Multiple sequence alignment - TraesCS1B01G094900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G094900 chr1B 100.000 2391 0 0 1 2391 97809872 97807482 0.000000e+00 4416.0
1 TraesCS1B01G094900 chr1B 87.268 1186 108 14 819 1986 64750940 64752100 0.000000e+00 1314.0
2 TraesCS1B01G094900 chr1B 94.366 355 17 3 1987 2338 334106199 334105845 2.090000e-150 542.0
3 TraesCS1B01G094900 chr1B 83.239 352 38 12 1640 1988 655454101 655454434 1.070000e-78 303.0
4 TraesCS1B01G094900 chr1B 94.643 56 3 0 2336 2391 654990278 654990223 1.180000e-13 87.9
5 TraesCS1B01G094900 chr2B 93.890 1964 91 14 29 1986 763316952 763315012 0.000000e+00 2935.0
6 TraesCS1B01G094900 chr2B 94.302 351 17 3 1987 2334 395551564 395551214 3.500000e-148 534.0
7 TraesCS1B01G094900 chr2B 94.302 351 17 3 1987 2334 665486789 665487139 3.500000e-148 534.0
8 TraesCS1B01G094900 chr2B 93.478 138 8 1 1856 1992 27191720 27191583 1.120000e-48 204.0
9 TraesCS1B01G094900 chr2B 100.000 28 0 0 1826 1853 16365245 16365272 4.000000e-03 52.8
10 TraesCS1B01G094900 chr1A 91.002 1867 141 15 29 1874 145815195 145813335 0.000000e+00 2492.0
11 TraesCS1B01G094900 chr1A 100.000 55 0 0 119 173 378940358 378940412 4.200000e-18 102.0
12 TraesCS1B01G094900 chr1A 100.000 55 0 0 119 173 378973061 378973115 4.200000e-18 102.0
13 TraesCS1B01G094900 chr1A 94.643 56 3 0 2336 2391 105474929 105474874 1.180000e-13 87.9
14 TraesCS1B01G094900 chr5A 90.105 1708 132 14 299 1986 288890124 288891814 0.000000e+00 2183.0
15 TraesCS1B01G094900 chr5A 86.949 1203 92 19 550 1734 611706759 611707914 0.000000e+00 1291.0
16 TraesCS1B01G094900 chr5A 93.464 153 10 0 70 222 611696367 611696519 6.650000e-56 228.0
17 TraesCS1B01G094900 chr2A 89.809 1727 130 15 245 1952 188605476 188607175 0.000000e+00 2172.0
18 TraesCS1B01G094900 chr2A 94.382 89 4 1 70 158 188604018 188604105 4.150000e-28 135.0
19 TraesCS1B01G094900 chr5D 90.190 1682 118 16 321 1986 399707064 399705414 0.000000e+00 2148.0
20 TraesCS1B01G094900 chr5D 97.297 74 2 0 251 324 399708814 399708741 2.500000e-25 126.0
21 TraesCS1B01G094900 chr5D 89.062 64 2 1 70 128 554362520 554362583 9.170000e-10 75.0
22 TraesCS1B01G094900 chr3A 89.085 1759 135 21 251 1989 493559442 493561163 0.000000e+00 2132.0
23 TraesCS1B01G094900 chr3A 93.662 142 9 0 81 222 493559085 493559226 1.860000e-51 213.0
24 TraesCS1B01G094900 chr7B 91.020 1392 100 11 299 1667 694526886 694525497 0.000000e+00 1855.0
25 TraesCS1B01G094900 chr7B 89.483 1179 101 11 680 1838 747107425 747108600 0.000000e+00 1469.0
26 TraesCS1B01G094900 chr7B 94.318 352 16 3 1987 2334 279361901 279361550 9.730000e-149 536.0
27 TraesCS1B01G094900 chr4D 89.073 1327 91 25 680 1986 46138594 46137302 0.000000e+00 1598.0
28 TraesCS1B01G094900 chr6B 88.737 1314 102 18 695 1986 148307042 148305753 0.000000e+00 1565.0
29 TraesCS1B01G094900 chr6B 94.834 542 26 2 299 838 270898240 270898781 0.000000e+00 845.0
30 TraesCS1B01G094900 chr6B 95.184 353 14 3 1987 2336 17480069 17480421 2.690000e-154 555.0
31 TraesCS1B01G094900 chr6B 94.872 351 15 3 1987 2334 581998438 581998788 1.620000e-151 545.0
32 TraesCS1B01G094900 chr6B 85.311 354 31 6 1636 1986 285562470 285562805 1.760000e-91 346.0
33 TraesCS1B01G094900 chr6B 85.387 349 30 10 1640 1986 670369705 670370034 2.280000e-90 342.0
34 TraesCS1B01G094900 chr6B 92.857 140 10 0 1847 1986 564722362 564722501 1.120000e-48 204.0
35 TraesCS1B01G094900 chr6B 96.429 56 2 0 2336 2391 196362130 196362185 2.530000e-15 93.5
36 TraesCS1B01G094900 chr4B 88.209 1323 101 26 680 1986 455979296 455980579 0.000000e+00 1528.0
37 TraesCS1B01G094900 chr4B 94.366 355 16 3 1987 2337 39177933 39177579 2.090000e-150 542.0
38 TraesCS1B01G094900 chr4B 83.333 324 37 9 1674 1995 238179500 238179808 1.400000e-72 283.0
39 TraesCS1B01G094900 chr4B 96.429 56 2 0 2336 2391 10322091 10322146 2.530000e-15 93.5
40 TraesCS1B01G094900 chr4B 94.643 56 3 0 2336 2391 71406746 71406801 1.180000e-13 87.9
41 TraesCS1B01G094900 chr4B 94.643 56 3 0 2336 2391 110395116 110395171 1.180000e-13 87.9
42 TraesCS1B01G094900 chr4B 94.643 56 3 0 2336 2391 126897379 126897324 1.180000e-13 87.9
43 TraesCS1B01G094900 chr2D 92.019 1065 59 13 680 1725 582871609 582872666 0.000000e+00 1472.0
44 TraesCS1B01G094900 chr2D 80.997 321 34 9 1673 1990 208320705 208320409 1.850000e-56 230.0
45 TraesCS1B01G094900 chr6A 89.430 842 65 9 1151 1986 584692 585515 0.000000e+00 1040.0
46 TraesCS1B01G094900 chrUn 91.106 461 40 1 220 680 381946784 381947243 7.260000e-175 623.0
47 TraesCS1B01G094900 chr5B 94.571 350 15 4 1988 2334 537660355 537660703 2.700000e-149 538.0
48 TraesCS1B01G094900 chr5B 94.318 352 17 3 1987 2335 572709723 572710074 9.730000e-149 536.0
49 TraesCS1B01G094900 chr7A 80.180 333 45 15 1667 1995 595558683 595558998 1.850000e-56 230.0
50 TraesCS1B01G094900 chr7D 85.268 224 16 4 1765 1987 561631821 561631614 5.180000e-52 215.0
51 TraesCS1B01G094900 chr4A 100.000 55 0 0 119 173 52152670 52152616 4.200000e-18 102.0
52 TraesCS1B01G094900 chr3B 100.000 55 0 0 119 173 228792280 228792226 4.200000e-18 102.0
53 TraesCS1B01G094900 chr3B 96.364 55 2 0 2337 2391 36112002 36112056 9.100000e-15 91.6
54 TraesCS1B01G094900 chr3B 96.364 55 2 0 2336 2390 321659737 321659683 9.100000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G094900 chr1B 97807482 97809872 2390 True 4416.0 4416 100.0000 1 2391 1 chr1B.!!$R1 2390
1 TraesCS1B01G094900 chr1B 64750940 64752100 1160 False 1314.0 1314 87.2680 819 1986 1 chr1B.!!$F1 1167
2 TraesCS1B01G094900 chr2B 763315012 763316952 1940 True 2935.0 2935 93.8900 29 1986 1 chr2B.!!$R3 1957
3 TraesCS1B01G094900 chr1A 145813335 145815195 1860 True 2492.0 2492 91.0020 29 1874 1 chr1A.!!$R2 1845
4 TraesCS1B01G094900 chr5A 288890124 288891814 1690 False 2183.0 2183 90.1050 299 1986 1 chr5A.!!$F1 1687
5 TraesCS1B01G094900 chr5A 611706759 611707914 1155 False 1291.0 1291 86.9490 550 1734 1 chr5A.!!$F3 1184
6 TraesCS1B01G094900 chr2A 188604018 188607175 3157 False 1153.5 2172 92.0955 70 1952 2 chr2A.!!$F1 1882
7 TraesCS1B01G094900 chr5D 399705414 399708814 3400 True 1137.0 2148 93.7435 251 1986 2 chr5D.!!$R1 1735
8 TraesCS1B01G094900 chr3A 493559085 493561163 2078 False 1172.5 2132 91.3735 81 1989 2 chr3A.!!$F1 1908
9 TraesCS1B01G094900 chr7B 694525497 694526886 1389 True 1855.0 1855 91.0200 299 1667 1 chr7B.!!$R2 1368
