Multiple sequence alignment - TraesCS1B01G096300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G096300 chr1B 100.000 3121 0 0 1 3121 100421298 100424418 0.000000e+00 5764.0
1 TraesCS1B01G096300 chr1B 83.929 1120 157 18 1022 2128 100631049 100632158 0.000000e+00 1050.0
2 TraesCS1B01G096300 chr1B 82.901 1117 168 18 1023 2128 101142998 101144102 0.000000e+00 983.0
3 TraesCS1B01G096300 chr1B 82.677 254 38 3 998 1248 100541431 100541681 1.460000e-53 220.0
4 TraesCS1B01G096300 chr1D 92.564 2636 133 23 130 2749 62888991 62891579 0.000000e+00 3723.0
5 TraesCS1B01G096300 chr1D 84.007 1113 159 15 1023 2128 63357075 63358175 0.000000e+00 1051.0
6 TraesCS1B01G096300 chr1D 83.219 1162 159 25 998 2128 62935739 62936895 0.000000e+00 1033.0
7 TraesCS1B01G096300 chr1D 96.316 190 7 0 2932 3121 62891571 62891760 2.340000e-81 313.0
8 TraesCS1B01G096300 chr1D 88.136 59 5 2 1187 1244 413061847 413061904 5.590000e-08 69.4
9 TraesCS1B01G096300 chr1A 91.053 1956 145 17 183 2130 61008266 61010199 0.000000e+00 2615.0
10 TraesCS1B01G096300 chr1A 82.384 1141 182 12 994 2128 61341159 61342286 0.000000e+00 976.0
11 TraesCS1B01G096300 chr1A 84.693 797 122 0 1325 2121 62254236 62253440 0.000000e+00 797.0
12 TraesCS1B01G096300 chr1A 83.871 837 131 3 1295 2128 61284467 61285302 0.000000e+00 795.0
13 TraesCS1B01G096300 chr1A 85.246 244 31 2 2196 2439 61010238 61010476 2.400000e-61 246.0
14 TraesCS1B01G096300 chr1A 85.153 229 31 1 1023 1248 62254694 62254466 6.730000e-57 231.0
15 TraesCS1B01G096300 chr1A 83.043 230 36 1 1022 1248 61032295 61032524 4.080000e-49 206.0
16 TraesCS1B01G096300 chr1A 83.491 212 26 5 2225 2430 61011302 61011510 4.110000e-44 189.0
17 TraesCS1B01G096300 chr1A 80.077 261 43 6 993 1248 61284131 61284387 5.320000e-43 185.0
18 TraesCS1B01G096300 chr7D 93.902 164 9 1 2760 2923 82851274 82851436 2.400000e-61 246.0
19 TraesCS1B01G096300 chr3B 93.333 165 10 1 2760 2924 816705892 816706055 3.110000e-60 243.0
20 TraesCS1B01G096300 chr3B 92.308 169 11 2 2760 2927 412591386 412591553 4.020000e-59 239.0
21 TraesCS1B01G096300 chr3B 93.985 133 6 1 1 131 405933784 405933652 1.900000e-47 200.0
22 TraesCS1B01G096300 chr6A 93.293 164 10 1 2760 2923 36495963 36496125 1.120000e-59 241.0
23 TraesCS1B01G096300 chr5B 93.293 164 10 1 2760 2923 400546199 400546037 1.120000e-59 241.0
24 TraesCS1B01G096300 chr2B 93.293 164 10 1 2760 2923 111361805 111361967 1.120000e-59 241.0
25 TraesCS1B01G096300 chr2B 93.293 164 10 1 2760 2923 142654665 142654827 1.120000e-59 241.0
26 TraesCS1B01G096300 chr2A 93.293 164 10 1 2760 2923 434580102 434580264 1.120000e-59 241.0
27 TraesCS1B01G096300 chr2A 76.316 418 71 20 1334 1734 94157945 94158351 6.830000e-47 198.0
28 TraesCS1B01G096300 chr2A 91.034 145 9 3 1 142 16864936 16864793 3.180000e-45 193.0
29 TraesCS1B01G096300 chr7B 92.727 165 11 1 2760 2924 731129366 731129529 1.450000e-58 237.0
30 TraesCS1B01G096300 chr3A 96.970 132 4 0 1 132 726308938 726309069 4.050000e-54 222.0
31 TraesCS1B01G096300 chr6B 94.030 134 6 1 1 132 182352011 182351878 5.280000e-48 202.0
32 TraesCS1B01G096300 chr6B 88.889 81 9 0 1435 1515 585902339 585902419 1.980000e-17 100.0
33 TraesCS1B01G096300 chr3D 94.030 134 5 2 1 132 190801990 190801858 1.900000e-47 200.0
34 TraesCS1B01G096300 chr3D 90.476 147 10 3 1 145 355892485 355892341 1.140000e-44 191.0
35 TraesCS1B01G096300 chr2D 94.030 134 5 2 1 132 600859707 600859575 1.900000e-47 200.0
36 TraesCS1B01G096300 chr2D 93.939 132 7 1 1 132 463768127 463768257 6.830000e-47 198.0
37 TraesCS1B01G096300 chr4A 92.199 141 9 1 1 139 6338993 6338853 6.830000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G096300 chr1B 100421298 100424418 3120 False 5764.000000 5764 100.000000 1 3121 1 chr1B.!!$F1 3120
1 TraesCS1B01G096300 chr1B 100631049 100632158 1109 False 1050.000000 1050 83.929000 1022 2128 1 chr1B.!!$F3 1106
2 TraesCS1B01G096300 chr1B 101142998 101144102 1104 False 983.000000 983 82.901000 1023 2128 1 chr1B.!!$F4 1105
3 TraesCS1B01G096300 chr1D 62888991 62891760 2769 False 2018.000000 3723 94.440000 130 3121 2 chr1D.!!$F4 2991
4 TraesCS1B01G096300 chr1D 63357075 63358175 1100 False 1051.000000 1051 84.007000 1023 2128 1 chr1D.!!$F2 1105
5 TraesCS1B01G096300 chr1D 62935739 62936895 1156 False 1033.000000 1033 83.219000 998 2128 1 chr1D.!!$F1 1130
6 TraesCS1B01G096300 chr1A 61008266 61011510 3244 False 1016.666667 2615 86.596667 183 2439 3 chr1A.!!$F3 2256
7 TraesCS1B01G096300 chr1A 61341159 61342286 1127 False 976.000000 976 82.384000 994 2128 1 chr1A.!!$F2 1134
8 TraesCS1B01G096300 chr1A 62253440 62254694 1254 True 514.000000 797 84.923000 1023 2121 2 chr1A.!!$R1 1098
9 TraesCS1B01G096300 chr1A 61284131 61285302 1171 False 490.000000 795 81.974000 993 2128 2 chr1A.!!$F4 1135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 802 0.39086 CGGTGCCATTTTTCCCAACA 59.609 50.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2552 2732 0.181824 ACGCCCTTGGTAAACACACT 59.818 50.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.682787 AGAGATTCCAAATGGACTACTACAT 57.317 36.000 0.54 0.00 45.39 2.29
25 26 8.783660 AGAGATTCCAAATGGACTACTACATA 57.216 34.615 0.54 0.00 45.39 2.29
26 27 8.643324 AGAGATTCCAAATGGACTACTACATAC 58.357 37.037 0.54 0.00 45.39 2.39
27 28 7.434492 AGATTCCAAATGGACTACTACATACG 58.566 38.462 0.54 0.00 45.39 3.06
28 29 5.524971 TCCAAATGGACTACTACATACGG 57.475 43.478 0.00 0.00 39.78 4.02
29 30 5.202765 TCCAAATGGACTACTACATACGGA 58.797 41.667 0.00 0.00 39.78 4.69
30 31 5.836898 TCCAAATGGACTACTACATACGGAT 59.163 40.000 0.00 0.00 39.78 4.18
31 32 5.926542 CCAAATGGACTACTACATACGGATG 59.073 44.000 5.94 5.94 36.84 3.51
