1676 1870 472306265 472306071 8.830000e-16 95.3
20 TraesCS1B01G100000 chr3B 98.039 51 1 0 1 51 799316564 799316514 4.110000e-14 89.8
21 TraesCS1B01G100000 chr3B 97.959 49 1 0 1 49 413116402 413116450 5.320000e-13 86.1
22 TraesCS1B01G100000 chr7B 81.988 855 99 25 2185 2993 134037297 134036452 0.000000e+00 675.0
23 TraesCS1B01G100000 chr7B 92.361 144 9 2 72 214 49230966 49230824 1.410000e-48 204.0
24 TraesCS1B01G100000 chr7B 96.296 54 2 0 1 54 105273515 105273568 4.110000e-14 89.8
25 TraesCS1B01G100000 chr5B 92.641 231 14 3 47 276 179048338 179048110 2.220000e-86 329.0
26 TraesCS1B01G100000 chr5B 89.055 201 16 5 277 475 179048256 179048060 8.290000e-61 244.0
27 TraesCS1B01G100000 chr5B 93.284 134 9 0 96 229 248679952 248680085 6.540000e-47 198.0
28 TraesCS1B01G100000 chr5B 94.059 101 6 0 277 377 248679985 248680085 1.440000e-33 154.0
29 TraesCS1B01G100000 chr5B 74.016 254 54 10 1622 1869 585495307 585495060 3.180000e-15 93.5
30 TraesCS1B01G100000 chr3D 77.717 368 69 7 1158 1523 103874133 103874489 2.340000e-51 213.0
31 TraesCS1B01G100000 chr3D 77.632 152 34 0 1622 1773 362424014 362423863 3.180000e-15 93.5
32 TraesCS1B01G100000 chr5D 94.615 130 7 0 96 225 488459937 488460066 5.060000e-48 202.0
33 TraesCS1B01G100000 chr5D 89.394 66 4 3 1 64 523356307 523356371 2.470000e-11 80.5
34 TraesCS1B01G100000 chr5D 74.020 204 41 10 1673 1870 478000371 478000174 4.140000e-09 73.1
35 TraesCS1B01G100000 chr7A 92.701 137 9 1 89 224 501993146 501993010 2.350000e-46 196.0
36 TraesCS1B01G100000 chr7A 86.916 107 11 3 377 480 552412593 552412699 1.890000e-22 117.0
37 TraesCS1B01G100000 chr7A 97.826 46 1 0 231 276 59837448 59837403 2.470000e-11 80.5
38 TraesCS1B01G100000 chr5A 90.132 152 14 1 72 223 699214939 699214789 2.350000e-46 196.0
39 TraesCS1B01G100000 chr5A 85.714 182 21 3 286 467 396384021 396383845 1.420000e-43 187.0
40 TraesCS1B01G100000 chr5A 90.179 112 9 2 262 372 648503893 648504003 8.650000e-31 145.0
41 TraesCS1B01G100000 chr5A 75.794 252 53 7 1622 1869 597279458 597279211 1.460000e-23 121.0
42 TraesCS1B01G100000 chr2B 94.488 127 7 0 97 223 373742983 373743109 2.350000e-46 196.0
43 TraesCS1B01G100000 chr2B 84.034 119 15 4 1620 1736 526670309 526670193 8.770000e-21 111.0
44 TraesCS1B01G100000 chr2B 100.000 49 0 0 1 49 155348780 155348732 1.140000e-14 91.6
45 TraesCS1B01G100000 chr2B 74.269 171 38 5 1703 1870 796278075 796278242 1.930000e-07 67.6
46 TraesCS1B01G100000 chr2B 100.000 30 0 0 1841 1870 795643156 795643185 4.170000e-04 56.5
47 TraesCS1B01G100000 chr6D 94.118 102 6 0 277 378 117922138 117922239 3.990000e-34 156.0
48 TraesCS1B01G100000 chr6D 88.732 71 6 2 1 69 458034832 458034762 5.320000e-13 86.1
49 TraesCS1B01G100000 chr2D 95.833 96 4 0 277 372 407381899 407381994 3.990000e-34 156.0
50 TraesCS1B01G100000 chr2D 95.745 47 2 0 230 276 570416743 570416789 3.200000e-10 76.8
51 TraesCS1B01G100000 chr6A 94.845 97 5 0 282 378 98803150 98803246 5.170000e-33 152.0
52 TraesCS1B01G100000 chr6A 88.000 100 12 0 386 485 171310442 171310343 5.240000e-23 119.0
53 TraesCS1B01G100000 chr6A 89.362 94 10 0 392 485 409937387 409937294 5.240000e-23 119.0
54 TraesCS1B01G100000 chr7D 93.137 102 7 0 270 371 459948084 459948185 1.860000e-32 150.0
55 TraesCS1B01G100000 chr7D 93.333 90 6 0 386 475 623451081 623451170 1.870000e-27 134.0
56 TraesCS1B01G100000 chr7D 90.323 62 6 0 1 62 359274268 359274207 6.880000e-12 82.4
57 TraesCS1B01G100000 chr7D 95.833 48 1 1 230 276 7880974 7880927 3.200000e-10 76.8
58 TraesCS1B01G100000 chr4A 93.939 99 6 0 277 375 241021086 241021184 1.860000e-32 150.0
59 TraesCS1B01G100000 chr4A 82.857 175 16 3 51 225 400463326 400463166 8.650000e-31 145.0
60 TraesCS1B01G100000 chr4A 81.921 177 18 4 51 226 494064168 494064005 1.450000e-28 137.0
61 TraesCS1B01G100000 chr3A 95.181 83 4 0 392 474 92214364 92214282 6.730000e-27 132.0
62 TraesCS1B01G100000 chr2A 74.131 259 51 13 1620 1870 761541640 761541390 3.180000e-15 93.5
63 TraesCS1B01G100000 chr4B 100.000 49 0 0 1 49 84470637 84470589 1.140000e-14 91.6
64 TraesCS1B01G100000 chr4B 94.643 56 2 1 1 56 439885542 439885488 5.320000e-13 86.1
65 TraesCS1B01G100000 chrUn 74.566 173 34 9 1703 1870 22889019 22889186 1.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G100000 chr1B 108091914 108094906 2992 True 1970.0 5528 93.288667 1 2993 3 chr1B.!!$R2 2992
1 TraesCS1B01G100000 chr1B 108098823 108099636 813 False 1112.0 1112 91.411000 2184 2993 1 chr1B.!!$F1 809
2 TraesCS1B01G100000 chr1B 108188352 108188864 512 False 734.0 734 92.593000 2484 2993 1 chr1B.!!$F3 509
3 TraesCS1B01G100000 chr1A 65663147 65664769 1622 False 2065.0 2065 89.842000 568 2182 1 chr1A.!!$F1 1614
4 TraesCS1B01G100000 chr1D 66763406 66765100 1694 False 1101.5 1731 88.811500 478 2182 2 chr1D.!!$F2 1704
5 TraesCS1B01G100000 chr3B 391786599 391787190 591 True 817.0 817 91.568000 966 1557 1 chr3B.!!$R1 591
6 TraesCS1B01G100000 chr7B 134036452 134037297 845 True 675.0 675 81.988000 2185 2993 1 chr7B.!!$R2 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 932 0.037326 GTTCTCAGATCACCACCGCA 60.037 55.0 0.0 0.0 0.0 5.69 F
948 981 0.447011 GCTTCACACTGCTCAGATGC 59.553 55.0 3.6 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 1925 0.114560 TATCCTCCACCCTCGGATCC 59.885 60.0 0.00 0.0 38.45 3.36 R
2419 2490 0.322008 CAGGTGACCTTCAAGGAGGC 60.322 60.0 11.59 0.0 40.65 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.034030 GCGCCATTAGTGCCCATC 58.966 61.111 0.00 0.00 46.76 3.51
20 21 2.555547 GCGCCATTAGTGCCCATCC 61.556 63.158 0.00 0.00 46.76 3.51
21 22 1.898574 CGCCATTAGTGCCCATCCC 60.899 63.158 0.00 0.00 0.00 3.85
22 23 1.229927 GCCATTAGTGCCCATCCCA 59.770 57.895 0.00 0.00 0.00 4.37
23 24 0.178953 GCCATTAGTGCCCATCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
24 25 1.915141 CCATTAGTGCCCATCCCATC 58.085 55.000 0.00 0.00 0.00 3.51
25 26 1.426598 CCATTAGTGCCCATCCCATCT 59.573 52.381 0.00 0.00 0.00 2.90
26 27 2.644299 CCATTAGTGCCCATCCCATCTA 59.356 50.000 0.00 0.00 0.00 1.98
27 28 3.267812 CCATTAGTGCCCATCCCATCTAT 59.732 47.826 0.00 0.00 0.00 1.98
28 29 4.474651 CCATTAGTGCCCATCCCATCTATA 59.525 45.833 0.00 0.00 0.00 1.31
29 30 5.397221 CCATTAGTGCCCATCCCATCTATAG 60.397 48.000 0.00 0.00 0.00 1.31
30 31 1.912043 AGTGCCCATCCCATCTATAGC 59.088 52.381 0.00 0.00 0.00 2.97
31 32 1.065126 GTGCCCATCCCATCTATAGCC 60.065 57.143 0.00 0.00 0.00 3.93
32 33 0.548510 GCCCATCCCATCTATAGCCC 59.451 60.000 0.00 0.00 0.00 5.19
33 34 1.908068 GCCCATCCCATCTATAGCCCT 60.908 57.143 0.00 0.00 0.00 5.19
34 35 2.566746 CCCATCCCATCTATAGCCCTT 58.433 52.381 0.00 0.00 0.00 3.95
35 36 2.922283 CCCATCCCATCTATAGCCCTTT 59.078 50.000 0.00 0.00 0.00 3.11
36 37 3.334881 CCCATCCCATCTATAGCCCTTTT 59.665 47.826 0.00 0.00 0.00 2.27
37 38 4.568592 CCCATCCCATCTATAGCCCTTTTC 60.569 50.000 0.00 0.00 0.00 2.29
38 39 4.568592 CCATCCCATCTATAGCCCTTTTCC 60.569 50.000 0.00 0.00 0.00 3.13
39 40 3.954662 TCCCATCTATAGCCCTTTTCCT 58.045 45.455 0.00 0.00 0.00 3.36
40 41 5.101254 TCCCATCTATAGCCCTTTTCCTA 57.899 43.478 0.00 0.00 0.00 2.94
41 42 5.094387 TCCCATCTATAGCCCTTTTCCTAG 58.906 45.833 0.00 0.00 0.00 3.02
42 43 4.846940 CCCATCTATAGCCCTTTTCCTAGT 59.153 45.833 0.00 0.00 0.00 2.57
43 44 6.023603 CCCATCTATAGCCCTTTTCCTAGTA 58.976 44.000 0.00 0.00 0.00 1.82
44 45 6.155393 CCCATCTATAGCCCTTTTCCTAGTAG 59.845 46.154 0.00 0.00 0.00 2.57