10 TraesCS1B01G094900 chr7B 747107425 747108600 1175 False 1469.0 1469 89.4830 680 1838 1 chr7B.!!$F1 1158
11 TraesCS1B01G094900 chr4D 46137302 46138594 1292 True 1598.0 1598 89.0730 680 1986 1 chr4D.!!$R1 1306
12 TraesCS1B01G094900 chr6B 148305753 148307042 1289 True 1565.0 1565 88.7370 695 1986 1 chr6B.!!$R1 1291
13 TraesCS1B01G094900 chr6B 270898240 270898781 541 False 845.0 845 94.8340 299 838 1 chr6B.!!$F3 539
14 TraesCS1B01G094900 chr4B 455979296 455980579 1283 False 1528.0 1528 88.2090 680 1986 1 chr4B.!!$F5 1306
15 TraesCS1B01G094900 chr2D 582871609 582872666 1057 False 1472.0 1472 92.0190 680 1725 1 chr2D.!!$F1 1045
16 TraesCS1B01G094900 chr6A 584692 585515 823 False 1040.0 1040 89.4300 1151 1986 1 chr6A.!!$F1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.043637 ATCCCCGAACAGGAAGGGTA 59.956 55.0 0.0 0.0 45.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 4812 0.035247 TTTATACCCGTGTGCCACCC 60.035 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.043637 ATCCCCGAACAGGAAGGGTA 59.956 55.000 0.00 0.00 45.00 3.69
79 80 1.141665 GTGCGATTCCCCATTTGCC 59.858 57.895 0.00 0.00 0.00 4.52
173 1271 7.775093 TGCTTCACTCTGTTTATTTATGGCTAT 59.225 33.333 0.00 0.00 0.00 2.97
249 1535 8.248904 TGGAGAAATTCCTTCTTTTGATGAAA 57.751 30.769 0.00 0.00 44.82 2.69
367 3333 4.517832 ACCGGATTCAGTTTTCTGTTTACC 59.482 41.667 9.46 0.00 46.98 2.85
479 3445 4.142271 GGCATTGTCCGATCAATTTTACCA 60.142 41.667 0.00 0.00 36.10 3.25
506 3472 3.758023 CCTGAACACCATAGATTTGTGCA 59.242 43.478 0.00 0.00 33.30 4.57
596 3562 6.782988 TCAGTTTTATTTTAACATGGACCCCA 59.217 34.615 0.00 0.00 38.19 4.96
619 3586 0.810648 CATAAACACCGGTGCAGCAT 59.189 50.000 34.26 18.67 0.00 3.79
643 3610 3.676324 GCCGTATGTACAAGAAGCAGAGT 60.676 47.826 0.00 0.00 0.00 3.24
908 3877 9.874205 TCTTTTTCACTGATTGTCTTTTTCATT 57.126 25.926 0.00 0.00 0.00 2.57
943 3912 7.598493 CCACATTATTTTTCCGTGTCATTCTTT 59.402 33.333 0.00 0.00 0.00 2.52
944 3913 8.977505 CACATTATTTTTCCGTGTCATTCTTTT 58.022 29.630 0.00 0.00 0.00 2.27
945 3914 8.977505 ACATTATTTTTCCGTGTCATTCTTTTG 58.022 29.630 0.00 0.00 0.00 2.44
946 3915 9.190858 CATTATTTTTCCGTGTCATTCTTTTGA 57.809 29.630 0.00 0.00 0.00 2.69
947 3916 9.757227 ATTATTTTTCCGTGTCATTCTTTTGAA 57.243 25.926 0.00 0.00 43.30 2.69
948 3917 7.698836 ATTTTTCCGTGTCATTCTTTTGAAG 57.301 32.000 0.00 0.00 42.30 3.02
949 3918 6.443934 TTTTCCGTGTCATTCTTTTGAAGA 57.556 33.333 0.00 0.00 42.30 2.87
1171 4175 1.942657 CTTGATTCGGTATGTGGCCAG 59.057 52.381 5.11 0.00 0.00 4.85
1317 4325 2.675772 GGAGAGGGACGTGACGGT 60.676 66.667 10.66 0.00 0.00 4.83
1406 4414 1.014564 GTAGTTGCAGGCCACGAGAC 61.015 60.000 5.01 0.00 0.00 3.36
1466 4474 6.572519 CAATTTTTGGATCGGACCATAACAT 58.427 36.000 2.69 0.76 39.82 2.71
1608 4622 8.854614 ATATGAATTATACAAGAGTTGCCTCC 57.145 34.615 0.00 0.00 38.58 4.30
1610 4624 6.662755 TGAATTATACAAGAGTTGCCTCCAT 58.337 36.000 0.00 0.00 38.58 3.41
1784 4814 5.357257 ACACGCTACTACTATTTTGATGGG 58.643 41.667 0.00 0.00 0.00 4.00
1785 4815 5.105064 ACACGCTACTACTATTTTGATGGGT 60.105 40.000 0.00 0.00 0.00 4.51
1787 4817 4.750098 CGCTACTACTATTTTGATGGGTGG 59.250 45.833 0.00 0.00 0.00 4.61
1788 4818 4.515567 GCTACTACTATTTTGATGGGTGGC 59.484 45.833 0.00 0.00 0.00 5.01
1789 4819 4.584638 ACTACTATTTTGATGGGTGGCA 57.415 40.909 0.00 0.00 0.00 4.92
1867 4912 9.715123 GTTAGTAGTAGCTTTGTTAGTAGTAGC 57.285 37.037 0.00 0.00 0.00 3.58
1909 4955 7.623925 GCTACTACTAACTATTAGCTGTAGCGG 60.624 44.444 22.86 10.87 46.05 5.52
1959 5005 0.251073 AGTAGCCATTTTACCCGCGT 59.749 50.000 4.92 0.00 0.00 6.01
1986 5032 5.087391 AGTAGCCTTTTTCCTAGTAGTGC 57.913 43.478 0.00 0.00 0.00 4.40
1987 5033 4.778427 AGTAGCCTTTTTCCTAGTAGTGCT 59.222 41.667 0.00 0.00 0.00 4.40
1989 5035 4.327680 AGCCTTTTTCCTAGTAGTGCTTG 58.672 43.478 0.00 0.00 0.00 4.01
1990 5036 3.440522 GCCTTTTTCCTAGTAGTGCTTGG 59.559 47.826 2.32 2.32 40.73 3.61
1991 5037 4.010349 CCTTTTTCCTAGTAGTGCTTGGG 58.990 47.826 8.70 1.84 39.97 4.12
1992 5038 4.506802 CCTTTTTCCTAGTAGTGCTTGGGT 60.507 45.833 8.70 0.00 39.97 4.51
1993 5039 3.695830 TTTCCTAGTAGTGCTTGGGTG 57.304 47.619 8.70 0.00 39.97 4.61
1994 5040 1.568504 TCCTAGTAGTGCTTGGGTGG 58.431 55.000 8.70 0.00 39.97 4.61
1995 5041 1.078159 TCCTAGTAGTGCTTGGGTGGA 59.922 52.381 8.70 0.00 39.97 4.02
1996 5042 1.482593 CCTAGTAGTGCTTGGGTGGAG 59.517 57.143 0.76 0.00 36.62 3.86
1997 5043 0.902531 TAGTAGTGCTTGGGTGGAGC 59.097 55.000 0.00 0.00 40.53 4.70
1998 5044 1.377333 GTAGTGCTTGGGTGGAGCC 60.377 63.158 0.00 0.00 39.38 4.70
2010 5056 3.462678 GGAGCCCTCCGTGGACTC 61.463 72.222 0.00 0.50 40.36 3.36
2011 5057 3.827898 GAGCCCTCCGTGGACTCG 61.828 72.222 0.00 0.00 38.35 4.18
2029 5075 2.202703 CGGAGCCGTTACCCTTCG 60.203 66.667 0.00 0.00 34.35 3.79
2030 5076 2.976356 GGAGCCGTTACCCTTCGT 59.024 61.111 0.00 0.00 0.00 3.85
2031 5077 1.447314 GGAGCCGTTACCCTTCGTG 60.447 63.158 0.00 0.00 0.00 4.35
2032 5078 1.447314 GAGCCGTTACCCTTCGTGG 60.447 63.158 0.00 0.00 0.00 4.94
2043 5089 1.797025 CCTTCGTGGGTTGAAGTCTC 58.203 55.000 2.47 0.00 40.96 3.36
2044 5090 1.608283 CCTTCGTGGGTTGAAGTCTCC 60.608 57.143 2.47 0.00 40.96 3.71
2045 5091 1.070134 CTTCGTGGGTTGAAGTCTCCA 59.930 52.381 0.00 0.00 38.39 3.86
2046 5092 1.348064 TCGTGGGTTGAAGTCTCCAT 58.652 50.000 0.00 0.00 0.00 3.41
2047 5093 1.275291 TCGTGGGTTGAAGTCTCCATC 59.725 52.381 0.00 0.00 0.00 3.51
2048 5094 1.001974 CGTGGGTTGAAGTCTCCATCA 59.998 52.381 0.00 0.00 0.00 3.07
2049 5095 2.549992 CGTGGGTTGAAGTCTCCATCAA 60.550 50.000 0.00 0.00 33.37 2.57
2053 5099 3.795561 GTTGAAGTCTCCATCAACGTG 57.204 47.619 3.24 0.00 44.01 4.49
2054 5100 2.455674 TGAAGTCTCCATCAACGTGG 57.544 50.000 0.00 0.00 40.76 4.94
2055 5101 1.967779 TGAAGTCTCCATCAACGTGGA 59.032 47.619 0.00 0.00 45.78 4.02
2056 5102 2.567169 TGAAGTCTCCATCAACGTGGAT 59.433 45.455 0.00 0.00 46.67 3.41
2057 5103 2.680312 AGTCTCCATCAACGTGGATG 57.320 50.000 23.72 23.72 46.67 3.51
2058 5104 1.902508 AGTCTCCATCAACGTGGATGT 59.097 47.619 27.21 9.34 46.67 3.06
2059 5105 3.096852 AGTCTCCATCAACGTGGATGTA 58.903 45.455 27.21 14.32 46.67 2.29
2060 5106 3.119101 AGTCTCCATCAACGTGGATGTAC 60.119 47.826 27.21 21.39 46.67 2.90
2061 5107 2.159296 TCTCCATCAACGTGGATGTACG 60.159 50.000 27.21 14.90 46.67 3.67
2062 5108 1.819903 TCCATCAACGTGGATGTACGA 59.180 47.619 27.21 16.74 46.46 3.43
