Multiple sequence alignment - TraesCS1B01G098600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G098600 chr1B 100.000 5675 0 0 1 5675 105112564 105106890 0.000000e+00 10480.0
1 TraesCS1B01G098600 chr1B 85.810 2100 208 42 2778 4825 105259466 105257405 0.000000e+00 2145.0
2 TraesCS1B01G098600 chr1B 84.878 615 47 23 728 1316 105262012 105261418 3.810000e-161 579.0
3 TraesCS1B01G098600 chr1B 87.239 431 42 9 2275 2698 105259934 105259510 3.980000e-131 479.0
4 TraesCS1B01G098600 chr1B 90.411 73 6 1 1052 1124 105310390 105310319 1.680000e-15 95.3
5 TraesCS1B01G098600 chr1B 96.970 33 1 0 648 680 654913121 654913089 7.940000e-04 56.5
6 TraesCS1B01G098600 chr1D 91.833 4898 265 63 469 5305 64142925 64138102 0.000000e+00 6704.0
7 TraesCS1B01G098600 chr1D 90.862 3261 197 40 1634 4835 64420418 64417200 0.000000e+00 4277.0
8 TraesCS1B01G098600 chr1D 86.902 1924 189 32 2930 4825 64883095 64881207 0.000000e+00 2098.0
9 TraesCS1B01G098600 chr1D 88.590 929 59 22 722 1635 64421590 64420694 0.000000e+00 1085.0
10 TraesCS1B01G098600 chr1D 86.801 447 45 10 2275 2716 64883749 64883312 2.380000e-133 486.0
11 TraesCS1B01G098600 chr1D 82.601 592 54 30 767 1324 64885790 64885214 1.430000e-130 477.0
12 TraesCS1B01G098600 chr1D 81.460 507 62 19 45 530 52738462 52738957 2.480000e-103 387.0
13 TraesCS1B01G098600 chr1A 91.599 4904 265 73 707 5533 63332082 63327249 0.000000e+00 6637.0
14 TraesCS1B01G098600 chr1A 89.132 3248 241 56 1634 4835 63479063 63475882 0.000000e+00 3940.0
15 TraesCS1B01G098600 chr1A 86.899 1893 186 36 2933 4795 63743464 63741604 0.000000e+00 2065.0
16 TraesCS1B01G098600 chr1A 89.892 930 54 16 707 1625 63481257 63480357 0.000000e+00 1160.0
17 TraesCS1B01G098600 chr1A 83.407 681 77 18 2254 2911 63744186 63743519 2.930000e-167 599.0
18 TraesCS1B01G098600 chr1A 93.851 309 17 2 1019 1326 63747839 63747532 1.110000e-126 464.0
19 TraesCS1B01G098600 chr1A 80.556 504 65 22 2758 3238 426230340 426230833 1.940000e-94 357.0
20 TraesCS1B01G098600 chr1A 91.241 137 12 0 5539 5675 63314382 63314246 2.700000e-43 187.0
21 TraesCS1B01G098600 chr1A 86.813 91 10 2 1052 1141 63835724 63835635 3.620000e-17 100.0
22 TraesCS1B01G098600 chr3D 83.738 412 50 10 133 533 361736258 361735853 1.930000e-99 374.0
23 TraesCS1B01G098600 chr3D 85.906 149 19 2 5057 5203 288550455 288550603 2.120000e-34 158.0
24 TraesCS1B01G098600 chr3D 80.576 139 25 2 561 698 15386328 15386465 7.780000e-19 106.0
25 TraesCS1B01G098600 chr3D 83.838 99 10 5 563 661 363254829 363254737 7.830000e-14 89.8
26 TraesCS1B01G098600 chr3D 82.955 88 13 2 575 661 446745595 446745509 1.700000e-10 78.7
27 TraesCS1B01G098600 chr4B 85.886 333 34 8 2933 3253 69297644 69297313 5.440000e-90 342.0
28 TraesCS1B01G098600 chr4B 86.420 81 10 1 581 661 546086262 546086183 2.820000e-13 87.9
29 TraesCS1B01G098600 chr3B 79.191 519 82 16 36 534 24698423 24697911 2.530000e-88 337.0
30 TraesCS1B01G098600 chr4A 79.592 490 79 11 60 533 30196203 30195719 1.180000e-86 331.0
31 TraesCS1B01G098600 chr5B 81.429 420 50 18 134 533 48723871 48723460 9.180000e-83 318.0
32 TraesCS1B01G098600 chr5B 82.447 188 25 6 45 226 108643829 108644014 2.120000e-34 158.0
33 TraesCS1B01G098600 chr5B 80.986 142 24 3 562 702 568737337 568737476 6.010000e-20 110.0
34 TraesCS1B01G098600 chr5B 81.720 93 14 3 574 664 466703334 466703243 2.190000e-09 75.0
35 TraesCS1B01G098600 chr2D 79.955 449 76 8 89 533 476344243 476343805 9.180000e-83 318.0
36 TraesCS1B01G098600 chr2D 83.673 147 22 2 5061 5205 88290056 88290202 2.760000e-28 137.0
37 TraesCS1B01G098600 chr2D 80.108 186 29 5 43 222 71440490 71440673 1.280000e-26 132.0
38 TraesCS1B01G098600 chr2D 86.301 73 10 0 589 661 603038521 603038449 4.710000e-11 80.5
39 TraesCS1B01G098600 chr5D 78.585 509 71 21 43 533 458110616 458110128 9.240000e-78 302.0
40 TraesCS1B01G098600 chr5D 84.416 154 20 4 5061 5211 175769119 175768967 1.270000e-31 148.0
41 TraesCS1B01G098600 chr7B 84.512 297 39 5 237 533 137022862 137022573 2.590000e-73 287.0
42 TraesCS1B01G098600 chr7B 76.613 496 94 14 55 530 499639903 499640396 2.620000e-63 254.0
43 TraesCS1B01G098600 chr7B 86.395 147 17 3 5061 5205 245994119 245994264 2.120000e-34 158.0
44 TraesCS1B01G098600 chr2A 77.823 496 88 16 46 534 618265634 618265154 2.590000e-73 287.0
45 TraesCS1B01G098600 chr2A 82.955 88 13 2 575 661 706523342 706523428 1.700000e-10 78.7
46 TraesCS1B01G098600 chr6A 85.616 146 20 1 5061 5205 27188898 27189043 9.850000e-33 152.0
47 TraesCS1B01G098600 chrUn 85.915 142 19 1 5061 5201 96471031 96471172 3.540000e-32 150.0
48 TraesCS1B01G098600 chr3A 83.974 156 22 3 5061 5214 383690934 383691088 4.580000e-31 147.0
49 TraesCS1B01G098600 chr3A 80.328 183 30 3 45 222 149560915 149560734 3.570000e-27 134.0
50 TraesCS1B01G098600 chr5A 83.562 146 23 1 5061 5205 475272465 475272610 9.920000e-28 135.0
51 TraesCS1B01G098600 chr6B 80.000 160 29 2 65 222 679986639 679986797 1.290000e-21 115.0
52 TraesCS1B01G098600 chr6B 91.045 67 6 0 5240 5306 636476773 636476839 2.180000e-14 91.6
53 TraesCS1B01G098600 chr7D 73.560 382 58 26 45 409 168781399 168781044 7.780000e-19 106.0
54 TraesCS1B01G098600 chr7D 81.053 95 18 0 128 222 42411176 42411082 6.100000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G098600 chr1B 105106890 105112564 5674 True 10480.000000 10480 100.000000 1 5675 1 chr1B.!!$R1 5674
1 TraesCS1B01G098600 chr1B 105257405 105262012 4607 True 1067.666667 2145 85.975667 728 4825 3 chr1B.!!$R4 4097
2 TraesCS1B01G098600 chr1D 64138102 64142925 4823 True 6704.000000 6704 91.833000 469 5305 1 chr1D.!!$R1 4836
3 TraesCS1B01G098600 chr1D 64417200 64421590 4390 True 2681.000000 4277 89.726000 722 4835 2 chr1D.!!$R2 4113
4 TraesCS1B01G098600 chr1D 64881207 64885790 4583 True 1020.333333 2098 85.434667 767 4825 3 chr1D.!!$R3 4058
5 TraesCS1B01G098600 chr1A 63327249 63332082 4833 True 6637.000000 6637 91.599000 707 5533 1 chr1A.!!$R2 4826
6 TraesCS1B01G098600 chr1A 63475882 63481257 5375 True 2550.000000 3940 89.512000 707 4835 2 chr1A.!!$R4 4128
7 TraesCS1B01G098600 chr1A 63741604 63747839 6235 True 1042.666667 2065 88.052333 1019 4795 3 chr1A.!!$R5 3776
8 TraesCS1B01G098600 chr3B 24697911 24698423 512 True 337.000000 337 79.191000 36 534 1 chr3B.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.106419 ATGGTCAAAACCCACACCGT 60.106 50.0 0.00 0.0 45.83 4.83 F
80 81 0.179129 CCAACCCATTTCATCTGCGC 60.179 55.0 0.00 0.0 0.00 6.09 F
83 84 0.322816 ACCCATTTCATCTGCGCACT 60.323 50.0 5.66 0.0 0.00 4.40 F
120 121 0.467290 GGACAGAACAGTTGGCCCAA 60.467 55.0 0.00 0.0 37.80 4.12 F
131 136 0.489567 TTGGCCCAACCTACCCAAAT 59.510 50.0 0.00 0.0 40.22 2.32 F
2114 4849 0.326264 GTGGAGTTGGAGGCACAGAT 59.674 55.0 0.00 0.0 0.00 2.90 F
2314 5105 0.032403 TTCGTCGACATGGTCCGTTT 59.968 50.0 17.16 0.0 0.00 3.60 F