45 46 6.726764 CCATCTATAGCCCTTTTCCTAGTAGT 59.273 42.308 0.00 0.00 0.00 2.73
46 47 7.310113 CCATCTATAGCCCTTTTCCTAGTAGTG 60.310 44.444 0.00 0.00 0.00 2.74
47 48 6.680540 TCTATAGCCCTTTTCCTAGTAGTGT 58.319 40.000 0.00 0.00 0.00 3.55
48 49 5.873146 ATAGCCCTTTTCCTAGTAGTGTC 57.127 43.478 0.00 0.00 0.00 3.67
49 50 2.496470 AGCCCTTTTCCTAGTAGTGTCG 59.504 50.000 0.00 0.00 0.00 4.35
50 51 2.494870 GCCCTTTTCCTAGTAGTGTCGA 59.505 50.000 0.00 0.00 0.00 4.20
51 52 3.132467 GCCCTTTTCCTAGTAGTGTCGAT 59.868 47.826 0.00 0.00 0.00 3.59
52 53 4.382793 GCCCTTTTCCTAGTAGTGTCGATT 60.383 45.833 0.00 0.00 0.00 3.34
53 54 5.349809 CCCTTTTCCTAGTAGTGTCGATTC 58.650 45.833 0.00 0.00 0.00 2.52
54 55 5.127356 CCCTTTTCCTAGTAGTGTCGATTCT 59.873 44.000 0.00 0.00 0.00 2.40
55 56 6.037098 CCTTTTCCTAGTAGTGTCGATTCTG 58.963 44.000 0.00 0.00 0.00 3.02
56 57 5.578005 TTTCCTAGTAGTGTCGATTCTGG 57.422 43.478 0.00 0.00 0.00 3.86
57 58 3.552875 TCCTAGTAGTGTCGATTCTGGG 58.447 50.000 0.00 0.00 0.00 4.45
58 59 3.201487 TCCTAGTAGTGTCGATTCTGGGA 59.799 47.826 0.00 0.00 34.36 4.37
59 60 4.141228 TCCTAGTAGTGTCGATTCTGGGAT 60.141 45.833 0.00 0.00 32.41 3.85
60 61 4.022762 CCTAGTAGTGTCGATTCTGGGATG 60.023 50.000 0.00 0.00 0.00 3.51
61 62 2.695666 AGTAGTGTCGATTCTGGGATGG 59.304 50.000 0.00 0.00 0.00 3.51
62 63 1.866015 AGTGTCGATTCTGGGATGGA 58.134 50.000 0.00 0.00 0.00 3.41
63 64 1.482593 AGTGTCGATTCTGGGATGGAC 59.517 52.381 0.00 0.00 35.91 4.02
64 65 1.207089 GTGTCGATTCTGGGATGGACA 59.793 52.381 3.17 3.17 40.80 4.02
65 66 2.118679 TGTCGATTCTGGGATGGACAT 58.881 47.619 3.17 0.00 39.04 3.06
66 67 3.069586 GTGTCGATTCTGGGATGGACATA 59.930 47.826 9.33 0.00 43.46 2.29
67 68 3.069586 TGTCGATTCTGGGATGGACATAC 59.930 47.826 3.17 0.00 39.04 2.39
68 69 3.069586 GTCGATTCTGGGATGGACATACA 59.930 47.826 0.00 0.00 35.57 2.29
69 70 3.903714 TCGATTCTGGGATGGACATACAT 59.096 43.478 0.00 0.00 0.00 2.29
70 71 4.347876 TCGATTCTGGGATGGACATACATT 59.652 41.667 0.00 0.00 0.00 2.71
71 72 5.542251 TCGATTCTGGGATGGACATACATTA 59.458 40.000 0.00 0.00 0.00 1.90
72 73 5.639506 CGATTCTGGGATGGACATACATTAC 59.360 44.000 0.00 0.00 0.00 1.89
73 74 4.974645 TCTGGGATGGACATACATTACC 57.025 45.455 0.00 0.00 0.00 2.85
74 75 4.302930 TCTGGGATGGACATACATTACCA 58.697 43.478 0.00 0.00 36.48 3.25
75 76 4.724293 TCTGGGATGGACATACATTACCAA 59.276 41.667 0.00 0.00 37.57 3.67
76 77 5.192722 TCTGGGATGGACATACATTACCAAA 59.807 40.000 0.00 0.00 37.57 3.28
77 78 5.832221 TGGGATGGACATACATTACCAAAA 58.168 37.500 0.00 0.00 36.15 2.44
78 79 6.256819 TGGGATGGACATACATTACCAAAAA 58.743 36.000 0.00 0.00 36.15 1.94
104 105 6.986904 CCAAAAAGGTCAGAGAATAGTACC 57.013 41.667 0.00 0.00 0.00 3.34
105 106 6.472887 CCAAAAAGGTCAGAGAATAGTACCA 58.527 40.000 0.00 0.00 32.43 3.25
106 107 6.371825 CCAAAAAGGTCAGAGAATAGTACCAC 59.628 42.308 0.00 0.00 32.43 4.16
107 108 5.678955 AAAGGTCAGAGAATAGTACCACC 57.321 43.478 0.00 0.00 32.43 4.61
108 109 4.611564 AGGTCAGAGAATAGTACCACCT 57.388 45.455 0.00 0.00 32.43 4.00
109 110 4.538738 AGGTCAGAGAATAGTACCACCTC 58.461 47.826 0.00 0.00 32.43 3.85
110 111 3.315749 GGTCAGAGAATAGTACCACCTCG 59.684 52.174 0.00 0.00 0.00 4.63
111 112 3.315749 GTCAGAGAATAGTACCACCTCGG 59.684 52.174 0.00 0.00 42.50 4.63
112 113 3.201487 TCAGAGAATAGTACCACCTCGGA 59.799 47.826 0.00 0.00 38.63 4.55
113 114 4.141228 TCAGAGAATAGTACCACCTCGGAT 60.141 45.833 0.00 0.00 38.63 4.18
114 115 4.022762 CAGAGAATAGTACCACCTCGGATG 60.023 50.000 0.00 0.00 38.63 3.51
115 116 3.890147 GAGAATAGTACCACCTCGGATGT 59.110 47.826 0.00 0.00 38.63 3.06
116 117 5.057843 AGAATAGTACCACCTCGGATGTA 57.942 43.478 0.00 0.00 38.63 2.29
117 118 5.071370 AGAATAGTACCACCTCGGATGTAG 58.929 45.833 0.00 0.00 38.63 2.74
118 119 4.719026 ATAGTACCACCTCGGATGTAGA 57.281 45.455 0.00 0.00 38.63 2.59
119 120 3.377253 AGTACCACCTCGGATGTAGAA 57.623 47.619 0.00 0.00 38.63 2.10
120 121 3.705051 AGTACCACCTCGGATGTAGAAA 58.295 45.455 0.00 0.00 38.63 2.52
121 122 4.091549 AGTACCACCTCGGATGTAGAAAA 58.908 43.478 0.00 0.00 38.63 2.29
122 123 4.715297 AGTACCACCTCGGATGTAGAAAAT 59.285 41.667 0.00 0.00 38.63 1.82
123 124 5.895534 AGTACCACCTCGGATGTAGAAAATA 59.104 40.000 0.00 0.00 38.63 1.40
124 125 5.687166 ACCACCTCGGATGTAGAAAATAA 57.313 39.130 0.00 0.00 38.63 1.40
125 126 6.248569 ACCACCTCGGATGTAGAAAATAAT 57.751 37.500 0.00 0.00 38.63 1.28
126 127 7.369551 ACCACCTCGGATGTAGAAAATAATA 57.630 36.000 0.00 0.00 38.63 0.98
127 128 7.974504 ACCACCTCGGATGTAGAAAATAATAT 58.025 34.615 0.00 0.00 38.63 1.28
128 129 9.096823 ACCACCTCGGATGTAGAAAATAATATA 57.903 33.333 0.00 0.00 38.63 0.86
129 130 9.587772 CCACCTCGGATGTAGAAAATAATATAG 57.412 37.037 0.00 0.00 36.56 1.31
130 131 9.587772 CACCTCGGATGTAGAAAATAATATAGG 57.412 37.037 0.00 0.00 0.00 2.57
131 132 9.322769 ACCTCGGATGTAGAAAATAATATAGGT 57.677 33.333 0.00 0.00 0.00 3.08
159 160 7.617533 AAAAACTGAAATCGTAAATTCACGG 57.382 32.000 0.32 0.00 42.19 4.94
160 161 4.939509 ACTGAAATCGTAAATTCACGGG 57.060 40.909 0.32 0.00 42.19 5.28
161 162 4.571919 ACTGAAATCGTAAATTCACGGGA 58.428 39.130 0.32 0.00 42.19 5.14
162 163 4.998672 ACTGAAATCGTAAATTCACGGGAA 59.001 37.500 0.72 0.72 42.19 3.97
163 164 5.470777 ACTGAAATCGTAAATTCACGGGAAA 59.529 36.000 3.14 0.00 42.19 3.13
164 165 6.016943 ACTGAAATCGTAAATTCACGGGAAAA 60.017 34.615 3.14 0.00 42.19 2.29
165 166 6.736123 TGAAATCGTAAATTCACGGGAAAAA 58.264 32.000 3.14 0.00 42.19 1.94
186 187 5.560966 AAACGTATTGTGATGATGAACCC 57.439 39.130 0.00 0.00 0.00 4.11
187 188 4.214986 ACGTATTGTGATGATGAACCCA 57.785 40.909 0.00 0.00 0.00 4.51
188 189 3.938963 ACGTATTGTGATGATGAACCCAC 59.061 43.478 0.00 0.00 0.00 4.61
189 190 3.001228 CGTATTGTGATGATGAACCCACG 59.999 47.826 0.00 0.00 32.58 4.94
190 191 1.819928 TTGTGATGATGAACCCACGG 58.180 50.000 0.00 0.00 32.58 4.94
191 192 0.980423 TGTGATGATGAACCCACGGA 59.020 50.000 0.00 0.00 32.58 4.69
192 193 1.066215 TGTGATGATGAACCCACGGAG 60.066 52.381 0.00 0.00 32.58 4.63
194 195 1.207089 TGATGATGAACCCACGGAGTC 59.793 52.381 0.00 0.00 41.61 3.36
195 196 1.207089 GATGATGAACCCACGGAGTCA 59.793 52.381 0.00 0.00 41.61 3.41
196 197 1.052617 TGATGAACCCACGGAGTCAA 58.947 50.000 0.00 0.00 41.61 3.18
197 198 1.628340 TGATGAACCCACGGAGTCAAT 59.372 47.619 0.00 0.00 41.61 2.57
198 199 2.280628 GATGAACCCACGGAGTCAATC 58.719 52.381 0.00 0.00 41.61 2.67
199 200 0.323629 TGAACCCACGGAGTCAATCC 59.676 55.000 0.00 0.00 41.61 3.01
212 213 6.619801 GGAGTCAATCCGTGCTTTATTATT 57.380 37.500 0.00 0.00 38.67 1.40
213 214 7.724305 GGAGTCAATCCGTGCTTTATTATTA 57.276 36.000 0.00 0.00 38.67 0.98
214 215 7.797819 GGAGTCAATCCGTGCTTTATTATTAG 58.202 38.462 0.00 0.00 38.67 1.73
215 216 7.095187 GGAGTCAATCCGTGCTTTATTATTAGG 60.095 40.741 0.00 0.00 38.67 2.69
216 217 6.710744 AGTCAATCCGTGCTTTATTATTAGGG 59.289 38.462 0.00 0.00 0.00 3.53
217 218 6.708949 GTCAATCCGTGCTTTATTATTAGGGA 59.291 38.462 0.00 0.00 0.00 4.20
218 219 7.227910 GTCAATCCGTGCTTTATTATTAGGGAA 59.772 37.037 0.00 0.00 0.00 3.97
219 220 7.776030 TCAATCCGTGCTTTATTATTAGGGAAA 59.224 33.333 0.00 0.00 0.00 3.13
220 221 7.745620 ATCCGTGCTTTATTATTAGGGAAAG 57.254 36.000 0.00 0.00 33.05 2.62
221 222 6.891388 TCCGTGCTTTATTATTAGGGAAAGA 58.109 36.000 0.00 0.00 31.83 2.52
222 223 7.514721 TCCGTGCTTTATTATTAGGGAAAGAT 58.485 34.615 0.00 0.00 31.83 2.40
223 224 7.996644 TCCGTGCTTTATTATTAGGGAAAGATT 59.003 33.333 0.00 0.00 31.83 2.40
224 225 9.280174 CCGTGCTTTATTATTAGGGAAAGATTA 57.720 33.333 0.00 0.00 31.83 1.75
227 228 9.807921 TGCTTTATTATTAGGGAAAGATTAGGG 57.192 33.333 0.00 0.00 31.83 3.53