32 33 6.462487 CCAAATGGACTACTACATACGGATGT 60.462 42.308 19.12 19.12 42.84 3.06
33 34 7.255695 CCAAATGGACTACTACATACGGATGTA 60.256 40.741 19.32 19.32 41.43 2.29
34 35 8.304596 CAAATGGACTACTACATACGGATGTAT 58.695 37.037 20.64 13.02 45.42 2.29
35 36 9.524496 AAATGGACTACTACATACGGATGTATA 57.476 33.333 20.64 13.41 45.42 1.47
36 37 9.696572 AATGGACTACTACATACGGATGTATAT 57.303 33.333 20.64 14.14 45.42 0.86
38 39 9.828039 TGGACTACTACATACGGATGTATATAG 57.172 37.037 24.59 24.59 45.42 1.31
72 73 9.547753 TTAGAATAGATTCGCTTATTTTGCTCT 57.452 29.630 0.00 0.00 41.56 4.09
73 74 7.859598 AGAATAGATTCGCTTATTTTGCTCTG 58.140 34.615 0.00 0.00 41.56 3.35
74 75 7.497249 AGAATAGATTCGCTTATTTTGCTCTGT 59.503 33.333 0.00 0.00 41.56 3.41
75 76 8.662781 AATAGATTCGCTTATTTTGCTCTGTA 57.337 30.769 0.00 0.00 0.00 2.74
76 77 8.839310 ATAGATTCGCTTATTTTGCTCTGTAT 57.161 30.769 0.00 0.00 0.00 2.29
77 78 6.952743 AGATTCGCTTATTTTGCTCTGTATG 58.047 36.000 0.00 0.00 0.00 2.39
78 79 6.540189 AGATTCGCTTATTTTGCTCTGTATGT 59.460 34.615 0.00 0.00 0.00 2.29
79 80 7.710907 AGATTCGCTTATTTTGCTCTGTATGTA 59.289 33.333 0.00 0.00 0.00 2.29
80 81 6.828502 TCGCTTATTTTGCTCTGTATGTAG 57.171 37.500 0.00 0.00 0.00 2.74
81 82 6.338146 TCGCTTATTTTGCTCTGTATGTAGT 58.662 36.000 0.00 0.00 0.00 2.73
82 83 6.475727 TCGCTTATTTTGCTCTGTATGTAGTC 59.524 38.462 0.00 0.00 0.00 2.59
83 84 6.255670 CGCTTATTTTGCTCTGTATGTAGTCA 59.744 38.462 0.00 0.00 0.00 3.41
84 85 7.042456 CGCTTATTTTGCTCTGTATGTAGTCAT 60.042 37.037 0.00 0.00 38.00 3.06
85 86 8.616076 GCTTATTTTGCTCTGTATGTAGTCATT 58.384 33.333 0.00 0.00 35.70 2.57
88 89 7.744087 TTTTGCTCTGTATGTAGTCATTTGT 57.256 32.000 0.00 0.00 35.70 2.83
89 90 7.744087 TTTGCTCTGTATGTAGTCATTTGTT 57.256 32.000 0.00 0.00 35.70 2.83
90 91 6.726258 TGCTCTGTATGTAGTCATTTGTTG 57.274 37.500 0.00 0.00 35.70 3.33
91 92 6.463360 TGCTCTGTATGTAGTCATTTGTTGA 58.537 36.000 0.00 0.00 35.70 3.18
92 93 6.934083 TGCTCTGTATGTAGTCATTTGTTGAA 59.066 34.615 0.00 0.00 35.70 2.69
93 94 7.443879 TGCTCTGTATGTAGTCATTTGTTGAAA 59.556 33.333 0.00 0.00 35.70 2.69
94 95 8.454106 GCTCTGTATGTAGTCATTTGTTGAAAT 58.546 33.333 0.00 0.00 35.70 2.17
95 96 9.979270 CTCTGTATGTAGTCATTTGTTGAAATC 57.021 33.333 0.00 0.00 35.70 2.17
96 97 9.725019 TCTGTATGTAGTCATTTGTTGAAATCT 57.275 29.630 0.00 0.00 35.70 2.40
97 98 9.979270 CTGTATGTAGTCATTTGTTGAAATCTC 57.021 33.333 0.00 0.00 35.70 2.75
98 99 9.725019 TGTATGTAGTCATTTGTTGAAATCTCT 57.275 29.630 0.00 0.00 35.70 3.10
102 103 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
105 106 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
106 107 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
107 108 9.559732 TCATTTGTTGAAATCTCTAGAAAGACA 57.440 29.630 0.00 0.00 28.65 3.41
110 111 8.964476 TTGTTGAAATCTCTAGAAAGACAACT 57.036 30.769 19.80 0.00 36.89 3.16
121 122 9.291664 CTCTAGAAAGACAACTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
122 123 8.248945 TCTAGAAAGACAACTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
123 124 7.001099 AGAAAGACAACTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
124 125 7.097834 AGAAAGACAACTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
125 126 5.340439 AGACAACTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
126 127 5.021458 AGACAACTATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
127 128 5.482878 AGACAACTATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
128 129 5.731591 ACAACTATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
136 137 3.354467 AGGAACGGAGGAAGTACTACTG 58.646 50.000 0.00 0.00 0.00 2.74
210 211 6.183360 ACGAAAACGAAAGCAAGTCTTAAAGA 60.183 34.615 0.00 0.00 33.88 2.52
264 269 1.903860 TGGCCAAGTCCTACGTACATT 59.096 47.619 0.61 0.00 0.00 2.71
287 292 2.816087 CAGAGACCCTGTCAATGGTTTG 59.184 50.000 0.00 0.00 38.10 2.93
348 353 3.884037 ACCTTCACACATCCCTTTTCT 57.116 42.857 0.00 0.00 0.00 2.52
425 430 3.630769 TGGTCGGATAGATAGTGACACAC 59.369 47.826 8.59 0.00 34.10 3.82
457 462 7.101054 TGTCGGCCACCATATACTTATATTTC 58.899 38.462 2.24 0.00 0.00 2.17
512 517 1.402968 TCGCTATGGAGTACGGACAAC 59.597 52.381 0.00 0.00 0.00 3.32
553 558 1.855295 TGCTCCACCATGCATGATTT 58.145 45.000 28.31 8.88 33.94 2.17
554 559 3.015675 TGCTCCACCATGCATGATTTA 57.984 42.857 28.31 9.60 33.94 1.40
574 579 2.813179 GCATCGTGCACCGTCCATC 61.813 63.158 12.15 0.00 44.26 3.51
588 593 1.412710 GTCCATCGGTGCCTTGAGATA 59.587 52.381 0.00 0.00 0.00 1.98
613 618 0.675837 AGCTTGTCGTGATGCATGCT 60.676 50.000 20.33 0.00 39.98 3.79
627 632 2.336945 CATGCTTGCATGGACTAGGA 57.663 50.000 23.42 0.00 0.00 2.94
646 651 2.879907 CAGGGTTTCCGCTGCATG 59.120 61.111 0.00 0.00 43.59 4.06
647 652 1.675310 CAGGGTTTCCGCTGCATGA 60.675 57.895 0.00 0.00 43.59 3.07
648 653 1.377725 AGGGTTTCCGCTGCATGAG 60.378 57.895 0.00 0.00 38.33 2.90
649 654 1.675641 GGGTTTCCGCTGCATGAGT 60.676 57.895 0.00 0.00 0.00 3.41
650 655 0.392461 GGGTTTCCGCTGCATGAGTA 60.392 55.000 0.00 0.00 0.00 2.59
651 656 1.009829 GGTTTCCGCTGCATGAGTAG 58.990 55.000 0.00 0.00 0.00 2.57
652 657 1.405526 GGTTTCCGCTGCATGAGTAGA 60.406 52.381 0.00 0.00 0.00 2.59
689 694 2.609491 GCTTAAGAAAAGGCCCGGTTTG 60.609 50.000 6.67 0.00 0.00 2.93
699 704 1.472552 GGCCCGGTTTGATTATTTGCC 60.473 52.381 0.00 0.00 0.00 4.52
720 725 4.287720 CCGTTAGGTGAAAAGAAGCAAAC 58.712 43.478 0.00 0.00 0.00 2.93
796 802 0.390860 CGGTGCCATTTTTCCCAACA 59.609 50.000 0.00 0.00 0.00 3.33
797 803 1.202580 CGGTGCCATTTTTCCCAACAA 60.203 47.619 0.00 0.00 0.00 2.83
798 804 2.493035 GGTGCCATTTTTCCCAACAAG 58.507 47.619 0.00 0.00 0.00 3.16
805 812 5.586643 GCCATTTTTCCCAACAAGTACAAAA 59.413 36.000 0.00 0.00 0.00 2.44
808 815 7.281999 CCATTTTTCCCAACAAGTACAAAATGT 59.718 33.333 15.36 5.21 37.98 2.71