2063 5109 2.429250 TCCATCAACGTGGATGTACGAT 59.571 45.455 27.21 0.00 46.46 3.73
2064 5110 3.633065 TCCATCAACGTGGATGTACGATA 59.367 43.478 27.21 6.69 46.46 2.92
2065 5111 3.981416 CCATCAACGTGGATGTACGATAG 59.019 47.826 27.21 9.84 46.46 2.08
2066 5112 3.074504 TCAACGTGGATGTACGATAGC 57.925 47.619 5.23 0.00 46.46 2.97
2067 5113 2.424246 TCAACGTGGATGTACGATAGCA 59.576 45.455 5.23 0.00 46.46 3.49
2068 5114 2.486951 ACGTGGATGTACGATAGCAC 57.513 50.000 5.23 0.00 46.46 4.40
2069 5115 1.066605 ACGTGGATGTACGATAGCACC 59.933 52.381 5.23 0.00 46.46 5.01
2070 5116 1.066454 CGTGGATGTACGATAGCACCA 59.934 52.381 0.00 0.00 46.46 4.17
2071 5117 2.470821 GTGGATGTACGATAGCACCAC 58.529 52.381 0.00 0.00 39.20 4.16
2072 5118 1.411246 TGGATGTACGATAGCACCACC 59.589 52.381 0.00 0.00 42.67 4.61
2073 5119 1.687123 GGATGTACGATAGCACCACCT 59.313 52.381 0.00 0.00 42.67 4.00
2074 5120 2.889045 GGATGTACGATAGCACCACCTA 59.111 50.000 0.00 0.00 42.67 3.08
2075 5121 3.510360 GGATGTACGATAGCACCACCTAT 59.490 47.826 0.00 0.00 42.67 2.57
2076 5122 4.380655 GGATGTACGATAGCACCACCTATC 60.381 50.000 0.00 0.00 40.05 2.08
2082 5128 2.973694 TAGCACCACCTATCGAAACC 57.026 50.000 0.00 0.00 0.00 3.27
2083 5129 0.981183 AGCACCACCTATCGAAACCA 59.019 50.000 0.00 0.00 0.00 3.67
2084 5130 1.559682 AGCACCACCTATCGAAACCAT 59.440 47.619 0.00 0.00 0.00 3.55
2085 5131 1.670811 GCACCACCTATCGAAACCATG 59.329 52.381 0.00 0.00 0.00 3.66
2086 5132 2.288666 CACCACCTATCGAAACCATGG 58.711 52.381 11.19 11.19 0.00 3.66
2087 5133 1.211949 ACCACCTATCGAAACCATGGG 59.788 52.381 18.09 0.00 0.00 4.00
2088 5134 1.211949 CCACCTATCGAAACCATGGGT 59.788 52.381 18.09 6.57 35.57 4.51
2089 5135 2.436542 CCACCTATCGAAACCATGGGTA 59.563 50.000 18.09 0.00 33.52 3.69
2090 5136 3.118186 CCACCTATCGAAACCATGGGTAA 60.118 47.826 18.09 0.00 33.52 2.85
2091 5137 4.519213 CACCTATCGAAACCATGGGTAAA 58.481 43.478 18.09 0.00 33.52 2.01
2092 5138 4.944930 CACCTATCGAAACCATGGGTAAAA 59.055 41.667 18.09 0.00 33.52 1.52
2093 5139 5.416326 CACCTATCGAAACCATGGGTAAAAA 59.584 40.000 18.09 0.00 33.52 1.94
2112 5158 5.529581 AAAAATCACCGTGTCTCCAAATT 57.470 34.783 0.00 0.00 0.00 1.82
2113 5159 4.503741 AAATCACCGTGTCTCCAAATTG 57.496 40.909 0.00 0.00 0.00 2.32
2114 5160 1.234821 TCACCGTGTCTCCAAATTGC 58.765 50.000 0.00 0.00 0.00 3.56
2115 5161 1.202758 TCACCGTGTCTCCAAATTGCT 60.203 47.619 0.00 0.00 0.00 3.91
2116 5162 1.608590 CACCGTGTCTCCAAATTGCTT 59.391 47.619 0.00 0.00 0.00 3.91
2117 5163 2.034558 CACCGTGTCTCCAAATTGCTTT 59.965 45.455 0.00 0.00 0.00 3.51
2118 5164 2.034558 ACCGTGTCTCCAAATTGCTTTG 59.965 45.455 0.00 0.00 41.22 2.77
2119 5165 2.293122 CCGTGTCTCCAAATTGCTTTGA 59.707 45.455 0.22 0.00 43.71 2.69
2120 5166 3.243367 CCGTGTCTCCAAATTGCTTTGAA 60.243 43.478 0.22 0.00 43.71 2.69
2121 5167 4.358851 CGTGTCTCCAAATTGCTTTGAAA 58.641 39.130 0.22 0.00 43.71 2.69
2122 5168 4.984161 CGTGTCTCCAAATTGCTTTGAAAT 59.016 37.500 0.22 0.00 43.71 2.17
2123 5169 5.117592 CGTGTCTCCAAATTGCTTTGAAATC 59.882 40.000 0.22 0.00 43.71 2.17
2124 5170 6.218746 GTGTCTCCAAATTGCTTTGAAATCT 58.781 36.000 0.22 0.00 43.71 2.40
2125 5171 6.364435 GTGTCTCCAAATTGCTTTGAAATCTC 59.636 38.462 0.22 0.00 43.71 2.75
2126 5172 5.866092 GTCTCCAAATTGCTTTGAAATCTCC 59.134 40.000 0.22 0.00 43.71 3.71
2127 5173 5.539574 TCTCCAAATTGCTTTGAAATCTCCA 59.460 36.000 0.22 0.00 43.71 3.86
2128 5174 6.041865 TCTCCAAATTGCTTTGAAATCTCCAA 59.958 34.615 0.22 0.00 43.71 3.53
2129 5175 6.590068 TCCAAATTGCTTTGAAATCTCCAAA 58.410 32.000 0.22 0.00 43.71 3.28
2130 5176 6.482973 TCCAAATTGCTTTGAAATCTCCAAAC 59.517 34.615 0.22 0.00 43.71 2.93
2131 5177 6.293571 CCAAATTGCTTTGAAATCTCCAAACC 60.294 38.462 0.22 0.00 43.71 3.27
2132 5178 4.335400 TTGCTTTGAAATCTCCAAACCC 57.665 40.909 0.00 0.00 31.13 4.11
2133 5179 3.575805 TGCTTTGAAATCTCCAAACCCT 58.424 40.909 0.00 0.00 31.13 4.34
2134 5180 3.966665 TGCTTTGAAATCTCCAAACCCTT 59.033 39.130 0.00 0.00 31.13 3.95
2135 5181 4.039124 TGCTTTGAAATCTCCAAACCCTTC 59.961 41.667 0.00 0.00 31.13 3.46
2136 5182 4.561530 GCTTTGAAATCTCCAAACCCTTCC 60.562 45.833 0.00 0.00 31.13 3.46
2137 5183 3.169512 TGAAATCTCCAAACCCTTCCC 57.830 47.619 0.00 0.00 0.00 3.97
2138 5184 2.721906 TGAAATCTCCAAACCCTTCCCT 59.278 45.455 0.00 0.00 0.00 4.20
2139 5185 3.142028 TGAAATCTCCAAACCCTTCCCTT 59.858 43.478 0.00 0.00 0.00 3.95
2140 5186 4.355588 TGAAATCTCCAAACCCTTCCCTTA 59.644 41.667 0.00 0.00 0.00 2.69
2141 5187 4.317530 AATCTCCAAACCCTTCCCTTAC 57.682 45.455 0.00 0.00 0.00 2.34
2142 5188 2.708759 TCTCCAAACCCTTCCCTTACA 58.291 47.619 0.00 0.00 0.00 2.41
2143 5189 3.265489 TCTCCAAACCCTTCCCTTACAT 58.735 45.455 0.00 0.00 0.00 2.29
2144 5190 3.660669 TCTCCAAACCCTTCCCTTACATT 59.339 43.478 0.00 0.00 0.00 2.71
2145 5191 4.017126 CTCCAAACCCTTCCCTTACATTC 58.983 47.826 0.00 0.00 0.00 2.67
2146 5192 3.660669 TCCAAACCCTTCCCTTACATTCT 59.339 43.478 0.00 0.00 0.00 2.40
2147 5193 4.107311 TCCAAACCCTTCCCTTACATTCTT 59.893 41.667 0.00 0.00 0.00 2.52
2148 5194 4.220602 CCAAACCCTTCCCTTACATTCTTG 59.779 45.833 0.00 0.00 0.00 3.02
2149 5195 3.087370 ACCCTTCCCTTACATTCTTGC 57.913 47.619 0.00 0.00 0.00 4.01
2150 5196 2.378547 ACCCTTCCCTTACATTCTTGCA 59.621 45.455 0.00 0.00 0.00 4.08
2151 5197 3.181423 ACCCTTCCCTTACATTCTTGCAA 60.181 43.478 0.00 0.00 0.00 4.08
2152 5198 3.445096 CCCTTCCCTTACATTCTTGCAAG 59.555 47.826 20.81 20.81 0.00 4.01
2153 5199 4.082125 CCTTCCCTTACATTCTTGCAAGT 58.918 43.478 25.19 10.18 0.00 3.16
2154 5200 4.524328 CCTTCCCTTACATTCTTGCAAGTT 59.476 41.667 25.19 12.05 0.00 2.66
2155 5201 5.452078 TTCCCTTACATTCTTGCAAGTTG 57.548 39.130 25.19 23.43 0.00 3.16
2156 5202 3.255642 TCCCTTACATTCTTGCAAGTTGC 59.744 43.478 25.19 21.17 45.29 4.17
2170 5216 4.961511 GCAAGTTGCATGCTTTATTTTCC 58.038 39.130 22.90 0.00 44.26 3.13
2171 5217 4.451774 GCAAGTTGCATGCTTTATTTTCCA 59.548 37.500 22.90 0.00 44.26 3.53
2172 5218 5.615325 GCAAGTTGCATGCTTTATTTTCCAC 60.615 40.000 22.90 0.41 44.26 4.02
2173 5219 5.473066 AGTTGCATGCTTTATTTTCCACT 57.527 34.783 20.33 2.62 0.00 4.00
2174 5220 5.232463 AGTTGCATGCTTTATTTTCCACTG 58.768 37.500 20.33 0.00 0.00 3.66
2175 5221 3.587923 TGCATGCTTTATTTTCCACTGC 58.412 40.909 20.33 0.00 0.00 4.40
2176 5222 3.258872 TGCATGCTTTATTTTCCACTGCT 59.741 39.130 20.33 0.00 0.00 4.24
2177 5223 3.861689 GCATGCTTTATTTTCCACTGCTC 59.138 43.478 11.37 0.00 0.00 4.26