234 235 9.699106 TTATTAGGGAAAGATTAGGGAATAGGT 57.301 33.333 0.00 0.00 0.00 3.08
236 237 9.699106 ATTAGGGAAAGATTAGGGAATAGGTAA 57.301 33.333 0.00 0.00 0.00 2.85
237 238 9.523547 TTAGGGAAAGATTAGGGAATAGGTAAA 57.476 33.333 0.00 0.00 0.00 2.01
238 239 8.415392 AGGGAAAGATTAGGGAATAGGTAAAA 57.585 34.615 0.00 0.00 0.00 1.52
239 240 8.852894 AGGGAAAGATTAGGGAATAGGTAAAAA 58.147 33.333 0.00 0.00 0.00 1.94
260 261 6.490877 AAAAACTGAAAGCGTAAATTCACG 57.509 33.333 0.00 0.00 44.71 4.35
261 262 5.412526 AAACTGAAAGCGTAAATTCACGA 57.587 34.783 5.02 0.00 43.60 4.35
262 263 4.647291 ACTGAAAGCGTAAATTCACGAG 57.353 40.909 5.02 0.00 43.60 4.18
263 264 4.304110 ACTGAAAGCGTAAATTCACGAGA 58.696 39.130 5.02 0.00 43.60 4.04
264 265 4.748102 ACTGAAAGCGTAAATTCACGAGAA 59.252 37.500 5.02 0.00 43.60 2.87
265 266 5.107453 ACTGAAAGCGTAAATTCACGAGAAG 60.107 40.000 5.02 0.00 43.60 2.85
266 267 4.986034 TGAAAGCGTAAATTCACGAGAAGA 59.014 37.500 5.02 0.00 44.69 2.87
267 268 5.464057 TGAAAGCGTAAATTCACGAGAAGAA 59.536 36.000 5.02 0.00 44.69 2.52
268 269 5.517037 AAGCGTAAATTCACGAGAAGAAG 57.483 39.130 5.02 0.00 44.69 2.85
269 270 3.368236 AGCGTAAATTCACGAGAAGAAGC 59.632 43.478 5.02 3.64 44.69 3.86
270 271 3.778070 GCGTAAATTCACGAGAAGAAGCG 60.778 47.826 5.02 5.05 44.69 4.68
271 272 3.364023 CGTAAATTCACGAGAAGAAGCGT 59.636 43.478 0.00 0.00 44.69 5.07
272 273 4.556135 CGTAAATTCACGAGAAGAAGCGTA 59.444 41.667 0.00 0.00 44.69 4.42
273 274 5.229469 CGTAAATTCACGAGAAGAAGCGTAT 59.771 40.000 0.00 0.00 44.69 3.06
274 275 6.237490 CGTAAATTCACGAGAAGAAGCGTATT 60.237 38.462 0.00 0.00 44.69 1.89
275 276 5.456192 AATTCACGAGAAGAAGCGTATTG 57.544 39.130 1.01 0.00 38.92 1.90
276 277 3.842732 TCACGAGAAGAAGCGTATTGA 57.157 42.857 0.00 0.00 38.92 2.57
277 278 3.759418 TCACGAGAAGAAGCGTATTGAG 58.241 45.455 0.00 0.00 38.92 3.02
278 279 2.854777 CACGAGAAGAAGCGTATTGAGG 59.145 50.000 0.00 0.00 38.92 3.86
279 280 2.492484 ACGAGAAGAAGCGTATTGAGGT 59.508 45.455 0.00 0.00 39.21 3.85
280 281 3.693085 ACGAGAAGAAGCGTATTGAGGTA 59.307 43.478 0.00 0.00 39.21 3.08
281 282 4.157289 ACGAGAAGAAGCGTATTGAGGTAA 59.843 41.667 0.00 0.00 39.21 2.85
282 283 5.100259 CGAGAAGAAGCGTATTGAGGTAAA 58.900 41.667 0.00 0.00 0.00 2.01
283 284 5.575606 CGAGAAGAAGCGTATTGAGGTAAAA 59.424 40.000 0.00 0.00 0.00 1.52
284 285 6.090358 CGAGAAGAAGCGTATTGAGGTAAAAA 59.910 38.462 0.00 0.00 0.00 1.94
317 318 4.934075 GTAAATTTACGGGAAGAAGCGT 57.066 40.909 12.39 0.00 0.00 5.07
319 320 6.594284 GTAAATTTACGGGAAGAAGCGTAT 57.406 37.500 12.39 0.00 0.00 3.06
320 321 7.008440 GTAAATTTACGGGAAGAAGCGTATT 57.992 36.000 12.39 0.00 0.00 1.89
321 322 5.479716 AATTTACGGGAAGAAGCGTATTG 57.520 39.130 0.00 0.00 0.00 1.90
322 323 3.598019 TTACGGGAAGAAGCGTATTGT 57.402 42.857 0.00 0.00 0.00 2.71
323 324 1.722011 ACGGGAAGAAGCGTATTGTG 58.278 50.000 0.00 0.00 0.00 3.33
324 325 1.274167 ACGGGAAGAAGCGTATTGTGA 59.726 47.619 0.00 0.00 0.00 3.58
325 326 1.659098 CGGGAAGAAGCGTATTGTGAC 59.341 52.381 0.00 0.00 0.00 3.67
326 327 1.659098 GGGAAGAAGCGTATTGTGACG 59.341 52.381 0.00 0.00 45.70 4.35
327 328 1.659098 GGAAGAAGCGTATTGTGACGG 59.341 52.381 0.00 0.00 43.13 4.79
332 333 3.941194 GCGTATTGTGACGGTGAAC 57.059 52.632 0.00 0.00 43.13 3.18
333 334 1.425412 GCGTATTGTGACGGTGAACT 58.575 50.000 0.00 0.00 43.13 3.01
334 335 1.389106 GCGTATTGTGACGGTGAACTC 59.611 52.381 0.00 0.00 43.13 3.01
335 336 2.668250 CGTATTGTGACGGTGAACTCA 58.332 47.619 0.00 0.00 39.19 3.41
336 337 3.250744 CGTATTGTGACGGTGAACTCAT 58.749 45.455 0.00 0.00 39.19 2.90
337 338 3.060761 CGTATTGTGACGGTGAACTCATG 59.939 47.826 0.00 0.00 39.19 3.07
338 339 1.877637 TTGTGACGGTGAACTCATGG 58.122 50.000 0.00 0.00 0.00 3.66
339 340 1.044611 TGTGACGGTGAACTCATGGA 58.955 50.000 0.00 0.00 0.00 3.41
340 341 1.000843 TGTGACGGTGAACTCATGGAG 59.999 52.381 0.00 0.00 35.52 3.86
341 342 1.000955 GTGACGGTGAACTCATGGAGT 59.999 52.381 0.00 0.00 45.64 3.85
342 343 1.272490 TGACGGTGAACTCATGGAGTC 59.728 52.381 0.00 0.00 42.59 3.36
343 344 1.272490 GACGGTGAACTCATGGAGTCA 59.728 52.381 0.00 0.00 42.59 3.41
344 345 1.691976 ACGGTGAACTCATGGAGTCAA 59.308 47.619 0.00 0.00 42.59 3.18
345 346 2.303022 ACGGTGAACTCATGGAGTCAAT 59.697 45.455 0.00 0.00 42.59 2.57
346 347 2.932614 CGGTGAACTCATGGAGTCAATC 59.067 50.000 0.00 0.00 42.59 2.67
360 361 6.619801 GGAGTCAATCCGTGCTTTATTATT 57.380 37.500 0.00 0.00 38.67 1.40
361 362 7.724305 GGAGTCAATCCGTGCTTTATTATTA 57.276 36.000 0.00 0.00 38.67 0.98
362 363 7.797819 GGAGTCAATCCGTGCTTTATTATTAG 58.202 38.462 0.00 0.00 38.67 1.73
363 364 7.095187 GGAGTCAATCCGTGCTTTATTATTAGG 60.095 40.741 0.00 0.00 38.67 2.69
364 365 6.710744 AGTCAATCCGTGCTTTATTATTAGGG 59.289 38.462 0.00 0.00 0.00 3.53
365 366 6.708949 GTCAATCCGTGCTTTATTATTAGGGA 59.291 38.462 0.00 0.00 0.00 4.20
366 367 7.227910 GTCAATCCGTGCTTTATTATTAGGGAA 59.772 37.037 0.00 0.00 0.00 3.97
367 368 7.776030 TCAATCCGTGCTTTATTATTAGGGAAA 59.224 33.333 0.00 0.00 0.00 3.13
368 369 7.745620 ATCCGTGCTTTATTATTAGGGAAAG 57.254 36.000 0.00 0.00 33.05 2.62
369 370 6.891388 TCCGTGCTTTATTATTAGGGAAAGA 58.109 36.000 0.00 0.00 31.83 2.52
370 371 7.514721 TCCGTGCTTTATTATTAGGGAAAGAT 58.485 34.615 0.00 0.00 31.83 2.40
371 372 7.996644 TCCGTGCTTTATTATTAGGGAAAGATT 59.003 33.333 0.00 0.00 31.83 2.40
372 373 9.280174 CCGTGCTTTATTATTAGGGAAAGATTA 57.720 33.333 0.00 0.00 31.83 1.75
375 376 9.807921 TGCTTTATTATTAGGGAAAGATTAGGG 57.192 33.333 0.00 0.00 31.83 3.53
385 386 9.510062 TTAGGGAAAGATTAGGGAATAAGTACA 57.490 33.333 0.00 0.00 0.00 2.90
386 387 8.401955 AGGGAAAGATTAGGGAATAAGTACAA 57.598 34.615 0.00 0.00 0.00 2.41
387 388 8.842764 AGGGAAAGATTAGGGAATAAGTACAAA 58.157 33.333 0.00 0.00 0.00 2.83
388 389 9.470399 GGGAAAGATTAGGGAATAAGTACAAAA 57.530 33.333 0.00 0.00 0.00 2.44
393 394 9.853177 AGATTAGGGAATAAGTACAAAATCCTG 57.147 33.333 0.00 0.00 0.00 3.86
394 395 9.847224 GATTAGGGAATAAGTACAAAATCCTGA 57.153 33.333 0.00 0.00 0.00 3.86
397 398 8.581253 AGGGAATAAGTACAAAATCCTGAAAG 57.419 34.615 0.00 0.00 0.00 2.62
398 399 7.122799 AGGGAATAAGTACAAAATCCTGAAAGC 59.877 37.037 0.00 0.00 0.00 3.51
399 400 6.967199 GGAATAAGTACAAAATCCTGAAAGCG 59.033 38.462 0.00 0.00 0.00 4.68
400 401 7.361799 GGAATAAGTACAAAATCCTGAAAGCGT 60.362 37.037 0.00 0.00 0.00 5.07
401 402 8.556213 AATAAGTACAAAATCCTGAAAGCGTA 57.444 30.769 0.00 0.00 0.00 4.42
402 403 6.870971 AAGTACAAAATCCTGAAAGCGTAA 57.129 33.333 0.00 0.00 0.00 3.18
403 404 6.870971 AGTACAAAATCCTGAAAGCGTAAA 57.129 33.333 0.00 0.00 0.00 2.01
404 405 7.448748 AGTACAAAATCCTGAAAGCGTAAAT 57.551 32.000 0.00 0.00 0.00 1.40
405 406 7.882179 AGTACAAAATCCTGAAAGCGTAAATT 58.118 30.769 0.00 0.00 0.00 1.82
406 407 8.021396 AGTACAAAATCCTGAAAGCGTAAATTC 58.979 33.333 0.00 0.00 0.00 2.17
407 408 6.744112 ACAAAATCCTGAAAGCGTAAATTCA 58.256 32.000 0.00 0.00 34.57 2.57
408 409 6.640907 ACAAAATCCTGAAAGCGTAAATTCAC 59.359 34.615 0.00 0.00 32.46 3.18
409 410 4.600012 ATCCTGAAAGCGTAAATTCACG 57.400 40.909 0.00 0.00 44.71 4.35
410 411 2.739913 TCCTGAAAGCGTAAATTCACGG 59.260 45.455 2.77 0.00 42.18 4.94
411 412 2.739913 CCTGAAAGCGTAAATTCACGGA 59.260 45.455 2.77 0.00 42.18 4.69
412 413 3.187637 CCTGAAAGCGTAAATTCACGGAA 59.812 43.478 2.77 0.00 42.18 4.30
413 414 4.319911 CCTGAAAGCGTAAATTCACGGAAA 60.320 41.667 2.77 0.00 42.18 3.13
414 415 4.778904 TGAAAGCGTAAATTCACGGAAAG 58.221 39.130 2.77 0.00 42.18 2.62
415 416 4.512198 TGAAAGCGTAAATTCACGGAAAGA 59.488 37.500 2.77 0.00 42.18 2.52