829 836 9.891828 AAATGTATGCATATATAAACACCAACG 57.108 29.630 15.42 0.00 34.39 4.10
831 838 6.483640 TGTATGCATATATAAACACCAACGCA 59.516 34.615 10.16 0.00 0.00 5.24
847 854 2.143122 ACGCATATACTCATTTGGCCG 58.857 47.619 0.00 0.00 0.00 6.13
869 876 3.686726 GTCAACTCATCTCCACATCAACC 59.313 47.826 0.00 0.00 0.00 3.77
870 877 3.327464 TCAACTCATCTCCACATCAACCA 59.673 43.478 0.00 0.00 0.00 3.67
871 878 4.019051 TCAACTCATCTCCACATCAACCAT 60.019 41.667 0.00 0.00 0.00 3.55
904 911 3.557595 ACGCAATTCCGATCAATCTCTTC 59.442 43.478 0.00 0.00 0.00 2.87
905 912 3.806521 CGCAATTCCGATCAATCTCTTCT 59.193 43.478 0.00 0.00 0.00 2.85
906 913 4.084641 CGCAATTCCGATCAATCTCTTCTC 60.085 45.833 0.00 0.00 0.00 2.87
912 919 3.803231 CCGATCAATCTCTTCTCAAGCTG 59.197 47.826 0.00 0.00 0.00 4.24
948 955 1.862008 GCTACAGGCGATCGAACTCAG 60.862 57.143 21.57 14.70 0.00 3.35
1113 1125 0.317479 CGAAGTCTTTGGAGGTCGGT 59.683 55.000 0.00 0.00 0.00 4.69
1304 1474 6.566079 ATCCATTCAACCTCTGATCTAACA 57.434 37.500 0.00 0.00 32.78 2.41
1346 1517 2.187946 GTGTAGGGCTGCGATGCT 59.812 61.111 0.00 0.00 0.00 3.79
1583 1754 4.501714 GACGGCCGCGTGTCCATA 62.502 66.667 28.58 0.00 0.00 2.74
1654 1825 3.123620 GCTCGTGGCCAGCTTCAG 61.124 66.667 5.11 0.00 33.75 3.02
1748 1921 1.522355 CTTCACGCAGCGGATCCAT 60.522 57.895 21.15 0.00 0.00 3.41
1792 1965 2.782222 CCGACCCGTCCATCGACAT 61.782 63.158 0.00 0.00 40.86 3.06
1901 2074 0.606944 CGGGGGAATTCGACAACCAA 60.607 55.000 0.00 0.00 0.00 3.67
2103 2276 2.499289 GAGATCAGGGAGAAGTGCTTCA 59.501 50.000 13.58 0.00 41.84 3.02
2115 2288 1.070758 AGTGCTTCATCGTCAACCACT 59.929 47.619 0.00 0.00 0.00 4.00
2160 2337 3.459232 TCATTTGATGGGAGACTAGCG 57.541 47.619 0.00 0.00 0.00 4.26
2167 2344 3.069586 TGATGGGAGACTAGCGGTTAATG 59.930 47.826 0.00 0.00 0.00 1.90
2170 2347 3.262405 TGGGAGACTAGCGGTTAATGTTT 59.738 43.478 0.00 0.00 0.00 2.83
2299 2477 9.225436 TGTATGTCAAAAGCATGAGTGTATAAA 57.775 29.630 0.00 0.00 0.00 1.40
2311 2489 8.333908 GCATGAGTGTATAAATCAGAAGAACAG 58.666 37.037 0.00 0.00 0.00 3.16
2385 2563 0.516877 TCTTTCATTTGCACGAGCGG 59.483 50.000 0.00 0.00 46.23 5.52
2387 2565 0.886938 TTTCATTTGCACGAGCGGGA 60.887 50.000 0.00 0.00 46.23 5.14
2471 2651 0.758734 CCAAGATGGCATCCGGAGTA 59.241 55.000 23.33 0.00 0.00 2.59
2474 2654 2.088104 AGATGGCATCCGGAGTAAGA 57.912 50.000 23.33 0.00 0.00 2.10
2493 2673 3.771577 GAGGACAAAGTTTCTCCTCCA 57.228 47.619 22.82 0.00 43.08 3.86
2494 2674 3.669536 GAGGACAAAGTTTCTCCTCCAG 58.330 50.000 22.82 0.00 43.08 3.86
2495 2675 2.155279 GGACAAAGTTTCTCCTCCAGC 58.845 52.381 2.84 0.00 0.00 4.85
2496 2676 1.801178 GACAAAGTTTCTCCTCCAGCG 59.199 52.381 0.00 0.00 0.00 5.18
2497 2677 1.160137 CAAAGTTTCTCCTCCAGCGG 58.840 55.000 0.00 0.00 0.00 5.52
2498 2678 0.606673 AAAGTTTCTCCTCCAGCGGC 60.607 55.000 0.00 0.00 0.00 6.53
2499 2679 2.788191 AAGTTTCTCCTCCAGCGGCG 62.788 60.000 0.51 0.51 0.00 6.46
2500 2680 3.311110 TTTCTCCTCCAGCGGCGT 61.311 61.111 9.37 0.00 0.00 5.68
2501 2681 3.296709 TTTCTCCTCCAGCGGCGTC 62.297 63.158 9.37 0.13 0.00 5.19
2503 2683 4.069232 CTCCTCCAGCGGCGTCAA 62.069 66.667 9.37 0.00 0.00 3.18
2520 2700 3.606153 CGTCAATTCCTTCCAAACACGTC 60.606 47.826 0.00 0.00 0.00 4.34
2544 2724 0.328258 AAACGCTAGTTGGGCCTGAT 59.672 50.000 4.53 0.00 41.05 2.90
2547 2727 2.605257 ACGCTAGTTGGGCCTGATATA 58.395 47.619 4.53 0.00 0.00 0.86
2548 2728 3.173965 ACGCTAGTTGGGCCTGATATAT 58.826 45.455 4.53 0.00 0.00 0.86
2552 2732 5.560724 GCTAGTTGGGCCTGATATATGAAA 58.439 41.667 4.53 0.00 0.00 2.69
2571 2751 0.181824 AGTGTGTTTACCAAGGGCGT 59.818 50.000 0.00 0.00 0.00 5.68
2647 2827 9.965902 ATTATCTATCCCTGAAATTGGTGTATC 57.034 33.333 0.00 0.00 0.00 2.24
2648 2828 7.639062 ATCTATCCCTGAAATTGGTGTATCT 57.361 36.000 0.00 0.00 0.00 1.98
2649 2829 8.742125 ATCTATCCCTGAAATTGGTGTATCTA 57.258 34.615 0.00 0.00 0.00 1.98
2650 2830 8.742125 TCTATCCCTGAAATTGGTGTATCTAT 57.258 34.615 0.00 0.00 0.00 1.98
2668 2848 6.753913 ATCTATTCTAGACCCATTTCAGCA 57.246 37.500 0.00 0.00 37.69 4.41
2731 2911 9.263446 ACGGAGGGAGTAATAAATAAGCATATA 57.737 33.333 0.00 0.00 0.00 0.86
2778 2958 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
2779 2959 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
2800 2980 2.637521 GGGAACGTTTTCTCCCCAC 58.362 57.895 15.30 0.00 45.03 4.61
2801 2981 0.109913 GGGAACGTTTTCTCCCCACT 59.890 55.000 15.30 0.00 45.03 4.00
2802 2982 1.235724 GGAACGTTTTCTCCCCACTG 58.764 55.000 0.46 0.00 31.71 3.66
2803 2983 1.202722 GGAACGTTTTCTCCCCACTGA 60.203 52.381 0.46 0.00 31.71 3.41
2804 2984 2.567985 GAACGTTTTCTCCCCACTGAA 58.432 47.619 0.46 0.00 0.00 3.02
2805 2985 2.951229 ACGTTTTCTCCCCACTGAAT 57.049 45.000 0.00 0.00 0.00 2.57
2806 2986 2.504367 ACGTTTTCTCCCCACTGAATG 58.496 47.619 0.00 0.00 0.00 2.67
2807 2987 1.200020 CGTTTTCTCCCCACTGAATGC 59.800 52.381 0.00 0.00 0.00 3.56
2808 2988 1.200020 GTTTTCTCCCCACTGAATGCG 59.800 52.381 0.00 0.00 0.00 4.73
2809 2989 0.960364 TTTCTCCCCACTGAATGCGC 60.960 55.000 0.00 0.00 0.00 6.09
2810 2990 2.046023 CTCCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
2811 2991 1.452651 CTCCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
2812 2992 1.442526 CTCCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
2813 2993 2.711311 CCCACTGAATGCGCATCG 59.289 61.111 25.53 17.09 0.00 3.84
2814 2994 2.108514 CCCACTGAATGCGCATCGT 61.109 57.895 25.53 17.75 0.00 3.73
2815 2995 1.349627 CCACTGAATGCGCATCGTC 59.650 57.895 25.53 18.94 0.00 4.20
2816 2996 1.012998 CACTGAATGCGCATCGTCG 60.013 57.895 25.53 15.91 0.00 5.12
2817 2997 2.167219 ACTGAATGCGCATCGTCGG 61.167 57.895 25.53 24.17 0.00 4.79
2818 2998 1.878069 CTGAATGCGCATCGTCGGA 60.878 57.895 25.53 2.66 0.00 4.55