2178 5224 4.618927 GCATGCTTTATTTTCCACTGCTCA 60.619 41.667 11.37 0.00 0.00 4.26
2179 5225 5.657474 CATGCTTTATTTTCCACTGCTCAT 58.343 37.500 0.00 0.00 0.00 2.90
2180 5226 6.681120 GCATGCTTTATTTTCCACTGCTCATA 60.681 38.462 11.37 0.00 0.00 2.15
2181 5227 7.431249 CATGCTTTATTTTCCACTGCTCATAT 58.569 34.615 0.00 0.00 0.00 1.78
2182 5228 8.570488 CATGCTTTATTTTCCACTGCTCATATA 58.430 33.333 0.00 0.00 0.00 0.86
2183 5229 7.930217 TGCTTTATTTTCCACTGCTCATATAC 58.070 34.615 0.00 0.00 0.00 1.47
2184 5230 7.775093 TGCTTTATTTTCCACTGCTCATATACT 59.225 33.333 0.00 0.00 0.00 2.12
2185 5231 8.286097 GCTTTATTTTCCACTGCTCATATACTC 58.714 37.037 0.00 0.00 0.00 2.59
2186 5232 9.553064 CTTTATTTTCCACTGCTCATATACTCT 57.447 33.333 0.00 0.00 0.00 3.24
2187 5233 9.905713 TTTATTTTCCACTGCTCATATACTCTT 57.094 29.630 0.00 0.00 0.00 2.85
2188 5234 9.905713 TTATTTTCCACTGCTCATATACTCTTT 57.094 29.630 0.00 0.00 0.00 2.52
2189 5235 7.615582 TTTTCCACTGCTCATATACTCTTTG 57.384 36.000 0.00 0.00 0.00 2.77
2190 5236 4.697514 TCCACTGCTCATATACTCTTTGC 58.302 43.478 0.00 0.00 0.00 3.68
2191 5237 4.162131 TCCACTGCTCATATACTCTTTGCA 59.838 41.667 0.00 0.00 0.00 4.08
2192 5238 5.061853 CCACTGCTCATATACTCTTTGCAT 58.938 41.667 0.00 0.00 0.00 3.96
2193 5239 5.049612 CCACTGCTCATATACTCTTTGCATG 60.050 44.000 0.00 0.00 0.00 4.06
2194 5240 4.514441 ACTGCTCATATACTCTTTGCATGC 59.486 41.667 11.82 11.82 0.00 4.06
2195 5241 4.711399 TGCTCATATACTCTTTGCATGCT 58.289 39.130 20.33 0.00 0.00 3.79
2196 5242 5.128205 TGCTCATATACTCTTTGCATGCTT 58.872 37.500 20.33 0.00 0.00 3.91
2197 5243 5.008316 TGCTCATATACTCTTTGCATGCTTG 59.992 40.000 20.33 8.92 0.00 4.01
2209 5255 3.498927 GCATGCTTGCTAGAATTGTGT 57.501 42.857 16.80 0.00 45.77 3.72
2210 5256 3.841643 GCATGCTTGCTAGAATTGTGTT 58.158 40.909 16.80 0.00 45.77 3.32
2211 5257 4.985413 GCATGCTTGCTAGAATTGTGTTA 58.015 39.130 16.80 0.00 45.77 2.41
2212 5258 5.401550 GCATGCTTGCTAGAATTGTGTTAA 58.598 37.500 16.80 0.00 45.77 2.01
2213 5259 5.863397 GCATGCTTGCTAGAATTGTGTTAAA 59.137 36.000 16.80 0.00 45.77 1.52
2214 5260 6.365789 GCATGCTTGCTAGAATTGTGTTAAAA 59.634 34.615 16.80 0.00 45.77 1.52
2215 5261 7.063780 GCATGCTTGCTAGAATTGTGTTAAAAT 59.936 33.333 16.80 0.00 45.77 1.82
2216 5262 8.928733 CATGCTTGCTAGAATTGTGTTAAAATT 58.071 29.630 0.00 0.00 0.00 1.82
2217 5263 8.296799 TGCTTGCTAGAATTGTGTTAAAATTG 57.703 30.769 0.00 0.00 0.00 2.32
2218 5264 7.095691 TGCTTGCTAGAATTGTGTTAAAATTGC 60.096 33.333 0.00 0.00 0.00 3.56
2219 5265 7.095691 GCTTGCTAGAATTGTGTTAAAATTGCA 60.096 33.333 0.00 0.00 0.00 4.08
2220 5266 8.830201 TTGCTAGAATTGTGTTAAAATTGCAT 57.170 26.923 0.00 0.00 29.19 3.96
2221 5267 8.242085 TGCTAGAATTGTGTTAAAATTGCATG 57.758 30.769 0.00 0.00 0.00 4.06
2222 5268 8.087136 TGCTAGAATTGTGTTAAAATTGCATGA 58.913 29.630 0.00 0.00 0.00 3.07
2223 5269 8.375465 GCTAGAATTGTGTTAAAATTGCATGAC 58.625 33.333 0.00 0.00 0.00 3.06
2224 5270 9.630098 CTAGAATTGTGTTAAAATTGCATGACT 57.370 29.630 0.00 0.00 0.00 3.41
2225 5271 8.891671 AGAATTGTGTTAAAATTGCATGACTT 57.108 26.923 0.00 0.00 0.00 3.01
2226 5272 8.767085 AGAATTGTGTTAAAATTGCATGACTTG 58.233 29.630 0.00 0.00 0.00 3.16
2227 5273 8.436046 AATTGTGTTAAAATTGCATGACTTGT 57.564 26.923 0.00 0.00 0.00 3.16
2228 5274 6.825284 TGTGTTAAAATTGCATGACTTGTG 57.175 33.333 0.00 0.00 0.00 3.33
2229 5275 5.233902 TGTGTTAAAATTGCATGACTTGTGC 59.766 36.000 0.00 0.00 42.81 4.57
2230 5276 5.463061 GTGTTAAAATTGCATGACTTGTGCT 59.537 36.000 0.00 0.00 42.92 4.40
2231 5277 6.640499 GTGTTAAAATTGCATGACTTGTGCTA 59.360 34.615 0.00 0.00 42.92 3.49
2232 5278 7.168972 GTGTTAAAATTGCATGACTTGTGCTAA 59.831 33.333 0.00 0.00 42.92 3.09
2233 5279 7.381948 TGTTAAAATTGCATGACTTGTGCTAAG 59.618 33.333 0.00 0.58 42.92 2.18
2234 5280 5.710513 AAATTGCATGACTTGTGCTAAGA 57.289 34.783 0.00 0.00 42.92 2.10
2235 5281 5.909621 AATTGCATGACTTGTGCTAAGAT 57.090 34.783 0.00 0.00 42.92 2.40
2236 5282 5.909621 ATTGCATGACTTGTGCTAAGATT 57.090 34.783 0.00 0.00 42.92 2.40
2237 5283 4.690184 TGCATGACTTGTGCTAAGATTG 57.310 40.909 0.00 4.36 42.92 2.67
2238 5284 4.074259 TGCATGACTTGTGCTAAGATTGT 58.926 39.130 0.00 0.00 42.92 2.71
2239 5285 4.520111 TGCATGACTTGTGCTAAGATTGTT 59.480 37.500 0.00 0.00 42.92 2.83
2240 5286 5.704978 TGCATGACTTGTGCTAAGATTGTTA 59.295 36.000 0.00 0.00 42.92 2.41
2241 5287 6.206438 TGCATGACTTGTGCTAAGATTGTTAA 59.794 34.615 0.00 0.00 42.92 2.01
2242 5288 7.083858 GCATGACTTGTGCTAAGATTGTTAAA 58.916 34.615 0.00 0.00 39.45 1.52
2243 5289 7.594758 GCATGACTTGTGCTAAGATTGTTAAAA 59.405 33.333 0.00 0.00 39.45 1.52
2244 5290 9.630098 CATGACTTGTGCTAAGATTGTTAAAAT 57.370 29.630 8.05 0.00 0.00 1.82
2245 5291 9.846248 ATGACTTGTGCTAAGATTGTTAAAATC 57.154 29.630 8.05 0.00 0.00 2.17
2246 5292 9.066892 TGACTTGTGCTAAGATTGTTAAAATCT 57.933 29.630 8.05 0.00 38.55 2.40
2247 5293 9.334693 GACTTGTGCTAAGATTGTTAAAATCTG 57.665 33.333 0.00 0.00 37.11 2.90
2248 5294 7.809806 ACTTGTGCTAAGATTGTTAAAATCTGC 59.190 33.333 0.00 0.00 37.11 4.26
2249 5295 6.620678 TGTGCTAAGATTGTTAAAATCTGCC 58.379 36.000 0.00 0.00 37.11 4.85
2250 5296 6.208402 TGTGCTAAGATTGTTAAAATCTGCCA 59.792 34.615 0.00 0.00 37.11 4.92
2251 5297 7.090173 GTGCTAAGATTGTTAAAATCTGCCAA 58.910 34.615 0.00 0.00 37.11 4.52
2252 5298 7.598493 GTGCTAAGATTGTTAAAATCTGCCAAA 59.402 33.333 0.00 0.00 37.11 3.28
2253 5299 7.814107 TGCTAAGATTGTTAAAATCTGCCAAAG 59.186 33.333 0.00 0.00 37.11 2.77
2254 5300 8.028938 GCTAAGATTGTTAAAATCTGCCAAAGA 58.971 33.333 0.00 0.00 37.11 2.52
2255 5301 9.346725 CTAAGATTGTTAAAATCTGCCAAAGAC 57.653 33.333 0.00 0.00 37.88 3.01
2256 5302 7.530426 AGATTGTTAAAATCTGCCAAAGACT 57.470 32.000 0.00 0.00 37.88 3.24
2257 5303 8.635765 AGATTGTTAAAATCTGCCAAAGACTA 57.364 30.769 0.00 0.00 37.88 2.59
2258 5304 9.077885 AGATTGTTAAAATCTGCCAAAGACTAA 57.922 29.630 0.00 0.00 37.88 2.24
2259 5305 9.691362 GATTGTTAAAATCTGCCAAAGACTAAA 57.309 29.630 0.00 0.00 37.88 1.85
2266 5312 8.650143 AAATCTGCCAAAGACTAAAATTAGGA 57.350 30.769 5.27 0.00 37.88 2.94
2267 5313 8.650143 AATCTGCCAAAGACTAAAATTAGGAA 57.350 30.769 5.27 0.00 37.88 3.36
2268 5314 8.650143 ATCTGCCAAAGACTAAAATTAGGAAA 57.350 30.769 5.27 0.00 37.88 3.13
2269 5315 8.472007 TCTGCCAAAGACTAAAATTAGGAAAA 57.528 30.769 5.27 0.00 35.08 2.29
2270 5316 8.576442 TCTGCCAAAGACTAAAATTAGGAAAAG 58.424 33.333 5.27 0.00 35.08 2.27
2271 5317 7.666623 TGCCAAAGACTAAAATTAGGAAAAGG 58.333 34.615 5.27 3.04 35.08 3.11