416 417 5.007823 TGAAAGCGTAAATTCACGGAAAGAA 59.992 36.000 2.77 0.00 42.18 2.52
417 418 4.663636 AGCGTAAATTCACGGAAAGAAG 57.336 40.909 2.77 0.00 42.18 2.85
418 419 3.120304 AGCGTAAATTCACGGAAAGAAGC 60.120 43.478 2.77 0.00 42.18 3.86
419 420 3.404564 CGTAAATTCACGGAAAGAAGCG 58.595 45.455 0.00 0.00 38.26 4.68
420 421 2.331809 AAATTCACGGAAAGAAGCGC 57.668 45.000 0.00 0.00 0.00 5.92
421 422 1.234821 AATTCACGGAAAGAAGCGCA 58.765 45.000 11.47 0.00 0.00 6.09
422 423 1.453155 ATTCACGGAAAGAAGCGCAT 58.547 45.000 11.47 0.00 0.00 4.73
423 424 1.234821 TTCACGGAAAGAAGCGCATT 58.765 45.000 11.47 0.00 0.00 3.56
424 425 0.516877 TCACGGAAAGAAGCGCATTG 59.483 50.000 11.47 0.00 0.00 2.82
425 426 0.238289 CACGGAAAGAAGCGCATTGT 59.762 50.000 11.47 0.00 0.00 2.71
426 427 0.238289 ACGGAAAGAAGCGCATTGTG 59.762 50.000 11.47 0.00 0.00 3.33
427 428 0.516877 CGGAAAGAAGCGCATTGTGA 59.483 50.000 11.47 0.00 0.00 3.58
428 429 1.725931 CGGAAAGAAGCGCATTGTGAC 60.726 52.381 11.47 0.00 0.00 3.67
429 430 1.595609 GAAAGAAGCGCATTGTGACG 58.404 50.000 11.47 0.00 0.00 4.35
430 431 0.238289 AAAGAAGCGCATTGTGACGG 59.762 50.000 11.47 0.00 0.00 4.79
431 432 0.884704 AAGAAGCGCATTGTGACGGT 60.885 50.000 11.47 0.00 42.60 4.83
432 433 1.154413 GAAGCGCATTGTGACGGTG 60.154 57.895 11.47 0.00 40.32 4.94
433 434 1.565156 GAAGCGCATTGTGACGGTGA 61.565 55.000 11.47 0.00 40.32 4.02
434 435 0.955428 AAGCGCATTGTGACGGTGAT 60.955 50.000 11.47 0.00 40.32 3.06
435 436 1.060937 GCGCATTGTGACGGTGATC 59.939 57.895 0.30 0.00 0.00 2.92
436 437 1.715585 CGCATTGTGACGGTGATCC 59.284 57.895 0.00 0.00 0.00 3.36
437 438 1.705337 CGCATTGTGACGGTGATCCC 61.705 60.000 0.00 0.00 0.00 3.85
438 439 0.676466 GCATTGTGACGGTGATCCCA 60.676 55.000 0.00 0.00 0.00 4.37
439 440 1.086696 CATTGTGACGGTGATCCCAC 58.913 55.000 0.00 0.00 42.46 4.61
440 441 0.391130 ATTGTGACGGTGATCCCACG 60.391 55.000 0.00 0.00 44.09 4.94
441 442 2.125673 GTGACGGTGATCCCACGG 60.126 66.667 5.90 0.00 44.09 4.94
442 443 2.283316 TGACGGTGATCCCACGGA 60.283 61.111 9.54 0.00 43.69 4.69
443 444 1.909287 TGACGGTGATCCCACGGAA 60.909 57.895 9.54 0.00 43.69 4.30
444 445 1.261938 TGACGGTGATCCCACGGAAT 61.262 55.000 9.54 0.00 43.69 3.01
445 446 0.529992 GACGGTGATCCCACGGAATC 60.530 60.000 9.54 0.00 43.69 2.52
446 447 1.261938 ACGGTGATCCCACGGAATCA 61.262 55.000 9.54 0.00 43.69 2.57
447 448 0.107897 CGGTGATCCCACGGAATCAA 60.108 55.000 0.00 0.00 43.69 2.57
448 449 1.475034 CGGTGATCCCACGGAATCAAT 60.475 52.381 0.00 0.00 43.69 2.57
449 450 2.222027 GGTGATCCCACGGAATCAATC 58.778 52.381 0.00 0.00 44.09 2.67
450 451 2.158755 GGTGATCCCACGGAATCAATCT 60.159 50.000 0.00 0.00 44.09 2.40
451 452 2.874701 GTGATCCCACGGAATCAATCTG 59.125 50.000 0.00 0.00 40.53 2.90
462 463 7.807977 ACGGAATCAATCTGTGCTTTATTAT 57.192 32.000 0.00 0.00 46.12 1.28
463 464 8.225603 ACGGAATCAATCTGTGCTTTATTATT 57.774 30.769 0.00 0.00 46.12 1.40
464 465 9.337396 ACGGAATCAATCTGTGCTTTATTATTA 57.663 29.630 0.00 0.00 46.12 0.98
465 466 9.817365 CGGAATCAATCTGTGCTTTATTATTAG 57.183 33.333 0.00 0.00 0.00 1.73
507 508 5.182487 AGCTTTCCGTTTTCATTGGTTTTT 58.818 33.333 0.00 0.00 0.00 1.94
521 522 4.048241 TGGTTTTTCTTAGGTTTTGGCG 57.952 40.909 0.00 0.00 0.00 5.69
522 523 3.700038 TGGTTTTTCTTAGGTTTTGGCGA 59.300 39.130 0.00 0.00 0.00 5.54
523 524 4.159879 TGGTTTTTCTTAGGTTTTGGCGAA 59.840 37.500 0.00 0.00 0.00 4.70
524 525 4.743151 GGTTTTTCTTAGGTTTTGGCGAAG 59.257 41.667 0.00 0.00 0.00 3.79
526 527 5.432885 TTTTCTTAGGTTTTGGCGAAGAG 57.567 39.130 0.00 0.00 0.00 2.85
528 536 4.345859 TCTTAGGTTTTGGCGAAGAGAA 57.654 40.909 0.00 0.00 0.00 2.87
534 542 3.981416 GGTTTTGGCGAAGAGAATTGTTC 59.019 43.478 0.00 0.00 0.00 3.18
535 543 4.261614 GGTTTTGGCGAAGAGAATTGTTCT 60.262 41.667 0.00 0.00 44.21 3.01
536 544 5.281727 GTTTTGGCGAAGAGAATTGTTCTT 58.718 37.500 2.30 2.30 40.87 2.52
561 569 3.819564 AAAAGGGGAAGCAGTGTTTTC 57.180 42.857 0.00 0.00 0.00 2.29
582 601 4.389374 TCTGTGAGTAAAGGGAAAAGCAG 58.611 43.478 0.00 0.00 0.00 4.24
609 628 1.964373 CCAGACCGAACGTTTGGGG 60.964 63.158 32.97 22.57 41.99 4.96
610 629 2.281276 AGACCGAACGTTTGGGGC 60.281 61.111 32.97 24.36 36.69 5.80
611 630 2.592287 GACCGAACGTTTGGGGCA 60.592 61.111 32.97 0.00 36.41 5.36
613 632 1.520600 GACCGAACGTTTGGGGCATT 61.521 55.000 32.97 15.78 36.41 3.56
614 633 0.250814 ACCGAACGTTTGGGGCATTA 60.251 50.000 32.97 0.00 35.94 1.90
615 634 1.099689 CCGAACGTTTGGGGCATTAT 58.900 50.000 24.79 0.00 0.00 1.28
616 635 1.474879 CCGAACGTTTGGGGCATTATT 59.525 47.619 24.79 0.00 0.00 1.40
619 638 1.190643 ACGTTTGGGGCATTATTGGG 58.809 50.000 0.00 0.00 0.00 4.12
620 639 0.179086 CGTTTGGGGCATTATTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
663 682 3.538591 TCTTGAGCTAACATGGAGCATG 58.461 45.455 20.24 0.00 46.18 4.06
674 693 3.188786 GAGCATGTCCGACGCCAC 61.189 66.667 0.00 0.00 0.00 5.01
692 711 1.942657 CACATGTTTCTATGCCTCCGG 59.057 52.381 0.00 0.00 0.00 5.14
717 736 0.895530 TGACCCACTAAGCGAGGAAG 59.104 55.000 0.00 0.00 0.00 3.46
737 756 3.549794 AGCCATTGACCTAGCTCATTTC 58.450 45.455 0.00 0.00 0.00 2.17
742 761 2.184533 TGACCTAGCTCATTTCCCGAA 58.815 47.619 0.00 0.00 0.00 4.30
762 781 4.438744 CGAAGGCCAGAACAATTATTGTCC 60.439 45.833 11.24 7.73 44.59 4.02
798 831 0.458889 CCCATCACCGCATGCAAAAG 60.459 55.000 19.57 5.47 0.00 2.27
800 833 1.067706 CCATCACCGCATGCAAAAGAA 60.068 47.619 19.57 0.00 0.00 2.52
803 836 0.314935 CACCGCATGCAAAAGAACCT 59.685 50.000 19.57 0.00 0.00 3.50
818 851 4.408821 CCTTGCCAGTAGCCGCCA 62.409 66.667 0.00 0.00 42.71 5.69
847 880 2.099652 CTGTGTTCTCTGTCCGGCCA 62.100 60.000 2.24 0.00 0.00 5.36
861 894 2.788640 GGCCACTACGCCGATACCA 61.789 63.158 0.00 0.00 39.64 3.25
864 897 1.298863 CACTACGCCGATACCACCG 60.299 63.158 0.00 0.00 0.00 4.94
865 898 2.354305 CTACGCCGATACCACCGC 60.354 66.667 0.00 0.00 0.00 5.68
866 899 4.254672 TACGCCGATACCACCGCG 62.255 66.667 0.00 0.00 34.57 6.46
890 923 2.363807 CGTGCCACGTTCTCAGATC 58.636 57.895 9.53 0.00 36.74 2.75
899 932 0.037326 GTTCTCAGATCACCACCGCA 60.037 55.000 0.00 0.00 0.00 5.69
900 933 0.037326 TTCTCAGATCACCACCGCAC 60.037 55.000 0.00 0.00 0.00 5.34
914 947 2.956987 GCACCGCATATGCATCCC 59.043 61.111 26.52 8.82 42.88 3.85
922 955 3.370421 CCGCATATGCATCCCCTACATAA 60.370 47.826 26.52 0.00 42.21 1.90
947 980 1.085091 GGCTTCACACTGCTCAGATG 58.915 55.000 3.60 2.26 0.00 2.90
948 981 0.447011 GCTTCACACTGCTCAGATGC 59.553 55.000 3.60 0.00 0.00 3.91
952 985 1.376942 ACACTGCTCAGATGCTGCC 60.377 57.895 3.60 0.00 35.70 4.85
1155 1188 4.758251 CGCCGCCACCACATCTCA 62.758 66.667 0.00 0.00 0.00 3.27
1167 1200 2.389059 CACATCTCATCGATCGTGACC 58.611 52.381 15.94 0.00 35.24 4.02
1241 1274 3.516700 GCCAAGGGGTTCTACAACTACTA 59.483 47.826 0.00 0.00 36.17 1.82
1253 1286 4.762956 ACAACTACTACTCCTTCGTCAC 57.237 45.455 0.00 0.00 0.00 3.67
1353 1386 2.202987 CTGGCGCAGATCTCCCAC 60.203 66.667 10.83 0.00 32.44 4.61
1455 1488 1.731613 CAACTACTGCGACGCCGAA 60.732 57.895 18.69 0.87 38.22 4.30
1479 1512 4.803426 GAGTGGCCCTGCGTCGAG 62.803 72.222 0.00 0.00 0.00 4.04
1548 1585 4.919754 GCATTCCACAAAGAAACTCATCAC 59.080 41.667 0.00 0.00 0.00 3.06
1557 1594 1.002087 GAAACTCATCACTCCCGGTGT 59.998 52.381 0.00 0.00 45.50 4.16
1560 1597 1.303806 TCATCACTCCCGGTGTCGA 60.304 57.895 0.00 0.58 45.50 4.20
1606 1646 1.421410 CCGCACGCCACTATCTCAAC 61.421 60.000 0.00 0.00 0.00 3.18
1702 1746 3.592814 TGGCGAGCGATCCGGTAG 61.593 66.667 0.00 0.00 37.83 3.18
1808 1852 4.379243 CACCGAGGCCGACAAGCT 62.379 66.667 0.00 0.00 38.22 3.74
