Multiple sequence alignment - TraesCS1B01G097900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G097900 chr1B 100.000 1614 0 0 699 2312 104481796 104480183 0.000000e+00 2981
1 TraesCS1B01G097900 chr1B 85.436 1078 93 27 714 1744 527288009 527289069 0.000000e+00 1062
2 TraesCS1B01G097900 chr1B 100.000 511 0 0 1 511 104482494 104481984 0.000000e+00 944
3 TraesCS1B01G097900 chr1B 83.995 731 83 22 737 1446 608335898 608335181 0.000000e+00 671
4 TraesCS1B01G097900 chr1B 83.065 744 80 28 737 1446 607317036 607316305 3.240000e-178 634
5 TraesCS1B01G097900 chr1B 86.456 443 38 10 1 422 592309037 592309478 1.250000e-127 466
6 TraesCS1B01G097900 chr1B 86.456 443 38 10 1 422 592350854 592351295 1.250000e-127 466
7 TraesCS1B01G097900 chr1B 86.230 443 39 11 1 422 592267905 592268346 5.820000e-126 460
8 TraesCS1B01G097900 chr1B 87.566 378 39 7 1627 2003 521767559 521767929 4.560000e-117 431
9 TraesCS1B01G097900 chr1B 86.019 422 33 10 1911 2312 527289882 527290297 1.640000e-116 429
10 TraesCS1B01G097900 chr1B 93.137 102 5 1 1812 1913 527289071 527289170 5.150000e-32 148
11 TraesCS1B01G097900 chr1A 92.871 1529 56 19 717 2218 62794766 62793264 0.000000e+00 2170
12 TraesCS1B01G097900 chr1A 86.266 1165 105 35 781 1903 490418084 490419235 0.000000e+00 1214
13 TraesCS1B01G097900 chr1A 89.332 928 77 11 729 1637 490759784 490760708 0.000000e+00 1146
14 TraesCS1B01G097900 chr1A 86.742 445 34 7 1887 2312 490419423 490419861 2.690000e-129 472
15 TraesCS1B01G097900 chr1A 87.185 437 29 9 1895 2312 490778341 490778769 2.690000e-129 472
16 TraesCS1B01G097900 chr1A 94.561 239 6 6 1 234 441796014 441796250 1.690000e-96 363
17 TraesCS1B01G097900 chr1A 90.833 240 12 5 1632 1870 490777846 490778076 1.720000e-81 313
18 TraesCS1B01G097900 chr1A 95.588 68 1 1 2245 2312 62793263 62793198 8.730000e-20 108
19 TraesCS1B01G097900 chr1D 94.283 1102 41 8 717 1799 63682370 63681272 0.000000e+00 1666
20 TraesCS1B01G097900 chr1D 82.270 846 101 35 731 1538 388603357 388604191 0.000000e+00 686
21 TraesCS1B01G097900 chr1D 84.555 641 53 14 1331 1936 394490842 394490213 5.500000e-166 593
22 TraesCS1B01G097900 chr1D 91.954 174 14 0 2081 2254 394490181 394490008 6.380000e-61 244
23 TraesCS1B01G097900 chr6B 87.771 1014 79 20 729 1711 679983702 679982703 0.000000e+00 1144
24 TraesCS1B01G097900 chr6B 87.361 451 33 14 1 429 63262197 63262645 1.600000e-136 496
25 TraesCS1B01G097900 chr6B 86.801 447 32 12 1 422 89519486 89519042 7.480000e-130 473
26 TraesCS1B01G097900 chr6B 85.271 387 27 12 1784 2143 679982685 679982302 2.810000e-99 372
27 TraesCS1B01G097900 chr4B 89.640 444 24 4 1 422 52928709 52929152 1.560000e-151 545
28 TraesCS1B01G097900 chr7A 88.989 445 26 12 1 422 130300265 130299821 1.570000e-146 529
29 TraesCS1B01G097900 chr5A 89.731 409 26 10 1 393 426267056 426267464 2.050000e-140 508
30 TraesCS1B01G097900 chr3B 88.090 445 30 12 1 422 728973911 728974355 7.370000e-140 507
31 TraesCS1B01G097900 chr2D 87.416 445 31 9 1 422 520039711 520040153 2.670000e-134 488
32 TraesCS1B01G097900 chr6A 86.522 460 37 14 1 435 40587529 40587988 1.240000e-132 483
33 TraesCS1B01G097900 chr4A 87.133 443 35 11 1 422 668744508 668744067 1.240000e-132 483
34 TraesCS1B01G097900 chr4A 93.878 245 11 3 1 244 725818551 725818310 1.310000e-97 366
35 TraesCS1B01G097900 chr4A 93.469 245 12 3 1 244 725763396 725763155 6.070000e-96 361
36 TraesCS1B01G097900 chr5B 86.907 443 33 11 1 422 642912968 642912530 7.480000e-130 473
37 TraesCS1B01G097900 chr3A 94.561 239 6 6 1 234 499681944 499682180 1.690000e-96 363
38 TraesCS1B01G097900 chrUn 85.096 208 23 3 222 422 32063905 32064111 3.010000e-49 206
39 TraesCS1B01G097900 chr3D 83.537 164 21 3 1601 1763 114880089 114879931 5.150000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G097900 chr1B 104480183 104482494 2311 True 1962.500000 2981 100.000000 1 2312 2 chr1B.!!$R3 2311
1 TraesCS1B01G097900 chr1B 608335181 608335898 717 True 671.000000 671 83.995000 737 1446 1 chr1B.!!$R2 709
2 TraesCS1B01G097900 chr1B 607316305 607317036 731 True 634.000000 634 83.065000 737 1446 1 chr1B.!!$R1 709
3 TraesCS1B01G097900 chr1B 527288009 527290297 2288 False 546.333333 1062 88.197333 714 2312 3 chr1B.!!$F5 1598
4 TraesCS1B01G097900 chr1A 490759784 490760708 924 False 1146.000000 1146 89.332000 729 1637 1 chr1A.!!$F2 908
5 TraesCS1B01G097900 chr1A 62793198 62794766 1568 True 1139.000000 2170 94.229500 717 2312 2 chr1A.!!$R1 1595
6 TraesCS1B01G097900 chr1A 490418084 490419861 1777 False 843.000000 1214 86.504000 781 2312 2 chr1A.!!$F3 1531
7 TraesCS1B01G097900 chr1A 490777846 490778769 923 False 392.500000 472 89.009000 1632 2312 2 chr1A.!!$F4 680
8 TraesCS1B01G097900 chr1D 63681272 63682370 1098 True 1666.000000 1666 94.283000 717 1799 1 chr1D.!!$R1 1082
9 TraesCS1B01G097900 chr1D 388603357 388604191 834 False 686.000000 686 82.270000 731 1538 1 chr1D.!!$F1 807
10 TraesCS1B01G097900 chr1D 394490008 394490842 834 True 418.500000 593 88.254500 1331 2254 2 chr1D.!!$R2 923
11 TraesCS1B01G097900 chr6B 679982302 679983702 1400 True 758.000000 1144 86.521000 729 2143 2 chr6B.!!$R2 1414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.036388 ATGAACGCCCACACACTAGG 60.036 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1522 1.60859 AGTTCCATTTCCAGCAACACG 59.391 47.619 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.875094 AAAGAGAGTTGCCATCTGCT 57.125 45.000 0.00 0.00 42.00 4.24
22 23 2.875094 AAGAGAGTTGCCATCTGCTT 57.125 45.000 0.00 0.00 42.00 3.91
23 24 3.988976 AAGAGAGTTGCCATCTGCTTA 57.011 42.857 0.00 0.00 42.00 3.09
24 25 3.258971 AGAGAGTTGCCATCTGCTTAC 57.741 47.619 0.00 0.00 42.00 2.34
25 26 1.929836 GAGAGTTGCCATCTGCTTACG 59.070 52.381 0.00 0.00 42.00 3.18
26 27 1.276421 AGAGTTGCCATCTGCTTACGT 59.724 47.619 0.00 0.00 42.00 3.57
27 28 1.394917 GAGTTGCCATCTGCTTACGTG 59.605 52.381 0.00 0.00 42.00 4.49
28 29 0.179189 GTTGCCATCTGCTTACGTGC 60.179 55.000 0.00 0.00 42.00 5.34
29 30 0.605050 TTGCCATCTGCTTACGTGCA 60.605 50.000 0.00 0.00 42.00 4.57
30 31 1.298157 TGCCATCTGCTTACGTGCAC 61.298 55.000 6.82 6.82 42.00 4.57