2272 5318 7.289084 TGCCAAAGACTAAAATTAGGAAAAGGT 59.711 33.333 5.27 0.00 35.08 3.50
2273 5319 8.148351 GCCAAAGACTAAAATTAGGAAAAGGTT 58.852 33.333 5.27 0.00 35.08 3.50
2289 5335 9.826574 AGGAAAAGGTTAAGTTTTTATTTGGTC 57.173 29.630 0.00 0.00 0.00 4.02
2290 5336 9.602568 GGAAAAGGTTAAGTTTTTATTTGGTCA 57.397 29.630 0.00 0.00 0.00 4.02
2304 5350 9.457436 TTTTATTTGGTCAAGTAGTCTAATCCC 57.543 33.333 0.00 0.00 0.00 3.85
2305 5351 5.431179 TTTGGTCAAGTAGTCTAATCCCC 57.569 43.478 0.00 0.00 0.00 4.81
2306 5352 3.381335 TGGTCAAGTAGTCTAATCCCCC 58.619 50.000 0.00 0.00 0.00 5.40
2335 5381 8.152246 TCTAGACTTACTTCTAGATCCTACAGC 58.848 40.741 5.87 0.00 46.09 4.40
2336 5382 6.664714 AGACTTACTTCTAGATCCTACAGCA 58.335 40.000 0.00 0.00 0.00 4.41
2337 5383 7.294584 AGACTTACTTCTAGATCCTACAGCAT 58.705 38.462 0.00 0.00 0.00 3.79
2338 5384 7.447238 AGACTTACTTCTAGATCCTACAGCATC 59.553 40.741 0.00 0.00 0.00 3.91
2339 5385 6.492087 ACTTACTTCTAGATCCTACAGCATCC 59.508 42.308 0.00 0.00 0.00 3.51
2340 5386 4.156477 ACTTCTAGATCCTACAGCATCCC 58.844 47.826 0.00 0.00 0.00 3.85
2341 5387 4.140805 ACTTCTAGATCCTACAGCATCCCT 60.141 45.833 0.00 0.00 0.00 4.20
2342 5388 4.477536 TCTAGATCCTACAGCATCCCTT 57.522 45.455 0.00 0.00 0.00 3.95
2343 5389 5.600669 TCTAGATCCTACAGCATCCCTTA 57.399 43.478 0.00 0.00 0.00 2.69
2344 5390 5.326069 TCTAGATCCTACAGCATCCCTTAC 58.674 45.833 0.00 0.00 0.00 2.34
2345 5391 4.206244 AGATCCTACAGCATCCCTTACT 57.794 45.455 0.00 0.00 0.00 2.24
2346 5392 4.561752 AGATCCTACAGCATCCCTTACTT 58.438 43.478 0.00 0.00 0.00 2.24
2347 5393 4.591072 AGATCCTACAGCATCCCTTACTTC 59.409 45.833 0.00 0.00 0.00 3.01
2348 5394 2.693591 TCCTACAGCATCCCTTACTTCG 59.306 50.000 0.00 0.00 0.00 3.79
2349 5395 2.224066 CCTACAGCATCCCTTACTTCGG 60.224 54.545 0.00 0.00 0.00 4.30
2350 5396 1.568504 ACAGCATCCCTTACTTCGGA 58.431 50.000 0.00 0.00 0.00 4.55
2351 5397 2.119495 ACAGCATCCCTTACTTCGGAT 58.881 47.619 0.00 0.00 39.56 4.18
2355 5401 2.622064 ATCCCTTACTTCGGATGTGC 57.378 50.000 6.78 0.00 37.49 4.57
2356 5402 1.568504 TCCCTTACTTCGGATGTGCT 58.431 50.000 6.78 0.00 0.00 4.40
2357 5403 2.742348 TCCCTTACTTCGGATGTGCTA 58.258 47.619 6.78 0.00 0.00 3.49
2358 5404 2.693591 TCCCTTACTTCGGATGTGCTAG 59.306 50.000 6.78 0.00 0.00 3.42
2359 5405 2.224066 CCCTTACTTCGGATGTGCTAGG 60.224 54.545 6.78 9.61 0.00 3.02
2360 5406 2.693591 CCTTACTTCGGATGTGCTAGGA 59.306 50.000 6.78 0.00 0.00 2.94
2361 5407 3.322254 CCTTACTTCGGATGTGCTAGGAT 59.678 47.826 6.78 0.00 0.00 3.24
2362 5408 4.551388 CTTACTTCGGATGTGCTAGGATC 58.449 47.826 6.78 0.00 0.00 3.36
2363 5409 1.338337 ACTTCGGATGTGCTAGGATCG 59.662 52.381 0.00 0.00 0.00 3.69
2364 5410 0.032130 TTCGGATGTGCTAGGATCGC 59.968 55.000 0.00 0.00 0.00 4.58
2365 5411 0.823769 TCGGATGTGCTAGGATCGCT 60.824 55.000 0.00 0.00 0.00 4.93
2366 5412 0.665670 CGGATGTGCTAGGATCGCTG 60.666 60.000 0.00 0.00 0.00 5.18
2367 5413 0.320247 GGATGTGCTAGGATCGCTGG 60.320 60.000 0.00 0.00 0.00 4.85
2368 5414 0.390860 GATGTGCTAGGATCGCTGGT 59.609 55.000 0.00 0.00 0.00 4.00
2369 5415 0.105593 ATGTGCTAGGATCGCTGGTG 59.894 55.000 0.00 0.00 0.00 4.17
2370 5416 1.884926 GTGCTAGGATCGCTGGTGC 60.885 63.158 0.00 0.00 0.00 5.01
2371 5417 2.060383 TGCTAGGATCGCTGGTGCT 61.060 57.895 0.00 0.00 36.97 4.40
2372 5418 1.593750 GCTAGGATCGCTGGTGCTG 60.594 63.158 0.00 0.00 36.97 4.41
2373 5419 1.593750 CTAGGATCGCTGGTGCTGC 60.594 63.158 0.00 0.00 36.97 5.25
2374 5420 2.025767 CTAGGATCGCTGGTGCTGCT 62.026 60.000 0.00 0.00 36.97 4.24
2375 5421 0.755327 TAGGATCGCTGGTGCTGCTA 60.755 55.000 0.00 0.00 36.97 3.49
2376 5422 1.884926 GGATCGCTGGTGCTGCTAC 60.885 63.158 0.00 0.00 36.97 3.58
2377 5423 2.202797 ATCGCTGGTGCTGCTACG 60.203 61.111 0.00 0.00 36.97 3.51
2378 5424 3.723235 ATCGCTGGTGCTGCTACGG 62.723 63.158 0.00 0.00 36.97 4.02
2381 5427 4.087892 CTGGTGCTGCTACGGGCT 62.088 66.667 0.00 0.00 42.39 5.19
2382 5428 2.682136 TGGTGCTGCTACGGGCTA 60.682 61.111 0.00 0.00 42.39 3.93
2383 5429 2.238847 CTGGTGCTGCTACGGGCTAA 62.239 60.000 0.00 0.00 42.39 3.09
2384 5430 1.814169 GGTGCTGCTACGGGCTAAC 60.814 63.158 0.00 0.92 42.39 2.34
2385 5431 1.814169 GTGCTGCTACGGGCTAACC 60.814 63.158 0.00 0.00 42.39 2.85
2386 5432 2.287274 TGCTGCTACGGGCTAACCA 61.287 57.895 0.00 0.00 42.39 3.67
2387 5433 1.521681 GCTGCTACGGGCTAACCAG 60.522 63.158 0.00 0.00 42.39 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.302157 CCTTCCTGTTCGGGGATATACC 59.698 54.545 0.00 0.00 38.08 2.73
14 15 2.302157 CCCTTCCTGTTCGGGGATATAC 59.698 54.545 0.00 0.00 41.25 1.47
15 16 2.090380 ACCCTTCCTGTTCGGGGATATA 60.090 50.000 3.72 0.00 42.44 0.86
16 17 1.345112 ACCCTTCCTGTTCGGGGATAT 60.345 52.381 3.72 0.00 42.44 1.63
17 18 0.043637 ACCCTTCCTGTTCGGGGATA 59.956 55.000 3.72 0.00 42.44 2.59
18 19 0.043637 TACCCTTCCTGTTCGGGGAT 59.956 55.000 3.72 0.00 42.44 3.85
19 20 0.043637 ATACCCTTCCTGTTCGGGGA 59.956 55.000 3.72 0.00 42.44 4.81
20 21 0.180406 CATACCCTTCCTGTTCGGGG 59.820 60.000 0.00 0.00 42.44 5.73
21 22 1.134491 GTCATACCCTTCCTGTTCGGG 60.134 57.143 0.00 0.00 43.79 5.14
22 23 1.831736 AGTCATACCCTTCCTGTTCGG 59.168 52.381 0.00 0.00 0.00 4.30
23 24 4.939052 ATAGTCATACCCTTCCTGTTCG 57.061 45.455 0.00 0.00 0.00 3.95
24 25 7.120923 TGTTATAGTCATACCCTTCCTGTTC 57.879 40.000 0.00 0.00 0.00 3.18
25 26 7.504926 TTGTTATAGTCATACCCTTCCTGTT 57.495 36.000 0.00 0.00 0.00 3.16
26 27 7.504926 TTTGTTATAGTCATACCCTTCCTGT 57.495 36.000 0.00 0.00 0.00 4.00
27 28 7.993183 ACATTTGTTATAGTCATACCCTTCCTG 59.007 37.037 0.00 0.00 0.00 3.86
37 38 8.122330 CACACGCATTACATTTGTTATAGTCAT 58.878 33.333 0.00 0.00 0.00 3.06
79 80 7.128331 CCATATGTGAGCAGTTTTAGAATTCG 58.872 38.462 1.24 0.00 0.00 3.34
173 1271 8.257306 TGTAGATGCATGACTCATAACAAGTAA 58.743 33.333 2.46 0.00 0.00 2.24
182 1280 4.080695 ACCAAGTGTAGATGCATGACTCAT 60.081 41.667 2.46 0.00 0.00 2.90
249 1535 5.053978 AGTCTTTGGTGATCTGAAAAGGT 57.946 39.130 11.90 2.09 31.87 3.50
397 3363 5.322754 AGTACTTGTAGAGCAGGTCTGTAA 58.677 41.667 12.66 6.34 38.43 2.41
479 3445 6.207417 CACAAATCTATGGTGTTCAGGAGTTT 59.793 38.462 0.00 0.00 0.00 2.66
506 3472 1.546323 CCTGATTGACCACCTGTTGCT 60.546 52.381 0.00 0.00 0.00 3.91
589 3555 1.173913 GTGTTTATGCAGTGGGGTCC 58.826 55.000 0.00 0.00 0.00 4.46
596 3562 0.536233 TGCACCGGTGTTTATGCAGT 60.536 50.000 33.92 0.00 42.92 4.40
619 3586 3.697542 TCTGCTTCTTGTACATACGGCTA 59.302 43.478 0.00 0.00 0.00 3.93