2006 2057 2.094545 ACTCGTAACCAACCGATACACC 60.095 50.000 0.00 0.00 31.90 4.16
2060 2111 2.821378 TGCTTAGACATGCATGCAAGTT 59.179 40.909 27.47 19.06 33.94 2.66
2064 2115 2.153645 AGACATGCATGCAAGTTTCGA 58.846 42.857 27.47 0.87 0.00 3.71
2069 2120 4.201851 ACATGCATGCAAGTTTCGATCTAC 60.202 41.667 26.68 0.00 0.00 2.59
2077 2128 5.637810 TGCAAGTTTCGATCTACTTTACCAG 59.362 40.000 5.62 0.00 32.50 4.00
2136 2187 2.633481 ACGAAACCTTCTGGCTTCTAGT 59.367 45.455 0.00 0.00 36.54 2.57
2137 2188 3.830755 ACGAAACCTTCTGGCTTCTAGTA 59.169 43.478 0.00 0.00 36.54 1.82
2138 2189 4.082136 ACGAAACCTTCTGGCTTCTAGTAG 60.082 45.833 0.00 0.00 36.54 2.57
2163 2214 8.043710 AGCTAATTGTAGGAATGCTATGTATCC 58.956 37.037 0.00 0.00 0.00 2.59
2182 2233 3.807553 TCCGGAAAACCTTTTTACTCGT 58.192 40.909 0.00 0.00 0.00 4.18
2204 2255 3.450817 TGGGATATTCGTTTCTGAGCTCA 59.549 43.478 17.19 17.19 0.00 4.26
2243 2294 1.217001 TCATATCCGTTCGCATGCAC 58.783 50.000 19.57 8.37 0.00 4.57
2261 2312 2.331893 CGAGGATTTGTGCCCGCAA 61.332 57.895 0.00 0.00 0.00 4.85
2264 2315 1.748493 GAGGATTTGTGCCCGCAATTA 59.252 47.619 0.00 0.00 0.00 1.40
2350 2403 0.179145 CGACGGAGCCGAAACAGTAT 60.179 55.000 16.83 0.00 42.83 2.12
2397 2462 0.243636 GGCATTTTCCTGTTCCACCG 59.756 55.000 0.00 0.00 0.00 4.94
2403 2468 2.358737 CCTGTTCCACCGTGAGCC 60.359 66.667 0.00 0.00 0.00 4.70
2419 2490 4.742201 CCGTGGCCGTGACTCAGG 62.742 72.222 0.00 0.00 0.00 3.86
2493 2564 0.622665 ATCCTGCTCCCCTTCACAAG 59.377 55.000 0.00 0.00 0.00 3.16
2502 2573 4.807643 GCTCCCCTTCACAAGAAACACTAT 60.808 45.833 0.00 0.00 32.35 2.12
2512 2583 7.703328 TCACAAGAAACACTATCCAGAAAAAC 58.297 34.615 0.00 0.00 0.00 2.43
2515 2586 4.760204 AGAAACACTATCCAGAAAAACCCG 59.240 41.667 0.00 0.00 0.00 5.28
2516 2587 3.782656 ACACTATCCAGAAAAACCCGT 57.217 42.857 0.00 0.00 0.00 5.28
2518 2589 3.818773 ACACTATCCAGAAAAACCCGTTG 59.181 43.478 0.00 0.00 0.00 4.10
2519 2590 2.817844 ACTATCCAGAAAAACCCGTTGC 59.182 45.455 0.00 0.00 0.00 4.17
2521 2592 1.007849 CCAGAAAAACCCGTTGCCG 60.008 57.895 0.00 0.00 0.00 5.69
2552 2625 1.811266 CGTCTTCCGCCATGTCTGG 60.811 63.158 0.00 0.00 46.17 3.86
2558 2631 3.049674 CGCCATGTCTGGTGCGTT 61.050 61.111 3.94 0.00 45.59 4.84
2561 2634 0.031994 GCCATGTCTGGTGCGTTTTT 59.968 50.000 0.00 0.00 45.10 1.94
2567 2640 2.290367 TGTCTGGTGCGTTTTTCTCATG 59.710 45.455 0.00 0.00 0.00 3.07
2577 2650 3.120991 CGTTTTTCTCATGTCTCACCGAC 60.121 47.826 0.00 0.00 43.14 4.79
2635 2708 8.597662 AAAACTGCAGTTCTAAAACGATAGTA 57.402 30.769 31.20 0.00 43.67 1.82
2721 2795 2.167693 AGTGCGTATGAAAAGGATCCGA 59.832 45.455 5.98 0.00 0.00 4.55
2761 2858 1.961277 CGTTCTCTTGCCGCAACCT 60.961 57.895 0.38 0.00 0.00 3.50
2797 2894 2.642254 CGTCTGGCCTCCACCGTTA 61.642 63.158 3.32 0.00 0.00 3.18
2810 2907 2.338500 CACCGTTAGTCAAGCTCTTCC 58.662 52.381 0.00 0.00 0.00 3.46
2914 3011 4.738998 CAAGGTCCGGCCATGGCA 62.739 66.667 36.56 15.51 44.11 4.92
2952 3050 0.456221 CGGTCTATCGGCTGACAGTT 59.544 55.000 0.00 0.00 35.11 3.16
2953 3051 1.135083 CGGTCTATCGGCTGACAGTTT 60.135 52.381 0.00 0.00 35.11 2.66
2962 3061 3.262405 TCGGCTGACAGTTTTTATACCCT 59.738 43.478 3.99 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.426598 AGATGGGATGGGCACTAATGG 59.573 52.381 0.00 0.00 0.00 3.16
6 7 2.965671 AGATGGGATGGGCACTAATG 57.034 50.000 0.00 0.00 0.00 1.90
7 8 4.164988 GCTATAGATGGGATGGGCACTAAT 59.835 45.833 3.21 0.00 0.00 1.73
8 9 3.519510 GCTATAGATGGGATGGGCACTAA 59.480 47.826 3.21 0.00 0.00 2.24
9 10 3.107601 GCTATAGATGGGATGGGCACTA 58.892 50.000 3.21 0.00 0.00 2.74
10 11 1.912043 GCTATAGATGGGATGGGCACT 59.088 52.381 3.21 0.00 0.00 4.40
11 12 1.065126 GGCTATAGATGGGATGGGCAC 60.065 57.143 3.21 0.00 31.61 5.01
12 13 1.289160 GGCTATAGATGGGATGGGCA 58.711 55.000 3.21 0.00 31.61 5.36
13 14 0.548510 GGGCTATAGATGGGATGGGC 59.451 60.000 3.21 0.00 0.00 5.36
14 15 2.277008 AGGGCTATAGATGGGATGGG 57.723 55.000 3.21 0.00 0.00 4.00
15 16 4.568592 GGAAAAGGGCTATAGATGGGATGG 60.569 50.000 3.21 0.00 0.00 3.51
16 17 4.290722 AGGAAAAGGGCTATAGATGGGATG 59.709 45.833 3.21 0.00 0.00 3.51
17 18 4.517283 AGGAAAAGGGCTATAGATGGGAT 58.483 43.478 3.21 0.00 0.00 3.85
18 19 3.954662 AGGAAAAGGGCTATAGATGGGA 58.045 45.455 3.21 0.00 0.00 4.37
19 20 4.846940 ACTAGGAAAAGGGCTATAGATGGG 59.153 45.833 3.21 0.00 0.00 4.00
20 21 6.726764 ACTACTAGGAAAAGGGCTATAGATGG 59.273 42.308 3.21 0.00 0.00 3.51
21 22 7.233757 ACACTACTAGGAAAAGGGCTATAGATG 59.766 40.741 3.21 0.00 0.00 2.90
22 23 7.306781 ACACTACTAGGAAAAGGGCTATAGAT 58.693 38.462 3.21 0.00 0.00 1.98
23 24 6.680540 ACACTACTAGGAAAAGGGCTATAGA 58.319 40.000 3.21 0.00 0.00 1.98
24 25 6.294065 CGACACTACTAGGAAAAGGGCTATAG 60.294 46.154 0.00 0.00 0.00 1.31
25 26 5.533903 CGACACTACTAGGAAAAGGGCTATA 59.466 44.000 0.00 0.00 0.00 1.31
26 27 4.341520 CGACACTACTAGGAAAAGGGCTAT 59.658 45.833 0.00 0.00 0.00 2.97
27 28 3.698040 CGACACTACTAGGAAAAGGGCTA 59.302 47.826 0.00 0.00 0.00 3.93
28 29 2.496470 CGACACTACTAGGAAAAGGGCT 59.504 50.000 0.00 0.00 0.00 5.19
29 30 2.494870 TCGACACTACTAGGAAAAGGGC 59.505 50.000 0.00 0.00 0.00 5.19
30 31 5.127356 AGAATCGACACTACTAGGAAAAGGG 59.873 44.000 0.00 0.00 0.00 3.95
31 32 6.037098 CAGAATCGACACTACTAGGAAAAGG 58.963 44.000 0.00 0.00 0.00 3.11
32 33 6.037098 CCAGAATCGACACTACTAGGAAAAG 58.963 44.000 0.00 0.00 0.00 2.27
33 34 5.105473 CCCAGAATCGACACTACTAGGAAAA 60.105 44.000 0.00 0.00 0.00 2.29
34 35 4.401519 CCCAGAATCGACACTACTAGGAAA 59.598 45.833 0.00 0.00 0.00 3.13
35 36 3.952323 CCCAGAATCGACACTACTAGGAA 59.048 47.826 0.00 0.00 0.00 3.36
36 37 3.201487 TCCCAGAATCGACACTACTAGGA 59.799 47.826 0.00 0.00 0.00 2.94
37 38 3.552875 TCCCAGAATCGACACTACTAGG 58.447 50.000 0.00 0.00 0.00 3.02
38 39 4.022762 CCATCCCAGAATCGACACTACTAG 60.023 50.000 0.00 0.00 0.00 2.57
39 40 3.889538 CCATCCCAGAATCGACACTACTA 59.110 47.826 0.00 0.00 0.00 1.82
40 41 2.695666 CCATCCCAGAATCGACACTACT 59.304 50.000 0.00 0.00 0.00 2.57
41 42 2.693591 TCCATCCCAGAATCGACACTAC 59.306 50.000 0.00 0.00 0.00 2.73
42 43 2.693591 GTCCATCCCAGAATCGACACTA 59.306 50.000 0.00 0.00 0.00 2.74
43 44 1.482593 GTCCATCCCAGAATCGACACT 59.517 52.381 0.00 0.00 0.00 3.55
44 45 1.207089 TGTCCATCCCAGAATCGACAC 59.793 52.381 0.00 0.00 0.00 3.67
45 46 1.567357 TGTCCATCCCAGAATCGACA 58.433 50.000 0.00 0.00 0.00 4.35
46 47 2.918712 ATGTCCATCCCAGAATCGAC 57.081 50.000 0.00 0.00 0.00 4.20
47 48 3.304829 TGTATGTCCATCCCAGAATCGA 58.695 45.455 0.00 0.00 0.00 3.59
48 49 3.751479 TGTATGTCCATCCCAGAATCG 57.249 47.619 0.00 0.00 0.00 3.34
49 50 5.940470 GGTAATGTATGTCCATCCCAGAATC 59.060 44.000 0.00 0.00 0.00 2.52
50 51 5.372363 TGGTAATGTATGTCCATCCCAGAAT 59.628 40.000 0.00 0.00 0.00 2.40
51 52 4.724293 TGGTAATGTATGTCCATCCCAGAA 59.276 41.667 0.00 0.00 0.00 3.02
52 53 4.302930 TGGTAATGTATGTCCATCCCAGA 58.697 43.478 0.00 0.00 0.00 3.86
53 54 4.705110 TGGTAATGTATGTCCATCCCAG 57.295 45.455 0.00 0.00 0.00 4.45
54 55 5.458451 TTTGGTAATGTATGTCCATCCCA 57.542 39.130 0.00 0.00 0.00 4.37
55 56 6.783708 TTTTTGGTAATGTATGTCCATCCC 57.216 37.500 0.00 0.00 0.00 3.85
81 82 6.371825 GTGGTACTATTCTCTGACCTTTTTGG 59.628 42.308 0.00 0.00 42.93 3.28
82 83 6.371825 GGTGGTACTATTCTCTGACCTTTTTG 59.628 42.308 0.00 0.00 0.00 2.44
83 84 6.272558 AGGTGGTACTATTCTCTGACCTTTTT 59.727 38.462 0.00 0.00 0.00 1.94
84 85 5.785940 AGGTGGTACTATTCTCTGACCTTTT 59.214 40.000 0.00 0.00 0.00 2.27
85 86 5.342866 AGGTGGTACTATTCTCTGACCTTT 58.657 41.667 0.00 0.00 0.00 3.11
86 87 4.949121 AGGTGGTACTATTCTCTGACCTT 58.051 43.478 0.00 0.00 0.00 3.50