31 32 1.298157 GCCATCTGCTTACGTGCACA 61.298 55.000 18.64 0.00 38.12 4.57
32 33 0.443869 CCATCTGCTTACGTGCACAC 59.556 55.000 18.64 0.70 38.12 3.82
33 34 1.432514 CATCTGCTTACGTGCACACT 58.567 50.000 18.64 3.22 38.12 3.55
34 35 2.606108 CATCTGCTTACGTGCACACTA 58.394 47.619 18.64 2.12 38.12 2.74
35 36 2.347697 TCTGCTTACGTGCACACTAG 57.652 50.000 18.64 10.87 38.12 2.57
36 37 1.067846 TCTGCTTACGTGCACACTAGG 60.068 52.381 18.64 6.95 38.12 3.02
37 38 0.669318 TGCTTACGTGCACACTAGGC 60.669 55.000 18.64 16.53 38.12 3.93
38 39 0.669318 GCTTACGTGCACACTAGGCA 60.669 55.000 18.64 0.00 39.32 4.75
39 40 1.350193 CTTACGTGCACACTAGGCAG 58.650 55.000 18.64 0.00 42.85 4.85
40 41 0.677288 TTACGTGCACACTAGGCAGT 59.323 50.000 18.64 6.32 42.85 4.40
41 42 0.677288 TACGTGCACACTAGGCAGTT 59.323 50.000 18.64 0.00 42.85 3.16
42 43 0.880278 ACGTGCACACTAGGCAGTTG 60.880 55.000 18.64 0.00 42.85 3.16
43 44 1.576421 GTGCACACTAGGCAGTTGC 59.424 57.895 13.17 0.00 42.85 4.17
53 54 2.032071 GCAGTTGCCGTGTACCCT 59.968 61.111 0.00 0.00 34.31 4.34
54 55 2.325082 GCAGTTGCCGTGTACCCTG 61.325 63.158 0.00 0.00 34.31 4.45
55 56 2.032071 AGTTGCCGTGTACCCTGC 59.968 61.111 0.00 0.00 0.00 4.85
56 57 2.281208 GTTGCCGTGTACCCTGCA 60.281 61.111 0.00 0.00 0.00 4.41
57 58 1.894756 GTTGCCGTGTACCCTGCAA 60.895 57.895 3.20 3.20 41.08 4.08
58 59 1.152943 TTGCCGTGTACCCTGCAAA 60.153 52.632 4.79 0.00 40.46 3.68
59 60 0.752009 TTGCCGTGTACCCTGCAAAA 60.752 50.000 4.79 0.00 40.46 2.44
60 61 1.284715 GCCGTGTACCCTGCAAAAC 59.715 57.895 0.00 0.00 0.00 2.43
61 62 1.448922 GCCGTGTACCCTGCAAAACA 61.449 55.000 0.00 0.00 0.00 2.83
62 63 0.309612 CCGTGTACCCTGCAAAACAC 59.690 55.000 9.36 9.36 39.04 3.32
63 64 1.018148 CGTGTACCCTGCAAAACACA 58.982 50.000 16.17 4.62 41.79 3.72
64 65 1.606668 CGTGTACCCTGCAAAACACAT 59.393 47.619 16.17 0.00 41.79 3.21
65 66 2.604373 CGTGTACCCTGCAAAACACATG 60.604 50.000 16.17 8.07 41.79 3.21
66 67 1.959985 TGTACCCTGCAAAACACATGG 59.040 47.619 0.00 0.00 0.00 3.66
67 68 0.965439 TACCCTGCAAAACACATGGC 59.035 50.000 0.00 0.00 0.00 4.40
68 69 1.047596 ACCCTGCAAAACACATGGCA 61.048 50.000 0.00 0.00 34.66 4.92
69 70 0.106335 CCCTGCAAAACACATGGCAA 59.894 50.000 0.00 0.00 35.59 4.52
70 71 1.219646 CCTGCAAAACACATGGCAAC 58.780 50.000 0.00 0.00 35.59 4.17
71 72 1.202557 CCTGCAAAACACATGGCAACT 60.203 47.619 0.00 0.00 35.59 3.16
72 73 2.129607 CTGCAAAACACATGGCAACTC 58.870 47.619 0.00 0.00 35.59 3.01
73 74 1.130955 GCAAAACACATGGCAACTCG 58.869 50.000 0.00 0.00 37.61 4.18
74 75 1.769733 CAAAACACATGGCAACTCGG 58.230 50.000 0.00 0.00 37.61 4.63
75 76 1.336440 CAAAACACATGGCAACTCGGA 59.664 47.619 0.00 0.00 37.61 4.55
76 77 1.909700 AAACACATGGCAACTCGGAT 58.090 45.000 0.00 0.00 37.61 4.18
77 78 2.779755 AACACATGGCAACTCGGATA 57.220 45.000 0.00 0.00 37.61 2.59
78 79 2.779755 ACACATGGCAACTCGGATAA 57.220 45.000 0.00 0.00 37.61 1.75
79 80 3.066291 ACACATGGCAACTCGGATAAA 57.934 42.857 0.00 0.00 37.61 1.40
80 81 3.417101 ACACATGGCAACTCGGATAAAA 58.583 40.909 0.00 0.00 37.61 1.52
81 82 3.823873 ACACATGGCAACTCGGATAAAAA 59.176 39.130 0.00 0.00 37.61 1.94
99 100 3.584733 AAAAGAGAGTTGCCACCTTCT 57.415 42.857 0.00 0.00 0.00 2.85
100 101 3.584733 AAAGAGAGTTGCCACCTTCTT 57.415 42.857 0.33 0.33 30.91 2.52
101 102 4.706842 AAAGAGAGTTGCCACCTTCTTA 57.293 40.909 5.35 0.00 30.00 2.10
102 103 4.917906 AAGAGAGTTGCCACCTTCTTAT 57.082 40.909 3.55 0.00 28.93 1.73
103 104 6.374417 AAAGAGAGTTGCCACCTTCTTATA 57.626 37.500 5.35 0.00 30.00 0.98
104 105 6.374417 AAGAGAGTTGCCACCTTCTTATAA 57.626 37.500 3.55 0.00 28.93 0.98
105 106 6.374417 AGAGAGTTGCCACCTTCTTATAAA 57.626 37.500 0.00 0.00 0.00 1.40
106 107 6.410540 AGAGAGTTGCCACCTTCTTATAAAG 58.589 40.000 0.00 0.00 0.00 1.85
107 108 4.944317 AGAGTTGCCACCTTCTTATAAAGC 59.056 41.667 0.00 0.00 0.00 3.51
108 109 4.662278 AGTTGCCACCTTCTTATAAAGCA 58.338 39.130 0.00 0.00 0.00 3.91
109 110 4.459337 AGTTGCCACCTTCTTATAAAGCAC 59.541 41.667 0.00 0.00 0.00 4.40
110 111 4.027674 TGCCACCTTCTTATAAAGCACA 57.972 40.909 0.00 0.00 0.00 4.57
111 112 3.756434 TGCCACCTTCTTATAAAGCACAC 59.244 43.478 0.00 0.00 0.00 3.82
112 113 4.010349 GCCACCTTCTTATAAAGCACACT 58.990 43.478 0.00 0.00 0.00 3.55
113 114 5.183228 GCCACCTTCTTATAAAGCACACTA 58.817 41.667 0.00 0.00 0.00 2.74
114 115 5.294552 GCCACCTTCTTATAAAGCACACTAG 59.705 44.000 0.00 0.00 0.00 2.57
115 116 5.817816 CCACCTTCTTATAAAGCACACTAGG 59.182 44.000 0.00 0.00 0.00 3.02
116 117 5.817816 CACCTTCTTATAAAGCACACTAGGG 59.182 44.000 0.00 0.00 0.00 3.53
117 118 5.104485 ACCTTCTTATAAAGCACACTAGGGG 60.104 44.000 0.00 0.00 0.00 4.79
118 119 4.417426 TCTTATAAAGCACACTAGGGGC 57.583 45.455 0.00 0.00 0.00 5.80
119 120 3.778075 TCTTATAAAGCACACTAGGGGCA 59.222 43.478 7.99 0.00 0.00 5.36
120 121 2.717639 ATAAAGCACACTAGGGGCAG 57.282 50.000 7.99 0.00 0.00 4.85
121 122 1.358152 TAAAGCACACTAGGGGCAGT 58.642 50.000 7.99 0.00 0.00 4.40
122 123 0.478507 AAAGCACACTAGGGGCAGTT 59.521 50.000 7.99 0.00 0.00 3.16
123 124 0.250901 AAGCACACTAGGGGCAGTTG 60.251 55.000 7.99 0.00 0.00 3.16
124 125 2.335712 GCACACTAGGGGCAGTTGC 61.336 63.158 0.00 0.00 41.14 4.17
140 141 4.754570 GCCATGTGCACTGCAAAA 57.245 50.000 19.41 0.00 41.47 2.44
141 142 2.228115 GCCATGTGCACTGCAAAAC 58.772 52.632 19.41 0.00 41.47 2.43
142 143 0.530211 GCCATGTGCACTGCAAAACA 60.530 50.000 19.41 0.00 41.47 2.83
143 144 1.210870 CCATGTGCACTGCAAAACAC 58.789 50.000 19.41 5.86 41.47 3.32
144 145 1.471153 CCATGTGCACTGCAAAACACA 60.471 47.619 19.41 15.23 46.16 3.72
145 146 2.894763 ATGTGCACTGCAAAACACAT 57.105 40.000 19.41 17.73 45.87 3.21
146 147 1.923899 TGTGCACTGCAAAACACATG 58.076 45.000 19.41 0.00 41.47 3.21
147 148 1.210870 GTGCACTGCAAAACACATGG 58.789 50.000 10.32 0.00 41.47 3.66
148 149 0.530211 TGCACTGCAAAACACATGGC 60.530 50.000 0.00 0.00 34.76 4.40
149 150 0.530211 GCACTGCAAAACACATGGCA 60.530 50.000 0.00 0.00 34.66 4.92
150 151 1.937278 CACTGCAAAACACATGGCAA 58.063 45.000 0.00 0.00 35.59 4.52
151 152 1.593933 CACTGCAAAACACATGGCAAC 59.406 47.619 0.00 0.00 35.59 4.17
152 153 1.481772 ACTGCAAAACACATGGCAACT 59.518 42.857 0.00 0.00 35.59 3.16
153 154 2.692557 ACTGCAAAACACATGGCAACTA 59.307 40.909 0.00 0.00 35.59 2.24