3209 6082 0.673644 AGCTTCCGTTTGATGACCGG 60.674 55.0 0.00 0.0 43.03 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1657 4097 0.441145 GTCCATGTGTAACGCGGAAC 59.559 55.000 12.47 8.77 40.85 3.62 R
1922 4544 2.570415 TGCAATCCCCACGTTCTTTA 57.430 45.000 0.00 0.00 0.00 1.85 R
2069 4722 3.236047 TGCTACAGGTCTTGTGGTCTAA 58.764 45.455 0.00 0.00 41.10 2.10 R
2115 4850 7.886629 AGCATTAATCTTAAAATGGAGCTGA 57.113 32.000 0.00 0.00 34.37 4.26 R
2116 4851 8.192774 TCAAGCATTAATCTTAAAATGGAGCTG 58.807 33.333 0.00 0.00 34.37 4.24 R
3686 6568 1.541310 TACTCTTGTCCCCAGGTGCG 61.541 60.000 0.00 0.00 0.00 5.34 R
4207 7107 0.240945 GGTTGTTCGGTCCATTGCAG 59.759 55.000 0.00 0.00 0.00 4.41 R
4986 7916 0.036105 TCGCTAGTACCTCACGGTCA 60.036 55.000 0.00 0.00 44.21 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.199804 ACGGGAGTGCTCTCTTGT 57.800 55.556 14.98 10.77 44.82 3.16
21 22 1.668294 ACGGGAGTGCTCTCTTGTG 59.332 57.895 14.98 5.84 44.82 3.33
22 23 0.827925 ACGGGAGTGCTCTCTTGTGA 60.828 55.000 14.98 0.00 44.82 3.58
23 24 0.534412 CGGGAGTGCTCTCTTGTGAT 59.466 55.000 14.98 0.00 40.29 3.06
24 25 1.738365 CGGGAGTGCTCTCTTGTGATG 60.738 57.143 14.98 0.00 40.29 3.07
25 26 1.406614 GGGAGTGCTCTCTTGTGATGG 60.407 57.143 14.98 0.00 40.29 3.51
26 27 1.277557 GGAGTGCTCTCTTGTGATGGT 59.722 52.381 14.98 0.00 40.29 3.55
27 28 2.615869 GAGTGCTCTCTTGTGATGGTC 58.384 52.381 8.54 0.00 37.68 4.02
28 29 1.973515 AGTGCTCTCTTGTGATGGTCA 59.026 47.619 0.00 0.00 0.00 4.02
29 30 2.369860 AGTGCTCTCTTGTGATGGTCAA 59.630 45.455 0.00 0.00 0.00 3.18
30 31 3.141398 GTGCTCTCTTGTGATGGTCAAA 58.859 45.455 0.00 0.00 0.00 2.69
31 32 3.565482 GTGCTCTCTTGTGATGGTCAAAA 59.435 43.478 0.00 0.00 0.00 2.44
32 33 3.565482 TGCTCTCTTGTGATGGTCAAAAC 59.435 43.478 0.00 0.00 0.00 2.43
33 34 3.057946 GCTCTCTTGTGATGGTCAAAACC 60.058 47.826 0.00 0.00 46.66 3.27
34 35 3.486383 TCTCTTGTGATGGTCAAAACCC 58.514 45.455 0.00 0.00 45.83 4.11
35 36 3.117701 TCTCTTGTGATGGTCAAAACCCA 60.118 43.478 0.00 0.00 45.83 4.51
36 37 2.955660 TCTTGTGATGGTCAAAACCCAC 59.044 45.455 0.00 0.00 45.83 4.61
37 38 2.443958 TGTGATGGTCAAAACCCACA 57.556 45.000 0.00 0.00 45.83 4.17
38 39 2.028130 TGTGATGGTCAAAACCCACAC 58.972 47.619 11.58 11.58 45.83 3.82
39 40 1.339929 GTGATGGTCAAAACCCACACC 59.660 52.381 8.87 0.00 45.83 4.16
40 41 0.596082 GATGGTCAAAACCCACACCG 59.404 55.000 0.00 0.00 45.83 4.94
41 42 0.106419 ATGGTCAAAACCCACACCGT 60.106 50.000 0.00 0.00 45.83 4.83
45 46 2.033675 GGTCAAAACCCACACCGTTTAG 59.966 50.000 0.00 0.00 39.93 1.85
48 49 1.601166 AAACCCACACCGTTTAGAGC 58.399 50.000 0.00 0.00 31.75 4.09
53 54 2.218603 CCACACCGTTTAGAGCAACTT 58.781 47.619 0.00 0.00 0.00 2.66
54 55 2.223377 CCACACCGTTTAGAGCAACTTC 59.777 50.000 0.00 0.00 0.00 3.01
58 59 2.542595 ACCGTTTAGAGCAACTTCAACG 59.457 45.455 14.81 14.81 40.54 4.10
63 64 2.892334 GAGCAACTTCAACGCGCCA 61.892 57.895 5.73 0.00 0.00 5.69
76 77 1.656818 CGCGCCAACCCATTTCATCT 61.657 55.000 0.00 0.00 0.00 2.90
80 81 0.179129 CCAACCCATTTCATCTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
81 82 0.527113 CAACCCATTTCATCTGCGCA 59.473 50.000 10.98 10.98 0.00 6.09
83 84 0.322816 ACCCATTTCATCTGCGCACT 60.323 50.000 5.66 0.00 0.00 4.40
93 94 3.254014 CTGCGCACTTCCGTTTGGG 62.254 63.158 5.66 0.00 35.24 4.12
95 96 2.943653 CGCACTTCCGTTTGGGTC 59.056 61.111 0.00 0.00 37.00 4.46
111 112 4.717629 TCGGCGCGGACAGAACAG 62.718 66.667 14.27 0.00 0.00 3.16
113 114 2.665185 GGCGCGGACAGAACAGTT 60.665 61.111 8.83 0.00 0.00 3.16
120 121 0.467290 GGACAGAACAGTTGGCCCAA 60.467 55.000 0.00 0.00 37.80 4.12
122 123 0.755327 ACAGAACAGTTGGCCCAACC 60.755 55.000 22.77 7.71 44.49 3.77
124 125 1.145571 AGAACAGTTGGCCCAACCTA 58.854 50.000 22.77 0.00 44.49 3.08
131 136 0.489567 TTGGCCCAACCTACCCAAAT 59.510 50.000 0.00 0.00 40.22 2.32
135 140 1.847328 CCCAACCTACCCAAATGGAC 58.153 55.000 0.00 0.00 37.39 4.02
140 145 1.366111 CCTACCCAAATGGACGTGCG 61.366 60.000 1.60 0.00 37.39 5.34
150 155 2.170273 GACGTGCGTCCGCTTTTC 59.830 61.111 13.31 2.64 42.51 2.29
160 165 3.041940 CGCTTTTCGTCCGCCTGT 61.042 61.111 0.00 0.00 0.00 4.00
164 169 0.941542 CTTTTCGTCCGCCTGTTGAA 59.058 50.000 0.00 0.00 0.00 2.69
170 175 0.958822 GTCCGCCTGTTGAACCATTT 59.041 50.000 0.00 0.00 0.00 2.32
171 176 1.339929 GTCCGCCTGTTGAACCATTTT 59.660 47.619 0.00 0.00 0.00 1.82
173 178 1.665735 CCGCCTGTTGAACCATTTTCG 60.666 52.381 0.00 0.00 0.00 3.46
174 179 1.265635 CGCCTGTTGAACCATTTTCGA 59.734 47.619 0.00 0.00 0.00 3.71
187 192 3.679502 CCATTTTCGACCCAATTTTGAGC 59.320 43.478 0.00 0.00 0.00 4.26
190 195 1.533625 TCGACCCAATTTTGAGCCTG 58.466 50.000 0.00 0.00 0.00 4.85
191 196 0.527565 CGACCCAATTTTGAGCCTGG 59.472 55.000 0.00 0.00 0.00 4.45
193 198 2.802719 GACCCAATTTTGAGCCTGGTA 58.197 47.619 0.00 0.00 0.00 3.25
203 208 2.954868 GCCTGGTATGCGTCGACG 60.955 66.667 32.57 32.57 43.27 5.12
214 219 2.726912 GTCGACGCGGACACGAAA 60.727 61.111 12.47 0.00 44.60 3.46
222 227 2.659244 GGACACGAAACGGACGCA 60.659 61.111 0.00 0.00 0.00 5.24
224 229 2.202770 ACACGAAACGGACGCACA 60.203 55.556 0.00 0.00 0.00 4.57
226 231 2.963320 ACGAAACGGACGCACACC 60.963 61.111 0.00 0.00 0.00 4.16
227 232 2.660552 CGAAACGGACGCACACCT 60.661 61.111 0.00 0.00 0.00 4.00
228 233 1.372004 CGAAACGGACGCACACCTA 60.372 57.895 0.00 0.00 0.00 3.08
229 234 1.611592 CGAAACGGACGCACACCTAC 61.612 60.000 0.00 0.00 0.00 3.18
234 252 3.315949 GACGCACACCTACCCCCA 61.316 66.667 0.00 0.00 0.00 4.96
235 253 3.600898 GACGCACACCTACCCCCAC 62.601 68.421 0.00 0.00 0.00 4.61
260 278 2.334946 CCAGTCGGTGGCACATTGG 61.335 63.158 20.82 15.80 44.52 3.16
261 279 2.672996 AGTCGGTGGCACATTGGC 60.673 61.111 20.82 10.05 44.52 4.52
271 289 0.813821 GCACATTGGCCCTTCTCTTC 59.186 55.000 0.00 0.00 0.00 2.87
277 295 2.677848 GCCCTTCTCTTCCACCCC 59.322 66.667 0.00 0.00 0.00 4.95
278 296 2.985116 GCCCTTCTCTTCCACCCCC 61.985 68.421 0.00 0.00 0.00 5.40
286 304 0.838554 TCTTCCACCCCCATCGACAA 60.839 55.000 0.00 0.00 0.00 3.18
290 308 0.960364 CCACCCCCATCGACAACAAG 60.960 60.000 0.00 0.00 0.00 3.16
295 313 0.609131 CCCATCGACAACAAGCCCTT 60.609 55.000 0.00 0.00 0.00 3.95
302 320 4.603535 AACAAGCCCTTGCCCGCT 62.604 61.111 7.88 0.00 44.03 5.52
330 348 4.794439 GTTGCCGCCGCCCATTTC 62.794 66.667 0.00 0.00 0.00 2.17
354 373 2.516460 CTCTGCCAGCAGCCCATC 60.516 66.667 14.86 0.00 43.31 3.51
366 385 3.077907 CCCATCCCGACACACCTT 58.922 61.111 0.00 0.00 0.00 3.50
368 387 1.553690 CCCATCCCGACACACCTTCT 61.554 60.000 0.00 0.00 0.00 2.85
373 392 1.913762 CCGACACACCTTCTCCCCT 60.914 63.158 0.00 0.00 0.00 4.79
376 395 0.531200 GACACACCTTCTCCCCTACG 59.469 60.000 0.00 0.00 0.00 3.51
437 456 3.365265 CCACCGCAGCTTTCCACC 61.365 66.667 0.00 0.00 0.00 4.61
438 457 3.365265 CACCGCAGCTTTCCACCC 61.365 66.667 0.00 0.00 0.00 4.61
439 458 4.660938 ACCGCAGCTTTCCACCCC 62.661 66.667 0.00 0.00 0.00 4.95