2819 2999 1.420641 CTGAATGCGCATCGTCGGAA 61.421 55.000 25.53 1.92 32.64 4.30
2820 3000 1.016653 TGAATGCGCATCGTCGGAAA 61.017 50.000 25.53 0.00 32.64 3.13
2821 3001 0.304705 GAATGCGCATCGTCGGAAAT 59.695 50.000 25.53 3.87 32.64 2.17
2822 3002 0.304705 AATGCGCATCGTCGGAAATC 59.695 50.000 25.53 0.00 32.64 2.17
2823 3003 1.498865 ATGCGCATCGTCGGAAATCC 61.499 55.000 19.28 0.00 32.64 3.01
2824 3004 1.883084 GCGCATCGTCGGAAATCCT 60.883 57.895 0.30 0.00 0.00 3.24
2825 3005 1.927210 CGCATCGTCGGAAATCCTG 59.073 57.895 0.00 0.00 0.00 3.86
2826 3006 0.527600 CGCATCGTCGGAAATCCTGA 60.528 55.000 0.00 0.00 0.00 3.86
2827 3007 1.651987 GCATCGTCGGAAATCCTGAA 58.348 50.000 0.00 0.00 0.00 3.02
2828 3008 2.006888 GCATCGTCGGAAATCCTGAAA 58.993 47.619 0.00 0.00 0.00 2.69
2829 3009 2.614057 GCATCGTCGGAAATCCTGAAAT 59.386 45.455 0.00 0.00 0.00 2.17
2830 3010 3.807622 GCATCGTCGGAAATCCTGAAATA 59.192 43.478 0.00 0.00 0.00 1.40
2831 3011 4.272504 GCATCGTCGGAAATCCTGAAATAA 59.727 41.667 0.00 0.00 0.00 1.40
2832 3012 5.220777 GCATCGTCGGAAATCCTGAAATAAA 60.221 40.000 0.00 0.00 0.00 1.40
2833 3013 6.513393 GCATCGTCGGAAATCCTGAAATAAAT 60.513 38.462 0.00 0.00 0.00 1.40
2834 3014 6.598753 TCGTCGGAAATCCTGAAATAAATC 57.401 37.500 0.00 0.00 0.00 2.17
2835 3015 5.526111 TCGTCGGAAATCCTGAAATAAATCC 59.474 40.000 0.00 0.00 0.00 3.01
2836 3016 5.295787 CGTCGGAAATCCTGAAATAAATCCA 59.704 40.000 0.00 0.00 0.00 3.41
2837 3017 6.511767 CGTCGGAAATCCTGAAATAAATCCAG 60.512 42.308 0.00 0.00 0.00 3.86
2838 3018 5.827797 TCGGAAATCCTGAAATAAATCCAGG 59.172 40.000 0.00 0.00 46.64 4.45
2848 3028 8.511465 CTGAAATAAATCCAGGAATAAATGCG 57.489 34.615 0.00 0.00 0.00 4.73
2849 3029 8.231692 TGAAATAAATCCAGGAATAAATGCGA 57.768 30.769 0.00 0.00 0.00 5.10
2850 3030 8.352201 TGAAATAAATCCAGGAATAAATGCGAG 58.648 33.333 0.00 0.00 0.00 5.03
2851 3031 4.574599 AAATCCAGGAATAAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
2852 3032 2.708216 TCCAGGAATAAATGCGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
2853 3033 2.288666 TCCAGGAATAAATGCGAGCAC 58.711 47.619 0.00 0.00 0.00 4.40
2854 3034 1.334869 CCAGGAATAAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
2855 3035 2.016318 CAGGAATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
2856 3036 2.032550 CAGGAATAAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
2857 3037 1.334869 GGAATAAATGCGAGCACCAGG 59.665 52.381 0.00 0.00 0.00 4.45
2858 3038 2.288666 GAATAAATGCGAGCACCAGGA 58.711 47.619 0.00 0.00 0.00 3.86
2859 3039 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
2860 3040 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
2861 3041 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
2862 3042 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
2863 3043 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
2864 3044 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
2865 3045 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
2866 3046 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
2867 3047 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
2868 3048 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
2870 3050 1.823250 GCACCAGGATTTGAACCCTGT 60.823 52.381 3.52 0.00 46.47 4.00
2871 3051 2.597455 CACCAGGATTTGAACCCTGTT 58.403 47.619 3.52 0.00 46.47 3.16
2872 3052 2.297033 CACCAGGATTTGAACCCTGTTG 59.703 50.000 3.52 0.00 46.47 3.33
2873 3053 1.895131 CCAGGATTTGAACCCTGTTGG 59.105 52.381 3.52 0.00 46.47 3.77
2883 3063 3.754043 CCTGTTGGGCTGGGGATA 58.246 61.111 0.00 0.00 33.11 2.59
2884 3064 1.227383 CCTGTTGGGCTGGGGATAC 59.773 63.158 0.00 0.00 33.11 2.24
2901 3081 5.871396 GGATACCACAATCTCTCTAACCA 57.129 43.478 0.00 0.00 0.00 3.67
2902 3082 6.426646 GGATACCACAATCTCTCTAACCAT 57.573 41.667 0.00 0.00 0.00 3.55
2903 3083 6.459923 GGATACCACAATCTCTCTAACCATC 58.540 44.000 0.00 0.00 0.00 3.51
2904 3084 6.042093 GGATACCACAATCTCTCTAACCATCA 59.958 42.308 0.00 0.00 0.00 3.07
2905 3085 5.762179 ACCACAATCTCTCTAACCATCAA 57.238 39.130 0.00 0.00 0.00 2.57
2906 3086 6.126863 ACCACAATCTCTCTAACCATCAAA 57.873 37.500 0.00 0.00 0.00 2.69
2907 3087 6.725364 ACCACAATCTCTCTAACCATCAAAT 58.275 36.000 0.00 0.00 0.00 2.32
2908 3088 6.825721 ACCACAATCTCTCTAACCATCAAATC 59.174 38.462 0.00 0.00 0.00 2.17
2909 3089 6.825213 CCACAATCTCTCTAACCATCAAATCA 59.175 38.462 0.00 0.00 0.00 2.57
2910 3090 7.201679 CCACAATCTCTCTAACCATCAAATCAC 60.202 40.741 0.00 0.00 0.00 3.06
2911 3091 7.335171 CACAATCTCTCTAACCATCAAATCACA 59.665 37.037 0.00 0.00 0.00 3.58
2912 3092 7.551974 ACAATCTCTCTAACCATCAAATCACAG 59.448 37.037 0.00 0.00 0.00 3.66
2913 3093 5.982356 TCTCTCTAACCATCAAATCACAGG 58.018 41.667 0.00 0.00 0.00 4.00
2914 3094 5.485353 TCTCTCTAACCATCAAATCACAGGT 59.515 40.000 0.00 0.00 0.00 4.00
2915 3095 6.013379 TCTCTCTAACCATCAAATCACAGGTT 60.013 38.462 0.00 0.00 44.23 3.50
2916 3096 5.939883 TCTCTAACCATCAAATCACAGGTTG 59.060 40.000 0.00 0.00 42.19 3.77
2917 3097 5.009631 TCTAACCATCAAATCACAGGTTGG 58.990 41.667 0.00 0.00 42.19 3.77
2918 3098 3.243359 ACCATCAAATCACAGGTTGGT 57.757 42.857 0.00 0.00 0.00 3.67
2919 3099 3.575805 ACCATCAAATCACAGGTTGGTT 58.424 40.909 0.00 0.00 32.23 3.67
2920 3100 3.573967 ACCATCAAATCACAGGTTGGTTC 59.426 43.478 0.00 0.00 32.23 3.62
2921 3101 3.366273 CCATCAAATCACAGGTTGGTTCG 60.366 47.826 0.00 0.00 0.00 3.95
2922 3102 1.606668 TCAAATCACAGGTTGGTTCGC 59.393 47.619 0.00 0.00 0.00 4.70
2923 3103 1.608590 CAAATCACAGGTTGGTTCGCT 59.391 47.619 0.00 0.00 0.00 4.93
2924 3104 2.811431 CAAATCACAGGTTGGTTCGCTA 59.189 45.455 0.00 0.00 0.00 4.26
2925 3105 3.350219 AATCACAGGTTGGTTCGCTAT 57.650 42.857 0.00 0.00 0.00 2.97
2926 3106 2.093306 TCACAGGTTGGTTCGCTATG 57.907 50.000 0.00 0.00 0.00 2.23