154 155 3.243501 ACTGCAAAACACATGGCAACTAG 60.244 43.478 0.00 0.00 35.59 2.57
155 156 2.061028 GCAAAACACATGGCAACTAGC 58.939 47.619 0.00 0.00 44.65 3.42
164 165 4.404691 GCAACTAGCAGCTTGGGT 57.595 55.556 0.00 0.00 44.79 4.51
165 166 1.878775 GCAACTAGCAGCTTGGGTG 59.121 57.895 0.00 4.37 44.79 4.61
166 167 0.890996 GCAACTAGCAGCTTGGGTGT 60.891 55.000 0.00 0.00 44.79 4.16
167 168 0.877071 CAACTAGCAGCTTGGGTGTG 59.123 55.000 0.00 0.00 33.19 3.82
168 169 0.250901 AACTAGCAGCTTGGGTGTGG 60.251 55.000 0.00 0.00 33.19 4.17
169 170 1.377725 CTAGCAGCTTGGGTGTGGG 60.378 63.158 0.00 0.00 33.19 4.61
170 171 1.841302 CTAGCAGCTTGGGTGTGGGA 61.841 60.000 0.00 0.00 33.19 4.37
171 172 1.841302 TAGCAGCTTGGGTGTGGGAG 61.841 60.000 0.00 0.00 33.19 4.30
172 173 3.160585 CAGCTTGGGTGTGGGAGA 58.839 61.111 0.00 0.00 0.00 3.71
173 174 1.002868 CAGCTTGGGTGTGGGAGAG 60.003 63.158 0.00 0.00 0.00 3.20
174 175 2.227036 AGCTTGGGTGTGGGAGAGG 61.227 63.158 0.00 0.00 0.00 3.69
175 176 2.224159 GCTTGGGTGTGGGAGAGGA 61.224 63.158 0.00 0.00 0.00 3.71
176 177 1.986413 CTTGGGTGTGGGAGAGGAG 59.014 63.158 0.00 0.00 0.00 3.69
177 178 0.545309 CTTGGGTGTGGGAGAGGAGA 60.545 60.000 0.00 0.00 0.00 3.71
178 179 0.836400 TTGGGTGTGGGAGAGGAGAC 60.836 60.000 0.00 0.00 0.00 3.36
179 180 2.352032 GGGTGTGGGAGAGGAGACG 61.352 68.421 0.00 0.00 0.00 4.18
180 181 1.606889 GGTGTGGGAGAGGAGACGT 60.607 63.158 0.00 0.00 0.00 4.34
181 182 1.587054 GTGTGGGAGAGGAGACGTG 59.413 63.158 0.00 0.00 0.00 4.49
182 183 2.276116 TGTGGGAGAGGAGACGTGC 61.276 63.158 0.00 0.00 0.00 5.34
183 184 2.117423 TGGGAGAGGAGACGTGCA 59.883 61.111 0.00 0.00 0.00 4.57
184 185 2.276116 TGGGAGAGGAGACGTGCAC 61.276 63.158 6.82 6.82 0.00 4.57
185 186 2.179517 GGAGAGGAGACGTGCACG 59.820 66.667 35.99 35.99 46.33 5.34
195 196 2.102357 CGTGCACGTAGGCGAGAT 59.898 61.111 30.50 0.00 42.00 2.75
196 197 2.224217 CGTGCACGTAGGCGAGATG 61.224 63.158 30.50 0.00 42.00 2.90
197 198 1.878522 GTGCACGTAGGCGAGATGG 60.879 63.158 0.00 0.00 42.00 3.51
198 199 2.962253 GCACGTAGGCGAGATGGC 60.962 66.667 0.00 0.00 45.27 4.40
216 217 0.109132 GCAAATGCCCACACACTAGC 60.109 55.000 0.00 0.00 34.31 3.42
217 218 1.246649 CAAATGCCCACACACTAGCA 58.753 50.000 0.00 0.00 40.00 3.49
218 219 1.068333 CAAATGCCCACACACTAGCAC 60.068 52.381 0.00 0.00 38.21 4.40
219 220 0.401738 AATGCCCACACACTAGCACT 59.598 50.000 0.00 0.00 38.21 4.40
220 221 0.401738 ATGCCCACACACTAGCACTT 59.598 50.000 0.00 0.00 38.21 3.16
221 222 0.534877 TGCCCACACACTAGCACTTG 60.535 55.000 0.00 0.00 0.00 3.16
222 223 0.535102 GCCCACACACTAGCACTTGT 60.535 55.000 0.00 0.00 0.00 3.16
224 225 0.588252 CCACACACTAGCACTTGTGC 59.412 55.000 16.98 16.98 45.92 4.57
225 226 0.233074 CACACACTAGCACTTGTGCG 59.767 55.000 18.32 9.14 45.92 5.34
226 227 1.205064 CACACTAGCACTTGTGCGC 59.795 57.895 18.32 0.00 39.36 6.09
227 228 2.310233 ACACTAGCACTTGTGCGCG 61.310 57.895 18.32 15.32 39.36 6.86
228 229 3.414700 ACTAGCACTTGTGCGCGC 61.415 61.111 27.26 27.26 40.27 6.86
229 230 4.489795 CTAGCACTTGTGCGCGCG 62.490 66.667 28.44 28.44 40.27 6.86
248 249 4.169102 GCACGAACTGCATCTCGA 57.831 55.556 20.64 0.00 46.29 4.04
249 250 1.704582 GCACGAACTGCATCTCGAC 59.295 57.895 20.64 10.62 46.29 4.20
250 251 1.687494 GCACGAACTGCATCTCGACC 61.687 60.000 20.64 9.44 46.29 4.79
251 252 0.388520 CACGAACTGCATCTCGACCA 60.389 55.000 20.64 0.00 38.43 4.02
252 253 0.388649 ACGAACTGCATCTCGACCAC 60.389 55.000 20.64 0.00 38.43 4.16
253 254 0.388520 CGAACTGCATCTCGACCACA 60.389 55.000 11.12 0.00 37.23 4.17
254 255 1.737029 CGAACTGCATCTCGACCACAT 60.737 52.381 11.12 0.00 37.23 3.21
255 256 2.479560 CGAACTGCATCTCGACCACATA 60.480 50.000 11.12 0.00 37.23 2.29
256 257 2.586258 ACTGCATCTCGACCACATAC 57.414 50.000 0.00 0.00 0.00 2.39
257 258 1.137086 ACTGCATCTCGACCACATACC 59.863 52.381 0.00 0.00 0.00 2.73
258 259 1.136891 CTGCATCTCGACCACATACCA 59.863 52.381 0.00 0.00 0.00 3.25
259 260 1.136891 TGCATCTCGACCACATACCAG 59.863 52.381 0.00 0.00 0.00 4.00
260 261 1.858091 CATCTCGACCACATACCAGC 58.142 55.000 0.00 0.00 0.00 4.85
261 262 0.753262 ATCTCGACCACATACCAGCC 59.247 55.000 0.00 0.00 0.00 4.85
262 263 1.144057 CTCGACCACATACCAGCCC 59.856 63.158 0.00 0.00 0.00 5.19
263 264 2.189521 CGACCACATACCAGCCCC 59.810 66.667 0.00 0.00 0.00 5.80
264 265 2.367202 CGACCACATACCAGCCCCT 61.367 63.158 0.00 0.00 0.00 4.79
265 266 1.527370 GACCACATACCAGCCCCTC 59.473 63.158 0.00 0.00 0.00 4.30
266 267 1.984288 GACCACATACCAGCCCCTCC 61.984 65.000 0.00 0.00 0.00 4.30
267 268 1.694169 CCACATACCAGCCCCTCCT 60.694 63.158 0.00 0.00 0.00 3.69
268 269 1.528824 CACATACCAGCCCCTCCTG 59.471 63.158 0.00 0.00 0.00 3.86
269 270 1.082954 ACATACCAGCCCCTCCTGT 59.917 57.895 0.00 0.00 0.00 4.00
270 271 1.274703 ACATACCAGCCCCTCCTGTG 61.275 60.000 0.00 0.00 0.00 3.66
271 272 1.082954 ATACCAGCCCCTCCTGTGT 59.917 57.895 0.00 0.00 0.00 3.72
272 273 1.274703 ATACCAGCCCCTCCTGTGTG 61.275 60.000 0.00 0.00 0.00 3.82
273 274 4.039092 CCAGCCCCTCCTGTGTGG 62.039 72.222 0.00 0.00 37.10 4.17
274 275 3.252284 CAGCCCCTCCTGTGTGGT 61.252 66.667 0.00 0.00 37.07 4.16
275 276 2.930562 AGCCCCTCCTGTGTGGTC 60.931 66.667 0.00 0.00 37.07 4.02
276 277 3.249189 GCCCCTCCTGTGTGGTCA 61.249 66.667 0.00 0.00 37.07 4.02
277 278 2.829384 GCCCCTCCTGTGTGGTCAA 61.829 63.158 0.00 0.00 37.07 3.18
278 279 1.843421 CCCCTCCTGTGTGGTCAAA 59.157 57.895 0.00 0.00 37.07 2.69
279 280 0.537371 CCCCTCCTGTGTGGTCAAAC 60.537 60.000 0.00 0.00 37.07 2.93
280 281 0.884704 CCCTCCTGTGTGGTCAAACG 60.885 60.000 0.00 0.00 37.07 3.60
281 282 0.884704 CCTCCTGTGTGGTCAAACGG 60.885 60.000 0.00 0.00 37.07 4.44
282 283 1.507141 CTCCTGTGTGGTCAAACGGC 61.507 60.000 0.00 0.00 37.07 5.68
283 284 2.551912 CCTGTGTGGTCAAACGGCC 61.552 63.158 0.00 0.00 0.00 6.13
284 285 2.892334 CTGTGTGGTCAAACGGCCG 61.892 63.158 26.86 26.86 0.00 6.13
285 286 2.898343 GTGTGGTCAAACGGCCGT 60.898 61.111 28.70 28.70 0.00 5.68
286 287 2.897846 TGTGGTCAAACGGCCGTG 60.898 61.111 34.95 21.29 0.00 4.94
287 288 2.898343 GTGGTCAAACGGCCGTGT 60.898 61.111 34.95 26.62 0.00 4.49
288 289 2.897846 TGGTCAAACGGCCGTGTG 60.898 61.111 37.70 37.70 34.78 3.82