440 459 4.351054 CCGCAGCTTTCCACCCCT 62.351 66.667 0.00 0.00 0.00 4.79
441 460 2.282462 CGCAGCTTTCCACCCCTT 60.282 61.111 0.00 0.00 0.00 3.95
444 463 1.304464 CAGCTTTCCACCCCTTCCC 60.304 63.158 0.00 0.00 0.00 3.97
451 470 2.531685 CACCCCTTCCCCACTCCA 60.532 66.667 0.00 0.00 0.00 3.86
457 476 1.374252 CTTCCCCACTCCAACGTCG 60.374 63.158 0.00 0.00 0.00 5.12
458 477 3.524648 TTCCCCACTCCAACGTCGC 62.525 63.158 0.00 0.00 0.00 5.19
459 478 4.003788 CCCCACTCCAACGTCGCT 62.004 66.667 0.00 0.00 0.00 4.93
555 592 2.039070 GCCCTGATCCAGAGGAGACAT 61.039 57.143 0.00 0.00 34.05 3.06
566 603 2.690778 GGAGACATGCGTTGGCCAC 61.691 63.158 3.88 0.00 38.85 5.01
588 625 1.066918 GACGAATATGGGTCGGCGT 59.933 57.895 6.85 0.00 42.82 5.68
594 631 1.618876 ATATGGGTCGGCGTGTTGGA 61.619 55.000 6.85 0.00 0.00 3.53
626 663 4.000988 GACCCAAATCTTAAACAGAGCGA 58.999 43.478 0.00 0.00 33.87 4.93
636 673 3.175240 CAGAGCGAACACCGAGCG 61.175 66.667 0.00 0.00 41.76 5.03
637 674 3.362797 AGAGCGAACACCGAGCGA 61.363 61.111 0.00 0.00 41.76 4.93
663 700 3.241701 CCAATCCAAACGGACAAAATCG 58.758 45.455 0.00 0.00 34.62 3.34
674 711 1.460359 GACAAAATCGCCGTCCGTTTA 59.540 47.619 0.00 0.00 38.35 2.01
704 741 5.119743 ACGCGTTGGAGTTACTCTTATTTTC 59.880 40.000 5.58 0.00 0.00 2.29
705 742 5.445540 CGCGTTGGAGTTACTCTTATTTTCC 60.446 44.000 12.41 0.00 0.00 3.13
706 743 5.642491 GCGTTGGAGTTACTCTTATTTTCCT 59.358 40.000 12.41 0.00 0.00 3.36
710 747 9.894783 GTTGGAGTTACTCTTATTTTCCTTTTC 57.105 33.333 12.41 0.00 0.00 2.29
767 807 7.319646 GCCACACCTTCATAATGAAAATGTTA 58.680 34.615 0.00 0.00 35.73 2.41
769 809 9.520204 CCACACCTTCATAATGAAAATGTTATC 57.480 33.333 0.00 0.00 35.73 1.75
849 894 3.199190 ACACAACCACACGCACGG 61.199 61.111 0.00 0.00 0.00 4.94
868 913 2.139118 GGACACAGCAAGTTCTGAGAC 58.861 52.381 8.67 3.02 37.51 3.36
875 940 3.931468 CAGCAAGTTCTGAGACGATTCAT 59.069 43.478 0.00 0.00 36.19 2.57
888 953 9.509855 CTGAGACGATTCATAGCTATAAATACC 57.490 37.037 5.77 0.00 0.00 2.73
890 955 7.481642 AGACGATTCATAGCTATAAATACCCG 58.518 38.462 5.77 6.76 0.00 5.28
892 957 6.127423 ACGATTCATAGCTATAAATACCCGCT 60.127 38.462 5.77 0.00 34.88 5.52
899 965 3.616802 GCTATAAATACCCGCTCTCCACC 60.617 52.174 0.00 0.00 0.00 4.61
901 967 0.831307 AAATACCCGCTCTCCACCTC 59.169 55.000 0.00 0.00 0.00 3.85
955 1032 1.202177 CCGGCTCAATTCAATTCACCG 60.202 52.381 7.67 7.67 39.11 4.94
1363 1583 6.693545 GCTAGATGCGTGTATAGAATCCATAC 59.306 42.308 0.00 0.00 0.00 2.39
1364 1584 6.590234 AGATGCGTGTATAGAATCCATACA 57.410 37.500 0.00 0.00 36.71 2.29
1553 2083 7.284919 AGATTGCAAGCATCATCATCATAAA 57.715 32.000 18.24 0.00 0.00 1.40
1554 2084 7.896811 AGATTGCAAGCATCATCATCATAAAT 58.103 30.769 18.24 0.00 0.00 1.40
1739 4316 1.202222 GGGAAGAATCGTGCTGCAATG 60.202 52.381 2.77 0.00 0.00 2.82
1800 4377 3.307904 CCGTTGGTCTTTTATGGGGTAGT 60.308 47.826 0.00 0.00 0.00 2.73
1801 4378 4.080975 CCGTTGGTCTTTTATGGGGTAGTA 60.081 45.833 0.00 0.00 0.00 1.82
1802 4379 4.872124 CGTTGGTCTTTTATGGGGTAGTAC 59.128 45.833 0.00 0.00 0.00 2.73
1890 4467 4.155733 TACATCCGGGCACGCCAG 62.156 66.667 0.58 5.73 39.22 4.85
1919 4541 6.071952 TGCAACTATCAACCAGAAATTCCTTC 60.072 38.462 0.00 0.00 0.00 3.46
1922 4544 8.526147 CAACTATCAACCAGAAATTCCTTCAAT 58.474 33.333 0.00 0.00 36.40 2.57
1948 4593 2.676121 TGGGGATTGCAAGCACCG 60.676 61.111 29.52 0.00 41.95 4.94
1963 4610 5.220854 GCAAGCACCGTCATAATATTTGTCT 60.221 40.000 0.00 0.00 0.00 3.41
1964 4611 6.018262 GCAAGCACCGTCATAATATTTGTCTA 60.018 38.462 0.00 0.00 0.00 2.59
2039 4689 6.604795 AGGGATTGCATTGGATATTAGTATGC 59.395 38.462 0.00 0.00 41.39 3.14
2044 4694 5.580691 TGCATTGGATATTAGTATGCGCTAC 59.419 40.000 9.73 8.91 43.35 3.58
2110 4845 1.961277 CACGTGGAGTTGGAGGCAC 60.961 63.158 7.95 0.00 0.00 5.01
2112 4847 1.669115 CGTGGAGTTGGAGGCACAG 60.669 63.158 0.00 0.00 0.00 3.66
2113 4848 1.754745 GTGGAGTTGGAGGCACAGA 59.245 57.895 0.00 0.00 0.00 3.41
2114 4849 0.326264 GTGGAGTTGGAGGCACAGAT 59.674 55.000 0.00 0.00 0.00 2.90
2115 4850 1.067295 TGGAGTTGGAGGCACAGATT 58.933 50.000 0.00 0.00 0.00 2.40
2116 4851 1.003580 TGGAGTTGGAGGCACAGATTC 59.996 52.381 0.00 0.00 0.00 2.52
2117 4852 1.003580 GGAGTTGGAGGCACAGATTCA 59.996 52.381 0.00 0.00 0.00 2.57
2118 4853 2.354259 GAGTTGGAGGCACAGATTCAG 58.646 52.381 0.00 0.00 0.00 3.02
2160 4910 4.438608 GCTTGATTTGGATCGCATGTGTAA 60.439 41.667 6.09 0.00 34.91 2.41
2191 4944 6.852404 AGTATATCCAATAATGCCAACCAGT 58.148 36.000 0.00 0.00 0.00 4.00
2242 5011 9.247861 ACTATGCCATAATCTTCTTTGTTTTCT 57.752 29.630 0.00 0.00 0.00 2.52
2243 5012 9.512435 CTATGCCATAATCTTCTTTGTTTTCTG 57.488 33.333 0.00 0.00 0.00 3.02
2244 5013 7.523293 TGCCATAATCTTCTTTGTTTTCTGA 57.477 32.000 0.00 0.00 0.00 3.27
2308 5098 3.494626 GCATATGAATTCGTCGACATGGT 59.505 43.478 17.16 0.00 0.00 3.55
2314 5105 0.032403 TTCGTCGACATGGTCCGTTT 59.968 50.000 17.16 0.00 0.00 3.60
2317 5108 1.652124 CGTCGACATGGTCCGTTTAAG 59.348 52.381 17.16 0.00 0.00 1.85
2318 5109 2.680577 GTCGACATGGTCCGTTTAAGT 58.319 47.619 11.55 0.00 0.00 2.24
2319 5110 3.670359 CGTCGACATGGTCCGTTTAAGTA 60.670 47.826 17.16 0.00 0.00 2.24
2320 5111 4.236935 GTCGACATGGTCCGTTTAAGTAA 58.763 43.478 11.55 0.00 0.00 2.24
2321 5112 4.090498 GTCGACATGGTCCGTTTAAGTAAC 59.910 45.833 11.55 0.00 0.00 2.50
2322 5113 3.989167 CGACATGGTCCGTTTAAGTAACA 59.011 43.478 0.00 0.00 36.50 2.41
2323 5114 4.628333 CGACATGGTCCGTTTAAGTAACAT 59.372 41.667 0.00 0.00 36.50 2.71
2341 5132 9.512435 AAGTAACATACATCAGTGTCGTATTAC 57.488 33.333 4.97 7.04 39.77 1.89
2347 5138 9.893305 CATACATCAGTGTCGTATTACTAATCA 57.107 33.333 4.97 0.00 39.77 2.57
2721 5520 5.539955 TCTTTTCTTTTGAAGAATCTGGGGG 59.460 40.000 4.16 0.00 46.15 5.40
2737 5536 5.762279 TCTGGGGGAAACAATTATCTAACC 58.238 41.667 0.00 0.00 0.00 2.85
2840 5655 4.136517 TGAAAACGTTCTTATTGACCGC 57.863 40.909 0.00 0.00 33.75 5.68
3025 5898 2.224426 TGGTAGCCCCAACTATATTGCG 60.224 50.000 0.00 0.00 41.50 4.85
3209 6082 0.673644 AGCTTCCGTTTGATGACCGG 60.674 55.000 0.00 0.00 43.03 5.28
3241 6115 7.117956 GGTTGTTCTTTATCAGAAGGTAGACAC 59.882 40.741 0.00 0.00 42.55 3.67
3293 6173 7.280876 GTGATATCTGGTGCTTTGTTCTGATAA 59.719 37.037 3.98 0.00 0.00 1.75
3336 6216 9.325198 CAATAATACTACTGTTATCTGGTTGCA 57.675 33.333 0.00 0.00 0.00 4.08
3356 6236 5.263599 TGCATGTAGATTTTCAAGGGTGAT 58.736 37.500 0.00 0.00 32.48 3.06
3686 6568 4.943705 TCCATCCTGAAGCAAATTAGTGAC 59.056 41.667 0.00 0.00 0.00 3.67
3749 6631 2.842457 CTGATCGGAATGGCATCTTCA 58.158 47.619 0.00 0.00 0.00 3.02
4146 7046 5.582689 TCGTCATCACATGATTGAGTACT 57.417 39.130 0.00 0.00 42.04 2.73
4173 7073 8.260114 ACTTTTGAAGGAACTGAAAATGATGTT 58.740 29.630 0.00 0.00 40.86 2.71
4207 7107 2.227865 TCAGCTCAAAATAACGGGCAAC 59.772 45.455 0.00 0.00 0.00 4.17
4288 7189 3.065925 AGCTGCACTTTTCTTCAGTGAAC 59.934 43.478 0.08 0.00 43.90 3.18