2927 3107 1.621317 TCACAGGTTGGTTCGCTATGA 59.379 47.619 0.00 0.00 0.00 2.15
2928 3108 1.732259 CACAGGTTGGTTCGCTATGAC 59.268 52.381 0.00 0.00 0.00 3.06
2929 3109 1.346395 ACAGGTTGGTTCGCTATGACA 59.654 47.619 0.00 0.00 0.00 3.58
2930 3110 2.027192 ACAGGTTGGTTCGCTATGACAT 60.027 45.455 0.00 0.00 0.00 3.06
2962 3142 3.621794 CGCAAGGCAAGTAGAAATATGC 58.378 45.455 0.00 0.00 38.06 3.14
3063 3243 3.185797 GTGTAATCTGTCAACACCGGTTC 59.814 47.826 2.97 0.00 38.02 3.62
3088 3268 2.912956 AGAAGCAATGTCACCTCCCTTA 59.087 45.455 0.00 0.00 0.00 2.69
3093 3273 3.433598 GCAATGTCACCTCCCTTATAGCA 60.434 47.826 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.202765 TCCGTATGTAGTAGTCCATTTGGA 58.797 41.667 0.00 0.00 43.08 3.53
7 8 5.524971 TCCGTATGTAGTAGTCCATTTGG 57.475 43.478 0.00 0.00 0.00 3.28
8 9 6.513180 ACATCCGTATGTAGTAGTCCATTTG 58.487 40.000 0.00 0.00 44.66 2.32
9 10 6.726490 ACATCCGTATGTAGTAGTCCATTT 57.274 37.500 0.00 0.00 44.66 2.32
46 47 9.547753 AGAGCAAAATAAGCGAATCTATTCTAA 57.452 29.630 1.52 0.00 37.01 2.10
47 48 8.982685 CAGAGCAAAATAAGCGAATCTATTCTA 58.017 33.333 1.52 0.00 37.01 2.10
48 49 7.497249 ACAGAGCAAAATAAGCGAATCTATTCT 59.503 33.333 1.52 0.00 37.01 2.40
49 50 7.634522 ACAGAGCAAAATAAGCGAATCTATTC 58.365 34.615 0.00 0.00 37.01 1.75
50 51 7.559590 ACAGAGCAAAATAAGCGAATCTATT 57.440 32.000 0.00 0.00 37.01 1.73
51 52 8.715998 CATACAGAGCAAAATAAGCGAATCTAT 58.284 33.333 0.00 0.00 37.01 1.98
52 53 7.710907 ACATACAGAGCAAAATAAGCGAATCTA 59.289 33.333 0.00 0.00 37.01 1.98
53 54 6.540189 ACATACAGAGCAAAATAAGCGAATCT 59.460 34.615 0.00 0.00 37.01 2.40
54 55 6.719365 ACATACAGAGCAAAATAAGCGAATC 58.281 36.000 0.00 0.00 37.01 2.52
55 56 6.683974 ACATACAGAGCAAAATAAGCGAAT 57.316 33.333 0.00 0.00 37.01 3.34
56 57 6.816640 ACTACATACAGAGCAAAATAAGCGAA 59.183 34.615 0.00 0.00 37.01 4.70
57 58 6.338146 ACTACATACAGAGCAAAATAAGCGA 58.662 36.000 0.00 0.00 37.01 4.93
58 59 6.255670 TGACTACATACAGAGCAAAATAAGCG 59.744 38.462 0.00 0.00 37.01 4.68
59 60 7.539712 TGACTACATACAGAGCAAAATAAGC 57.460 36.000 0.00 0.00 0.00 3.09
62 63 9.448438 ACAAATGACTACATACAGAGCAAAATA 57.552 29.630 0.00 0.00 35.50 1.40
63 64 8.340618 ACAAATGACTACATACAGAGCAAAAT 57.659 30.769 0.00 0.00 35.50 1.82
64 65 7.744087 ACAAATGACTACATACAGAGCAAAA 57.256 32.000 0.00 0.00 35.50 2.44
65 66 7.443879 TCAACAAATGACTACATACAGAGCAAA 59.556 33.333 0.00 0.00 35.50 3.68
66 67 6.934083 TCAACAAATGACTACATACAGAGCAA 59.066 34.615 0.00 0.00 35.50 3.91
67 68 6.463360 TCAACAAATGACTACATACAGAGCA 58.537 36.000 0.00 0.00 35.50 4.26
68 69 6.968131 TCAACAAATGACTACATACAGAGC 57.032 37.500 0.00 0.00 35.50 4.09
69 70 9.979270 GATTTCAACAAATGACTACATACAGAG 57.021 33.333 0.00 0.00 37.92 3.35
70 71 9.725019 AGATTTCAACAAATGACTACATACAGA 57.275 29.630 0.00 0.00 37.92 3.41
71 72 9.979270 GAGATTTCAACAAATGACTACATACAG 57.021 33.333 0.00 0.00 37.92 2.74
72 73 9.725019 AGAGATTTCAACAAATGACTACATACA 57.275 29.630 0.00 0.00 37.92 2.29
76 77 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
79 80 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
80 81 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
81 82 9.559732 TGTCTTTCTAGAGATTTCAACAAATGA 57.440 29.630 0.00 0.00 31.94 2.57
84 85 9.396022 AGTTGTCTTTCTAGAGATTTCAACAAA 57.604 29.630 20.61 1.33 36.26 2.83
85 86 8.964476 AGTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 20.61 12.07 36.26 2.83
95 96 9.291664 CGTTCCTAAATAGTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
96 97 8.248945 CCGTTCCTAAATAGTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
97 98 8.248945 TCCGTTCCTAAATAGTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
98 99 8.125978 TCCGTTCCTAAATAGTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
99 100 7.001099 TCCGTTCCTAAATAGTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
100 101 6.313164 CCTCCGTTCCTAAATAGTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
101 102 6.013984 TCCTCCGTTCCTAAATAGTTGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
102 103 5.482878 TCCTCCGTTCCTAAATAGTTGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
103 104 5.021458 TCCTCCGTTCCTAAATAGTTGTCT 58.979 41.667 0.00 0.00 0.00 3.41
104 105 5.334724 TCCTCCGTTCCTAAATAGTTGTC 57.665 43.478 0.00 0.00 0.00 3.18
105 106 5.247792 ACTTCCTCCGTTCCTAAATAGTTGT 59.752 40.000 0.00 0.00 0.00 3.32
106 107 5.731591 ACTTCCTCCGTTCCTAAATAGTTG 58.268 41.667 0.00 0.00 0.00 3.16
107 108 6.666980 AGTACTTCCTCCGTTCCTAAATAGTT 59.333 38.462 0.00 0.00 0.00 2.24
108 109 6.193504 AGTACTTCCTCCGTTCCTAAATAGT 58.806 40.000 0.00 0.00 0.00 2.12
109 110 6.712179 AGTACTTCCTCCGTTCCTAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
110 111 7.284034 CAGTAGTACTTCCTCCGTTCCTAAATA 59.716 40.741 0.00 0.00 0.00 1.40
111 112 6.096564 CAGTAGTACTTCCTCCGTTCCTAAAT 59.903 42.308 0.00 0.00 0.00 1.40
112 113 5.416952 CAGTAGTACTTCCTCCGTTCCTAAA 59.583 44.000 0.00 0.00 0.00 1.85
113 114 4.946157 CAGTAGTACTTCCTCCGTTCCTAA 59.054 45.833 0.00 0.00 0.00 2.69
114 115 4.225942 TCAGTAGTACTTCCTCCGTTCCTA 59.774 45.833 0.00 0.00 0.00 2.94
115 116 3.009916 TCAGTAGTACTTCCTCCGTTCCT 59.990 47.826 0.00 0.00 0.00 3.36
116 117 3.350833 TCAGTAGTACTTCCTCCGTTCC 58.649 50.000 0.00 0.00 0.00 3.62
117 118 4.639310 TCATCAGTAGTACTTCCTCCGTTC 59.361 45.833 0.00 0.00 0.00 3.95
118 119 4.597004 TCATCAGTAGTACTTCCTCCGTT 58.403 43.478 0.00 0.00 0.00 4.44
119 120 4.232188 TCATCAGTAGTACTTCCTCCGT 57.768 45.455 0.00 0.00 0.00 4.69
120 121 6.655425 TCATATCATCAGTAGTACTTCCTCCG 59.345 42.308 0.00 0.00 0.00 4.63
121 122 8.588290 ATCATATCATCAGTAGTACTTCCTCC 57.412 38.462 0.00 0.00 0.00 4.30
163 164 8.605354 TCGTTTATACAGTACTAACGTGATTG 57.395 34.615 21.13 0.57 41.48 2.67