289 290 3.656045 GGTCAAACGGCCGTGTGG 61.656 66.667 40.57 28.11 34.27 4.17
290 291 3.656045 GTCAAACGGCCGTGTGGG 61.656 66.667 40.57 25.80 34.27 4.61
308 309 4.444838 CGACCGGATGAACGCCCA 62.445 66.667 9.46 0.00 0.00 5.36
309 310 2.818274 GACCGGATGAACGCCCAC 60.818 66.667 9.46 0.00 0.00 4.61
310 311 3.599285 GACCGGATGAACGCCCACA 62.599 63.158 9.46 0.00 0.00 4.17
311 312 3.124921 CCGGATGAACGCCCACAC 61.125 66.667 0.00 0.00 0.00 3.82
312 313 2.358125 CGGATGAACGCCCACACA 60.358 61.111 0.00 0.00 0.00 3.72
313 314 2.677003 CGGATGAACGCCCACACAC 61.677 63.158 0.00 0.00 0.00 3.82
314 315 1.302511 GGATGAACGCCCACACACT 60.303 57.895 0.00 0.00 0.00 3.55
315 316 0.036765 GGATGAACGCCCACACACTA 60.037 55.000 0.00 0.00 0.00 2.74
316 317 1.359848 GATGAACGCCCACACACTAG 58.640 55.000 0.00 0.00 0.00 2.57
317 318 0.036388 ATGAACGCCCACACACTAGG 60.036 55.000 0.00 0.00 0.00 3.02
318 319 2.032071 AACGCCCACACACTAGGC 59.968 61.111 0.00 0.00 43.53 3.93
319 320 3.546714 AACGCCCACACACTAGGCC 62.547 63.158 0.00 0.00 44.13 5.19
320 321 4.015406 CGCCCACACACTAGGCCA 62.015 66.667 5.01 0.00 44.13 5.36
321 322 2.045926 GCCCACACACTAGGCCAG 60.046 66.667 5.01 2.64 41.00 4.85
322 323 2.895424 GCCCACACACTAGGCCAGT 61.895 63.158 5.01 3.39 41.00 4.00
323 324 1.296715 CCCACACACTAGGCCAGTC 59.703 63.158 5.01 0.00 34.26 3.51
324 325 1.296715 CCACACACTAGGCCAGTCC 59.703 63.158 5.01 0.00 34.26 3.85
326 327 1.557099 CACACACTAGGCCAGTCCTA 58.443 55.000 5.01 0.00 45.41 2.94
327 328 1.204941 CACACACTAGGCCAGTCCTAC 59.795 57.143 5.01 0.00 45.41 3.18
328 329 0.456221 CACACTAGGCCAGTCCTACG 59.544 60.000 5.01 0.00 45.41 3.51
329 330 0.039326 ACACTAGGCCAGTCCTACGT 59.961 55.000 5.01 0.00 45.41 3.57
330 331 0.456221 CACTAGGCCAGTCCTACGTG 59.544 60.000 5.01 0.00 45.41 4.49
331 332 0.683504 ACTAGGCCAGTCCTACGTGG 60.684 60.000 5.01 0.00 45.41 4.94
336 337 2.767536 CCAGTCCTACGTGGCATTG 58.232 57.895 0.00 0.00 35.26 2.82
337 338 0.744414 CCAGTCCTACGTGGCATTGG 60.744 60.000 0.00 0.00 35.26 3.16
338 339 0.249120 CAGTCCTACGTGGCATTGGA 59.751 55.000 0.00 0.00 35.26 3.53
339 340 0.981183 AGTCCTACGTGGCATTGGAA 59.019 50.000 0.00 0.00 35.26 3.53
340 341 1.349688 AGTCCTACGTGGCATTGGAAA 59.650 47.619 0.00 0.00 35.26 3.13
341 342 2.026262 AGTCCTACGTGGCATTGGAAAT 60.026 45.455 0.00 0.00 35.26 2.17
342 343 3.199071 AGTCCTACGTGGCATTGGAAATA 59.801 43.478 0.00 0.00 35.26 1.40
343 344 4.134563 GTCCTACGTGGCATTGGAAATAT 58.865 43.478 0.00 0.00 35.26 1.28
344 345 4.024048 GTCCTACGTGGCATTGGAAATATG 60.024 45.833 0.00 0.00 35.26 1.78
345 346 3.882888 CCTACGTGGCATTGGAAATATGT 59.117 43.478 0.00 0.00 0.00 2.29
346 347 4.024048 CCTACGTGGCATTGGAAATATGTC 60.024 45.833 0.00 0.00 0.00 3.06
347 348 3.351740 ACGTGGCATTGGAAATATGTCA 58.648 40.909 0.00 0.00 35.40 3.58
348 349 3.761218 ACGTGGCATTGGAAATATGTCAA 59.239 39.130 0.00 0.00 39.13 3.18
349 350 4.142403 ACGTGGCATTGGAAATATGTCAAG 60.142 41.667 0.00 0.00 39.13 3.02
350 351 4.096231 CGTGGCATTGGAAATATGTCAAGA 59.904 41.667 0.00 0.00 39.13 3.02
351 352 5.221106 CGTGGCATTGGAAATATGTCAAGAT 60.221 40.000 0.00 0.00 39.13 2.40
352 353 6.576185 GTGGCATTGGAAATATGTCAAGATT 58.424 36.000 0.00 0.00 39.13 2.40
353 354 6.698766 GTGGCATTGGAAATATGTCAAGATTC 59.301 38.462 0.00 0.00 39.13 2.52
354 355 5.916883 GGCATTGGAAATATGTCAAGATTCG 59.083 40.000 0.00 0.00 0.00 3.34
355 356 6.460123 GGCATTGGAAATATGTCAAGATTCGT 60.460 38.462 0.00 0.00 0.00 3.85
356 357 6.415867 GCATTGGAAATATGTCAAGATTCGTG 59.584 38.462 0.00 0.00 0.00 4.35
357 358 5.484173 TGGAAATATGTCAAGATTCGTGC 57.516 39.130 0.00 0.00 0.00 5.34
358 359 4.940654 TGGAAATATGTCAAGATTCGTGCA 59.059 37.500 0.00 0.00 0.00 4.57
359 360 5.163764 TGGAAATATGTCAAGATTCGTGCAC 60.164 40.000 6.82 6.82 0.00 4.57
360 361 5.163764 GGAAATATGTCAAGATTCGTGCACA 60.164 40.000 18.64 0.00 0.00 4.57
361 362 6.441093 AAATATGTCAAGATTCGTGCACAT 57.559 33.333 18.64 3.08 0.00 3.21
362 363 7.254761 GGAAATATGTCAAGATTCGTGCACATA 60.255 37.037 18.64 17.71 32.69 2.29
363 364 4.864916 ATGTCAAGATTCGTGCACATAC 57.135 40.909 18.64 4.98 0.00 2.39
364 365 2.666022 TGTCAAGATTCGTGCACATACG 59.334 45.455 18.64 2.38 44.98 3.06
371 372 3.538346 CGTGCACATACGAACGAAC 57.462 52.632 18.64 0.00 46.46 3.95
372 373 0.246222 CGTGCACATACGAACGAACG 60.246 55.000 18.64 0.00 46.46 3.95
373 374 0.515717 GTGCACATACGAACGAACGC 60.516 55.000 13.17 0.00 36.70 4.84
374 375 1.294938 GCACATACGAACGAACGCG 60.295 57.895 3.53 3.53 44.79 6.01
375 376 1.339134 CACATACGAACGAACGCGG 59.661 57.895 12.47 0.00 43.17 6.46
376 377 1.066656 CACATACGAACGAACGCGGA 61.067 55.000 12.47 0.00 43.17 5.54
377 378 0.179156 ACATACGAACGAACGCGGAT 60.179 50.000 12.47 0.00 43.17 4.18
378 379 0.497265 CATACGAACGAACGCGGATC 59.503 55.000 12.47 7.67 43.17 3.36
379 380 0.593263 ATACGAACGAACGCGGATCC 60.593 55.000 12.47 0.00 43.17 3.36
380 381 1.921045 TACGAACGAACGCGGATCCA 61.921 55.000 12.47 0.00 43.17 3.41
381 382 2.785105 CGAACGAACGCGGATCCAC 61.785 63.158 12.47 0.00 43.17 4.02
382 383 2.785105 GAACGAACGCGGATCCACG 61.785 63.158 20.32 20.32 43.17 4.94
418 419 2.696566 CACACGTGTGGGCTTAACA 58.303 52.632 35.65 0.00 42.10 2.41
419 420 1.234821 CACACGTGTGGGCTTAACAT 58.765 50.000 35.65 0.55 42.10 2.71
420 421 1.606668 CACACGTGTGGGCTTAACATT 59.393 47.619 35.65 0.33 42.10 2.71
421 422 2.034053 CACACGTGTGGGCTTAACATTT 59.966 45.455 35.65 0.00 42.10 2.32
422 423 2.691011 ACACGTGTGGGCTTAACATTTT 59.309 40.909 22.71 0.00 34.19 1.82
423 424 3.243267 ACACGTGTGGGCTTAACATTTTC 60.243 43.478 22.71 0.00 34.19 2.29
424 425 2.952978 ACGTGTGGGCTTAACATTTTCA 59.047 40.909 0.00 0.00 0.00 2.69
425 426 3.381908 ACGTGTGGGCTTAACATTTTCAA 59.618 39.130 0.00 0.00 0.00 2.69
426 427 4.142138 ACGTGTGGGCTTAACATTTTCAAA 60.142 37.500 0.00 0.00 0.00 2.69
427 428 4.806247 CGTGTGGGCTTAACATTTTCAAAA 59.194 37.500 0.00 0.00 0.00 2.44
428 429 5.292101 CGTGTGGGCTTAACATTTTCAAAAA 59.708 36.000 0.00 0.00 0.00 1.94
451 452 7.611821 AAACAATACAATGGTAAAAACGACG 57.388 32.000 0.00 0.00 32.19 5.12
452 453 6.303021 ACAATACAATGGTAAAAACGACGT 57.697 33.333 0.00 0.00 32.19 4.34
453 454 6.365050 ACAATACAATGGTAAAAACGACGTC 58.635 36.000 5.18 5.18 32.19 4.34