4407 7315 2.119495 GAGCTTAGGAAGTCCCATGGA 58.881 52.381 15.22 0.00 37.41 3.41
4440 7348 3.506455 TGTACAGACAGGTAGACAAGAGC 59.494 47.826 0.00 0.00 0.00 4.09
4481 7391 1.470098 CCACTGCCATAACTTCACTGC 59.530 52.381 0.00 0.00 0.00 4.40
4550 7462 8.907222 ATGTTGCTTTCTTGGAATGTATTTTT 57.093 26.923 0.00 0.00 0.00 1.94
4898 7825 9.753674 AAGAGATGAATTATTGACCTGGTTTTA 57.246 29.630 0.00 0.00 0.00 1.52
4925 7855 4.871933 TCTTATCTGCGCCATTCATCTA 57.128 40.909 4.18 0.00 0.00 1.98
4928 7858 2.229675 TCTGCGCCATTCATCTACAG 57.770 50.000 4.18 0.00 0.00 2.74
4977 7907 8.261522 AGTATGAGAAAGATCCCTGTTCTAAAC 58.738 37.037 0.00 0.00 31.80 2.01
5082 8020 7.200434 ACACTCCCTCTGTTCACAAATATAT 57.800 36.000 0.00 0.00 0.00 0.86
5139 8078 5.222631 GGATTGAAATGAGTGAAAAACGCT 58.777 37.500 0.00 0.00 42.47 5.07
5150 8089 6.131544 AGTGAAAAACGCTCTAAAATGTGT 57.868 33.333 0.00 0.00 33.76 3.72
5161 8100 6.584954 GCTCTAAAATGTGTCTATATGCACG 58.415 40.000 0.00 0.00 38.36 5.34
5162 8101 6.346919 GCTCTAAAATGTGTCTATATGCACGG 60.347 42.308 0.00 0.00 38.36 4.94
5213 8152 7.695869 ATATTCGTGAACGGAGAAAGTATTC 57.304 36.000 2.59 0.00 40.29 1.75
5236 8175 7.517614 TCCTCTATAATACTGCTCAAGACAG 57.482 40.000 0.00 0.00 41.08 3.51
5237 8176 7.290813 TCCTCTATAATACTGCTCAAGACAGA 58.709 38.462 0.00 0.00 38.55 3.41
5359 8299 5.221521 ACACAACTCAGTCTGCTATGAGAAA 60.222 40.000 9.06 0.00 44.68 2.52
5364 8304 5.065704 TCAGTCTGCTATGAGAAACACTC 57.934 43.478 0.00 0.00 45.11 3.51
5375 8315 0.868406 GAAACACTCAACAGGGAGCG 59.132 55.000 0.00 0.00 38.50 5.03
5378 8318 1.367471 CACTCAACAGGGAGCGTCA 59.633 57.895 0.00 0.00 38.50 4.35
5439 8379 0.840722 TCCTGGTTTCCCTCACCCTC 60.841 60.000 0.00 0.00 32.71 4.30
5462 8402 6.202331 TCTTTACCTTCCTCATGTGGATCTA 58.798 40.000 16.93 2.16 35.83 1.98
5466 8406 4.536090 ACCTTCCTCATGTGGATCTACAAA 59.464 41.667 16.42 6.73 35.83 2.83
5469 8409 5.955961 TCCTCATGTGGATCTACAAATCA 57.044 39.130 16.42 0.00 33.69 2.57
5495 8435 1.206849 GTCTCAAAGGAGGAGGCTCTG 59.793 57.143 15.23 3.56 41.69 3.35
5541 8481 1.685148 GCAAAAACATTTTGCCCCCA 58.315 45.000 23.27 0.00 46.51 4.96
5542 8482 2.027385 GCAAAAACATTTTGCCCCCAA 58.973 42.857 23.27 0.00 46.51 4.12
5543 8483 2.034432 GCAAAAACATTTTGCCCCCAAG 59.966 45.455 23.27 0.00 46.51 3.61
5544 8484 3.549794 CAAAAACATTTTGCCCCCAAGA 58.450 40.909 2.95 0.00 31.52 3.02
5545 8485 3.941704 AAAACATTTTGCCCCCAAGAA 57.058 38.095 0.00 0.00 31.52 2.52
5546 8486 3.941704 AAACATTTTGCCCCCAAGAAA 57.058 38.095 0.00 0.00 31.52 2.52
5547 8487 3.490439 AACATTTTGCCCCCAAGAAAG 57.510 42.857 0.00 0.00 31.52 2.62
5548 8488 2.688477 ACATTTTGCCCCCAAGAAAGA 58.312 42.857 0.00 0.00 31.52 2.52
5549 8489 2.368548 ACATTTTGCCCCCAAGAAAGAC 59.631 45.455 0.00 0.00 31.52 3.01
5550 8490 2.166907 TTTTGCCCCCAAGAAAGACA 57.833 45.000 0.00 0.00 31.52 3.41
5551 8491 1.703411 TTTGCCCCCAAGAAAGACAG 58.297 50.000 0.00 0.00 31.52 3.51
5552 8492 0.827507 TTGCCCCCAAGAAAGACAGC 60.828 55.000 0.00 0.00 0.00 4.40
5553 8493 1.228552 GCCCCCAAGAAAGACAGCA 60.229 57.895 0.00 0.00 0.00 4.41
5554 8494 1.527433 GCCCCCAAGAAAGACAGCAC 61.527 60.000 0.00 0.00 0.00 4.40
5555 8495 1.237285 CCCCCAAGAAAGACAGCACG 61.237 60.000 0.00 0.00 0.00 5.34
5556 8496 1.237285 CCCCAAGAAAGACAGCACGG 61.237 60.000 0.00 0.00 0.00 4.94
5557 8497 1.576421 CCAAGAAAGACAGCACGGC 59.424 57.895 0.00 0.00 0.00 5.68
5558 8498 1.576421 CAAGAAAGACAGCACGGCC 59.424 57.895 0.00 0.00 0.00 6.13
5559 8499 1.148273 AAGAAAGACAGCACGGCCA 59.852 52.632 2.24 0.00 0.00 5.36
5560 8500 0.250901 AAGAAAGACAGCACGGCCAT 60.251 50.000 2.24 0.00 0.00 4.40
5561 8501 0.674895 AGAAAGACAGCACGGCCATC 60.675 55.000 2.24 0.00 0.00 3.51
5562 8502 0.955428 GAAAGACAGCACGGCCATCA 60.955 55.000 2.24 0.00 0.00 3.07
5563 8503 0.322816 AAAGACAGCACGGCCATCAT 60.323 50.000 2.24 0.00 0.00 2.45
5564 8504 0.322816 AAGACAGCACGGCCATCATT 60.323 50.000 2.24 0.00 0.00 2.57
5565 8505 0.745845 AGACAGCACGGCCATCATTC 60.746 55.000 2.24 0.00 0.00 2.67
5566 8506 1.002257 ACAGCACGGCCATCATTCA 60.002 52.632 2.24 0.00 0.00 2.57
5567 8507 1.028330 ACAGCACGGCCATCATTCAG 61.028 55.000 2.24 0.00 0.00 3.02
5568 8508 1.452651 AGCACGGCCATCATTCAGG 60.453 57.895 2.24 0.00 0.00 3.86
5569 8509 1.750399 GCACGGCCATCATTCAGGT 60.750 57.895 2.24 0.00 0.00 4.00
5570 8510 0.463654 GCACGGCCATCATTCAGGTA 60.464 55.000 2.24 0.00 0.00 3.08
5571 8511 1.299541 CACGGCCATCATTCAGGTAC 58.700 55.000 2.24 0.00 0.00 3.34
5572 8512 0.180406 ACGGCCATCATTCAGGTACC 59.820 55.000 2.73 2.73 0.00 3.34
5573 8513 0.180171 CGGCCATCATTCAGGTACCA 59.820 55.000 15.94 0.00 0.00 3.25
5574 8514 1.202806 CGGCCATCATTCAGGTACCAT 60.203 52.381 15.94 0.00 0.00 3.55
5575 8515 2.508526 GGCCATCATTCAGGTACCATC 58.491 52.381 15.94 0.00 0.00 3.51
5576 8516 2.158623 GGCCATCATTCAGGTACCATCA 60.159 50.000 15.94 0.00 0.00 3.07
5577 8517 3.144506 GCCATCATTCAGGTACCATCAG 58.855 50.000 15.94 0.76 0.00 2.90
5578 8518 3.181451 GCCATCATTCAGGTACCATCAGA 60.181 47.826 15.94 5.62 0.00 3.27
5579 8519 4.384056 CCATCATTCAGGTACCATCAGAC 58.616 47.826 15.94 0.00 0.00 3.51
5580 8520 4.102210 CCATCATTCAGGTACCATCAGACT 59.898 45.833 15.94 0.00 0.00 3.24
5581 8521 4.743057 TCATTCAGGTACCATCAGACTG 57.257 45.455 15.94 10.47 0.00 3.51
5582 8522 3.452264 TCATTCAGGTACCATCAGACTGG 59.548 47.826 15.94 0.00 42.35 4.00
5583 8523 1.866015 TCAGGTACCATCAGACTGGG 58.134 55.000 15.94 0.00 40.85 4.45
5584 8524 1.078823 TCAGGTACCATCAGACTGGGT 59.921 52.381 15.94 5.64 40.85 4.51
5585 8525 1.909302 CAGGTACCATCAGACTGGGTT 59.091 52.381 15.94 0.00 40.85 4.11
5586 8526 3.104512 CAGGTACCATCAGACTGGGTTA 58.895 50.000 15.94 0.00 40.85 2.85
5587 8527 3.517901 CAGGTACCATCAGACTGGGTTAA 59.482 47.826 15.94 0.00 40.85 2.01
5588 8528 4.164221 CAGGTACCATCAGACTGGGTTAAT 59.836 45.833 15.94 0.00 40.85 1.40
5589 8529 4.788617 AGGTACCATCAGACTGGGTTAATT 59.211 41.667 15.94 0.00 40.85 1.40
5590 8530 5.253096 AGGTACCATCAGACTGGGTTAATTT 59.747 40.000 15.94 0.00 40.85 1.82
5591 8531 5.949952 GGTACCATCAGACTGGGTTAATTTT 59.050 40.000 7.15 0.00 40.85 1.82
5592 8532 6.436218 GGTACCATCAGACTGGGTTAATTTTT 59.564 38.462 7.15 0.00 40.85 1.94
5614 8554 8.565896 TTTTTATCAGTCACATTGCTATCTGT 57.434 30.769 0.00 0.00 0.00 3.41
5615 8555 8.565896 TTTTATCAGTCACATTGCTATCTGTT 57.434 30.769 0.00 0.00 0.00 3.16
5616 8556 7.543947 TTATCAGTCACATTGCTATCTGTTG 57.456 36.000 0.00 0.00 0.00 3.33
5617 8557 5.151297 TCAGTCACATTGCTATCTGTTGA 57.849 39.130 0.00 0.00 0.00 3.18
5618 8558 4.931601 TCAGTCACATTGCTATCTGTTGAC 59.068 41.667 0.00 0.00 0.00 3.18
5619 8559 4.692155 CAGTCACATTGCTATCTGTTGACA 59.308 41.667 0.00 0.00 31.59 3.58
5620 8560 5.179929 CAGTCACATTGCTATCTGTTGACAA 59.820 40.000 0.00 0.00 31.59 3.18
5621 8561 5.764686 AGTCACATTGCTATCTGTTGACAAA 59.235 36.000 0.00 0.00 31.59 2.83
5622 8562 6.432162 AGTCACATTGCTATCTGTTGACAAAT 59.568 34.615 0.00 0.00 31.59 2.32