860 3829 3.591977 ACAAGGAGCATACTAACCCCTTT 59.408 43.478 0.00 0.00 32.21 3.11
908 3877 5.477510 GGAAAAATAATGTGGTGCATGTCA 58.522 37.500 0.00 0.00 37.96 3.58
943 3912 5.238650 GGTTCGGAAACTTCAGATTCTTCAA 59.761 40.000 0.00 0.00 35.61 2.69
944 3913 4.755123 GGTTCGGAAACTTCAGATTCTTCA 59.245 41.667 0.00 0.00 35.61 3.02
945 3914 4.998033 AGGTTCGGAAACTTCAGATTCTTC 59.002 41.667 1.57 0.00 35.61 2.87
946 3915 4.974399 AGGTTCGGAAACTTCAGATTCTT 58.026 39.130 1.57 0.00 35.61 2.52
947 3916 4.284746 AGAGGTTCGGAAACTTCAGATTCT 59.715 41.667 10.08 0.00 42.36 2.40
948 3917 4.390297 CAGAGGTTCGGAAACTTCAGATTC 59.610 45.833 10.08 0.00 42.36 2.52
949 3918 4.202367 ACAGAGGTTCGGAAACTTCAGATT 60.202 41.667 10.08 0.00 42.36 2.40
950 3919 3.325135 ACAGAGGTTCGGAAACTTCAGAT 59.675 43.478 10.08 0.00 42.36 2.90
951 3920 2.698797 ACAGAGGTTCGGAAACTTCAGA 59.301 45.455 10.08 0.00 42.36 3.27
962 3940 2.416547 CAGCATTACCAACAGAGGTTCG 59.583 50.000 0.00 0.00 43.08 3.95
1051 4029 1.134699 CAGCTTCGCCTCTCCATACAA 60.135 52.381 0.00 0.00 0.00 2.41
1118 4120 1.410517 GTTGATCATCTCTCGGGCTCA 59.589 52.381 0.00 0.00 0.00 4.26
1171 4175 8.273780 ACACCATTAAGATTCAGATTCAGAAC 57.726 34.615 0.00 0.00 0.00 3.01
1275 4283 1.295746 CTCAGCTCAAGCAGGCTCA 59.704 57.895 4.59 0.00 45.16 4.26
1317 4325 1.891919 GCCGCCTTGAGTTGTGACA 60.892 57.895 0.00 0.00 0.00 3.58
1339 4347 1.298859 GCCACACTTGACCGATGACC 61.299 60.000 0.00 0.00 0.00 4.02
1466 4474 4.502016 AGACGTCAGAGACTAATACACGA 58.498 43.478 19.50 0.00 0.00 4.35
1530 4538 2.414559 GCGTGTCAGCTACCTACGTAAA 60.415 50.000 11.75 0.00 37.12 2.01
1635 4651 4.598022 TCCATTCTATCACACAATTGCCA 58.402 39.130 5.05 0.00 0.00 4.92
1780 4810 0.983905 TATACCCGTGTGCCACCCAT 60.984 55.000 0.00 0.00 0.00 4.00
1782 4812 0.035247 TTTATACCCGTGTGCCACCC 60.035 55.000 0.00 0.00 0.00 4.61
1784 4814 3.002965 GCTATTTTATACCCGTGTGCCAC 59.997 47.826 0.00 0.00 0.00 5.01
1785 4815 3.207778 GCTATTTTATACCCGTGTGCCA 58.792 45.455 0.00 0.00 0.00 4.92
1787 4817 3.875134 ACTGCTATTTTATACCCGTGTGC 59.125 43.478 0.00 0.00 0.00 4.57
1788 4818 5.176958 GCTACTGCTATTTTATACCCGTGTG 59.823 44.000 0.00 0.00 36.03 3.82
1789 4819 5.163385 TGCTACTGCTATTTTATACCCGTGT 60.163 40.000 0.00 0.00 40.48 4.49
1853 4898 4.605640 AACCCACGCTACTACTAACAAA 57.394 40.909 0.00 0.00 0.00 2.83
1854 4899 4.605640 AAACCCACGCTACTACTAACAA 57.394 40.909 0.00 0.00 0.00 2.83
1855 4900 5.469479 GTTAAACCCACGCTACTACTAACA 58.531 41.667 0.00 0.00 0.00 2.41
1856 4901 4.864806 GGTTAAACCCACGCTACTACTAAC 59.135 45.833 0.00 0.00 30.04 2.34
1857 4902 5.072040 GGTTAAACCCACGCTACTACTAA 57.928 43.478 0.00 0.00 30.04 2.24
1858 4903 4.718940 GGTTAAACCCACGCTACTACTA 57.281 45.455 0.00 0.00 30.04 1.82
1859 4904 3.599730 GGTTAAACCCACGCTACTACT 57.400 47.619 0.00 0.00 30.04 2.57
1909 4955 2.816672 GGTACCCGCACTACTAGTATCC 59.183 54.545 2.33 0.00 0.00 2.59
1934 4980 3.431766 CGGGTAAAATGGCTACTAGCAGT 60.432 47.826 10.27 0.00 44.75 4.40
1959 5005 5.757099 ACTAGGAAAAAGGCTACTAGCAA 57.243 39.130 10.27 0.00 44.75 3.91
2005 5051 3.818787 TAACGGCTCCGCGAGTCC 61.819 66.667 8.23 3.78 44.19 3.85
2006 5052 2.578981 GTAACGGCTCCGCGAGTC 60.579 66.667 8.23 3.57 44.19 3.36
2007 5053 4.125695 GGTAACGGCTCCGCGAGT 62.126 66.667 8.23 0.00 44.19 4.18
2008 5054 4.867599 GGGTAACGGCTCCGCGAG 62.868 72.222 8.23 4.18 44.19 5.03
2010 5056 4.446413 AAGGGTAACGGCTCCGCG 62.446 66.667 8.41 0.00 44.19 6.46
2011 5057 2.510918 GAAGGGTAACGGCTCCGC 60.511 66.667 8.41 0.00 44.19 5.54
2012 5058 2.202703 CGAAGGGTAACGGCTCCG 60.203 66.667 6.79 6.79 46.03 4.63
2013 5059 1.447314 CACGAAGGGTAACGGCTCC 60.447 63.158 0.00 0.00 37.60 4.70
2014 5060 1.447314 CCACGAAGGGTAACGGCTC 60.447 63.158 0.00 0.00 37.60 4.70
2015 5061 2.660802 CCACGAAGGGTAACGGCT 59.339 61.111 0.00 0.00 37.60 5.52
2024 5070 1.608283 GGAGACTTCAACCCACGAAGG 60.608 57.143 5.04 0.00 43.43 3.46
2025 5071 1.070134 TGGAGACTTCAACCCACGAAG 59.930 52.381 0.00 0.00 44.46 3.79
2026 5072 1.124780 TGGAGACTTCAACCCACGAA 58.875 50.000 0.00 0.00 0.00 3.85
2027 5073 1.275291 GATGGAGACTTCAACCCACGA 59.725 52.381 0.00 0.00 34.76 4.35
2028 5074 1.001974 TGATGGAGACTTCAACCCACG 59.998 52.381 0.00 0.00 41.09 4.94
2029 5075 2.859165 TGATGGAGACTTCAACCCAC 57.141 50.000 0.00 0.00 41.09 4.61
2035 5081 1.967779 TCCACGTTGATGGAGACTTCA 59.032 47.619 0.00 0.00 44.14 3.02
2036 5082 2.743636 TCCACGTTGATGGAGACTTC 57.256 50.000 0.00 0.00 44.14 3.01
2043 5089 2.287393 TCGTACATCCACGTTGATGG 57.713 50.000 27.50 14.01 45.16 3.51
2044 5090 3.425525 GCTATCGTACATCCACGTTGATG 59.574 47.826 23.87 23.87 46.10 3.07
2045 5091 3.067601 TGCTATCGTACATCCACGTTGAT 59.932 43.478 0.00 0.00 42.51 2.57
2046 5092 2.424246 TGCTATCGTACATCCACGTTGA 59.576 45.455 0.00 0.00 42.51 3.18
2047 5093 2.534349 GTGCTATCGTACATCCACGTTG 59.466 50.000 0.00 0.00 42.51 4.10
2048 5094 2.480759 GGTGCTATCGTACATCCACGTT 60.481 50.000 0.00 0.00 42.51 3.99
2049 5095 1.066605 GGTGCTATCGTACATCCACGT 59.933 52.381 0.00 0.00 42.51 4.49
2050 5096 1.066454 TGGTGCTATCGTACATCCACG 59.934 52.381 0.00 0.00 43.28 4.94
2051 5097 2.470821 GTGGTGCTATCGTACATCCAC 58.529 52.381 0.00 0.00 37.33 4.02
2052 5098 1.411246 GGTGGTGCTATCGTACATCCA 59.589 52.381 0.00 0.00 0.00 3.41
2053 5099 1.687123 AGGTGGTGCTATCGTACATCC 59.313 52.381 0.00 0.00 0.00 3.51
2054 5100 4.672024 CGATAGGTGGTGCTATCGTACATC 60.672 50.000 3.96 0.00 45.51 3.06
2055 5101 3.190744 CGATAGGTGGTGCTATCGTACAT 59.809 47.826 3.96 0.00 45.51 2.29
2056 5102 2.551032 CGATAGGTGGTGCTATCGTACA 59.449 50.000 3.96 0.00 45.51 2.90
2057 5103 3.198863 CGATAGGTGGTGCTATCGTAC 57.801 52.381 3.96 0.00 45.51 3.67
2061 5107 3.181469 TGGTTTCGATAGGTGGTGCTATC 60.181 47.826 0.00 0.00 0.00 2.08
2062 5108 2.769663 TGGTTTCGATAGGTGGTGCTAT 59.230 45.455 0.00 0.00 0.00 2.97
2063 5109 2.181125 TGGTTTCGATAGGTGGTGCTA 58.819 47.619 0.00 0.00 0.00 3.49
2064 5110 0.981183 TGGTTTCGATAGGTGGTGCT 59.019 50.000 0.00 0.00 0.00 4.40
2065 5111 1.670811 CATGGTTTCGATAGGTGGTGC 59.329 52.381 0.00 0.00 0.00 5.01
2066 5112 2.288666 CCATGGTTTCGATAGGTGGTG 58.711 52.381 2.57 0.00 0.00 4.17
2067 5113 1.211949 CCCATGGTTTCGATAGGTGGT 59.788 52.381 11.73 0.00 0.00 4.16
2068 5114 1.211949 ACCCATGGTTTCGATAGGTGG 59.788 52.381 11.73 0.00 27.29 4.61
2069 5115 2.710096 ACCCATGGTTTCGATAGGTG 57.290 50.000 11.73 0.00 27.29 4.00
2070 5116 4.847990 TTTACCCATGGTTTCGATAGGT 57.152 40.909 11.73 0.10 37.09 3.08