454 455 3.883631 ACAATGGTAAAAACGACGTCC 57.116 42.857 10.58 0.00 0.00 4.79
455 456 2.549329 ACAATGGTAAAAACGACGTCCC 59.451 45.455 10.58 3.80 0.00 4.46
456 457 1.431496 ATGGTAAAAACGACGTCCCG 58.569 50.000 10.58 1.95 0.00 5.14
457 458 0.599728 TGGTAAAAACGACGTCCCGG 60.600 55.000 10.58 0.00 0.00 5.73
458 459 0.599991 GGTAAAAACGACGTCCCGGT 60.600 55.000 10.58 0.00 0.00 5.28
459 460 1.217001 GTAAAAACGACGTCCCGGTT 58.783 50.000 10.58 5.72 41.76 4.44
460 461 4.538233 AAAACGACGTCCCGGTTT 57.462 50.000 10.58 11.73 43.65 3.27
461 462 2.779282 AAAACGACGTCCCGGTTTT 58.221 47.368 20.24 20.24 45.87 2.43
462 463 1.093972 AAAACGACGTCCCGGTTTTT 58.906 45.000 20.24 11.55 45.87 1.94
483 484 3.661758 TTTGAGACAAAAACGACGTCC 57.338 42.857 10.58 0.00 0.00 4.79
484 485 1.574134 TGAGACAAAAACGACGTCCC 58.426 50.000 10.58 0.00 0.00 4.46
485 486 1.134759 TGAGACAAAAACGACGTCCCA 60.135 47.619 10.58 0.00 0.00 4.37
486 487 1.525619 GAGACAAAAACGACGTCCCAG 59.474 52.381 10.58 0.00 0.00 4.45
487 488 1.134610 AGACAAAAACGACGTCCCAGT 60.135 47.619 10.58 0.00 0.00 4.00
488 489 1.667212 GACAAAAACGACGTCCCAGTT 59.333 47.619 10.58 5.72 0.00 3.16
489 490 2.086094 ACAAAAACGACGTCCCAGTTT 58.914 42.857 10.58 11.73 39.45 2.66
490 491 2.488937 ACAAAAACGACGTCCCAGTTTT 59.511 40.909 20.24 20.24 46.18 2.43
491 492 3.853831 AAAAACGACGTCCCAGTTTTT 57.146 38.095 26.23 26.23 46.65 1.94
715 716 4.643387 GTTGGCGCCACTGGGAGT 62.643 66.667 32.95 0.00 36.19 3.85
817 825 2.279252 CTCCCGCCACGTTATCGG 60.279 66.667 11.63 11.63 42.58 4.18
961 1022 2.752238 CACCGCTCCTCGACCTCT 60.752 66.667 0.00 0.00 41.67 3.69
1029 1097 3.661648 GGCAAGGGAGGCAAGGGA 61.662 66.667 0.00 0.00 0.00 4.20
1398 1499 1.272490 TGCCCTGTAGTTCGAACTGAG 59.728 52.381 35.24 28.29 40.07 3.35
1421 1522 3.059461 TCGTGGAACAAAGTTATTCGCAC 60.059 43.478 9.23 9.23 44.16 5.34
1471 1574 6.183360 CCAGTGAAATAACGTGTCTCTGATTC 60.183 42.308 16.25 4.35 35.77 2.52
1483 1598 1.659601 CTCTGATTCTGTTCTGCTGCG 59.340 52.381 0.00 0.00 0.00 5.18
1484 1599 0.096628 CTGATTCTGTTCTGCTGCGC 59.903 55.000 0.00 0.00 0.00 6.09
1563 1679 4.886579 AGTTGGATTGTTTTGCCATTCTC 58.113 39.130 0.00 0.00 0.00 2.87
1644 1762 4.155826 TCACCAACATCATTTGATCCGTTC 59.844 41.667 0.00 0.00 31.21 3.95
1744 1896 5.840243 TTGGGATTAGTCTGCATTTCATG 57.160 39.130 0.00 0.00 0.00 3.07
2124 3489 0.753262 AGAAGTGAACACCAGCGAGT 59.247 50.000 1.11 0.00 0.00 4.18
2145 3510 9.982291 GCGAGTAATGAAAAATGACAATAGTAA 57.018 29.630 0.00 0.00 0.00 2.24
2218 3584 5.251764 AGAACAGTTCAGATGAAGGAATGG 58.748 41.667 15.85 0.00 34.27 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.867113 GTGCACGTAAGCAGATGGCAAC 62.867 54.545 0.00 0.00 46.69 4.17
10 11 2.803937 GTGCACGTAAGCAGATGGCAA 61.804 52.381 0.00 0.00 46.69 4.52
11 12 1.298157 GTGCACGTAAGCAGATGGCA 61.298 55.000 0.00 0.00 46.69 4.92
12 13 1.298157 TGTGCACGTAAGCAGATGGC 61.298 55.000 13.13 0.00 46.69 4.40
13 14 0.443869 GTGTGCACGTAAGCAGATGG 59.556 55.000 13.13 0.00 46.69 3.51
14 15 1.432514 AGTGTGCACGTAAGCAGATG 58.567 50.000 13.13 0.00 46.69 2.90
15 16 2.417379 CCTAGTGTGCACGTAAGCAGAT 60.417 50.000 13.13 0.00 46.69 2.90
16 17 1.067846 CCTAGTGTGCACGTAAGCAGA 60.068 52.381 13.13 0.00 46.69 4.26
17 18 1.350193 CCTAGTGTGCACGTAAGCAG 58.650 55.000 13.13 3.27 46.69 4.24
18 19 0.669318 GCCTAGTGTGCACGTAAGCA 60.669 55.000 13.13 0.00 43.35 3.91
19 20 0.669318 TGCCTAGTGTGCACGTAAGC 60.669 55.000 13.13 11.88 45.62 3.09
20 21 1.336887 ACTGCCTAGTGTGCACGTAAG 60.337 52.381 13.13 8.65 38.73 2.34
21 22 0.677288 ACTGCCTAGTGTGCACGTAA 59.323 50.000 13.13 0.00 35.34 3.18
22 23 0.677288 AACTGCCTAGTGTGCACGTA 59.323 50.000 13.13 5.46 37.19 3.57
23 24 0.880278 CAACTGCCTAGTGTGCACGT 60.880 55.000 13.13 4.41 37.19 4.49
24 25 1.862123 CAACTGCCTAGTGTGCACG 59.138 57.895 13.13 0.00 37.19 5.34
25 26 1.576421 GCAACTGCCTAGTGTGCAC 59.424 57.895 10.75 10.75 39.05 4.57
26 27 4.063529 GCAACTGCCTAGTGTGCA 57.936 55.556 0.00 0.00 39.05 4.57
36 37 2.032071 AGGGTACACGGCAACTGC 59.968 61.111 0.00 0.00 41.14 4.40
37 38 2.325082 GCAGGGTACACGGCAACTG 61.325 63.158 15.80 0.00 0.00 3.16
38 39 2.032071 GCAGGGTACACGGCAACT 59.968 61.111 15.80 0.00 0.00 3.16
39 40 1.448922 TTTGCAGGGTACACGGCAAC 61.449 55.000 31.21 0.00 44.99 4.17
40 41 0.752009 TTTTGCAGGGTACACGGCAA 60.752 50.000 28.38 28.38 43.79 4.52
41 42 1.152943 TTTTGCAGGGTACACGGCA 60.153 52.632 19.44 19.44 0.00 5.69
42 43 1.284715 GTTTTGCAGGGTACACGGC 59.715 57.895 13.80 13.80 0.00 5.68
43 44 0.309612 GTGTTTTGCAGGGTACACGG 59.690 55.000 0.00 0.00 32.56 4.94
44 45 1.018148 TGTGTTTTGCAGGGTACACG 58.982 50.000 14.02 0.00 42.81 4.49
45 46 2.288152 CCATGTGTTTTGCAGGGTACAC 60.288 50.000 12.80 12.80 40.87 2.90
46 47 1.959985 CCATGTGTTTTGCAGGGTACA 59.040 47.619 0.00 0.00 33.58 2.90
47 48 1.336795 GCCATGTGTTTTGCAGGGTAC 60.337 52.381 0.00 0.00 39.69 3.34
48 49 0.965439 GCCATGTGTTTTGCAGGGTA 59.035 50.000 0.00 0.00 39.69 3.69
49 50 1.047596 TGCCATGTGTTTTGCAGGGT 61.048 50.000 0.00 0.00 39.69 4.34
50 51 0.106335 TTGCCATGTGTTTTGCAGGG 59.894 50.000 0.00 0.00 40.40 4.45
51 52 1.202557 AGTTGCCATGTGTTTTGCAGG 60.203 47.619 0.00 0.00 34.81 4.85
52 53 2.129607 GAGTTGCCATGTGTTTTGCAG 58.870 47.619 0.00 0.00 34.81 4.41
53 54 1.535649 CGAGTTGCCATGTGTTTTGCA 60.536 47.619 0.00 0.00 0.00 4.08
54 55 1.130955 CGAGTTGCCATGTGTTTTGC 58.869 50.000 0.00 0.00 0.00 3.68
55 56 1.336440 TCCGAGTTGCCATGTGTTTTG 59.664 47.619 0.00 0.00 0.00 2.44
56 57 1.686355 TCCGAGTTGCCATGTGTTTT 58.314 45.000 0.00 0.00 0.00 2.43
57 58 1.909700 ATCCGAGTTGCCATGTGTTT 58.090 45.000 0.00 0.00 0.00 2.83
58 59 2.779755 TATCCGAGTTGCCATGTGTT 57.220 45.000 0.00 0.00 0.00 3.32
59 60 2.779755 TTATCCGAGTTGCCATGTGT 57.220 45.000 0.00 0.00 0.00 3.72
60 61 4.433186 TTTTTATCCGAGTTGCCATGTG 57.567 40.909 0.00 0.00 0.00 3.21
78 79 3.903467 AGAAGGTGGCAACTCTCTTTTT 58.097 40.909 5.03 0.00 37.61 1.94
79 80 3.584733 AGAAGGTGGCAACTCTCTTTT 57.415 42.857 5.03 0.00 37.61 2.27
80 81 3.584733 AAGAAGGTGGCAACTCTCTTT 57.415 42.857 18.24 0.00 37.61 2.52
81 82 4.917906 ATAAGAAGGTGGCAACTCTCTT 57.082 40.909 23.65 23.65 34.06 2.85
82 83 6.374417 TTTATAAGAAGGTGGCAACTCTCT 57.626 37.500 5.03 8.46 37.61 3.10