5623 8563 7.040201 AGTCACATTGCTATCTGTTGACAAATT 60.040 33.333 0.00 0.00 31.59 1.82
5624 8564 7.596248 GTCACATTGCTATCTGTTGACAAATTT 59.404 33.333 0.00 0.00 0.00 1.82
5625 8565 7.595875 TCACATTGCTATCTGTTGACAAATTTG 59.404 33.333 16.67 16.67 0.00 2.32
5626 8566 7.595875 CACATTGCTATCTGTTGACAAATTTGA 59.404 33.333 24.64 0.00 0.00 2.69
5627 8567 8.143193 ACATTGCTATCTGTTGACAAATTTGAA 58.857 29.630 24.64 9.47 0.00 2.69
5628 8568 9.146984 CATTGCTATCTGTTGACAAATTTGAAT 57.853 29.630 24.64 2.84 0.00 2.57
5629 8569 8.523523 TTGCTATCTGTTGACAAATTTGAATG 57.476 30.769 24.64 8.23 0.00 2.67
5630 8570 7.092079 TGCTATCTGTTGACAAATTTGAATGG 58.908 34.615 24.64 9.14 0.00 3.16
5631 8571 6.532657 GCTATCTGTTGACAAATTTGAATGGG 59.467 38.462 24.64 9.62 0.00 4.00
5632 8572 4.630111 TCTGTTGACAAATTTGAATGGGC 58.370 39.130 24.64 9.53 0.00 5.36
5633 8573 3.737850 TGTTGACAAATTTGAATGGGCC 58.262 40.909 24.64 0.00 0.00 5.80
5634 8574 3.135348 TGTTGACAAATTTGAATGGGCCA 59.865 39.130 24.64 9.61 0.00 5.36
5635 8575 3.681593 TGACAAATTTGAATGGGCCAG 57.318 42.857 24.64 0.00 0.00 4.85
5636 8576 3.237746 TGACAAATTTGAATGGGCCAGA 58.762 40.909 24.64 0.00 0.00 3.86
5637 8577 3.645212 TGACAAATTTGAATGGGCCAGAA 59.355 39.130 24.64 4.59 0.00 3.02
5638 8578 4.102210 TGACAAATTTGAATGGGCCAGAAA 59.898 37.500 24.64 11.31 0.00 2.52
5639 8579 4.644498 ACAAATTTGAATGGGCCAGAAAG 58.356 39.130 24.64 2.51 0.00 2.62
5640 8580 4.102996 ACAAATTTGAATGGGCCAGAAAGT 59.897 37.500 24.64 7.46 0.00 2.66
5641 8581 4.980339 AATTTGAATGGGCCAGAAAGTT 57.020 36.364 13.78 6.47 0.00 2.66
5642 8582 4.541973 ATTTGAATGGGCCAGAAAGTTC 57.458 40.909 13.78 11.18 0.00 3.01
5643 8583 2.673775 TGAATGGGCCAGAAAGTTCA 57.326 45.000 13.78 13.91 0.00 3.18
5644 8584 3.173953 TGAATGGGCCAGAAAGTTCAT 57.826 42.857 13.78 0.00 0.00 2.57
5645 8585 3.091545 TGAATGGGCCAGAAAGTTCATC 58.908 45.455 13.78 0.00 0.00 2.92
5646 8586 2.905415 ATGGGCCAGAAAGTTCATCA 57.095 45.000 13.78 0.00 0.00 3.07
5647 8587 1.909700 TGGGCCAGAAAGTTCATCAC 58.090 50.000 0.00 0.00 0.00 3.06
5648 8588 1.425066 TGGGCCAGAAAGTTCATCACT 59.575 47.619 0.00 0.00 37.30 3.41
5650 8590 2.489722 GGGCCAGAAAGTTCATCACTTC 59.510 50.000 4.39 0.00 45.77 3.01
5651 8591 3.416156 GGCCAGAAAGTTCATCACTTCT 58.584 45.455 0.00 0.00 45.77 2.85
5652 8592 4.565652 GGGCCAGAAAGTTCATCACTTCTA 60.566 45.833 4.39 0.00 45.77 2.10
5653 8593 5.003804 GGCCAGAAAGTTCATCACTTCTAA 58.996 41.667 0.00 0.00 45.77 2.10
5654 8594 5.649831 GGCCAGAAAGTTCATCACTTCTAAT 59.350 40.000 0.00 0.00 45.77 1.73
5655 8595 6.404074 GGCCAGAAAGTTCATCACTTCTAATG 60.404 42.308 0.00 0.00 45.77 1.90
5656 8596 6.549952 CCAGAAAGTTCATCACTTCTAATGC 58.450 40.000 0.00 0.00 45.77 3.56
5657 8597 6.149973 CCAGAAAGTTCATCACTTCTAATGCA 59.850 38.462 0.00 0.00 45.77 3.96
5658 8598 7.148120 CCAGAAAGTTCATCACTTCTAATGCAT 60.148 37.037 0.00 0.00 45.77 3.96
5659 8599 7.696872 CAGAAAGTTCATCACTTCTAATGCATG 59.303 37.037 0.00 0.00 45.77 4.06
5660 8600 6.446781 AAGTTCATCACTTCTAATGCATGG 57.553 37.500 0.00 0.00 42.62 3.66
5661 8601 4.885907 AGTTCATCACTTCTAATGCATGGG 59.114 41.667 0.00 0.00 27.32 4.00
5662 8602 4.776435 TCATCACTTCTAATGCATGGGA 57.224 40.909 0.00 0.00 0.00 4.37
5663 8603 4.711399 TCATCACTTCTAATGCATGGGAG 58.289 43.478 0.00 3.17 0.00 4.30
5664 8604 4.409901 TCATCACTTCTAATGCATGGGAGA 59.590 41.667 13.28 8.27 0.00 3.71
5665 8605 5.072736 TCATCACTTCTAATGCATGGGAGAT 59.927 40.000 13.28 6.10 0.00 2.75
5666 8606 4.965814 TCACTTCTAATGCATGGGAGATC 58.034 43.478 13.28 0.00 0.00 2.75
5667 8607 4.409901 TCACTTCTAATGCATGGGAGATCA 59.590 41.667 13.28 0.00 0.00 2.92
5668 8608 5.072736 TCACTTCTAATGCATGGGAGATCAT 59.927 40.000 13.28 0.00 0.00 2.45
5669 8609 5.768662 CACTTCTAATGCATGGGAGATCATT 59.231 40.000 13.28 0.00 34.08 2.57
5670 8610 6.264744 CACTTCTAATGCATGGGAGATCATTT 59.735 38.462 13.28 0.00 32.20 2.32
5671 8611 6.489361 ACTTCTAATGCATGGGAGATCATTTC 59.511 38.462 13.28 0.00 32.20 2.17
5672 8612 5.944135 TCTAATGCATGGGAGATCATTTCA 58.056 37.500 0.00 0.00 32.20 2.69
5673 8613 4.931661 AATGCATGGGAGATCATTTCAC 57.068 40.909 0.00 0.00 0.00 3.18
5674 8614 3.369242 TGCATGGGAGATCATTTCACA 57.631 42.857 0.00 0.00 31.52 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.540830 ACAAGAGAGCACTCCCGTCT 60.541 55.000 7.60 0.00 43.53 4.18
2 3 0.389166 CACAAGAGAGCACTCCCGTC 60.389 60.000 7.60 0.00 43.53 4.79
3 4 0.827925 TCACAAGAGAGCACTCCCGT 60.828 55.000 7.60 2.51 43.53 5.28
5 6 1.406614 CCATCACAAGAGAGCACTCCC 60.407 57.143 7.60 0.00 43.53 4.30
7 8 2.028658 TGACCATCACAAGAGAGCACTC 60.029 50.000 2.51 2.51 42.90 3.51
8 9 1.973515 TGACCATCACAAGAGAGCACT 59.026 47.619 0.00 0.00 0.00 4.40
9 10 2.462456 TGACCATCACAAGAGAGCAC 57.538 50.000 0.00 0.00 0.00 4.40
10 11 3.490439 TTTGACCATCACAAGAGAGCA 57.510 42.857 0.00 0.00 0.00 4.26
11 12 3.057946 GGTTTTGACCATCACAAGAGAGC 60.058 47.826 0.00 0.00 0.00 4.09
12 13 3.503748 GGGTTTTGACCATCACAAGAGAG 59.496 47.826 0.00 0.00 0.00 3.20
13 14 3.117701 TGGGTTTTGACCATCACAAGAGA 60.118 43.478 0.00 0.00 31.83 3.10
14 15 3.004734 GTGGGTTTTGACCATCACAAGAG 59.995 47.826 0.00 0.00 40.70 2.85
15 16 2.955660 GTGGGTTTTGACCATCACAAGA 59.044 45.455 0.00 0.00 40.70 3.02
16 17 2.692557 TGTGGGTTTTGACCATCACAAG 59.307 45.455 5.55 0.00 40.70 3.16
17 18 2.428890 GTGTGGGTTTTGACCATCACAA 59.571 45.455 8.55 0.00 40.70 3.33
18 19 2.028130 GTGTGGGTTTTGACCATCACA 58.972 47.619 13.43 9.31 40.70 3.58
19 20 1.339929 GGTGTGGGTTTTGACCATCAC 59.660 52.381 11.27 11.27 40.70 3.06
20 21 1.698506 GGTGTGGGTTTTGACCATCA 58.301 50.000 0.00 0.00 40.70 3.07
21 22 0.596082 CGGTGTGGGTTTTGACCATC 59.404 55.000 0.00 0.00 40.70 3.51
22 23 0.106419 ACGGTGTGGGTTTTGACCAT 60.106 50.000 0.00 0.00 40.70 3.55
23 24 0.323542 AACGGTGTGGGTTTTGACCA 60.324 50.000 0.00 0.00 35.14 4.02
24 25 0.818938 AAACGGTGTGGGTTTTGACC 59.181 50.000 0.00 0.00 34.08 4.02
25 26 2.944349 TCTAAACGGTGTGGGTTTTGAC 59.056 45.455 0.00 0.00 38.47 3.18
26 27 3.207778 CTCTAAACGGTGTGGGTTTTGA 58.792 45.455 0.00 0.00 38.47 2.69
27 28 2.287368 GCTCTAAACGGTGTGGGTTTTG 60.287 50.000 0.00 0.00 38.47 2.44
28 29 1.951602 GCTCTAAACGGTGTGGGTTTT 59.048 47.619 0.00 0.00 38.47 2.43
29 30 1.134037 TGCTCTAAACGGTGTGGGTTT 60.134 47.619 0.00 0.00 40.45 3.27
30 31 0.470766 TGCTCTAAACGGTGTGGGTT 59.529 50.000 0.00 0.00 0.00 4.11
31 32 0.470766 TTGCTCTAAACGGTGTGGGT 59.529 50.000 0.00 0.00 0.00 4.51
32 33 0.872388 GTTGCTCTAAACGGTGTGGG 59.128 55.000 0.00 0.00 0.00 4.61
33 34 1.878953 AGTTGCTCTAAACGGTGTGG 58.121 50.000 0.00 0.00 35.13 4.17
34 35 2.869801 TGAAGTTGCTCTAAACGGTGTG 59.130 45.455 0.00 0.00 35.13 3.82
35 36 3.188159 TGAAGTTGCTCTAAACGGTGT 57.812 42.857 0.00 0.00 35.13 4.16
36 37 3.603857 CGTTGAAGTTGCTCTAAACGGTG 60.604 47.826 15.35 0.00 39.99 4.94
37 38 2.542595 CGTTGAAGTTGCTCTAAACGGT 59.457 45.455 15.35 0.00 39.99 4.83
38 39 2.661979 GCGTTGAAGTTGCTCTAAACGG 60.662 50.000 20.00 10.40 41.95 4.44