87 88 4.538738 GAGGTGGTACTATTCTCTGACCT 58.461 47.826 0.00 0.00 35.24 3.85
88 89 3.315749 CGAGGTGGTACTATTCTCTGACC 59.684 52.174 9.58 0.00 0.00 4.02
89 90 3.315749 CCGAGGTGGTACTATTCTCTGAC 59.684 52.174 9.58 0.00 0.00 3.51
90 91 3.201487 TCCGAGGTGGTACTATTCTCTGA 59.799 47.826 9.58 6.72 39.52 3.27
91 92 3.552875 TCCGAGGTGGTACTATTCTCTG 58.447 50.000 9.58 5.03 39.52 3.35
92 93 3.947612 TCCGAGGTGGTACTATTCTCT 57.052 47.619 9.58 0.00 39.52 3.10
93 94 3.890147 ACATCCGAGGTGGTACTATTCTC 59.110 47.826 0.00 0.00 39.52 2.87
94 95 3.912248 ACATCCGAGGTGGTACTATTCT 58.088 45.455 0.00 0.00 39.52 2.40
95 96 5.068636 TCTACATCCGAGGTGGTACTATTC 58.931 45.833 0.00 0.00 39.52 1.75
96 97 5.057843 TCTACATCCGAGGTGGTACTATT 57.942 43.478 0.00 0.00 39.52 1.73
97 98 4.719026 TCTACATCCGAGGTGGTACTAT 57.281 45.455 0.00 0.00 39.52 2.12
98 99 4.508551 TTCTACATCCGAGGTGGTACTA 57.491 45.455 0.00 0.00 39.52 1.82
99 100 3.377253 TTCTACATCCGAGGTGGTACT 57.623 47.619 0.00 0.00 39.52 2.73
100 101 4.460948 TTTTCTACATCCGAGGTGGTAC 57.539 45.455 0.00 0.00 39.52 3.34
101 102 6.795144 TTATTTTCTACATCCGAGGTGGTA 57.205 37.500 0.00 0.00 39.52 3.25
102 103 5.687166 TTATTTTCTACATCCGAGGTGGT 57.313 39.130 0.00 0.00 39.52 4.16
103 104 9.587772 CTATATTATTTTCTACATCCGAGGTGG 57.412 37.037 0.00 0.00 40.09 4.61
104 105 9.587772 CCTATATTATTTTCTACATCCGAGGTG 57.412 37.037 0.00 0.00 0.00 4.00
105 106 9.322769 ACCTATATTATTTTCTACATCCGAGGT 57.677 33.333 0.00 0.00 0.00 3.85
135 136 6.639279 CCCGTGAATTTACGATTTCAGTTTTT 59.361 34.615 22.77 0.00 46.46 1.94
136 137 6.016943 TCCCGTGAATTTACGATTTCAGTTTT 60.017 34.615 22.77 0.00 46.46 2.43
137 138 5.470777 TCCCGTGAATTTACGATTTCAGTTT 59.529 36.000 22.77 0.00 46.46 2.66
138 139 4.998672 TCCCGTGAATTTACGATTTCAGTT 59.001 37.500 22.77 0.00 46.46 3.16
139 140 4.571919 TCCCGTGAATTTACGATTTCAGT 58.428 39.130 22.77 0.00 46.46 3.41
140 141 5.539582 TTCCCGTGAATTTACGATTTCAG 57.460 39.130 22.77 5.98 46.46 3.02
141 142 5.943706 TTTCCCGTGAATTTACGATTTCA 57.056 34.783 22.77 1.60 46.46 2.69
162 163 6.015856 TGGGTTCATCATCACAATACGTTTTT 60.016 34.615 0.00 0.00 0.00 1.94
163 164 5.475220 TGGGTTCATCATCACAATACGTTTT 59.525 36.000 0.00 0.00 0.00 2.43
164 165 5.007034 TGGGTTCATCATCACAATACGTTT 58.993 37.500 0.00 0.00 0.00 3.60
165 166 4.394920 GTGGGTTCATCATCACAATACGTT 59.605 41.667 0.00 0.00 0.00 3.99
166 167 3.938963 GTGGGTTCATCATCACAATACGT 59.061 43.478 0.00 0.00 0.00 3.57
167 168 3.001228 CGTGGGTTCATCATCACAATACG 59.999 47.826 0.00 0.00 0.00 3.06
168 169 3.312421 CCGTGGGTTCATCATCACAATAC 59.688 47.826 0.00 0.00 0.00 1.89
169 170 3.198853 TCCGTGGGTTCATCATCACAATA 59.801 43.478 0.00 0.00 0.00 1.90
170 171 2.026356 TCCGTGGGTTCATCATCACAAT 60.026 45.455 0.00 0.00 0.00 2.71
171 172 1.349357 TCCGTGGGTTCATCATCACAA 59.651 47.619 0.00 0.00 0.00 3.33
172 173 0.980423 TCCGTGGGTTCATCATCACA 59.020 50.000 0.00 0.00 0.00 3.58
173 174 1.066143 ACTCCGTGGGTTCATCATCAC 60.066 52.381 0.00 0.00 0.00 3.06
174 175 1.207089 GACTCCGTGGGTTCATCATCA 59.793 52.381 0.00 0.00 0.00 3.07
175 176 1.207089 TGACTCCGTGGGTTCATCATC 59.793 52.381 0.00 0.00 0.00 2.92
176 177 1.275666 TGACTCCGTGGGTTCATCAT 58.724 50.000 0.00 0.00 0.00 2.45
177 178 1.052617 TTGACTCCGTGGGTTCATCA 58.947 50.000 0.00 0.00 0.00 3.07
178 179 2.280628 GATTGACTCCGTGGGTTCATC 58.719 52.381 0.00 0.00 0.00 2.92
179 180 1.065418 GGATTGACTCCGTGGGTTCAT 60.065 52.381 0.00 0.00 33.29 2.57
180 181 0.323629 GGATTGACTCCGTGGGTTCA 59.676 55.000 0.00 0.00 33.29 3.18
181 182 3.154589 GGATTGACTCCGTGGGTTC 57.845 57.895 0.00 0.00 33.29 3.62
189 190 6.619801 AATAATAAAGCACGGATTGACTCC 57.380 37.500 0.00 0.00 41.07 3.85
190 191 7.095187 CCCTAATAATAAAGCACGGATTGACTC 60.095 40.741 0.00 0.00 0.00 3.36
191 192 6.710744 CCCTAATAATAAAGCACGGATTGACT 59.289 38.462 0.00 0.00 0.00 3.41
192 193 6.708949 TCCCTAATAATAAAGCACGGATTGAC 59.291 38.462 0.00 0.00 0.00 3.18
193 194 6.833041 TCCCTAATAATAAAGCACGGATTGA 58.167 36.000 0.00 0.00 0.00 2.57
194 195 7.504924 TTCCCTAATAATAAAGCACGGATTG 57.495 36.000 0.00 0.00 0.00 2.67
195 196 7.996644 TCTTTCCCTAATAATAAAGCACGGATT 59.003 33.333 0.00 0.00 0.00 3.01
196 197 7.514721 TCTTTCCCTAATAATAAAGCACGGAT 58.485 34.615 0.00 0.00 0.00 4.18
197 198 6.891388 TCTTTCCCTAATAATAAAGCACGGA 58.109 36.000 0.00 0.00 0.00 4.69
198 199 7.745620 ATCTTTCCCTAATAATAAAGCACGG 57.254 36.000 0.00 0.00 0.00 4.94
201 202 9.807921 CCCTAATCTTTCCCTAATAATAAAGCA 57.192 33.333 0.00 0.00 0.00 3.91
208 209 9.699106 ACCTATTCCCTAATCTTTCCCTAATAA 57.301 33.333 0.00 0.00 0.00 1.40
210 211 9.699106 TTACCTATTCCCTAATCTTTCCCTAAT 57.301 33.333 0.00 0.00 0.00 1.73
211 212 9.523547 TTTACCTATTCCCTAATCTTTCCCTAA 57.476 33.333 0.00 0.00 0.00 2.69
212 213 9.523547 TTTTACCTATTCCCTAATCTTTCCCTA 57.476 33.333 0.00 0.00 0.00 3.53
213 214 8.415392 TTTTACCTATTCCCTAATCTTTCCCT 57.585 34.615 0.00 0.00 0.00 4.20
237 238 6.259638 TCGTGAATTTACGCTTTCAGTTTTT 58.740 32.000 17.14 0.00 43.40 1.94
238 239 5.812652 TCGTGAATTTACGCTTTCAGTTTT 58.187 33.333 17.14 0.00 43.40 2.43
239 240 5.235616 TCTCGTGAATTTACGCTTTCAGTTT 59.764 36.000 17.14 0.00 43.40 2.66
240 241 4.748102 TCTCGTGAATTTACGCTTTCAGTT 59.252 37.500 17.14 0.00 43.40 3.16
241 242 4.304110 TCTCGTGAATTTACGCTTTCAGT 58.696 39.130 17.14 0.00 43.40 3.41
242 243 4.903638 TCTCGTGAATTTACGCTTTCAG 57.096 40.909 17.14 9.49 43.40 3.02
243 244 4.986034 TCTTCTCGTGAATTTACGCTTTCA 59.014 37.500 17.14 0.00 43.40 2.69
244 245 5.511088 TCTTCTCGTGAATTTACGCTTTC 57.489 39.130 17.14 0.00 43.40 2.62
245 246 5.614887 GCTTCTTCTCGTGAATTTACGCTTT 60.615 40.000 17.14 0.00 43.40 3.51
246 247 4.143094 GCTTCTTCTCGTGAATTTACGCTT 60.143 41.667 17.14 0.00 43.40 4.68
247 248 3.368236 GCTTCTTCTCGTGAATTTACGCT 59.632 43.478 17.14 0.00 43.40 5.07
248 249 3.660777 GCTTCTTCTCGTGAATTTACGC 58.339 45.455 17.14 0.00 43.40 4.42
249 250 3.364023 ACGCTTCTTCTCGTGAATTTACG 59.636 43.478 15.96 15.96 44.98 3.18
250 251 4.905412 ACGCTTCTTCTCGTGAATTTAC 57.095 40.909 0.00 0.00 37.55 2.01
251 252 6.809689 TCAATACGCTTCTTCTCGTGAATTTA 59.190 34.615 0.00 0.00 39.46 1.40
252 253 5.637810 TCAATACGCTTCTTCTCGTGAATTT 59.362 36.000 0.00 0.00 39.46 1.82
253 254 5.168569 TCAATACGCTTCTTCTCGTGAATT 58.831 37.500 0.00 0.00 39.46 2.17
254 255 4.744570 TCAATACGCTTCTTCTCGTGAAT 58.255 39.130 0.00 0.00 39.46 2.57
255 256 4.166523 CTCAATACGCTTCTTCTCGTGAA 58.833 43.478 0.00 0.00 39.46 3.18
256 257 3.427638 CCTCAATACGCTTCTTCTCGTGA 60.428 47.826 0.00 0.00 39.46 4.35
257 258 2.854777 CCTCAATACGCTTCTTCTCGTG 59.145 50.000 0.00 0.00 39.46 4.35
258 259 2.492484 ACCTCAATACGCTTCTTCTCGT 59.508 45.455 0.00 0.00 42.09 4.18
259 260 3.152261 ACCTCAATACGCTTCTTCTCG 57.848 47.619 0.00 0.00 0.00 4.04
260 261 6.963049 TTTTACCTCAATACGCTTCTTCTC 57.037 37.500 0.00 0.00 0.00 2.87
296 297 4.934075 ACGCTTCTTCCCGTAAATTTAC 57.066 40.909 16.87 16.87 35.69 2.01
297 298 6.594937 ACAATACGCTTCTTCCCGTAAATTTA 59.405 34.615 0.00 0.00 42.35 1.40
298 299 5.413523 ACAATACGCTTCTTCCCGTAAATTT 59.586 36.000 0.00 0.00 42.35 1.82
299 300 4.939439 ACAATACGCTTCTTCCCGTAAATT 59.061 37.500 0.00 0.00 42.35 1.82
300 301 4.331717 CACAATACGCTTCTTCCCGTAAAT 59.668 41.667 0.00 0.00 42.35 1.40
301 302 3.680937 CACAATACGCTTCTTCCCGTAAA 59.319 43.478 0.00 0.00 42.35 2.01
302 303 3.056678 TCACAATACGCTTCTTCCCGTAA 60.057 43.478 0.00 0.00 42.35 3.18
303 304 2.492881 TCACAATACGCTTCTTCCCGTA 59.507 45.455 0.00 0.00 43.10 4.02
304 305 1.274167 TCACAATACGCTTCTTCCCGT 59.726 47.619 0.00 0.00 41.11 5.28