83 84 5.065346 GCTTTATAAGAAGGTGGCAACTCTC 59.935 44.000 5.03 6.06 37.61 3.20
84 85 4.944317 GCTTTATAAGAAGGTGGCAACTCT 59.056 41.667 5.03 1.64 37.61 3.24
85 86 4.700213 TGCTTTATAAGAAGGTGGCAACTC 59.300 41.667 5.03 0.00 37.61 3.01
86 87 4.459337 GTGCTTTATAAGAAGGTGGCAACT 59.541 41.667 0.00 0.00 37.61 3.16
87 88 4.217550 TGTGCTTTATAAGAAGGTGGCAAC 59.782 41.667 0.00 0.00 0.00 4.17
88 89 4.217550 GTGTGCTTTATAAGAAGGTGGCAA 59.782 41.667 0.00 0.00 0.00 4.52
89 90 3.756434 GTGTGCTTTATAAGAAGGTGGCA 59.244 43.478 0.00 0.00 0.00 4.92
90 91 4.010349 AGTGTGCTTTATAAGAAGGTGGC 58.990 43.478 0.00 0.00 0.00 5.01
91 92 5.817816 CCTAGTGTGCTTTATAAGAAGGTGG 59.182 44.000 0.00 0.00 0.00 4.61
92 93 5.817816 CCCTAGTGTGCTTTATAAGAAGGTG 59.182 44.000 0.00 0.00 0.00 4.00
93 94 5.104485 CCCCTAGTGTGCTTTATAAGAAGGT 60.104 44.000 0.00 0.00 0.00 3.50
94 95 5.368989 CCCCTAGTGTGCTTTATAAGAAGG 58.631 45.833 0.00 0.00 0.00 3.46
95 96 4.816925 GCCCCTAGTGTGCTTTATAAGAAG 59.183 45.833 0.00 0.00 0.00 2.85
96 97 4.226394 TGCCCCTAGTGTGCTTTATAAGAA 59.774 41.667 0.00 0.00 0.00 2.52
97 98 3.778075 TGCCCCTAGTGTGCTTTATAAGA 59.222 43.478 0.00 0.00 0.00 2.10
98 99 4.130118 CTGCCCCTAGTGTGCTTTATAAG 58.870 47.826 0.00 0.00 0.00 1.73
99 100 3.521937 ACTGCCCCTAGTGTGCTTTATAA 59.478 43.478 0.00 0.00 0.00 0.98
100 101 3.112263 ACTGCCCCTAGTGTGCTTTATA 58.888 45.455 0.00 0.00 0.00 0.98
101 102 1.916181 ACTGCCCCTAGTGTGCTTTAT 59.084 47.619 0.00 0.00 0.00 1.40
102 103 1.358152 ACTGCCCCTAGTGTGCTTTA 58.642 50.000 0.00 0.00 0.00 1.85
103 104 0.478507 AACTGCCCCTAGTGTGCTTT 59.521 50.000 0.00 0.00 0.00 3.51
104 105 0.250901 CAACTGCCCCTAGTGTGCTT 60.251 55.000 0.00 0.00 0.00 3.91
105 106 1.376466 CAACTGCCCCTAGTGTGCT 59.624 57.895 0.00 0.00 0.00 4.40
106 107 2.335712 GCAACTGCCCCTAGTGTGC 61.336 63.158 0.00 0.00 34.31 4.57
107 108 3.987404 GCAACTGCCCCTAGTGTG 58.013 61.111 0.00 0.00 34.31 3.82
123 124 0.530211 TGTTTTGCAGTGCACATGGC 60.530 50.000 19.58 19.16 38.71 4.40
124 125 1.210870 GTGTTTTGCAGTGCACATGG 58.789 50.000 19.58 9.23 38.71 3.66
125 126 1.923899 TGTGTTTTGCAGTGCACATG 58.076 45.000 19.58 14.99 38.71 3.21
126 127 2.894763 ATGTGTTTTGCAGTGCACAT 57.105 40.000 19.58 14.62 44.64 3.21
127 128 1.471153 CCATGTGTTTTGCAGTGCACA 60.471 47.619 19.58 12.76 44.43 4.57
128 129 1.210870 CCATGTGTTTTGCAGTGCAC 58.789 50.000 19.58 9.40 38.71 4.57
129 130 0.530211 GCCATGTGTTTTGCAGTGCA 60.530 50.000 15.37 15.37 36.47 4.57
130 131 0.530211 TGCCATGTGTTTTGCAGTGC 60.530 50.000 8.58 8.58 0.00 4.40
131 132 1.593933 GTTGCCATGTGTTTTGCAGTG 59.406 47.619 0.00 0.00 34.81 3.66
132 133 1.481772 AGTTGCCATGTGTTTTGCAGT 59.518 42.857 0.00 0.00 34.81 4.40
133 134 2.228138 AGTTGCCATGTGTTTTGCAG 57.772 45.000 0.00 0.00 34.81 4.41
134 135 2.545532 GCTAGTTGCCATGTGTTTTGCA 60.546 45.455 0.00 0.00 35.15 4.08
135 136 2.061028 GCTAGTTGCCATGTGTTTTGC 58.939 47.619 0.00 0.00 35.15 3.68
136 137 3.311106 CTGCTAGTTGCCATGTGTTTTG 58.689 45.455 0.00 0.00 42.00 2.44
137 138 2.288395 GCTGCTAGTTGCCATGTGTTTT 60.288 45.455 0.00 0.00 42.00 2.43
138 139 1.270550 GCTGCTAGTTGCCATGTGTTT 59.729 47.619 0.00 0.00 42.00 2.83
139 140 0.883833 GCTGCTAGTTGCCATGTGTT 59.116 50.000 0.00 0.00 42.00 3.32
140 141 0.037303 AGCTGCTAGTTGCCATGTGT 59.963 50.000 0.00 0.00 42.00 3.72
141 142 1.135489 CAAGCTGCTAGTTGCCATGTG 60.135 52.381 0.90 0.00 42.00 3.21
142 143 1.171308 CAAGCTGCTAGTTGCCATGT 58.829 50.000 0.90 0.00 42.00 3.21
143 144 0.454600 CCAAGCTGCTAGTTGCCATG 59.545 55.000 0.90 0.00 42.00 3.66
144 145 0.682209 CCCAAGCTGCTAGTTGCCAT 60.682 55.000 0.90 0.00 42.00 4.40
145 146 1.303561 CCCAAGCTGCTAGTTGCCA 60.304 57.895 0.90 0.00 42.00 4.92
146 147 1.303643 ACCCAAGCTGCTAGTTGCC 60.304 57.895 0.90 0.00 42.00 4.52
147 148 0.890996 ACACCCAAGCTGCTAGTTGC 60.891 55.000 0.90 0.00 43.25 4.17
148 149 0.877071 CACACCCAAGCTGCTAGTTG 59.123 55.000 0.90 0.00 0.00 3.16
149 150 0.250901 CCACACCCAAGCTGCTAGTT 60.251 55.000 0.90 0.00 0.00 2.24
150 151 1.376466 CCACACCCAAGCTGCTAGT 59.624 57.895 0.90 0.00 0.00 2.57
151 152 1.377725 CCCACACCCAAGCTGCTAG 60.378 63.158 0.90 0.00 0.00 3.42
152 153 1.841302 CTCCCACACCCAAGCTGCTA 61.841 60.000 0.90 0.00 0.00 3.49
153 154 3.177884 TCCCACACCCAAGCTGCT 61.178 61.111 0.00 0.00 0.00 4.24
154 155 2.674380 CTCCCACACCCAAGCTGC 60.674 66.667 0.00 0.00 0.00 5.25
155 156 1.002868 CTCTCCCACACCCAAGCTG 60.003 63.158 0.00 0.00 0.00 4.24
156 157 2.227036 CCTCTCCCACACCCAAGCT 61.227 63.158 0.00 0.00 0.00 3.74
157 158 2.190488 CTCCTCTCCCACACCCAAGC 62.190 65.000 0.00 0.00 0.00 4.01
158 159 0.545309 TCTCCTCTCCCACACCCAAG 60.545 60.000 0.00 0.00 0.00 3.61
159 160 0.836400 GTCTCCTCTCCCACACCCAA 60.836 60.000 0.00 0.00 0.00 4.12
160 161 1.229209 GTCTCCTCTCCCACACCCA 60.229 63.158 0.00 0.00 0.00 4.51
161 162 2.352032 CGTCTCCTCTCCCACACCC 61.352 68.421 0.00 0.00 0.00 4.61
162 163 1.606889 ACGTCTCCTCTCCCACACC 60.607 63.158 0.00 0.00 0.00 4.16
163 164 1.587054 CACGTCTCCTCTCCCACAC 59.413 63.158 0.00 0.00 0.00 3.82
164 165 2.276116 GCACGTCTCCTCTCCCACA 61.276 63.158 0.00 0.00 0.00 4.17
165 166 2.276116 TGCACGTCTCCTCTCCCAC 61.276 63.158 0.00 0.00 0.00 4.61
166 167 2.117423 TGCACGTCTCCTCTCCCA 59.883 61.111 0.00 0.00 0.00 4.37
167 168 2.574399 GTGCACGTCTCCTCTCCC 59.426 66.667 0.00 0.00 0.00 4.30
168 169 2.179517 CGTGCACGTCTCCTCTCC 59.820 66.667 30.50 0.00 34.11 3.71
178 179 2.102357 ATCTCGCCTACGTGCACG 59.898 61.111 35.99 35.99 46.33 5.34
179 180 1.878522 CCATCTCGCCTACGTGCAC 60.879 63.158 6.82 6.82 41.18 4.57
180 181 2.494445 CCATCTCGCCTACGTGCA 59.506 61.111 0.00 0.00 41.18 4.57
181 182 2.962253 GCCATCTCGCCTACGTGC 60.962 66.667 0.00 0.00 41.18 5.34
182 183 0.739462 TTTGCCATCTCGCCTACGTG 60.739 55.000 0.00 0.00 41.18 4.49
183 184 0.178068 ATTTGCCATCTCGCCTACGT 59.822 50.000 0.00 0.00 41.18 3.57
184 185 0.583438 CATTTGCCATCTCGCCTACG 59.417 55.000 0.00 0.00 42.01 3.51
185 186 0.308993 GCATTTGCCATCTCGCCTAC 59.691 55.000 0.00 0.00 34.31 3.18
186 187 2.706636 GCATTTGCCATCTCGCCTA 58.293 52.632 0.00 0.00 34.31 3.93
187 188 3.518003 GCATTTGCCATCTCGCCT 58.482 55.556 0.00 0.00 34.31 5.52
197 198 0.109132 GCTAGTGTGTGGGCATTTGC 60.109 55.000 0.00 0.00 41.14 3.68