39 40 2.560896 GCGTTGAAGTTGCTCTAAACG 58.439 47.619 17.16 17.16 43.22 3.60
40 41 2.560896 CGCGTTGAAGTTGCTCTAAAC 58.439 47.619 0.00 0.00 0.00 2.01
41 42 1.070175 GCGCGTTGAAGTTGCTCTAAA 60.070 47.619 8.43 0.00 0.00 1.85
45 46 2.127232 GGCGCGTTGAAGTTGCTC 60.127 61.111 8.43 0.00 0.00 4.26
48 49 1.657181 GGTTGGCGCGTTGAAGTTG 60.657 57.895 8.43 0.00 0.00 3.16
53 54 2.136196 GAAATGGGTTGGCGCGTTGA 62.136 55.000 8.43 0.00 36.96 3.18
54 55 1.732683 GAAATGGGTTGGCGCGTTG 60.733 57.895 8.43 0.00 36.96 4.10
58 59 0.179129 CAGATGAAATGGGTTGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
63 64 0.527565 GTGCGCAGATGAAATGGGTT 59.472 50.000 12.22 0.00 33.45 4.11
104 105 0.468029 AGGTTGGGCCAACTGTTCTG 60.468 55.000 39.62 0.00 43.14 3.02
109 110 1.304134 GGGTAGGTTGGGCCAACTG 60.304 63.158 39.62 0.00 43.14 3.16
111 112 0.470268 TTTGGGTAGGTTGGGCCAAC 60.470 55.000 35.93 35.93 42.89 3.77
113 114 0.252012 CATTTGGGTAGGTTGGGCCA 60.252 55.000 0.00 0.00 40.61 5.36
120 121 0.322187 GCACGTCCATTTGGGTAGGT 60.322 55.000 0.00 0.00 38.11 3.08
122 123 0.672401 ACGCACGTCCATTTGGGTAG 60.672 55.000 0.00 0.00 37.15 3.18
124 125 1.964373 GACGCACGTCCATTTGGGT 60.964 57.895 12.04 0.00 41.23 4.51
135 140 3.609422 GACGAAAAGCGGACGCACG 62.609 63.158 19.48 18.38 46.49 5.34
140 145 3.785499 GGCGGACGAAAAGCGGAC 61.785 66.667 0.00 0.00 46.49 4.79
150 155 1.234615 AATGGTTCAACAGGCGGACG 61.235 55.000 0.00 0.00 0.00 4.79
160 165 4.946478 AATTGGGTCGAAAATGGTTCAA 57.054 36.364 0.00 0.00 0.00 2.69
164 169 4.799255 GCTCAAAATTGGGTCGAAAATGGT 60.799 41.667 0.00 0.00 0.00 3.55
170 175 1.885887 CAGGCTCAAAATTGGGTCGAA 59.114 47.619 0.00 0.00 38.59 3.71
171 176 1.533625 CAGGCTCAAAATTGGGTCGA 58.466 50.000 0.00 0.00 38.59 4.20
173 178 1.632589 ACCAGGCTCAAAATTGGGTC 58.367 50.000 0.00 0.00 34.99 4.46
174 179 2.990740 TACCAGGCTCAAAATTGGGT 57.009 45.000 0.00 0.00 34.99 4.51
203 208 3.759828 CGTCCGTTTCGTGTCCGC 61.760 66.667 0.00 0.00 0.00 5.54
214 219 3.688159 GGGTAGGTGTGCGTCCGT 61.688 66.667 0.00 0.00 0.00 4.69
243 261 2.981560 GCCAATGTGCCACCGACTG 61.982 63.158 0.00 0.00 0.00 3.51
260 278 2.677848 GGGGTGGAAGAGAAGGGC 59.322 66.667 0.00 0.00 0.00 5.19
261 279 0.921256 ATGGGGGTGGAAGAGAAGGG 60.921 60.000 0.00 0.00 0.00 3.95
263 281 0.179000 CGATGGGGGTGGAAGAGAAG 59.821 60.000 0.00 0.00 0.00 2.85
265 283 0.976073 GTCGATGGGGGTGGAAGAGA 60.976 60.000 0.00 0.00 0.00 3.10
271 289 0.960364 CTTGTTGTCGATGGGGGTGG 60.960 60.000 0.00 0.00 0.00 4.61
277 295 0.523072 CAAGGGCTTGTTGTCGATGG 59.477 55.000 0.00 0.00 35.92 3.51
278 296 0.109597 GCAAGGGCTTGTTGTCGATG 60.110 55.000 0.00 0.00 42.31 3.84
349 368 1.078426 GAAGGTGTGTCGGGATGGG 60.078 63.158 0.00 0.00 0.00 4.00
352 371 1.265454 GGGAGAAGGTGTGTCGGGAT 61.265 60.000 0.00 0.00 0.00 3.85
354 373 2.663196 GGGAGAAGGTGTGTCGGG 59.337 66.667 0.00 0.00 0.00 5.14
358 377 1.542187 GCGTAGGGGAGAAGGTGTGT 61.542 60.000 0.00 0.00 0.00 3.72
420 439 3.365265 GGTGGAAAGCTGCGGTGG 61.365 66.667 0.00 0.00 0.00 4.61
426 445 1.304464 GGGAAGGGGTGGAAAGCTG 60.304 63.158 0.00 0.00 0.00 4.24
432 451 2.204090 GAGTGGGGAAGGGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
437 456 2.351276 CGTTGGAGTGGGGAAGGG 59.649 66.667 0.00 0.00 0.00 3.95
438 457 1.003718 GACGTTGGAGTGGGGAAGG 60.004 63.158 0.00 0.00 0.00 3.46
439 458 1.374252 CGACGTTGGAGTGGGGAAG 60.374 63.158 0.00 0.00 0.00 3.46
440 459 2.738480 CGACGTTGGAGTGGGGAA 59.262 61.111 0.00 0.00 0.00 3.97
441 460 3.998672 GCGACGTTGGAGTGGGGA 61.999 66.667 4.64 0.00 0.00 4.81
444 463 3.414700 GCAGCGACGTTGGAGTGG 61.415 66.667 13.73 0.00 0.00 4.00
534 553 0.689080 GTCTCCTCTGGATCAGGGCA 60.689 60.000 0.00 0.00 29.10 5.36
541 578 1.134580 CAACGCATGTCTCCTCTGGAT 60.135 52.381 0.00 0.00 0.00 3.41
566 603 2.014554 CGACCCATATTCGTCGGCG 61.015 63.158 1.15 1.15 46.21 6.46
571 608 1.227147 CACGCCGACCCATATTCGT 60.227 57.895 0.00 0.00 34.56 3.85
588 625 4.228567 TCGGCAGTGCGTCCAACA 62.229 61.111 9.45 0.00 0.00 3.33
594 631 3.842925 ATTTGGGTCGGCAGTGCGT 62.843 57.895 9.45 0.00 0.00 5.24
636 673 2.485122 CGTTTGGATTGGCCGCTC 59.515 61.111 0.00 0.00 40.66 5.03
637 674 3.061848 CCGTTTGGATTGGCCGCT 61.062 61.111 0.00 0.00 40.66 5.52
646 683 0.594110 GGCGATTTTGTCCGTTTGGA 59.406 50.000 0.00 0.00 43.88 3.53
647 684 0.727793 CGGCGATTTTGTCCGTTTGG 60.728 55.000 0.00 0.00 38.47 3.28
663 700 1.198608 CGTCGATCTAAACGGACGGC 61.199 60.000 9.78 0.00 35.32 5.68
674 711 0.806868 TAACTCCAACGCGTCGATCT 59.193 50.000 14.44 4.03 0.00 2.75
715 752 5.065346 GCGGAGAAGGAAGATAAAAAGAAGG 59.935 44.000 0.00 0.00 0.00 3.46
716 753 5.877564 AGCGGAGAAGGAAGATAAAAAGAAG 59.122 40.000 0.00 0.00 0.00 2.85
717 754 5.805728 AGCGGAGAAGGAAGATAAAAAGAA 58.194 37.500 0.00 0.00 0.00 2.52
767 807 8.207545 CCTTAAGCTAGTCCAACAGATTAAGAT 58.792 37.037 16.68 0.00 46.35 2.40
769 809 7.556844 TCCTTAAGCTAGTCCAACAGATTAAG 58.443 38.462 10.76 10.76 44.53 1.85
770 810 7.490657 TCCTTAAGCTAGTCCAACAGATTAA 57.509 36.000 0.00 0.00 33.12 1.40
849 894 1.789464 CGTCTCAGAACTTGCTGTGTC 59.211 52.381 0.00 0.00 37.20 3.67
868 913 6.273825 AGCGGGTATTTATAGCTATGAATCG 58.726 40.000 22.88 20.44 36.28 3.34
875 940 4.461781 GTGGAGAGCGGGTATTTATAGCTA 59.538 45.833 0.00 0.00 38.39 3.32
888 953 1.915078 AATTGGGAGGTGGAGAGCGG 61.915 60.000 0.00 0.00 0.00 5.52
890 955 0.462759 CGAATTGGGAGGTGGAGAGC 60.463 60.000 0.00 0.00 0.00 4.09
892 957 1.602237 GCGAATTGGGAGGTGGAGA 59.398 57.895 0.00 0.00 0.00 3.71
899 965 0.807667 CTGACGAGGCGAATTGGGAG 60.808 60.000 0.00 0.00 0.00 4.30
901 967 2.464459 GCTGACGAGGCGAATTGGG 61.464 63.158 0.00 0.00 0.00 4.12
940 1015 2.412195 CGTTCGCGGTGAATTGAATTGA 60.412 45.455 6.13 0.00 39.21 2.57
955 1032 2.423818 GACTCGTTCCGTCGTTCGC 61.424 63.158 0.00 0.00 38.35 4.70
1274 1357 3.198068 TCGCGGTTACTAGTAGTACCAG 58.802 50.000 19.31 13.78 28.93 4.00
1276 1359 4.061596 AGATCGCGGTTACTAGTAGTACC 58.938 47.826 9.62 12.17 28.93 3.34
1363 1583 3.104512 TCCACCAAGGGTACTCTATGTG 58.895 50.000 14.69 14.69 38.24 3.21
1364 1584 3.012502 TCTCCACCAAGGGTACTCTATGT 59.987 47.826 0.00 0.00 38.24 2.29
1365 1585 3.643237 TCTCCACCAAGGGTACTCTATG 58.357 50.000 0.00 0.00 38.24 2.23
1406 1659 9.490663 CAAGCTCGACAAGGTATTTAAATTTAG 57.509 33.333 5.91 0.00 33.60 1.85
1522 1776 2.029623 GATGCTTGCAATCTCCACCAT 58.970 47.619 0.00 0.00 0.00 3.55
1657 4097 0.441145 GTCCATGTGTAACGCGGAAC 59.559 55.000 12.47 8.77 40.85 3.62
1847 4424 3.691342 TTCTCACCGGCCCGAGTG 61.691 66.667 3.71 11.72 35.24 3.51
1890 4467 2.977914 TCTGGTTGATAGTTGCAGCTC 58.022 47.619 6.25 0.00 0.00 4.09
1919 4541 3.192422 TGCAATCCCCACGTTCTTTATTG 59.808 43.478 0.00 0.00 0.00 1.90
1922 4544 2.570415 TGCAATCCCCACGTTCTTTA 57.430 45.000 0.00 0.00 0.00 1.85
1973 4620 7.977904 TGATAAGTGCTGTGAATGTATGAAAG 58.022 34.615 0.00 0.00 0.00 2.62
2069 4722 3.236047 TGCTACAGGTCTTGTGGTCTAA 58.764 45.455 0.00 0.00 41.10 2.10