164 165 9.624697 TTTCGTTTATACAGTACTAACGTGATT 57.375 29.630 21.13 0.53 41.48 2.57
165 166 9.624697 TTTTCGTTTATACAGTACTAACGTGAT 57.375 29.630 21.13 2.89 41.48 3.06
166 167 8.901748 GTTTTCGTTTATACAGTACTAACGTGA 58.098 33.333 21.13 12.29 41.48 4.35
169 170 8.145749 TCGTTTTCGTTTATACAGTACTAACG 57.854 34.615 17.69 17.69 44.46 3.18
172 173 8.638565 GCTTTCGTTTTCGTTTATACAGTACTA 58.361 33.333 0.00 0.00 44.46 1.82
173 174 7.169645 TGCTTTCGTTTTCGTTTATACAGTACT 59.830 33.333 0.00 0.00 44.46 2.73
174 175 7.282916 TGCTTTCGTTTTCGTTTATACAGTAC 58.717 34.615 0.00 0.00 44.46 2.73
175 176 7.405469 TGCTTTCGTTTTCGTTTATACAGTA 57.595 32.000 0.00 0.00 44.46 2.74
177 178 6.849305 ACTTGCTTTCGTTTTCGTTTATACAG 59.151 34.615 0.00 0.00 44.46 2.74
178 179 6.717413 ACTTGCTTTCGTTTTCGTTTATACA 58.283 32.000 0.00 0.00 44.46 2.29
210 211 8.796475 GTGGGTTTGTATGATCTATATGCAATT 58.204 33.333 0.00 0.00 31.77 2.32
221 222 3.596214 AGTCGTGTGGGTTTGTATGATC 58.404 45.455 0.00 0.00 0.00 2.92
287 292 5.010922 AGGCAGATGAGTCAGATTATGAGAC 59.989 44.000 0.00 0.00 39.07 3.36
348 353 7.358600 CGAAACAGTCGTATTAACAGCTAACAA 60.359 37.037 0.00 0.00 45.09 2.83
425 430 3.560278 GGTGGCCGACATTACGCG 61.560 66.667 3.53 3.53 0.00 6.01
457 462 5.812127 TCGATTGATCAATATAAGATGGGCG 59.188 40.000 20.75 14.91 0.00 6.13
512 517 5.215160 CAAATCAACGTCTTTTCTTCCCAG 58.785 41.667 0.00 0.00 0.00 4.45
574 579 1.421410 GCACGTATCTCAAGGCACCG 61.421 60.000 0.00 0.00 0.00 4.94
582 587 1.732405 CGACAAGCTGCACGTATCTCA 60.732 52.381 1.02 0.00 0.00 3.27
588 593 1.300931 ATCACGACAAGCTGCACGT 60.301 52.632 1.02 5.44 35.02 4.49
613 618 0.543277 CCTGCTCCTAGTCCATGCAA 59.457 55.000 0.00 0.00 33.07 4.08
617 622 1.840635 GAAACCCTGCTCCTAGTCCAT 59.159 52.381 0.00 0.00 0.00 3.41
673 678 2.009681 AATCAAACCGGGCCTTTTCT 57.990 45.000 6.32 0.00 0.00 2.52
689 694 6.848451 TCTTTTCACCTAACGGCAAATAATC 58.152 36.000 0.00 0.00 0.00 1.75
699 704 5.169836 AGTTTGCTTCTTTTCACCTAACG 57.830 39.130 0.00 0.00 0.00 3.18
720 725 2.097954 TCGCTGCATGGCTTTAATGAAG 59.902 45.455 0.00 0.00 38.45 3.02
723 728 1.831343 GTCGCTGCATGGCTTTAATG 58.169 50.000 0.00 0.00 0.00 1.90
805 812 7.174080 TGCGTTGGTGTTTATATATGCATACAT 59.826 33.333 8.99 5.51 40.49 2.29
808 815 7.680442 ATGCGTTGGTGTTTATATATGCATA 57.320 32.000 9.27 9.27 36.71 3.14
829 836 3.138304 TGACGGCCAAATGAGTATATGC 58.862 45.455 2.24 0.00 0.00 3.14
831 838 5.036117 AGTTGACGGCCAAATGAGTATAT 57.964 39.130 2.24 0.00 36.36 0.86
847 854 3.686726 GGTTGATGTGGAGATGAGTTGAC 59.313 47.826 0.00 0.00 0.00 3.18
1089 1101 0.317479 CCTCCAAAGACTTCGACGGT 59.683 55.000 0.00 0.00 0.00 4.83
1304 1474 6.536582 CGTGTGATCAAATAGAGGAATCAACT 59.463 38.462 0.00 0.00 0.00 3.16
1346 1517 0.601057 TCGAGTTGATCAGCACCGAA 59.399 50.000 19.02 7.88 0.00 4.30
1748 1921 1.651240 CGGCCTCGTCGGAGAAGTTA 61.651 60.000 0.00 0.00 43.27 2.24
1889 2062 6.347402 CGTTCTTGAAGTATTGGTTGTCGAAT 60.347 38.462 0.00 0.00 0.00 3.34
1901 2074 3.508762 CGCCAGTACGTTCTTGAAGTAT 58.491 45.455 0.00 0.00 0.00 2.12
2103 2276 3.693807 TGGTCTAGTAGTGGTTGACGAT 58.306 45.455 0.00 0.00 0.00 3.73
2115 2288 9.391006 GAATAAATTTGTGGTGATGGTCTAGTA 57.609 33.333 0.00 0.00 0.00 1.82
2254 2431 8.516811 ACATACACTAAGAAGTAAGAACAACG 57.483 34.615 0.00 0.00 33.48 4.10
2255 2432 9.472361 TGACATACACTAAGAAGTAAGAACAAC 57.528 33.333 0.00 0.00 33.48 3.32
2285 2463 8.201554 TGTTCTTCTGATTTATACACTCATGC 57.798 34.615 0.00 0.00 0.00 4.06
2299 2477 6.950842 TCCATGTACATTCTGTTCTTCTGAT 58.049 36.000 5.37 0.00 0.00 2.90
2311 2489 9.277783 AGCAAGAAATAGTATCCATGTACATTC 57.722 33.333 5.37 0.00 0.00 2.67
2423 2603 4.850386 AGTGGTAGGGGTTTCTAAACAGAT 59.150 41.667 7.80 0.00 40.63 2.90
2491 2671 1.982073 GAAGGAATTGACGCCGCTGG 61.982 60.000 0.00 0.00 0.00 4.85
2492 2672 1.425428 GAAGGAATTGACGCCGCTG 59.575 57.895 0.00 0.00 0.00 5.18
2493 2673 1.745489 GGAAGGAATTGACGCCGCT 60.745 57.895 0.00 0.00 0.00 5.52
2494 2674 1.582610 TTGGAAGGAATTGACGCCGC 61.583 55.000 0.00 0.00 0.00 6.53
2495 2675 0.878416 TTTGGAAGGAATTGACGCCG 59.122 50.000 0.00 0.00 0.00 6.46
2496 2676 1.611491 TGTTTGGAAGGAATTGACGCC 59.389 47.619 0.00 0.00 0.00 5.68
2497 2677 2.661594 GTGTTTGGAAGGAATTGACGC 58.338 47.619 0.00 0.00 0.00 5.19
2498 2678 2.289547 ACGTGTTTGGAAGGAATTGACG 59.710 45.455 0.00 0.00 0.00 4.35
2499 2679 3.564225 AGACGTGTTTGGAAGGAATTGAC 59.436 43.478 0.00 0.00 0.00 3.18
2500 2680 3.815809 AGACGTGTTTGGAAGGAATTGA 58.184 40.909 0.00 0.00 0.00 2.57
2501 2681 4.290155 CAAGACGTGTTTGGAAGGAATTG 58.710 43.478 0.00 0.00 0.00 2.32
2502 2682 3.317993 CCAAGACGTGTTTGGAAGGAATT 59.682 43.478 19.01 0.00 46.42 2.17
2503 2683 2.884639 CCAAGACGTGTTTGGAAGGAAT 59.115 45.455 19.01 0.00 46.42 3.01
2520 2700 0.521735 GCCCAACTAGCGTTTCCAAG 59.478 55.000 0.00 0.00 0.00 3.61
2544 2724 6.376018 GCCCTTGGTAAACACACTTTCATATA 59.624 38.462 0.00 0.00 0.00 0.86
2547 2727 3.320826 GCCCTTGGTAAACACACTTTCAT 59.679 43.478 0.00 0.00 0.00 2.57
2548 2728 2.691011 GCCCTTGGTAAACACACTTTCA 59.309 45.455 0.00 0.00 0.00 2.69
2552 2732 0.181824 ACGCCCTTGGTAAACACACT 59.818 50.000 0.00 0.00 0.00 3.55
2628 2808 8.050316 AGAATAGATACACCAATTTCAGGGAT 57.950 34.615 0.00 0.00 0.00 3.85
2647 2827 6.767456 AGATGCTGAAATGGGTCTAGAATAG 58.233 40.000 0.00 0.00 41.04 1.73
2648 2828 6.753913 AGATGCTGAAATGGGTCTAGAATA 57.246 37.500 0.00 0.00 0.00 1.75
2649 2829 5.643421 AGATGCTGAAATGGGTCTAGAAT 57.357 39.130 0.00 0.00 0.00 2.40
2650 2830 5.899547 TCTAGATGCTGAAATGGGTCTAGAA 59.100 40.000 7.29 0.00 40.43 2.10
2701 2881 6.764560 GCTTATTTATTACTCCCTCCGTTTGA 59.235 38.462 0.00 0.00 0.00 2.69
2750 2930 2.093553 AGGCGCCTACGGTATGTAAAAA 60.094 45.455 31.86 0.00 40.57 1.94