2090 5136 5.288804 CAATTTGGAGACACGGTGATTTTT 58.711 37.500 16.29 0.00 42.67 1.94
2091 5137 4.795962 GCAATTTGGAGACACGGTGATTTT 60.796 41.667 16.29 0.00 42.67 1.82
2092 5138 3.305335 GCAATTTGGAGACACGGTGATTT 60.305 43.478 16.29 0.00 42.67 2.17
2093 5139 2.228822 GCAATTTGGAGACACGGTGATT 59.771 45.455 16.29 1.77 42.67 2.57
2094 5140 1.812571 GCAATTTGGAGACACGGTGAT 59.187 47.619 16.29 2.48 42.67 3.06
2095 5141 1.202758 AGCAATTTGGAGACACGGTGA 60.203 47.619 16.29 0.00 42.67 4.02
2096 5142 1.238439 AGCAATTTGGAGACACGGTG 58.762 50.000 6.58 6.58 42.67 4.94
2097 5143 1.981256 AAGCAATTTGGAGACACGGT 58.019 45.000 0.00 0.00 42.67 4.83
2098 5144 2.293122 TCAAAGCAATTTGGAGACACGG 59.707 45.455 0.00 0.00 42.67 4.94
2099 5145 3.624326 TCAAAGCAATTTGGAGACACG 57.376 42.857 0.00 0.00 42.67 4.49
2100 5146 6.218746 AGATTTCAAAGCAATTTGGAGACAC 58.781 36.000 0.00 0.00 42.67 3.67
2101 5147 6.409524 AGATTTCAAAGCAATTTGGAGACA 57.590 33.333 0.00 0.00 39.83 3.41
2102 5148 5.866092 GGAGATTTCAAAGCAATTTGGAGAC 59.134 40.000 0.00 0.00 32.99 3.36
2103 5149 5.539574 TGGAGATTTCAAAGCAATTTGGAGA 59.460 36.000 0.00 0.00 32.99 3.71
2104 5150 5.786311 TGGAGATTTCAAAGCAATTTGGAG 58.214 37.500 0.00 0.00 32.99 3.86
2105 5151 5.804944 TGGAGATTTCAAAGCAATTTGGA 57.195 34.783 0.00 0.00 32.99 3.53
2106 5152 6.293571 GGTTTGGAGATTTCAAAGCAATTTGG 60.294 38.462 12.05 0.00 45.99 3.28
2107 5153 6.661669 GGTTTGGAGATTTCAAAGCAATTTG 58.338 36.000 12.05 0.00 45.99 2.32
2108 5154 6.866010 GGTTTGGAGATTTCAAAGCAATTT 57.134 33.333 12.05 0.00 45.99 1.82
2113 5159 4.560128 GAAGGGTTTGGAGATTTCAAAGC 58.440 43.478 9.40 9.40 45.99 3.51
2114 5160 4.021104 GGGAAGGGTTTGGAGATTTCAAAG 60.021 45.833 0.00 0.00 35.16 2.77
2115 5161 3.901222 GGGAAGGGTTTGGAGATTTCAAA 59.099 43.478 0.00 0.00 0.00 2.69
2116 5162 3.142028 AGGGAAGGGTTTGGAGATTTCAA 59.858 43.478 0.00 0.00 0.00 2.69
2117 5163 2.721906 AGGGAAGGGTTTGGAGATTTCA 59.278 45.455 0.00 0.00 0.00 2.69
2118 5164 3.458044 AGGGAAGGGTTTGGAGATTTC 57.542 47.619 0.00 0.00 0.00 2.17
2119 5165 3.923273 AAGGGAAGGGTTTGGAGATTT 57.077 42.857 0.00 0.00 0.00 2.17
2120 5166 3.660669 TGTAAGGGAAGGGTTTGGAGATT 59.339 43.478 0.00 0.00 0.00 2.40
2121 5167 3.265489 TGTAAGGGAAGGGTTTGGAGAT 58.735 45.455 0.00 0.00 0.00 2.75
2122 5168 2.708759 TGTAAGGGAAGGGTTTGGAGA 58.291 47.619 0.00 0.00 0.00 3.71
2123 5169 3.739401 ATGTAAGGGAAGGGTTTGGAG 57.261 47.619 0.00 0.00 0.00 3.86
2124 5170 3.660669 AGAATGTAAGGGAAGGGTTTGGA 59.339 43.478 0.00 0.00 0.00 3.53
2125 5171 4.047627 AGAATGTAAGGGAAGGGTTTGG 57.952 45.455 0.00 0.00 0.00 3.28
2126 5172 4.321974 GCAAGAATGTAAGGGAAGGGTTTG 60.322 45.833 0.00 0.00 0.00 2.93
2127 5173 3.832490 GCAAGAATGTAAGGGAAGGGTTT 59.168 43.478 0.00 0.00 0.00 3.27
2128 5174 3.181423 TGCAAGAATGTAAGGGAAGGGTT 60.181 43.478 0.00 0.00 0.00 4.11
2129 5175 2.378547 TGCAAGAATGTAAGGGAAGGGT 59.621 45.455 0.00 0.00 0.00 4.34
2130 5176 3.085952 TGCAAGAATGTAAGGGAAGGG 57.914 47.619 0.00 0.00 0.00 3.95
2131 5177 4.708726 CTTGCAAGAATGTAAGGGAAGG 57.291 45.455 22.31 0.00 43.22 3.46
2148 5194 4.451774 TGGAAAATAAAGCATGCAACTTGC 59.548 37.500 21.98 6.82 45.29 4.01
2149 5195 5.697633 AGTGGAAAATAAAGCATGCAACTTG 59.302 36.000 21.98 0.00 0.00 3.16
2150 5196 5.697633 CAGTGGAAAATAAAGCATGCAACTT 59.302 36.000 21.98 12.33 0.00 2.66
2151 5197 5.232463 CAGTGGAAAATAAAGCATGCAACT 58.768 37.500 21.98 5.92 0.00 3.16
2152 5198 4.143052 GCAGTGGAAAATAAAGCATGCAAC 60.143 41.667 21.98 2.20 0.00 4.17
2153 5199 3.995705 GCAGTGGAAAATAAAGCATGCAA 59.004 39.130 21.98 5.05 0.00 4.08
2154 5200 3.258872 AGCAGTGGAAAATAAAGCATGCA 59.741 39.130 21.98 0.00 33.69 3.96
2155 5201 3.853475 AGCAGTGGAAAATAAAGCATGC 58.147 40.909 10.51 10.51 0.00 4.06
2156 5202 5.063180 TGAGCAGTGGAAAATAAAGCATG 57.937 39.130 0.00 0.00 0.00 4.06
2157 5203 5.927281 ATGAGCAGTGGAAAATAAAGCAT 57.073 34.783 0.00 0.00 0.00 3.79
2158 5204 7.775093 AGTATATGAGCAGTGGAAAATAAAGCA 59.225 33.333 0.00 0.00 0.00 3.91
2159 5205 8.159344 AGTATATGAGCAGTGGAAAATAAAGC 57.841 34.615 0.00 0.00 0.00 3.51
2160 5206 9.553064 AGAGTATATGAGCAGTGGAAAATAAAG 57.447 33.333 0.00 0.00 0.00 1.85
2161 5207 9.905713 AAGAGTATATGAGCAGTGGAAAATAAA 57.094 29.630 0.00 0.00 0.00 1.40
2162 5208 9.905713 AAAGAGTATATGAGCAGTGGAAAATAA 57.094 29.630 0.00 0.00 0.00 1.40
2163 5209 9.330063 CAAAGAGTATATGAGCAGTGGAAAATA 57.670 33.333 0.00 0.00 0.00 1.40
2164 5210 7.201767 GCAAAGAGTATATGAGCAGTGGAAAAT 60.202 37.037 0.00 0.00 0.00 1.82
2165 5211 6.094048 GCAAAGAGTATATGAGCAGTGGAAAA 59.906 38.462 0.00 0.00 0.00 2.29
2166 5212 5.586243 GCAAAGAGTATATGAGCAGTGGAAA 59.414 40.000 0.00 0.00 0.00 3.13
2167 5213 5.118990 GCAAAGAGTATATGAGCAGTGGAA 58.881 41.667 0.00 0.00 0.00 3.53
2168 5214 4.162131 TGCAAAGAGTATATGAGCAGTGGA 59.838 41.667 0.00 0.00 0.00 4.02
2169 5215 4.445453 TGCAAAGAGTATATGAGCAGTGG 58.555 43.478 0.00 0.00 0.00 4.00
2170 5216 5.560375 GCATGCAAAGAGTATATGAGCAGTG 60.560 44.000 14.21 0.00 33.69 3.66
2171 5217 4.514441 GCATGCAAAGAGTATATGAGCAGT 59.486 41.667 14.21 0.00 33.69 4.40
2172 5218 4.755629 AGCATGCAAAGAGTATATGAGCAG 59.244 41.667 21.98 0.00 33.69 4.24
2173 5219 4.711399 AGCATGCAAAGAGTATATGAGCA 58.289 39.130 21.98 0.00 34.78 4.26
2174 5220 5.450171 CAAGCATGCAAAGAGTATATGAGC 58.550 41.667 21.98 0.00 0.00 4.26
2190 5236 7.872163 TTTTAACACAATTCTAGCAAGCATG 57.128 32.000 0.00 0.00 0.00 4.06
2191 5237 8.928733 CAATTTTAACACAATTCTAGCAAGCAT 58.071 29.630 0.00 0.00 0.00 3.79
2192 5238 7.095691 GCAATTTTAACACAATTCTAGCAAGCA 60.096 33.333 0.00 0.00 0.00 3.91
2193 5239 7.095691 TGCAATTTTAACACAATTCTAGCAAGC 60.096 33.333 0.00 0.00 0.00 4.01
2194 5240 8.296799 TGCAATTTTAACACAATTCTAGCAAG 57.703 30.769 0.00 0.00 0.00 4.01
2195 5241 8.710551 CATGCAATTTTAACACAATTCTAGCAA 58.289 29.630 0.00 0.00 29.17 3.91
2196 5242 8.087136 TCATGCAATTTTAACACAATTCTAGCA 58.913 29.630 0.00 0.00 29.63 3.49
2197 5243 8.375465 GTCATGCAATTTTAACACAATTCTAGC 58.625 33.333 0.00 0.00 0.00 3.42
2198 5244 9.630098 AGTCATGCAATTTTAACACAATTCTAG 57.370 29.630 0.00 0.00 0.00 2.43
2199 5245 9.979578 AAGTCATGCAATTTTAACACAATTCTA 57.020 25.926 0.00 0.00 0.00 2.10
2200 5246 8.767085 CAAGTCATGCAATTTTAACACAATTCT 58.233 29.630 0.00 0.00 0.00 2.40
2201 5247 8.550376 ACAAGTCATGCAATTTTAACACAATTC 58.450 29.630 0.00 0.00 0.00 2.17
2202 5248 8.336806 CACAAGTCATGCAATTTTAACACAATT 58.663 29.630 0.00 0.00 0.00 2.32