2112 4847 9.189723 GCATTAATCTTAAAATGGAGCTGAATC 57.810 33.333 0.00 0.00 34.37 2.52
2113 4848 8.921205 AGCATTAATCTTAAAATGGAGCTGAAT 58.079 29.630 0.00 0.00 34.37 2.57
2114 4849 8.297470 AGCATTAATCTTAAAATGGAGCTGAA 57.703 30.769 0.00 0.00 34.37 3.02
2115 4850 7.886629 AGCATTAATCTTAAAATGGAGCTGA 57.113 32.000 0.00 0.00 34.37 4.26
2116 4851 8.192774 TCAAGCATTAATCTTAAAATGGAGCTG 58.807 33.333 0.00 0.00 34.37 4.24
2117 4852 8.297470 TCAAGCATTAATCTTAAAATGGAGCT 57.703 30.769 0.00 0.00 34.37 4.09
2118 4853 9.538508 AATCAAGCATTAATCTTAAAATGGAGC 57.461 29.630 0.99 0.00 34.37 4.70
2160 4910 5.938125 GGCATTATTGGATATACTTGACGGT 59.062 40.000 0.00 0.00 0.00 4.83
2191 4944 1.946984 AGATAAGGACGGGACACCAA 58.053 50.000 0.00 0.00 36.13 3.67
2194 4947 5.048507 GTCATAAAGATAAGGACGGGACAC 58.951 45.833 0.00 0.00 0.00 3.67
2197 4954 6.295123 GCATAGTCATAAAGATAAGGACGGGA 60.295 42.308 0.00 0.00 33.84 5.14
2242 5011 5.942236 CCCAAAGAAATTCTGTCTCTCATCA 59.058 40.000 0.00 0.00 0.00 3.07
2243 5012 5.942826 ACCCAAAGAAATTCTGTCTCTCATC 59.057 40.000 0.00 0.00 0.00 2.92
2244 5013 5.885465 ACCCAAAGAAATTCTGTCTCTCAT 58.115 37.500 0.00 0.00 0.00 2.90
2308 5098 7.380536 ACACTGATGTATGTTACTTAAACGGA 58.619 34.615 0.00 0.00 37.91 4.69
2320 5111 9.894783 GATTAGTAATACGACACTGATGTATGT 57.105 33.333 0.00 0.00 39.95 2.29
2321 5112 9.893305 TGATTAGTAATACGACACTGATGTATG 57.107 33.333 0.00 0.00 39.95 2.39
2323 5114 9.893305 CATGATTAGTAATACGACACTGATGTA 57.107 33.333 0.00 0.00 39.95 2.29
2362 5153 3.083122 AGCAGCAACCTGAATCAAGAT 57.917 42.857 0.00 0.00 41.77 2.40
2485 5279 7.066043 ACAGAGAATTTTGAAATGCAAAGCAAA 59.934 29.630 0.00 0.00 46.38 3.68
2498 5292 6.430925 CCAATGTACCTGACAGAGAATTTTGA 59.569 38.462 3.32 0.00 42.79 2.69
2499 5293 6.207417 ACCAATGTACCTGACAGAGAATTTTG 59.793 38.462 3.32 1.20 42.79 2.44
2554 5348 3.828451 TCTCTTCATTGCCTTTTTCCAGG 59.172 43.478 0.00 0.00 36.95 4.45
2555 5349 5.458041 TTCTCTTCATTGCCTTTTTCCAG 57.542 39.130 0.00 0.00 0.00 3.86
2556 5350 5.867903 TTTCTCTTCATTGCCTTTTTCCA 57.132 34.783 0.00 0.00 0.00 3.53
2558 5352 9.133627 GATAGTTTTCTCTTCATTGCCTTTTTC 57.866 33.333 0.00 0.00 0.00 2.29
2642 5441 3.527434 GTGGTAGACACCCTTTCCG 57.473 57.895 0.00 0.00 45.11 4.30
2677 5476 5.391060 AGAAAAGAAAACTTCAGTCGTCG 57.609 39.130 0.00 0.00 0.00 5.12
2775 5590 4.464597 GGATAAGTCAGGAGAACACAGAGT 59.535 45.833 0.00 0.00 0.00 3.24
2840 5655 4.698780 TCAGAGATCTTGATGTTGCCTTTG 59.301 41.667 0.00 0.00 0.00 2.77
3025 5898 2.236395 TGGCTAGTCTTTTACCTCAGGC 59.764 50.000 0.00 0.00 0.00 4.85
3209 6082 9.178758 ACCTTCTGATAAAGAACAACCATATTC 57.821 33.333 0.00 0.00 40.09 1.75
3293 6173 9.872684 AGTATTATTGGAATGGAATCACAGAAT 57.127 29.630 0.00 0.00 0.00 2.40
3336 6216 5.513233 AGCATCACCCTTGAAAATCTACAT 58.487 37.500 0.00 0.00 34.61 2.29
3356 6236 1.686325 GCCACTCCGGGATCTTAGCA 61.686 60.000 0.00 0.00 34.06 3.49
3385 6265 5.385198 TCCTCTTAAGAAGGTTTTGTGCAT 58.615 37.500 6.63 0.00 0.00 3.96
3686 6568 1.541310 TACTCTTGTCCCCAGGTGCG 61.541 60.000 0.00 0.00 0.00 5.34
3980 6876 3.063180 GCTGATGTGAACCTGATCTTTCG 59.937 47.826 0.00 0.00 0.00 3.46
4146 7046 8.912988 ACATCATTTTCAGTTCCTTCAAAAGTA 58.087 29.630 0.00 0.00 0.00 2.24
4173 7073 7.624360 ATTTTGAGCTGAAATATAACACGGA 57.376 32.000 0.00 0.00 0.00 4.69
4207 7107 0.240945 GGTTGTTCGGTCCATTGCAG 59.759 55.000 0.00 0.00 0.00 4.41
4288 7189 1.366111 CGGTTACCGTTCCCATGCAG 61.366 60.000 16.53 0.00 42.73 4.41
4440 7348 2.979813 GCAAATCCAGTTGTTGTTAGCG 59.020 45.455 0.00 0.00 0.00 4.26
4481 7391 1.534163 CACCAGCACTGAAGATGTGTG 59.466 52.381 0.00 0.00 37.70 3.82
4550 7462 2.627221 GAGATCCTATCACAGAGCTGCA 59.373 50.000 1.02 0.00 0.00 4.41
4659 7571 1.845809 CTCGTCACAAGGCAACCAGC 61.846 60.000 0.00 0.00 44.65 4.85
4847 7770 9.739276 TTATATGTCAATGTTCCTTTCTTCAGT 57.261 29.630 0.00 0.00 0.00 3.41
4898 7825 5.368145 TGAATGGCGCAGATAAGAAGTAAT 58.632 37.500 10.83 0.00 0.00 1.89
4925 7855 7.936847 TCTTGATGTATTGGTTAGAACAACTGT 59.063 33.333 0.00 0.00 0.00 3.55
4928 7858 8.324163 ACTCTTGATGTATTGGTTAGAACAAC 57.676 34.615 0.00 0.00 0.00 3.32
4977 7907 8.182881 GCTAGTACCTCACGGTCATATATTTAG 58.817 40.741 0.00 0.00 44.21 1.85
4986 7916 0.036105 TCGCTAGTACCTCACGGTCA 60.036 55.000 0.00 0.00 44.21 4.02
5014 7944 4.754114 TCATTTTGAATTTTTGCTTCCCCG 59.246 37.500 0.00 0.00 0.00 5.73
5015 7945 6.262944 AGTTCATTTTGAATTTTTGCTTCCCC 59.737 34.615 0.00 0.00 38.79 4.81
5092 8030 8.963725 TCCGTATGTAGTCCATATCGAAATATT 58.036 33.333 0.00 0.00 38.29 1.28
5100 8038 8.873830 CATTTCAATCCGTATGTAGTCCATATC 58.126 37.037 0.00 0.00 38.29 1.63
5139 8078 5.989168 CCCGTGCATATAGACACATTTTAGA 59.011 40.000 8.23 0.00 36.57 2.10
5150 8089 4.681074 TTGTGAATCCCGTGCATATAGA 57.319 40.909 0.00 0.00 0.00 1.98
5188 8127 7.864379 GGAATACTTTCTCCGTTCACGAATATA 59.136 37.037 0.00 0.00 35.25 0.86
5189 8128 6.700520 GGAATACTTTCTCCGTTCACGAATAT 59.299 38.462 0.00 0.00 35.25 1.28
5191 8130 4.868734 GGAATACTTTCTCCGTTCACGAAT 59.131 41.667 0.00 0.00 35.25 3.34
5192 8131 4.021719 AGGAATACTTTCTCCGTTCACGAA 60.022 41.667 0.00 0.00 36.78 3.85
5193 8132 3.508793 AGGAATACTTTCTCCGTTCACGA 59.491 43.478 0.00 0.00 36.78 4.35
5194 8133 3.846360 AGGAATACTTTCTCCGTTCACG 58.154 45.455 0.00 0.00 36.78 4.35
5213 8152 7.230510 ACTCTGTCTTGAGCAGTATTATAGAGG 59.769 40.741 0.00 0.00 37.58 3.69
5236 8175 8.809468 ATCACCTCCCTATTTTTCTAAAACTC 57.191 34.615 0.00 0.00 0.00 3.01
5237 8176 9.244292 GAATCACCTCCCTATTTTTCTAAAACT 57.756 33.333 0.00 0.00 0.00 2.66
5364 8304 0.249868 TCAACTGACGCTCCCTGTTG 60.250 55.000 0.00 0.00 41.65 3.33
5406 8346 1.556911 ACCAGGAGGAGCAGTTGTATG 59.443 52.381 0.00 0.00 38.69 2.39
5439 8379 5.365021 AGATCCACATGAGGAAGGTAAAG 57.635 43.478 16.23 0.00 41.92 1.85
5462 8402 4.828939 TCCTTTGAGACTGCATTGATTTGT 59.171 37.500 0.00 0.00 0.00 2.83
5466 8406 3.265221 TCCTCCTTTGAGACTGCATTGAT 59.735 43.478 0.00 0.00 41.42 2.57
5469 8409 2.026449 CCTCCTCCTTTGAGACTGCATT 60.026 50.000 0.00 0.00 41.42 3.56
5495 8435 1.208706 AGGCTCCTTCCTTTCCTAGC 58.791 55.000 0.00 0.00 30.82 3.42
5529 8469 2.368221 TGTCTTTCTTGGGGGCAAAATG 59.632 45.455 0.00 0.00 0.00 2.32
5533 8473 0.827507 GCTGTCTTTCTTGGGGGCAA 60.828 55.000 0.00 0.00 0.00 4.52
5534 8474 1.228552 GCTGTCTTTCTTGGGGGCA 60.229 57.895 0.00 0.00 0.00 5.36
5535 8475 1.228552 TGCTGTCTTTCTTGGGGGC 60.229 57.895 0.00 0.00 0.00 5.80
5536 8476 1.237285 CGTGCTGTCTTTCTTGGGGG 61.237 60.000 0.00 0.00 0.00 5.40
5537 8477 1.237285 CCGTGCTGTCTTTCTTGGGG 61.237 60.000 0.00 0.00 0.00 4.96
5538 8478 1.856265 GCCGTGCTGTCTTTCTTGGG 61.856 60.000 0.00 0.00 0.00 4.12
5539 8479 1.576421 GCCGTGCTGTCTTTCTTGG 59.424 57.895 0.00 0.00 0.00 3.61
5540 8480 1.165907 TGGCCGTGCTGTCTTTCTTG 61.166 55.000 0.00 0.00 0.00 3.02
5541 8481 0.250901 ATGGCCGTGCTGTCTTTCTT 60.251 50.000 0.00 0.00 0.00 2.52