198 199 1.068333 GTGCTAGTGTGTGGGCATTTG 60.068 52.381 0.00 0.00 37.05 2.32
199 200 1.202927 AGTGCTAGTGTGTGGGCATTT 60.203 47.619 0.00 0.00 37.05 2.32
200 201 0.401738 AGTGCTAGTGTGTGGGCATT 59.598 50.000 0.00 0.00 37.05 3.56
201 202 0.401738 AAGTGCTAGTGTGTGGGCAT 59.598 50.000 0.00 0.00 37.05 4.40
202 203 0.534877 CAAGTGCTAGTGTGTGGGCA 60.535 55.000 0.00 0.00 0.00 5.36
203 204 0.535102 ACAAGTGCTAGTGTGTGGGC 60.535 55.000 0.00 0.00 0.00 5.36
204 205 1.229428 CACAAGTGCTAGTGTGTGGG 58.771 55.000 3.62 0.00 40.22 4.61
232 233 0.388520 TGGTCGAGATGCAGTTCGTG 60.389 55.000 18.47 0.25 37.99 4.35
233 234 0.388649 GTGGTCGAGATGCAGTTCGT 60.389 55.000 18.47 0.00 37.99 3.85
234 235 0.388520 TGTGGTCGAGATGCAGTTCG 60.389 55.000 14.48 14.48 38.13 3.95
235 236 2.015736 ATGTGGTCGAGATGCAGTTC 57.984 50.000 0.00 0.00 0.00 3.01
236 237 2.418746 GGTATGTGGTCGAGATGCAGTT 60.419 50.000 0.00 0.00 0.00 3.16
237 238 1.137086 GGTATGTGGTCGAGATGCAGT 59.863 52.381 0.00 0.00 0.00 4.40
238 239 1.136891 TGGTATGTGGTCGAGATGCAG 59.863 52.381 0.00 0.00 0.00 4.41
239 240 1.136891 CTGGTATGTGGTCGAGATGCA 59.863 52.381 0.00 0.00 0.00 3.96
240 241 1.858091 CTGGTATGTGGTCGAGATGC 58.142 55.000 0.00 0.00 0.00 3.91
241 242 1.539065 GGCTGGTATGTGGTCGAGATG 60.539 57.143 0.00 0.00 0.00 2.90
242 243 0.753262 GGCTGGTATGTGGTCGAGAT 59.247 55.000 0.00 0.00 0.00 2.75
243 244 1.327690 GGGCTGGTATGTGGTCGAGA 61.328 60.000 0.00 0.00 0.00 4.04
244 245 1.144057 GGGCTGGTATGTGGTCGAG 59.856 63.158 0.00 0.00 0.00 4.04
245 246 2.363975 GGGGCTGGTATGTGGTCGA 61.364 63.158 0.00 0.00 0.00 4.20
246 247 2.189521 GGGGCTGGTATGTGGTCG 59.810 66.667 0.00 0.00 0.00 4.79
247 248 1.527370 GAGGGGCTGGTATGTGGTC 59.473 63.158 0.00 0.00 0.00 4.02
248 249 2.001269 GGAGGGGCTGGTATGTGGT 61.001 63.158 0.00 0.00 0.00 4.16
249 250 1.694169 AGGAGGGGCTGGTATGTGG 60.694 63.158 0.00 0.00 0.00 4.17
250 251 1.274703 ACAGGAGGGGCTGGTATGTG 61.275 60.000 0.00 0.00 0.00 3.21
251 252 1.082954 ACAGGAGGGGCTGGTATGT 59.917 57.895 0.00 0.00 0.00 2.29
252 253 1.274703 ACACAGGAGGGGCTGGTATG 61.275 60.000 0.00 0.00 0.00 2.39
253 254 1.082954 ACACAGGAGGGGCTGGTAT 59.917 57.895 0.00 0.00 0.00 2.73
254 255 1.918293 CACACAGGAGGGGCTGGTA 60.918 63.158 0.00 0.00 0.00 3.25
255 256 3.252284 CACACAGGAGGGGCTGGT 61.252 66.667 0.00 0.00 0.00 4.00
256 257 4.039092 CCACACAGGAGGGGCTGG 62.039 72.222 0.00 0.00 41.22 4.85
257 258 3.252284 ACCACACAGGAGGGGCTG 61.252 66.667 0.00 0.00 41.22 4.85
258 259 2.930562 GACCACACAGGAGGGGCT 60.931 66.667 0.00 0.00 41.22 5.19
259 260 2.351924 TTTGACCACACAGGAGGGGC 62.352 60.000 0.00 0.00 41.22 5.80
260 261 0.537371 GTTTGACCACACAGGAGGGG 60.537 60.000 0.00 0.00 41.22 4.79
261 262 0.884704 CGTTTGACCACACAGGAGGG 60.885 60.000 0.00 0.00 41.22 4.30
262 263 0.884704 CCGTTTGACCACACAGGAGG 60.885 60.000 0.00 0.00 41.22 4.30
263 264 1.507141 GCCGTTTGACCACACAGGAG 61.507 60.000 0.00 0.00 41.22 3.69
264 265 1.525077 GCCGTTTGACCACACAGGA 60.525 57.895 0.00 0.00 41.22 3.86
265 266 2.551912 GGCCGTTTGACCACACAGG 61.552 63.158 0.00 0.00 45.67 4.00
266 267 2.892334 CGGCCGTTTGACCACACAG 61.892 63.158 19.50 0.00 0.00 3.66
267 268 2.897846 CGGCCGTTTGACCACACA 60.898 61.111 19.50 0.00 0.00 3.72
268 269 2.898343 ACGGCCGTTTGACCACAC 60.898 61.111 28.70 0.00 0.00 3.82
269 270 2.897846 CACGGCCGTTTGACCACA 60.898 61.111 32.11 0.00 0.00 4.17
270 271 2.898343 ACACGGCCGTTTGACCAC 60.898 61.111 32.11 0.00 0.00 4.16
271 272 2.897846 CACACGGCCGTTTGACCA 60.898 61.111 35.20 0.00 0.00 4.02
272 273 3.656045 CCACACGGCCGTTTGACC 61.656 66.667 38.76 0.00 0.00 4.02
273 274 3.656045 CCCACACGGCCGTTTGAC 61.656 66.667 38.76 0.00 0.00 3.18
284 285 3.599285 TTCATCCGGTCGCCCACAC 62.599 63.158 0.00 0.00 0.00 3.82
285 286 3.315140 TTCATCCGGTCGCCCACA 61.315 61.111 0.00 0.00 0.00 4.17
286 287 2.818274 GTTCATCCGGTCGCCCAC 60.818 66.667 0.00 0.00 0.00 4.61
287 288 4.444838 CGTTCATCCGGTCGCCCA 62.445 66.667 0.00 0.00 0.00 5.36
291 292 4.444838 TGGGCGTTCATCCGGTCG 62.445 66.667 0.00 1.40 0.00 4.79
292 293 2.818274 GTGGGCGTTCATCCGGTC 60.818 66.667 0.00 0.00 0.00 4.79
293 294 3.632080 TGTGGGCGTTCATCCGGT 61.632 61.111 0.00 0.00 0.00 5.28
294 295 3.124921 GTGTGGGCGTTCATCCGG 61.125 66.667 0.00 0.00 0.00 5.14
295 296 2.358125 TGTGTGGGCGTTCATCCG 60.358 61.111 0.00 0.00 0.00 4.18
296 297 0.036765 TAGTGTGTGGGCGTTCATCC 60.037 55.000 0.00 0.00 0.00 3.51
297 298 1.359848 CTAGTGTGTGGGCGTTCATC 58.640 55.000 0.00 0.00 0.00 2.92
298 299 0.036388 CCTAGTGTGTGGGCGTTCAT 60.036 55.000 0.00 0.00 0.00 2.57
299 300 1.369692 CCTAGTGTGTGGGCGTTCA 59.630 57.895 0.00 0.00 0.00 3.18
300 301 2.033194 GCCTAGTGTGTGGGCGTTC 61.033 63.158 0.00 0.00 44.00 3.95
301 302 2.032071 GCCTAGTGTGTGGGCGTT 59.968 61.111 0.00 0.00 44.00 4.84
305 306 1.296715 GACTGGCCTAGTGTGTGGG 59.703 63.158 11.89 0.00 40.53 4.61
306 307 1.296715 GGACTGGCCTAGTGTGTGG 59.703 63.158 11.89 0.00 40.53 4.17
318 319 0.744414 CCAATGCCACGTAGGACTGG 60.744 60.000 8.04 0.00 41.22 4.00
319 320 0.249120 TCCAATGCCACGTAGGACTG 59.751 55.000 8.04 0.00 41.22 3.51
320 321 0.981183 TTCCAATGCCACGTAGGACT 59.019 50.000 8.04 0.00 41.22 3.85
321 322 1.816074 TTTCCAATGCCACGTAGGAC 58.184 50.000 8.04 1.29 41.22 3.85
322 323 2.799126 ATTTCCAATGCCACGTAGGA 57.201 45.000 8.04 0.00 41.22 2.94
323 324 3.882888 ACATATTTCCAATGCCACGTAGG 59.117 43.478 0.00 0.00 41.84 3.18
324 325 4.574421 TGACATATTTCCAATGCCACGTAG 59.426 41.667 0.00 0.00 0.00 3.51
325 326 4.518249 TGACATATTTCCAATGCCACGTA 58.482 39.130 0.00 0.00 0.00 3.57
326 327 3.351740 TGACATATTTCCAATGCCACGT 58.648 40.909 0.00 0.00 0.00 4.49
327 328 4.096231 TCTTGACATATTTCCAATGCCACG 59.904 41.667 0.00 0.00 0.00 4.94
328 329 5.581126 TCTTGACATATTTCCAATGCCAC 57.419 39.130 0.00 0.00 0.00 5.01
329 330 6.459985 CGAATCTTGACATATTTCCAATGCCA 60.460 38.462 0.00 0.00 0.00 4.92
330 331 5.916883 CGAATCTTGACATATTTCCAATGCC 59.083 40.000 0.00 0.00 0.00 4.40
331 332 6.415867 CACGAATCTTGACATATTTCCAATGC 59.584 38.462 0.00 0.00 0.00 3.56
332 333 6.415867 GCACGAATCTTGACATATTTCCAATG 59.584 38.462 0.00 0.00 0.00 2.82
333 334 6.095300 TGCACGAATCTTGACATATTTCCAAT 59.905 34.615 0.00 0.00 0.00 3.16