2751 2931 1.481772 AGGCGCCTACGGTATGTAAAA 59.518 47.619 31.86 0.00 40.57 1.52
2752 2932 1.067516 GAGGCGCCTACGGTATGTAAA 59.932 52.381 32.97 0.00 40.57 2.01
2753 2933 0.670162 GAGGCGCCTACGGTATGTAA 59.330 55.000 32.97 0.00 40.57 2.41
2754 2934 1.509644 CGAGGCGCCTACGGTATGTA 61.510 60.000 32.97 0.00 40.57 2.29
2755 2935 2.842256 CGAGGCGCCTACGGTATGT 61.842 63.158 32.97 3.02 40.57 2.29
2756 2936 2.050351 CGAGGCGCCTACGGTATG 60.050 66.667 32.97 9.49 40.57 2.39
2757 2937 2.517875 ACGAGGCGCCTACGGTAT 60.518 61.111 34.97 21.20 40.57 2.73
2758 2938 3.204827 GACGAGGCGCCTACGGTA 61.205 66.667 34.97 0.00 40.57 4.02
2761 2941 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
2783 2963 1.202722 TCAGTGGGGAGAAAACGTTCC 60.203 52.381 0.00 0.00 33.92 3.62
2784 2964 2.249844 TCAGTGGGGAGAAAACGTTC 57.750 50.000 0.00 0.00 0.00 3.95
2785 2965 2.721425 TTCAGTGGGGAGAAAACGTT 57.279 45.000 0.00 0.00 0.00 3.99
2786 2966 2.504367 CATTCAGTGGGGAGAAAACGT 58.496 47.619 0.00 0.00 0.00 3.99
2787 2967 1.200020 GCATTCAGTGGGGAGAAAACG 59.800 52.381 0.00 0.00 0.00 3.60
2788 2968 1.200020 CGCATTCAGTGGGGAGAAAAC 59.800 52.381 0.00 0.00 37.14 2.43
2789 2969 1.533625 CGCATTCAGTGGGGAGAAAA 58.466 50.000 0.00 0.00 37.14 2.29
2790 2970 0.960364 GCGCATTCAGTGGGGAGAAA 60.960 55.000 0.30 0.00 40.85 2.52
2791 2971 1.377202 GCGCATTCAGTGGGGAGAA 60.377 57.895 0.30 0.00 40.85 2.87
2792 2972 1.913951 ATGCGCATTCAGTGGGGAGA 61.914 55.000 19.28 0.00 43.96 3.71
2793 2973 1.442526 GATGCGCATTCAGTGGGGAG 61.443 60.000 26.12 0.00 43.96 4.30
2794 2974 1.451927 GATGCGCATTCAGTGGGGA 60.452 57.895 26.12 0.00 44.77 4.81
2795 2975 2.827051 CGATGCGCATTCAGTGGGG 61.827 63.158 26.12 3.07 40.85 4.96
2796 2976 2.040213 GACGATGCGCATTCAGTGGG 62.040 60.000 26.12 10.22 43.21 4.61
2797 2977 1.349627 GACGATGCGCATTCAGTGG 59.650 57.895 26.12 6.36 0.00 4.00
2798 2978 1.012998 CGACGATGCGCATTCAGTG 60.013 57.895 26.12 14.19 0.00 3.66
2799 2979 2.167219 CCGACGATGCGCATTCAGT 61.167 57.895 26.12 23.26 0.00 3.41
2800 2980 1.420641 TTCCGACGATGCGCATTCAG 61.421 55.000 26.12 20.26 0.00 3.02
2801 2981 1.016653 TTTCCGACGATGCGCATTCA 61.017 50.000 26.12 0.96 0.00 2.57
2802 2982 0.304705 ATTTCCGACGATGCGCATTC 59.695 50.000 26.12 17.86 0.00 2.67
2803 2983 0.304705 GATTTCCGACGATGCGCATT 59.695 50.000 26.12 9.76 0.00 3.56
2804 2984 1.498865 GGATTTCCGACGATGCGCAT 61.499 55.000 25.66 25.66 0.00 4.73
2805 2985 2.171079 GGATTTCCGACGATGCGCA 61.171 57.895 14.96 14.96 0.00 6.09
2806 2986 1.883084 AGGATTTCCGACGATGCGC 60.883 57.895 0.00 0.00 42.08 6.09
2807 2987 0.527600 TCAGGATTTCCGACGATGCG 60.528 55.000 0.00 0.00 42.08 4.73
2808 2988 1.651987 TTCAGGATTTCCGACGATGC 58.348 50.000 0.00 0.00 42.08 3.91
2809 2989 5.984233 TTATTTCAGGATTTCCGACGATG 57.016 39.130 0.00 0.00 42.08 3.84
2810 2990 6.204882 GGATTTATTTCAGGATTTCCGACGAT 59.795 38.462 0.00 0.00 42.08 3.73
2811 2991 5.526111 GGATTTATTTCAGGATTTCCGACGA 59.474 40.000 0.00 0.00 42.08 4.20
2812 2992 5.295787 TGGATTTATTTCAGGATTTCCGACG 59.704 40.000 0.00 0.00 42.08 5.12
2813 2993 6.693315 TGGATTTATTTCAGGATTTCCGAC 57.307 37.500 0.00 0.00 42.08 4.79
2814 2994 6.942532 CTGGATTTATTTCAGGATTTCCGA 57.057 37.500 0.00 0.00 42.08 4.55
2822 3002 7.596248 CGCATTTATTCCTGGATTTATTTCAGG 59.404 37.037 0.00 0.00 46.91 3.86
2823 3003 8.352201 TCGCATTTATTCCTGGATTTATTTCAG 58.648 33.333 0.00 0.00 0.00 3.02
2824 3004 8.231692 TCGCATTTATTCCTGGATTTATTTCA 57.768 30.769 0.00 0.00 0.00 2.69
2825 3005 7.327032 GCTCGCATTTATTCCTGGATTTATTTC 59.673 37.037 0.00 0.00 0.00 2.17
2826 3006 7.147976 GCTCGCATTTATTCCTGGATTTATTT 58.852 34.615 0.00 0.00 0.00 1.40
2827 3007 6.265196 TGCTCGCATTTATTCCTGGATTTATT 59.735 34.615 0.00 0.00 0.00 1.40
2828 3008 5.769662 TGCTCGCATTTATTCCTGGATTTAT 59.230 36.000 0.00 0.00 0.00 1.40
2829 3009 5.008613 GTGCTCGCATTTATTCCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
2830 3010 3.953612 TGCTCGCATTTATTCCTGGATTT 59.046 39.130 0.00 0.00 0.00 2.17
2831 3011 3.316308 GTGCTCGCATTTATTCCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
2832 3012 2.880890 GTGCTCGCATTTATTCCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
2833 3013 2.288666 GTGCTCGCATTTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
2834 3014 1.334869 GGTGCTCGCATTTATTCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
2835 3015 2.016318 TGGTGCTCGCATTTATTCCTG 58.984 47.619 0.00 0.00 0.00 3.86
2836 3016 2.292267 CTGGTGCTCGCATTTATTCCT 58.708 47.619 0.00 0.00 0.00 3.36
2837 3017 1.334869 CCTGGTGCTCGCATTTATTCC 59.665 52.381 0.00 0.00 0.00 3.01
2838 3018 2.288666 TCCTGGTGCTCGCATTTATTC 58.711 47.619 0.00 0.00 0.00 1.75
2839 3019 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
2840 3020 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
2841 3021 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
2842 3022 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
2843 3023 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
2844 3024 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
2845 3025 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
2846 3026 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
2847 3027 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
2848 3028 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
2849 3029 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
2850 3030 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
2855 3035 1.827245 GCCCAACAGGGTTCAAATCCT 60.827 52.381 2.03 0.00 44.99 3.24
2856 3036 0.608130 GCCCAACAGGGTTCAAATCC 59.392 55.000 2.03 0.00 44.99 3.01
2865 3045 2.006415 TATCCCCAGCCCAACAGGG 61.006 63.158 0.00 0.00 44.86 4.45
2866 3046 1.227383 GTATCCCCAGCCCAACAGG 59.773 63.158 0.00 0.00 39.47 4.00