5542 8482 0.674895 GATGGCCGTGCTGTCTTTCT 60.675 55.000 0.00 0.00 0.00 2.52
5543 8483 0.955428 TGATGGCCGTGCTGTCTTTC 60.955 55.000 0.00 0.00 0.00 2.62
5544 8484 0.322816 ATGATGGCCGTGCTGTCTTT 60.323 50.000 0.00 0.00 0.00 2.52
5545 8485 0.322816 AATGATGGCCGTGCTGTCTT 60.323 50.000 0.00 0.00 0.00 3.01
5546 8486 0.745845 GAATGATGGCCGTGCTGTCT 60.746 55.000 0.00 0.00 0.00 3.41
5547 8487 1.026182 TGAATGATGGCCGTGCTGTC 61.026 55.000 0.00 0.00 0.00 3.51
5548 8488 1.002257 TGAATGATGGCCGTGCTGT 60.002 52.632 0.00 0.00 0.00 4.40
5549 8489 1.721664 CCTGAATGATGGCCGTGCTG 61.722 60.000 0.00 0.00 0.00 4.41
5550 8490 1.452651 CCTGAATGATGGCCGTGCT 60.453 57.895 0.00 0.00 0.00 4.40
5551 8491 0.463654 TACCTGAATGATGGCCGTGC 60.464 55.000 0.00 0.00 0.00 5.34
5552 8492 1.299541 GTACCTGAATGATGGCCGTG 58.700 55.000 0.00 0.00 0.00 4.94
5553 8493 0.180406 GGTACCTGAATGATGGCCGT 59.820 55.000 4.06 0.00 0.00 5.68
5554 8494 0.180171 TGGTACCTGAATGATGGCCG 59.820 55.000 14.36 0.00 0.00 6.13
5555 8495 2.158623 TGATGGTACCTGAATGATGGCC 60.159 50.000 14.36 0.00 0.00 5.36
5556 8496 3.144506 CTGATGGTACCTGAATGATGGC 58.855 50.000 14.36 0.00 0.00 4.40
5557 8497 4.102210 AGTCTGATGGTACCTGAATGATGG 59.898 45.833 14.36 0.00 0.00 3.51
5558 8498 5.055144 CAGTCTGATGGTACCTGAATGATG 58.945 45.833 14.36 1.29 32.06 3.07
5559 8499 4.102210 CCAGTCTGATGGTACCTGAATGAT 59.898 45.833 14.36 0.00 35.47 2.45
5560 8500 3.452264 CCAGTCTGATGGTACCTGAATGA 59.548 47.826 14.36 2.47 35.47 2.57
5561 8501 3.432749 CCCAGTCTGATGGTACCTGAATG 60.433 52.174 14.36 14.03 38.81 2.67
5562 8502 2.774234 CCCAGTCTGATGGTACCTGAAT 59.226 50.000 14.36 0.00 38.81 2.57
5563 8503 2.187958 CCCAGTCTGATGGTACCTGAA 58.812 52.381 14.36 0.00 38.81 3.02
5564 8504 1.078823 ACCCAGTCTGATGGTACCTGA 59.921 52.381 14.36 3.55 38.81 3.86
5565 8505 1.573108 ACCCAGTCTGATGGTACCTG 58.427 55.000 14.36 0.39 38.81 4.00
5566 8506 2.344093 AACCCAGTCTGATGGTACCT 57.656 50.000 14.36 0.00 38.81 3.08
5567 8507 4.772886 ATTAACCCAGTCTGATGGTACC 57.227 45.455 4.43 4.43 38.81 3.34
5568 8508 7.462571 AAAAATTAACCCAGTCTGATGGTAC 57.537 36.000 0.00 0.00 38.81 3.34
5589 8529 8.565896 ACAGATAGCAATGTGACTGATAAAAA 57.434 30.769 0.00 0.00 30.99 1.94
5590 8530 8.453320 CAACAGATAGCAATGTGACTGATAAAA 58.547 33.333 0.00 0.00 30.99 1.52
5591 8531 7.823799 TCAACAGATAGCAATGTGACTGATAAA 59.176 33.333 0.00 0.00 30.99 1.40
5592 8532 7.278646 GTCAACAGATAGCAATGTGACTGATAA 59.721 37.037 0.00 0.00 30.54 1.75
5593 8533 6.758416 GTCAACAGATAGCAATGTGACTGATA 59.242 38.462 0.00 0.00 30.54 2.15
5594 8534 5.583854 GTCAACAGATAGCAATGTGACTGAT 59.416 40.000 0.00 0.00 30.54 2.90
5595 8535 4.931601 GTCAACAGATAGCAATGTGACTGA 59.068 41.667 0.00 0.00 30.99 3.41
5596 8536 4.692155 TGTCAACAGATAGCAATGTGACTG 59.308 41.667 0.00 0.00 33.00 3.51
5597 8537 4.898320 TGTCAACAGATAGCAATGTGACT 58.102 39.130 0.00 0.00 33.00 3.41
5598 8538 5.611796 TTGTCAACAGATAGCAATGTGAC 57.388 39.130 0.00 0.00 32.71 3.67
5599 8539 6.822667 ATTTGTCAACAGATAGCAATGTGA 57.177 33.333 0.00 0.00 30.99 3.58
5600 8540 7.595875 TCAAATTTGTCAACAGATAGCAATGTG 59.404 33.333 17.47 0.00 32.69 3.21
5601 8541 7.660112 TCAAATTTGTCAACAGATAGCAATGT 58.340 30.769 17.47 0.00 0.00 2.71
5602 8542 8.523523 TTCAAATTTGTCAACAGATAGCAATG 57.476 30.769 17.47 0.00 0.00 2.82
5603 8543 9.146984 CATTCAAATTTGTCAACAGATAGCAAT 57.853 29.630 17.47 3.09 0.00 3.56
5604 8544 7.599621 CCATTCAAATTTGTCAACAGATAGCAA 59.400 33.333 17.47 0.83 0.00 3.91
5605 8545 7.092079 CCATTCAAATTTGTCAACAGATAGCA 58.908 34.615 17.47 0.00 0.00 3.49
5606 8546 6.532657 CCCATTCAAATTTGTCAACAGATAGC 59.467 38.462 17.47 0.00 0.00 2.97
5607 8547 6.532657 GCCCATTCAAATTTGTCAACAGATAG 59.467 38.462 17.47 0.36 0.00 2.08
5608 8548 6.397272 GCCCATTCAAATTTGTCAACAGATA 58.603 36.000 17.47 0.00 0.00 1.98
5609 8549 5.240121 GCCCATTCAAATTTGTCAACAGAT 58.760 37.500 17.47 0.61 0.00 2.90
5610 8550 4.502950 GGCCCATTCAAATTTGTCAACAGA 60.503 41.667 17.47 0.00 0.00 3.41
5611 8551 3.747529 GGCCCATTCAAATTTGTCAACAG 59.252 43.478 17.47 5.51 0.00 3.16
5612 8552 3.135348 TGGCCCATTCAAATTTGTCAACA 59.865 39.130 17.47 6.77 0.00 3.33
5613 8553 3.737850 TGGCCCATTCAAATTTGTCAAC 58.262 40.909 17.47 4.52 0.00 3.18
5614 8554 3.645212 TCTGGCCCATTCAAATTTGTCAA 59.355 39.130 17.47 6.43 0.00 3.18
5615 8555 3.237746 TCTGGCCCATTCAAATTTGTCA 58.762 40.909 17.47 6.67 0.00 3.58
5616 8556 3.959535 TCTGGCCCATTCAAATTTGTC 57.040 42.857 17.47 0.00 0.00 3.18
5617 8557 4.102996 ACTTTCTGGCCCATTCAAATTTGT 59.897 37.500 17.47 0.00 0.00 2.83
5618 8558 4.644498 ACTTTCTGGCCCATTCAAATTTG 58.356 39.130 12.15 12.15 0.00 2.32
5619 8559 4.980339 ACTTTCTGGCCCATTCAAATTT 57.020 36.364 0.00 0.00 0.00 1.82
5620 8560 4.347583 TGAACTTTCTGGCCCATTCAAATT 59.652 37.500 0.00 0.00 0.00 1.82
5621 8561 3.903090 TGAACTTTCTGGCCCATTCAAAT 59.097 39.130 0.00 0.00 0.00 2.32
5622 8562 3.303938 TGAACTTTCTGGCCCATTCAAA 58.696 40.909 0.00 0.00 0.00 2.69
5623 8563 2.956132 TGAACTTTCTGGCCCATTCAA 58.044 42.857 0.00 0.00 0.00 2.69
5624 8564 2.673775 TGAACTTTCTGGCCCATTCA 57.326 45.000 0.00 0.00 0.00 2.57
5625 8565 3.091545 TGATGAACTTTCTGGCCCATTC 58.908 45.455 0.00 0.00 0.00 2.67
5626 8566 2.827921 GTGATGAACTTTCTGGCCCATT 59.172 45.455 0.00 0.00 0.00 3.16
5627 8567 2.042162 AGTGATGAACTTTCTGGCCCAT 59.958 45.455 0.00 0.00 34.57 4.00
5628 8568 1.425066 AGTGATGAACTTTCTGGCCCA 59.575 47.619 0.00 0.00 34.57 5.36
5629 8569 2.206576 AGTGATGAACTTTCTGGCCC 57.793 50.000 0.00 0.00 34.57 5.80
5638 8578 4.885907 CCCATGCATTAGAAGTGATGAACT 59.114 41.667 0.00 0.00 42.60 3.01
5639 8579 4.883585 TCCCATGCATTAGAAGTGATGAAC 59.116 41.667 0.00 0.00 0.00 3.18
5640 8580 5.104402 TCTCCCATGCATTAGAAGTGATGAA 60.104 40.000 0.00 0.00 0.00 2.57
5641 8581 4.409901 TCTCCCATGCATTAGAAGTGATGA 59.590 41.667 0.00 0.00 0.00 2.92
5642 8582 4.711399 TCTCCCATGCATTAGAAGTGATG 58.289 43.478 0.00 0.00 0.00 3.07
5643 8583 5.072736 TGATCTCCCATGCATTAGAAGTGAT 59.927 40.000 0.00 0.00 0.00 3.06
5644 8584 4.409901 TGATCTCCCATGCATTAGAAGTGA 59.590 41.667 0.00 0.00 0.00 3.41
5645 8585 4.711399 TGATCTCCCATGCATTAGAAGTG 58.289 43.478 0.00 0.00 0.00 3.16
5646 8586 5.579753 ATGATCTCCCATGCATTAGAAGT 57.420 39.130 0.00 0.00 0.00 3.01
5647 8587 6.489022 TGAAATGATCTCCCATGCATTAGAAG 59.511 38.462 0.00 0.00 31.30 2.85
5648 8588 6.263842 GTGAAATGATCTCCCATGCATTAGAA 59.736 38.462 0.00 0.00 31.30 2.10
5649 8589 5.766670 GTGAAATGATCTCCCATGCATTAGA 59.233 40.000 0.00 0.56 31.30 2.10
5650 8590 5.533528 TGTGAAATGATCTCCCATGCATTAG 59.466 40.000 0.00 0.00 31.30 1.73
5651 8591 5.447757 TGTGAAATGATCTCCCATGCATTA 58.552 37.500 0.00 0.00 31.30 1.90
5652 8592 4.283337 TGTGAAATGATCTCCCATGCATT 58.717 39.130 0.00 0.00 32.75 3.56
5653 8593 3.905968 TGTGAAATGATCTCCCATGCAT 58.094 40.909 0.00 0.00 0.00 3.96
5654 8594 3.369242 TGTGAAATGATCTCCCATGCA 57.631 42.857 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.