305 306 1.659098 GTCACAATACGCTTCTTCCCG 59.341 52.381 0.00 0.00 0.00 5.14
306 307 1.659098 CGTCACAATACGCTTCTTCCC 59.341 52.381 0.00 0.00 35.87 3.97
307 308 1.659098 CCGTCACAATACGCTTCTTCC 59.341 52.381 0.00 0.00 41.51 3.46
308 309 2.092211 CACCGTCACAATACGCTTCTTC 59.908 50.000 0.00 0.00 41.51 2.87
309 310 2.066262 CACCGTCACAATACGCTTCTT 58.934 47.619 0.00 0.00 41.51 2.52
310 311 1.271379 TCACCGTCACAATACGCTTCT 59.729 47.619 0.00 0.00 41.51 2.85
311 312 1.705256 TCACCGTCACAATACGCTTC 58.295 50.000 0.00 0.00 41.51 3.86
312 313 1.796459 GTTCACCGTCACAATACGCTT 59.204 47.619 0.00 0.00 41.51 4.68
313 314 1.000506 AGTTCACCGTCACAATACGCT 59.999 47.619 0.00 0.00 41.51 5.07
314 315 1.389106 GAGTTCACCGTCACAATACGC 59.611 52.381 0.00 0.00 41.51 4.42
315 316 2.668250 TGAGTTCACCGTCACAATACG 58.332 47.619 0.00 0.00 42.49 3.06
316 317 3.370978 CCATGAGTTCACCGTCACAATAC 59.629 47.826 0.00 0.00 0.00 1.89
317 318 3.259625 TCCATGAGTTCACCGTCACAATA 59.740 43.478 0.00 0.00 0.00 1.90
318 319 2.038426 TCCATGAGTTCACCGTCACAAT 59.962 45.455 0.00 0.00 0.00 2.71
319 320 1.414550 TCCATGAGTTCACCGTCACAA 59.585 47.619 0.00 0.00 0.00 3.33
320 321 1.000843 CTCCATGAGTTCACCGTCACA 59.999 52.381 0.00 0.00 0.00 3.58
321 322 1.000955 ACTCCATGAGTTCACCGTCAC 59.999 52.381 0.00 0.00 40.28 3.67
322 323 1.272490 GACTCCATGAGTTCACCGTCA 59.728 52.381 0.00 0.00 43.53 4.35
323 324 1.272490 TGACTCCATGAGTTCACCGTC 59.728 52.381 0.00 0.00 43.53 4.79
324 325 1.338107 TGACTCCATGAGTTCACCGT 58.662 50.000 0.00 0.00 43.53 4.83
325 326 2.455674 TTGACTCCATGAGTTCACCG 57.544 50.000 0.00 0.00 43.53 4.94
326 327 3.274288 GGATTGACTCCATGAGTTCACC 58.726 50.000 0.00 0.00 43.53 4.02
327 328 2.932614 CGGATTGACTCCATGAGTTCAC 59.067 50.000 0.00 0.00 43.53 3.18
328 329 2.567169 ACGGATTGACTCCATGAGTTCA 59.433 45.455 0.00 0.00 43.53 3.18
329 330 2.932614 CACGGATTGACTCCATGAGTTC 59.067 50.000 0.00 0.00 43.53 3.01
330 331 2.936993 GCACGGATTGACTCCATGAGTT 60.937 50.000 0.00 0.00 43.53 3.01
331 332 1.406069 GCACGGATTGACTCCATGAGT 60.406 52.381 0.00 0.00 46.42 3.41
332 333 1.134580 AGCACGGATTGACTCCATGAG 60.135 52.381 0.00 0.00 39.70 2.90
333 334 0.904649 AGCACGGATTGACTCCATGA 59.095 50.000 0.00 0.00 39.70 3.07
334 335 1.742761 AAGCACGGATTGACTCCATG 58.257 50.000 0.00 0.00 45.24 3.66
335 336 2.496899 AAAGCACGGATTGACTCCAT 57.503 45.000 0.00 0.00 45.24 3.41
336 337 3.627395 ATAAAGCACGGATTGACTCCA 57.373 42.857 0.00 0.00 45.24 3.86
337 338 6.619801 AATAATAAAGCACGGATTGACTCC 57.380 37.500 0.00 0.00 41.07 3.85
338 339 7.095187 CCCTAATAATAAAGCACGGATTGACTC 60.095 40.741 0.00 0.00 0.00 3.36
339 340 6.710744 CCCTAATAATAAAGCACGGATTGACT 59.289 38.462 0.00 0.00 0.00 3.41
340 341 6.708949 TCCCTAATAATAAAGCACGGATTGAC 59.291 38.462 0.00 0.00 0.00 3.18
341 342 6.833041 TCCCTAATAATAAAGCACGGATTGA 58.167 36.000 0.00 0.00 0.00 2.57
342 343 7.504924 TTCCCTAATAATAAAGCACGGATTG 57.495 36.000 0.00 0.00 0.00 2.67
343 344 7.996644 TCTTTCCCTAATAATAAAGCACGGATT 59.003 33.333 0.00 0.00 0.00 3.01
344 345 7.514721 TCTTTCCCTAATAATAAAGCACGGAT 58.485 34.615 0.00 0.00 0.00 4.18
345 346 6.891388 TCTTTCCCTAATAATAAAGCACGGA 58.109 36.000 0.00 0.00 0.00 4.69
346 347 7.745620 ATCTTTCCCTAATAATAAAGCACGG 57.254 36.000 0.00 0.00 0.00 4.94
349 350 9.807921 CCCTAATCTTTCCCTAATAATAAAGCA 57.192 33.333 0.00 0.00 0.00 3.91
359 360 9.510062 TGTACTTATTCCCTAATCTTTCCCTAA 57.490 33.333 0.00 0.00 0.00 2.69
360 361 9.510062 TTGTACTTATTCCCTAATCTTTCCCTA 57.490 33.333 0.00 0.00 0.00 3.53
361 362 8.401955 TTGTACTTATTCCCTAATCTTTCCCT 57.598 34.615 0.00 0.00 0.00 4.20
362 363 9.470399 TTTTGTACTTATTCCCTAATCTTTCCC 57.530 33.333 0.00 0.00 0.00 3.97
367 368 9.853177 CAGGATTTTGTACTTATTCCCTAATCT 57.147 33.333 0.00 0.00 0.00 2.40
368 369 9.847224 TCAGGATTTTGTACTTATTCCCTAATC 57.153 33.333 0.00 0.00 0.00 1.75
371 372 9.681062 CTTTCAGGATTTTGTACTTATTCCCTA 57.319 33.333 0.00 0.00 0.00 3.53
372 373 7.122799 GCTTTCAGGATTTTGTACTTATTCCCT 59.877 37.037 0.00 0.00 0.00 4.20
373 374 7.258441 GCTTTCAGGATTTTGTACTTATTCCC 58.742 38.462 0.00 0.00 0.00 3.97
374 375 6.967199 CGCTTTCAGGATTTTGTACTTATTCC 59.033 38.462 0.00 0.00 0.00 3.01
375 376 7.527457 ACGCTTTCAGGATTTTGTACTTATTC 58.473 34.615 0.00 0.00 0.00 1.75
376 377 7.448748 ACGCTTTCAGGATTTTGTACTTATT 57.551 32.000 0.00 0.00 0.00 1.40
377 378 8.556213 TTACGCTTTCAGGATTTTGTACTTAT 57.444 30.769 0.00 0.00 0.00 1.73
378 379 7.966246 TTACGCTTTCAGGATTTTGTACTTA 57.034 32.000 0.00 0.00 0.00 2.24
379 380 6.870971 TTACGCTTTCAGGATTTTGTACTT 57.129 33.333 0.00 0.00 0.00 2.24
380 381 6.870971 TTTACGCTTTCAGGATTTTGTACT 57.129 33.333 0.00 0.00 0.00 2.73
381 382 7.806014 TGAATTTACGCTTTCAGGATTTTGTAC 59.194 33.333 0.00 0.00 0.00 2.90
382 383 7.806014 GTGAATTTACGCTTTCAGGATTTTGTA 59.194 33.333 0.00 0.00 32.79 2.41
383 384 6.640907 GTGAATTTACGCTTTCAGGATTTTGT 59.359 34.615 0.00 0.00 32.79 2.83
384 385 6.183359 CGTGAATTTACGCTTTCAGGATTTTG 60.183 38.462 9.97 0.00 39.08 2.44
385 386 5.856455 CGTGAATTTACGCTTTCAGGATTTT 59.144 36.000 9.97 0.00 39.08 1.82
386 387 5.390613 CGTGAATTTACGCTTTCAGGATTT 58.609 37.500 9.97 0.00 39.08 2.17
387 388 4.142687 CCGTGAATTTACGCTTTCAGGATT 60.143 41.667 16.60 0.00 42.44 3.01
388 389 3.374058 CCGTGAATTTACGCTTTCAGGAT 59.626 43.478 16.60 0.00 42.44 3.24
389 390 2.739913 CCGTGAATTTACGCTTTCAGGA 59.260 45.455 16.60 0.00 42.44 3.86
390 391 2.739913 TCCGTGAATTTACGCTTTCAGG 59.260 45.455 16.60 2.38 42.44 3.86
391 392 4.398549 TTCCGTGAATTTACGCTTTCAG 57.601 40.909 16.60 3.06 42.44 3.02
392 393 4.512198 TCTTTCCGTGAATTTACGCTTTCA 59.488 37.500 16.60 0.00 42.44 2.69
393 394 5.025986 TCTTTCCGTGAATTTACGCTTTC 57.974 39.130 16.60 0.00 42.44 2.62
394 395 5.427036 TTCTTTCCGTGAATTTACGCTTT 57.573 34.783 16.60 0.00 42.44 3.51
395 396 4.612939 GCTTCTTTCCGTGAATTTACGCTT 60.613 41.667 16.60 0.00 42.44 4.68
396 397 3.120304 GCTTCTTTCCGTGAATTTACGCT 60.120 43.478 16.60 0.00 42.44 5.07
397 398 3.161306 GCTTCTTTCCGTGAATTTACGC 58.839 45.455 16.60 0.00 42.44 4.42
398 399 3.404564 CGCTTCTTTCCGTGAATTTACG 58.595 45.455 15.24 15.24 43.35 3.18
399 400 3.161306 GCGCTTCTTTCCGTGAATTTAC 58.839 45.455 0.00 0.00 0.00 2.01
400 401 2.809119 TGCGCTTCTTTCCGTGAATTTA 59.191 40.909 9.73 0.00 0.00 1.40
401 402 1.606668 TGCGCTTCTTTCCGTGAATTT 59.393 42.857 9.73 0.00 0.00 1.82
402 403 1.234821 TGCGCTTCTTTCCGTGAATT 58.765 45.000 9.73 0.00 0.00 2.17
403 404 1.453155 ATGCGCTTCTTTCCGTGAAT 58.547 45.000 9.73 0.00 0.00 2.57
404 405 1.069296 CAATGCGCTTCTTTCCGTGAA 60.069 47.619 9.73 0.00 0.00 3.18
405 406 0.516877 CAATGCGCTTCTTTCCGTGA 59.483 50.000 9.73 0.00 0.00 4.35
406 407 0.238289 ACAATGCGCTTCTTTCCGTG 59.762 50.000 9.73 0.00 0.00 4.94
407 408 0.238289 CACAATGCGCTTCTTTCCGT 59.762 50.000 9.73 0.00 0.00 4.69
408 409 0.516877 TCACAATGCGCTTCTTTCCG 59.483 50.000 9.73 0.00 0.00 4.30
409 410 1.725931 CGTCACAATGCGCTTCTTTCC 60.726 52.381 9.73 0.00 0.00 3.13
410 411 1.595609 CGTCACAATGCGCTTCTTTC 58.404 50.000 9.73 0.00 0.00 2.62
411 412 0.238289 CCGTCACAATGCGCTTCTTT 59.762 50.000 9.73 0.00 0.00 2.52
412 413 0.884704 ACCGTCACAATGCGCTTCTT 60.885 50.000 9.73 0.00 0.00 2.52
413 414 1.301716 ACCGTCACAATGCGCTTCT 60.302 52.632 9.73 0.00 0.00 2.85
414 415 1.154413 CACCGTCACAATGCGCTTC 60.154 57.895 9.73 0.00 0.00 3.86
415 416 0.955428 ATCACCGTCACAATGCGCTT 60.955 50.000 9.73 0.00 0.00 4.68
416 417 1.361668 GATCACCGTCACAATGCGCT 61.362 55.000 9.73 0.00 0.00 5.92
417 418 1.060937 GATCACCGTCACAATGCGC 59.939 57.895 0.00 0.00 0.00 6.09