334 335 5.414144 TGCACGAATCTTGACATATTTCCAA 59.586 36.000 0.00 0.00 0.00 3.53
335 336 4.940654 TGCACGAATCTTGACATATTTCCA 59.059 37.500 0.00 0.00 0.00 3.53
336 337 5.163764 TGTGCACGAATCTTGACATATTTCC 60.164 40.000 13.13 0.00 0.00 3.13
337 338 5.868257 TGTGCACGAATCTTGACATATTTC 58.132 37.500 13.13 0.00 0.00 2.17
338 339 5.878332 TGTGCACGAATCTTGACATATTT 57.122 34.783 13.13 0.00 0.00 1.40
339 340 6.292328 CGTATGTGCACGAATCTTGACATATT 60.292 38.462 13.13 0.00 44.69 1.28
340 341 5.175673 CGTATGTGCACGAATCTTGACATAT 59.824 40.000 13.13 0.00 44.69 1.78
341 342 4.502645 CGTATGTGCACGAATCTTGACATA 59.497 41.667 13.13 0.00 44.69 2.29
342 343 3.306973 CGTATGTGCACGAATCTTGACAT 59.693 43.478 13.13 0.00 44.69 3.06
343 344 2.666022 CGTATGTGCACGAATCTTGACA 59.334 45.455 13.13 0.00 44.69 3.58
344 345 3.289702 CGTATGTGCACGAATCTTGAC 57.710 47.619 13.13 0.27 44.69 3.18
353 354 0.246222 CGTTCGTTCGTATGTGCACG 60.246 55.000 13.13 0.00 43.28 5.34
354 355 0.515717 GCGTTCGTTCGTATGTGCAC 60.516 55.000 10.75 10.75 0.00 4.57
355 356 1.776580 GCGTTCGTTCGTATGTGCA 59.223 52.632 0.00 0.00 0.00 4.57
356 357 1.294938 CGCGTTCGTTCGTATGTGC 60.295 57.895 0.00 0.00 0.00 4.57
357 358 1.066656 TCCGCGTTCGTTCGTATGTG 61.067 55.000 4.92 0.00 0.00 3.21
358 359 0.179156 ATCCGCGTTCGTTCGTATGT 60.179 50.000 4.92 0.00 0.00 2.29
359 360 0.497265 GATCCGCGTTCGTTCGTATG 59.503 55.000 4.92 0.00 0.00 2.39
360 361 0.593263 GGATCCGCGTTCGTTCGTAT 60.593 55.000 4.92 0.00 0.00 3.06
361 362 1.226379 GGATCCGCGTTCGTTCGTA 60.226 57.895 4.92 0.00 0.00 3.43
362 363 2.505557 GGATCCGCGTTCGTTCGT 60.506 61.111 4.92 0.00 0.00 3.85
363 364 2.505337 TGGATCCGCGTTCGTTCG 60.505 61.111 7.39 0.00 0.00 3.95
364 365 2.785105 CGTGGATCCGCGTTCGTTC 61.785 63.158 34.27 4.08 43.86 3.95
365 366 2.807895 CGTGGATCCGCGTTCGTT 60.808 61.111 34.27 0.00 43.86 3.85
391 392 4.640855 ACACGTGTGGGCGTCTCG 62.641 66.667 22.71 0.00 43.83 4.04
392 393 3.036084 CACACGTGTGGGCGTCTC 61.036 66.667 35.65 0.00 43.83 3.36
400 401 1.234821 ATGTTAAGCCCACACGTGTG 58.765 50.000 36.13 36.13 45.23 3.82
401 402 1.975660 AATGTTAAGCCCACACGTGT 58.024 45.000 17.22 17.22 0.00 4.49
402 403 3.243234 TGAAAATGTTAAGCCCACACGTG 60.243 43.478 15.48 15.48 0.00 4.49
403 404 2.952978 TGAAAATGTTAAGCCCACACGT 59.047 40.909 0.00 0.00 0.00 4.49
404 405 3.634568 TGAAAATGTTAAGCCCACACG 57.365 42.857 0.00 0.00 0.00 4.49
405 406 6.670077 TTTTTGAAAATGTTAAGCCCACAC 57.330 33.333 0.00 0.00 0.00 3.82
425 426 8.533153 CGTCGTTTTTACCATTGTATTGTTTTT 58.467 29.630 0.00 0.00 0.00 1.94
426 427 7.701501 ACGTCGTTTTTACCATTGTATTGTTTT 59.298 29.630 0.00 0.00 0.00 2.43
427 428 7.194962 ACGTCGTTTTTACCATTGTATTGTTT 58.805 30.769 0.00 0.00 0.00 2.83
428 429 6.727215 ACGTCGTTTTTACCATTGTATTGTT 58.273 32.000 0.00 0.00 0.00 2.83
429 430 6.303021 ACGTCGTTTTTACCATTGTATTGT 57.697 33.333 0.00 0.00 0.00 2.71
430 431 5.791480 GGACGTCGTTTTTACCATTGTATTG 59.209 40.000 9.92 0.00 0.00 1.90
431 432 5.106594 GGGACGTCGTTTTTACCATTGTATT 60.107 40.000 9.92 0.00 0.00 1.89
432 433 4.392754 GGGACGTCGTTTTTACCATTGTAT 59.607 41.667 9.92 0.00 0.00 2.29
433 434 3.745458 GGGACGTCGTTTTTACCATTGTA 59.255 43.478 9.92 0.00 0.00 2.41
434 435 2.549329 GGGACGTCGTTTTTACCATTGT 59.451 45.455 9.92 0.00 0.00 2.71
435 436 3.191735 GGGACGTCGTTTTTACCATTG 57.808 47.619 9.92 0.00 0.00 2.82
461 462 4.405196 GGACGTCGTTTTTGTCTCAAAAA 58.595 39.130 9.92 13.87 33.21 1.94
462 463 3.181508 GGGACGTCGTTTTTGTCTCAAAA 60.182 43.478 9.92 3.93 33.27 2.44
463 464 2.352342 GGGACGTCGTTTTTGTCTCAAA 59.648 45.455 9.92 0.00 33.27 2.69
464 465 1.935199 GGGACGTCGTTTTTGTCTCAA 59.065 47.619 9.92 0.00 33.27 3.02
465 466 1.134759 TGGGACGTCGTTTTTGTCTCA 60.135 47.619 9.92 0.00 40.63 3.27
466 467 1.525619 CTGGGACGTCGTTTTTGTCTC 59.474 52.381 9.92 0.00 33.66 3.36
467 468 1.134610 ACTGGGACGTCGTTTTTGTCT 60.135 47.619 9.92 0.00 33.21 3.41
468 469 1.292992 ACTGGGACGTCGTTTTTGTC 58.707 50.000 9.92 0.00 0.00 3.18
469 470 1.741528 AACTGGGACGTCGTTTTTGT 58.258 45.000 9.92 0.00 0.00 2.83
470 471 2.836479 AAACTGGGACGTCGTTTTTG 57.164 45.000 9.92 0.00 0.00 2.44
471 472 3.853831 AAAAACTGGGACGTCGTTTTT 57.146 38.095 26.23 26.23 42.61 1.94
698 699 3.248446 TACTCCCAGTGGCGCCAAC 62.248 63.158 34.66 24.65 0.00 3.77
699 700 2.925706 TACTCCCAGTGGCGCCAA 60.926 61.111 34.66 15.13 0.00 4.52
700 701 3.702048 GTACTCCCAGTGGCGCCA 61.702 66.667 29.03 29.03 0.00 5.69
701 702 4.814294 CGTACTCCCAGTGGCGCC 62.814 72.222 22.73 22.73 0.00 6.53
702 703 2.775032 TTTCGTACTCCCAGTGGCGC 62.775 60.000 2.61 0.00 31.45 6.53
703 704 0.320073 TTTTCGTACTCCCAGTGGCG 60.320 55.000 2.61 1.17 32.21 5.69
704 705 1.154197 GTTTTCGTACTCCCAGTGGC 58.846 55.000 2.61 0.00 0.00 5.01
705 706 2.536761 TGTTTTCGTACTCCCAGTGG 57.463 50.000 0.63 0.63 0.00 4.00
706 707 2.666508 CGATGTTTTCGTACTCCCAGTG 59.333 50.000 0.00 0.00 43.01 3.66
707 708 2.955614 CGATGTTTTCGTACTCCCAGT 58.044 47.619 0.00 0.00 43.01 4.00
839 848 1.291184 TGCACGGTTGAGATTGCGAG 61.291 55.000 0.00 0.00 37.82 5.03
1348 1423 3.898529 ACTACACAAGTCGCTGTTCTAC 58.101 45.455 0.00 0.00 30.33 2.59
1398 1499 3.059461 TGCGAATAACTTTGTTCCACGAC 60.059 43.478 0.00 0.00 0.00 4.34
1421 1522 1.608590 AGTTCCATTTCCAGCAACACG 59.391 47.619 0.00 0.00 0.00 4.49
1483 1598 7.145932 AGAACAAACATACATTAACAGAGGC 57.854 36.000 0.00 0.00 0.00 4.70
1484 1599 9.612620 GAAAGAACAAACATACATTAACAGAGG 57.387 33.333 0.00 0.00 0.00 3.69
1644 1762 5.707242 AATGCATCAGATCAAATAGCAGG 57.293 39.130 0.00 0.00 33.69 4.85
1744 1896 4.217497 GCAATCAATCTAGAAAGCGATGC 58.783 43.478 0.00 0.29 0.00 3.91
1745 1897 4.274214 TGGCAATCAATCTAGAAAGCGATG 59.726 41.667 0.00 0.00 0.00 3.84
1746 1898 4.454678 TGGCAATCAATCTAGAAAGCGAT 58.545 39.130 0.00 0.00 0.00 4.58
1747 1899 3.872696 TGGCAATCAATCTAGAAAGCGA 58.127 40.909 0.00 0.00 0.00 4.93
1750 1902 4.340097 TGGCATGGCAATCAATCTAGAAAG 59.660 41.667 21.13 0.00 0.00 2.62
2145 3510 2.527497 TGACCCAACACAATGCATCAT 58.473 42.857 0.00 0.00 0.00 2.45
2156 3522 5.105567 TCTACAAGAAACTTGACCCAACA 57.894 39.130 16.65 0.00 0.00 3.33
2218 3584 7.454260 AAAATGTCTTCCAAGGACAGAATAC 57.546 36.000 0.00 0.00 45.14 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.