2867 3047 1.227383 GGTATCCCCAGCCCAACAG 59.773 63.158 0.00 0.00 0.00 3.16
2868 3048 1.542628 TGGTATCCCCAGCCCAACA 60.543 57.895 0.00 0.00 38.72 3.33
2869 3049 1.076995 GTGGTATCCCCAGCCCAAC 60.077 63.158 0.00 0.00 46.45 3.77
2870 3050 1.143329 TTGTGGTATCCCCAGCCCAA 61.143 55.000 0.00 0.00 46.45 4.12
2871 3051 0.923729 ATTGTGGTATCCCCAGCCCA 60.924 55.000 0.00 0.00 46.45 5.36
2872 3052 0.178990 GATTGTGGTATCCCCAGCCC 60.179 60.000 0.00 0.00 46.45 5.19
2873 3053 0.846693 AGATTGTGGTATCCCCAGCC 59.153 55.000 0.00 0.00 46.45 4.85
2874 3054 1.771255 AGAGATTGTGGTATCCCCAGC 59.229 52.381 0.00 0.00 46.45 4.85
2875 3055 3.312890 AGAGAGATTGTGGTATCCCCAG 58.687 50.000 0.00 0.00 46.45 4.45
2876 3056 3.421394 AGAGAGATTGTGGTATCCCCA 57.579 47.619 0.00 0.00 42.51 4.96
2877 3057 4.040584 GGTTAGAGAGATTGTGGTATCCCC 59.959 50.000 0.00 0.00 0.00 4.81
2878 3058 4.654262 TGGTTAGAGAGATTGTGGTATCCC 59.346 45.833 0.00 0.00 0.00 3.85
2879 3059 5.871396 TGGTTAGAGAGATTGTGGTATCC 57.129 43.478 0.00 0.00 0.00 2.59
2880 3060 7.055667 TGATGGTTAGAGAGATTGTGGTATC 57.944 40.000 0.00 0.00 0.00 2.24
2881 3061 7.437713 TTGATGGTTAGAGAGATTGTGGTAT 57.562 36.000 0.00 0.00 0.00 2.73
2882 3062 6.867519 TTGATGGTTAGAGAGATTGTGGTA 57.132 37.500 0.00 0.00 0.00 3.25
2883 3063 5.762179 TTGATGGTTAGAGAGATTGTGGT 57.238 39.130 0.00 0.00 0.00 4.16
2884 3064 6.825213 TGATTTGATGGTTAGAGAGATTGTGG 59.175 38.462 0.00 0.00 0.00 4.17
2885 3065 7.335171 TGTGATTTGATGGTTAGAGAGATTGTG 59.665 37.037 0.00 0.00 0.00 3.33
2886 3066 7.397221 TGTGATTTGATGGTTAGAGAGATTGT 58.603 34.615 0.00 0.00 0.00 2.71
2887 3067 7.012138 CCTGTGATTTGATGGTTAGAGAGATTG 59.988 40.741 0.00 0.00 0.00 2.67
2888 3068 7.052873 CCTGTGATTTGATGGTTAGAGAGATT 58.947 38.462 0.00 0.00 0.00 2.40
2889 3069 6.157645 ACCTGTGATTTGATGGTTAGAGAGAT 59.842 38.462 0.00 0.00 0.00 2.75
2890 3070 5.485353 ACCTGTGATTTGATGGTTAGAGAGA 59.515 40.000 0.00 0.00 0.00 3.10
2891 3071 5.738909 ACCTGTGATTTGATGGTTAGAGAG 58.261 41.667 0.00 0.00 0.00 3.20
2892 3072 5.762179 ACCTGTGATTTGATGGTTAGAGA 57.238 39.130 0.00 0.00 0.00 3.10
2893 3073 5.124457 CCAACCTGTGATTTGATGGTTAGAG 59.876 44.000 0.00 0.00 38.76 2.43
2894 3074 5.009631 CCAACCTGTGATTTGATGGTTAGA 58.990 41.667 0.00 0.00 38.76 2.10
2895 3075 4.766891 ACCAACCTGTGATTTGATGGTTAG 59.233 41.667 0.00 0.00 38.76 2.34
2896 3076 4.735369 ACCAACCTGTGATTTGATGGTTA 58.265 39.130 0.00 0.00 38.76 2.85
2897 3077 3.575805 ACCAACCTGTGATTTGATGGTT 58.424 40.909 0.00 0.00 41.12 3.67
2898 3078 3.243359 ACCAACCTGTGATTTGATGGT 57.757 42.857 0.00 0.00 34.98 3.55
2899 3079 3.366273 CGAACCAACCTGTGATTTGATGG 60.366 47.826 0.00 0.00 0.00 3.51
2900 3080 3.825308 CGAACCAACCTGTGATTTGATG 58.175 45.455 0.00 0.00 0.00 3.07
2901 3081 2.228822 GCGAACCAACCTGTGATTTGAT 59.771 45.455 0.00 0.00 0.00 2.57
2902 3082 1.606668 GCGAACCAACCTGTGATTTGA 59.393 47.619 0.00 0.00 0.00 2.69
2903 3083 1.608590 AGCGAACCAACCTGTGATTTG 59.391 47.619 0.00 0.00 0.00 2.32
2904 3084 1.981256 AGCGAACCAACCTGTGATTT 58.019 45.000 0.00 0.00 0.00 2.17
2905 3085 2.851263 TAGCGAACCAACCTGTGATT 57.149 45.000 0.00 0.00 0.00 2.57
2906 3086 2.236146 TCATAGCGAACCAACCTGTGAT 59.764 45.455 0.00 0.00 0.00 3.06
2907 3087 1.621317 TCATAGCGAACCAACCTGTGA 59.379 47.619 0.00 0.00 0.00 3.58
2908 3088 1.732259 GTCATAGCGAACCAACCTGTG 59.268 52.381 0.00 0.00 0.00 3.66
2909 3089 1.346395 TGTCATAGCGAACCAACCTGT 59.654 47.619 0.00 0.00 0.00 4.00
2910 3090 2.093306 TGTCATAGCGAACCAACCTG 57.907 50.000 0.00 0.00 0.00 4.00
2911 3091 4.481368 TTATGTCATAGCGAACCAACCT 57.519 40.909 0.00 0.00 0.00 3.50
2912 3092 5.123344 ACTTTTATGTCATAGCGAACCAACC 59.877 40.000 0.00 0.00 0.00 3.77
2913 3093 6.021596 CACTTTTATGTCATAGCGAACCAAC 58.978 40.000 0.00 0.00 0.00 3.77
2914 3094 5.703592 ACACTTTTATGTCATAGCGAACCAA 59.296 36.000 0.00 0.00 0.00 3.67
2915 3095 5.242434 ACACTTTTATGTCATAGCGAACCA 58.758 37.500 0.00 0.00 0.00 3.67
2916 3096 5.796350 ACACTTTTATGTCATAGCGAACC 57.204 39.130 0.00 0.00 0.00 3.62
2917 3097 5.508224 GCAACACTTTTATGTCATAGCGAAC 59.492 40.000 0.00 0.00 30.55 3.95
2918 3098 5.627172 GCAACACTTTTATGTCATAGCGAA 58.373 37.500 0.00 0.00 30.55 4.70
2919 3099 4.201676 CGCAACACTTTTATGTCATAGCGA 60.202 41.667 11.35 0.00 39.61 4.93
2920 3100 4.021822 CGCAACACTTTTATGTCATAGCG 58.978 43.478 4.97 4.97 35.12 4.26
2921 3101 3.786048 GCGCAACACTTTTATGTCATAGC 59.214 43.478 0.30 0.00 30.55 2.97
2922 3102 4.968626 TGCGCAACACTTTTATGTCATAG 58.031 39.130 8.16 0.00 30.55 2.23
2923 3103 5.363979 TTGCGCAACACTTTTATGTCATA 57.636 34.783 21.02 0.00 30.55 2.15
2924 3104 3.913548 TGCGCAACACTTTTATGTCAT 57.086 38.095 8.16 0.00 30.55 3.06
2925 3105 3.549827 CCTTGCGCAACACTTTTATGTCA 60.550 43.478 21.02 0.00 30.55 3.58
2926 3106 2.979813 CCTTGCGCAACACTTTTATGTC 59.020 45.455 21.02 0.00 30.55 3.06
2927 3107 2.862140 GCCTTGCGCAACACTTTTATGT 60.862 45.455 21.02 0.00 37.47 2.29
2928 3108 1.720852 GCCTTGCGCAACACTTTTATG 59.279 47.619 21.02 5.96 37.47 1.90
2929 3109 2.064573 GCCTTGCGCAACACTTTTAT 57.935 45.000 21.02 0.00 37.47 1.40
2930 3110 3.560826 GCCTTGCGCAACACTTTTA 57.439 47.368 21.02 0.00 37.47 1.52
2962 3142 8.012957 AGTACACAGACTTATCCTAAGATTGG 57.987 38.462 0.00 0.00 33.67 3.16
3036 3216 4.546829 GTGTTGACAGATTACACCCCTA 57.453 45.455 0.00 0.00 36.93 3.53
3042 3222 3.395639 GAACCGGTGTTGACAGATTACA 58.604 45.455 8.52 0.00 33.97 2.41
3046 3226 0.677288 TCGAACCGGTGTTGACAGAT 59.323 50.000 8.52 0.00 33.97 2.90
3063 3243 3.126831 GGAGGTGACATTGCTTCTATCG 58.873 50.000 0.00 0.00 0.00 2.92
3088 3268 4.410228 TGAGGAGAACTAAGGCAATGCTAT 59.590 41.667 4.82 0.00 0.00 2.97
3093 3273 7.284034 CACATAATTGAGGAGAACTAAGGCAAT 59.716 37.037 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.