418 419 1.705337 GGGATCACCGTCACAATGCG 61.705 60.000 0.00 0.00 36.97 4.73
419 420 0.676466 TGGGATCACCGTCACAATGC 60.676 55.000 0.00 0.00 44.64 3.56
420 421 1.086696 GTGGGATCACCGTCACAATG 58.913 55.000 0.00 0.00 44.64 2.82
421 422 0.391130 CGTGGGATCACCGTCACAAT 60.391 55.000 0.00 0.00 44.64 2.71
422 423 1.005512 CGTGGGATCACCGTCACAA 60.006 57.895 0.00 0.00 44.64 3.33
423 424 2.654289 CGTGGGATCACCGTCACA 59.346 61.111 0.00 0.00 44.64 3.58
424 425 2.125673 CCGTGGGATCACCGTCAC 60.126 66.667 0.00 0.00 44.64 3.67
425 426 1.261938 ATTCCGTGGGATCACCGTCA 61.262 55.000 0.00 0.00 44.64 4.35
426 427 0.529992 GATTCCGTGGGATCACCGTC 60.530 60.000 2.10 0.00 44.64 4.79
427 428 1.261938 TGATTCCGTGGGATCACCGT 61.262 55.000 5.73 0.00 44.64 4.83
428 429 0.107897 TTGATTCCGTGGGATCACCG 60.108 55.000 9.46 0.00 44.64 4.94
429 430 2.158755 AGATTGATTCCGTGGGATCACC 60.159 50.000 9.46 5.21 40.65 4.02
430 431 2.874701 CAGATTGATTCCGTGGGATCAC 59.125 50.000 9.46 0.00 40.36 3.06
431 432 2.505407 ACAGATTGATTCCGTGGGATCA 59.495 45.455 5.73 5.73 0.00 2.92
432 433 2.874701 CACAGATTGATTCCGTGGGATC 59.125 50.000 0.00 0.00 0.00 3.36
433 434 2.923121 CACAGATTGATTCCGTGGGAT 58.077 47.619 0.00 0.00 0.00 3.85
434 435 1.678728 GCACAGATTGATTCCGTGGGA 60.679 52.381 0.00 0.00 0.00 4.37
435 436 0.734889 GCACAGATTGATTCCGTGGG 59.265 55.000 0.00 0.00 0.00 4.61
436 437 1.742761 AGCACAGATTGATTCCGTGG 58.257 50.000 0.00 0.00 0.00 4.94
437 438 3.837213 AAAGCACAGATTGATTCCGTG 57.163 42.857 0.00 0.00 30.58 4.94
438 439 7.807977 ATAATAAAGCACAGATTGATTCCGT 57.192 32.000 0.00 0.00 30.58 4.69
439 440 9.817365 CTAATAATAAAGCACAGATTGATTCCG 57.183 33.333 0.00 0.00 30.58 4.30
479 480 6.342111 ACCAATGAAAACGGAAAGCTAAAAA 58.658 32.000 0.00 0.00 0.00 1.94
480 481 5.908341 ACCAATGAAAACGGAAAGCTAAAA 58.092 33.333 0.00 0.00 0.00 1.52
481 482 5.523438 ACCAATGAAAACGGAAAGCTAAA 57.477 34.783 0.00 0.00 0.00 1.85
482 483 5.523438 AACCAATGAAAACGGAAAGCTAA 57.477 34.783 0.00 0.00 0.00 3.09
483 484 5.523438 AAACCAATGAAAACGGAAAGCTA 57.477 34.783 0.00 0.00 0.00 3.32
491 492 7.764695 AACCTAAGAAAAACCAATGAAAACG 57.235 32.000 0.00 0.00 0.00 3.60
499 500 4.159879 TCGCCAAAACCTAAGAAAAACCAA 59.840 37.500 0.00 0.00 0.00 3.67
501 502 4.310357 TCGCCAAAACCTAAGAAAAACC 57.690 40.909 0.00 0.00 0.00 3.27
507 508 4.345859 TTCTCTTCGCCAAAACCTAAGA 57.654 40.909 0.00 0.00 0.00 2.10
544 552 1.215423 ACAGAAAACACTGCTTCCCCT 59.785 47.619 0.00 0.00 41.06 4.79
545 553 1.338020 CACAGAAAACACTGCTTCCCC 59.662 52.381 0.00 0.00 41.06 4.81
548 556 5.734855 TTACTCACAGAAAACACTGCTTC 57.265 39.130 0.00 0.00 41.06 3.86
557 565 5.654650 TGCTTTTCCCTTTACTCACAGAAAA 59.345 36.000 0.00 0.00 33.53 2.29
560 568 4.389374 CTGCTTTTCCCTTTACTCACAGA 58.611 43.478 0.00 0.00 0.00 3.41
561 569 3.503748 CCTGCTTTTCCCTTTACTCACAG 59.496 47.826 0.00 0.00 0.00 3.66
582 601 4.779733 TCGGTCTGGGGAGGAGCC 62.780 72.222 0.00 0.00 0.00 4.70
663 682 0.949105 AGAAACATGTGGCGTCGGAC 60.949 55.000 0.00 0.00 0.00 4.79
692 711 0.788391 CGCTTAGTGGGTCAACGAAC 59.212 55.000 0.00 0.00 0.00 3.95
717 736 2.620585 GGAAATGAGCTAGGTCAATGGC 59.379 50.000 27.06 16.22 0.00 4.40
737 756 2.122783 TAATTGTTCTGGCCTTCGGG 57.877 50.000 3.32 0.00 38.37 5.14
742 761 3.365472 GGGACAATAATTGTTCTGGCCT 58.635 45.455 3.32 0.00 45.52 5.19
762 781 1.075374 TGGGGTTTGACTTGATCTGGG 59.925 52.381 0.00 0.00 0.00 4.45
798 831 2.399356 GCGGCTACTGGCAAGGTTC 61.399 63.158 0.00 0.00 44.01 3.62
800 833 4.410400 GGCGGCTACTGGCAAGGT 62.410 66.667 0.00 0.00 44.01 3.50
803 836 4.715523 GGTGGCGGCTACTGGCAA 62.716 66.667 16.20 0.00 44.01 4.52
818 851 4.309950 GAACACAGCGACCGGGGT 62.310 66.667 6.32 0.00 0.00 4.95
822 855 1.004277 GACAGAGAACACAGCGACCG 61.004 60.000 0.00 0.00 0.00 4.79
829 862 2.137528 TGGCCGGACAGAGAACACA 61.138 57.895 5.41 0.00 0.00 3.72
847 880 3.113745 CGGTGGTATCGGCGTAGT 58.886 61.111 6.85 0.00 0.00 2.73
890 923 2.513666 ATATGCGGTGCGGTGGTG 60.514 61.111 0.00 0.00 0.00 4.17
899 932 0.324943 GTAGGGGATGCATATGCGGT 59.675 55.000 22.21 13.68 45.83 5.68
900 933 0.324614 TGTAGGGGATGCATATGCGG 59.675 55.000 22.21 0.00 45.83 5.69
934 967 1.376942 GGCAGCATCTGAGCAGTGT 60.377 57.895 0.00 0.00 36.85 3.55
964 997 4.926244 TCTAGAAGCTTAGAGCATTGACG 58.074 43.478 0.00 0.00 45.56 4.35
998 1031 4.543084 GAAGCAAGCGCGCCATCC 62.543 66.667 30.33 14.09 45.49 3.51
1012 1045 1.219393 GCAGGACGGGAGGAAGAAG 59.781 63.158 0.00 0.00 0.00 2.85
1241 1274 4.052229 CCGCCGTGACGAAGGAGT 62.052 66.667 6.54 0.00 34.06 3.85
1455 1488 1.531602 GCAGGGCCACTCCTTGTTT 60.532 57.895 6.18 0.00 43.37 2.83
1479 1512 2.112815 GCCGTGGTATGACTTGCCC 61.113 63.158 0.00 0.00 0.00 5.36
1548 1585 1.516386 CGAACATCGACACCGGGAG 60.516 63.158 6.32 0.00 43.74 4.30
1606 1646 7.653767 AGTTGTAGTTCCTGAAAAATAGACG 57.346 36.000 0.00 0.00 0.00 4.18
1828 1872 2.358737 GTTGGTGGTGAGCCCGAG 60.359 66.667 0.00 0.00 35.15 4.63
1880 1924 2.681273 ATCCTCCACCCTCGGATCCC 62.681 65.000 6.06 0.00 32.17 3.85
1881 1925 0.114560 TATCCTCCACCCTCGGATCC 59.885 60.000 0.00 0.00 38.45 3.36
2006 2057 1.812922 GCAGTGCCCAGACTGATCG 60.813 63.158 2.85 0.00 45.39 3.69
2042 2093 3.750652 TCGAAACTTGCATGCATGTCTAA 59.249 39.130 32.01 18.53 33.97 2.10
2060 2111 6.335471 TCAACACTGGTAAAGTAGATCGAA 57.665 37.500 0.00 0.00 36.83 3.71
2064 2115 7.736893 AGAAGTTCAACACTGGTAAAGTAGAT 58.263 34.615 5.50 0.00 36.83 1.98
2069 2120 8.154649 ACATAAGAAGTTCAACACTGGTAAAG 57.845 34.615 5.50 0.00 35.12 1.85
2077 2128 7.061094 GCATAAGCAACATAAGAAGTTCAACAC 59.939 37.037 5.50 0.00 41.58 3.32
2137 2188 8.043710 GGATACATAGCATTCCTACAATTAGCT 58.956 37.037 0.00 0.00 34.84 3.32
2138 2189 7.010552 CGGATACATAGCATTCCTACAATTAGC 59.989 40.741 0.00 0.00 0.00 3.09
2163 2214 3.304190 CCCACGAGTAAAAAGGTTTTCCG 60.304 47.826 0.00 0.00 46.35 4.30
2182 2233 3.450817 TGAGCTCAGAAACGAATATCCCA 59.549 43.478 13.74 0.00 0.00 4.37
2243 2294 1.656818 ATTGCGGGCACAAATCCTCG 61.657 55.000 0.00 0.00 32.27 4.63
2350 2403 2.337879 GAACCCACCTGCTCCACACA 62.338 60.000 0.00 0.00 0.00 3.72
2354 2407 1.379916 CATGAACCCACCTGCTCCA 59.620 57.895 0.00 0.00 0.00 3.86
2358 2411 2.036256 AGCCATGAACCCACCTGC 59.964 61.111 0.00 0.00 0.00 4.85
2419 2490 0.322008 CAGGTGACCTTCAAGGAGGC 60.322 60.000 11.59 0.00 40.65 4.70
2493 2564 4.517832 ACGGGTTTTTCTGGATAGTGTTTC 59.482 41.667 0.00 0.00 0.00 2.78
2502 2573 2.421220 GGCAACGGGTTTTTCTGGA 58.579 52.632 0.00 0.00 0.00 3.86
2515 2586 2.200170 GAACCATGGAGCACGGCAAC 62.200 60.000 21.47 0.00 0.00 4.17
2516 2587 1.971167 GAACCATGGAGCACGGCAA 60.971 57.895 21.47 0.00 0.00 4.52
2518 2589 3.499737 CGAACCATGGAGCACGGC 61.500 66.667 21.47 0.00 0.00 5.68
2519 2590 2.047274 ACGAACCATGGAGCACGG 60.047 61.111 21.47 3.65 0.00 4.94
2521 2592 1.079503 GAAGACGAACCATGGAGCAC 58.920 55.000 21.47 5.70 0.00 4.40
2552 2625 3.545633 GTGAGACATGAGAAAAACGCAC 58.454 45.455 0.00 0.00 0.00 5.34
2577 2650 1.208259 GCGCAAACTGTTTCTTTGGG 58.792 50.000 0.30 2.93 41.89 4.12
2696 2769 3.678056 TCCTTTTCATACGCACTCAGT 57.322 42.857 0.00 0.00 0.00 3.41
2735 2809 1.289800 GGCAAGAGAACGAACGGGAC 61.290 60.000 0.00 0.00 0.00 4.46
2761 2858 4.513692 CAGACGAACTAAAACAATGGGTCA 59.486 41.667 0.00 0.00 0.00 4.02
2797 2894 3.056465 CCTTTCTACGGAAGAGCTTGACT 60.056 47.826 0.00 0.00 35.05 3.41
2810 2907 1.141019 TGCCGCTAGCCTTTCTACG 59.859 57.895 9.66 0.00 42.71 3.51
2914 3011 1.542547 CGGGGAAATATGCTAACGGCT 60.543 52.381 0.00 0.00 42.39 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.