2203 5249 7.518689 GCACAAGTCATGCAATTTTAACACAAT 60.519 33.333 0.00 0.00 42.88 2.71
2204 5250 6.238049 GCACAAGTCATGCAATTTTAACACAA 60.238 34.615 0.00 0.00 42.88 3.33
2205 5251 5.233902 GCACAAGTCATGCAATTTTAACACA 59.766 36.000 0.00 0.00 42.88 3.72
2206 5252 5.463061 AGCACAAGTCATGCAATTTTAACAC 59.537 36.000 0.00 0.00 45.92 3.32
2207 5253 5.599732 AGCACAAGTCATGCAATTTTAACA 58.400 33.333 0.00 0.00 45.92 2.41
2208 5254 7.594758 TCTTAGCACAAGTCATGCAATTTTAAC 59.405 33.333 0.00 0.00 45.92 2.01
2209 5255 7.656412 TCTTAGCACAAGTCATGCAATTTTAA 58.344 30.769 0.00 0.00 45.92 1.52
2210 5256 7.213216 TCTTAGCACAAGTCATGCAATTTTA 57.787 32.000 0.00 0.00 45.92 1.52
2211 5257 6.088016 TCTTAGCACAAGTCATGCAATTTT 57.912 33.333 0.00 0.00 45.92 1.82
2212 5258 5.710513 TCTTAGCACAAGTCATGCAATTT 57.289 34.783 0.00 0.00 45.92 1.82
2213 5259 5.909621 ATCTTAGCACAAGTCATGCAATT 57.090 34.783 0.00 0.00 45.92 2.32
2214 5260 5.184479 ACAATCTTAGCACAAGTCATGCAAT 59.816 36.000 0.00 0.00 45.92 3.56
2215 5261 4.520111 ACAATCTTAGCACAAGTCATGCAA 59.480 37.500 0.00 0.00 45.92 4.08
2216 5262 4.074259 ACAATCTTAGCACAAGTCATGCA 58.926 39.130 0.00 0.00 45.92 3.96
2217 5263 4.691860 ACAATCTTAGCACAAGTCATGC 57.308 40.909 0.00 0.00 43.74 4.06
2218 5264 9.630098 ATTTTAACAATCTTAGCACAAGTCATG 57.370 29.630 0.00 0.00 0.00 3.07
2219 5265 9.846248 GATTTTAACAATCTTAGCACAAGTCAT 57.154 29.630 0.00 0.00 0.00 3.06
2220 5266 9.066892 AGATTTTAACAATCTTAGCACAAGTCA 57.933 29.630 6.92 0.00 33.47 3.41
2221 5267 9.334693 CAGATTTTAACAATCTTAGCACAAGTC 57.665 33.333 9.02 0.00 34.96 3.01
2222 5268 7.809806 GCAGATTTTAACAATCTTAGCACAAGT 59.190 33.333 9.02 0.00 34.96 3.16
2223 5269 7.274250 GGCAGATTTTAACAATCTTAGCACAAG 59.726 37.037 15.88 0.00 34.96 3.16
2224 5270 7.090173 GGCAGATTTTAACAATCTTAGCACAA 58.910 34.615 15.88 0.00 34.96 3.33
2225 5271 6.208402 TGGCAGATTTTAACAATCTTAGCACA 59.792 34.615 15.88 11.79 34.96 4.57
2226 5272 6.620678 TGGCAGATTTTAACAATCTTAGCAC 58.379 36.000 15.88 10.48 34.96 4.40
2227 5273 6.832520 TGGCAGATTTTAACAATCTTAGCA 57.167 33.333 15.88 7.25 34.96 3.49
2228 5274 8.028938 TCTTTGGCAGATTTTAACAATCTTAGC 58.971 33.333 9.02 9.95 34.96 3.09
2229 5275 9.346725 GTCTTTGGCAGATTTTAACAATCTTAG 57.653 33.333 9.02 3.51 34.96 2.18
2230 5276 9.077885 AGTCTTTGGCAGATTTTAACAATCTTA 57.922 29.630 9.02 0.76 34.96 2.10
2231 5277 7.955918 AGTCTTTGGCAGATTTTAACAATCTT 58.044 30.769 9.02 0.00 34.96 2.40
2232 5278 7.530426 AGTCTTTGGCAGATTTTAACAATCT 57.470 32.000 6.92 6.92 37.47 2.40
2233 5279 9.691362 TTTAGTCTTTGGCAGATTTTAACAATC 57.309 29.630 0.00 3.55 32.60 2.67
2240 5286 9.088987 TCCTAATTTTAGTCTTTGGCAGATTTT 57.911 29.630 0.00 0.00 32.60 1.82
2241 5287 8.650143 TCCTAATTTTAGTCTTTGGCAGATTT 57.350 30.769 0.00 0.00 32.60 2.17
2242 5288 8.650143 TTCCTAATTTTAGTCTTTGGCAGATT 57.350 30.769 0.00 0.00 32.60 2.40
2243 5289 8.650143 TTTCCTAATTTTAGTCTTTGGCAGAT 57.350 30.769 0.00 0.00 32.60 2.90
2244 5290 8.472007 TTTTCCTAATTTTAGTCTTTGGCAGA 57.528 30.769 0.00 0.00 0.00 4.26
2245 5291 7.814587 CCTTTTCCTAATTTTAGTCTTTGGCAG 59.185 37.037 0.00 0.00 0.00 4.85
2246 5292 7.289084 ACCTTTTCCTAATTTTAGTCTTTGGCA 59.711 33.333 0.00 0.00 0.00 4.92
2247 5293 7.667557 ACCTTTTCCTAATTTTAGTCTTTGGC 58.332 34.615 0.00 0.00 0.00 4.52
2263 5309 9.826574 GACCAAATAAAAACTTAACCTTTTCCT 57.173 29.630 0.00 0.00 0.00 3.36
2264 5310 9.602568 TGACCAAATAAAAACTTAACCTTTTCC 57.397 29.630 0.00 0.00 0.00 3.13
2278 5324 9.457436 GGGATTAGACTACTTGACCAAATAAAA 57.543 33.333 0.00 0.00 0.00 1.52
2279 5325 8.050930 GGGGATTAGACTACTTGACCAAATAAA 58.949 37.037 0.00 0.00 0.00 1.40
2280 5326 7.366191 GGGGGATTAGACTACTTGACCAAATAA 60.366 40.741 0.00 0.00 0.00 1.40
2281 5327 6.100714 GGGGGATTAGACTACTTGACCAAATA 59.899 42.308 0.00 0.00 0.00 1.40
2282 5328 5.104067 GGGGGATTAGACTACTTGACCAAAT 60.104 44.000 0.00 0.00 0.00 2.32
2283 5329 4.226620 GGGGGATTAGACTACTTGACCAAA 59.773 45.833 0.00 0.00 0.00 3.28
2284 5330 3.778629 GGGGGATTAGACTACTTGACCAA 59.221 47.826 0.00 0.00 0.00 3.67
2285 5331 3.381335 GGGGGATTAGACTACTTGACCA 58.619 50.000 0.00 0.00 0.00 4.02
2310 5356 7.934665 TGCTGTAGGATCTAGAAGTAAGTCTAG 59.065 40.741 0.00 3.32 45.81 2.43
2311 5357 7.803131 TGCTGTAGGATCTAGAAGTAAGTCTA 58.197 38.462 0.00 0.00 0.00 2.59
2312 5358 6.664714 TGCTGTAGGATCTAGAAGTAAGTCT 58.335 40.000 0.00 0.00 0.00 3.24
2313 5359 6.945938 TGCTGTAGGATCTAGAAGTAAGTC 57.054 41.667 0.00 0.00 0.00 3.01
2314 5360 6.492087 GGATGCTGTAGGATCTAGAAGTAAGT 59.508 42.308 12.21 0.00 41.79 2.24
2315 5361 6.071616 GGGATGCTGTAGGATCTAGAAGTAAG 60.072 46.154 12.21 0.00 41.79 2.34
2316 5362 5.775701 GGGATGCTGTAGGATCTAGAAGTAA 59.224 44.000 12.21 0.00 41.79 2.24
2317 5363 5.075205 AGGGATGCTGTAGGATCTAGAAGTA 59.925 44.000 12.21 0.00 41.79 2.24
2318 5364 4.140805 AGGGATGCTGTAGGATCTAGAAGT 60.141 45.833 12.21 0.00 41.79 3.01
2319 5365 4.415596 AGGGATGCTGTAGGATCTAGAAG 58.584 47.826 12.21 0.00 41.79 2.85
2320 5366 4.477536 AGGGATGCTGTAGGATCTAGAA 57.522 45.455 12.21 0.00 41.79 2.10
2321 5367 4.477536 AAGGGATGCTGTAGGATCTAGA 57.522 45.455 12.21 0.00 41.79 2.43
2322 5368 5.329399 AGTAAGGGATGCTGTAGGATCTAG 58.671 45.833 12.21 0.00 41.79 2.43
2323 5369 5.340891 AGTAAGGGATGCTGTAGGATCTA 57.659 43.478 12.21 0.00 41.79 1.98
2324 5370 4.206244 AGTAAGGGATGCTGTAGGATCT 57.794 45.455 12.21 0.00 41.79 2.75
2325 5371 4.559704 CGAAGTAAGGGATGCTGTAGGATC 60.560 50.000 4.96 4.96 41.43 3.36
2326 5372 3.322254 CGAAGTAAGGGATGCTGTAGGAT 59.678 47.826 0.00 0.00 0.00 3.24
2327 5373 2.693591 CGAAGTAAGGGATGCTGTAGGA 59.306 50.000 0.00 0.00 0.00 2.94
2328 5374 2.224066 CCGAAGTAAGGGATGCTGTAGG 60.224 54.545 0.00 0.00 0.00 3.18
2329 5375 2.693591 TCCGAAGTAAGGGATGCTGTAG 59.306 50.000 0.00 0.00 0.00 2.74
2330 5376 2.742348 TCCGAAGTAAGGGATGCTGTA 58.258 47.619 0.00 0.00 0.00 2.74
2331 5377 1.568504 TCCGAAGTAAGGGATGCTGT 58.431 50.000 0.00 0.00 0.00 4.40
2332 5378 2.158900 ACATCCGAAGTAAGGGATGCTG 60.159 50.000 17.49 0.00 37.09 4.41
2333 5379 2.119495 ACATCCGAAGTAAGGGATGCT 58.881 47.619 17.49 5.07 37.09 3.79
2334 5380 2.213499 CACATCCGAAGTAAGGGATGC 58.787 52.381 17.49 0.00 37.09 3.91
2335 5381 2.158900 AGCACATCCGAAGTAAGGGATG 60.159 50.000 16.31 16.31 37.09 3.51
2336 5382 2.119495 AGCACATCCGAAGTAAGGGAT 58.881 47.619 0.00 0.00 37.09 3.85
2337 5383 1.568504 AGCACATCCGAAGTAAGGGA 58.431 50.000 0.00 0.00 36.61 4.20
2338 5384 2.224066 CCTAGCACATCCGAAGTAAGGG 60.224 54.545 0.00 0.00 0.00 3.95
2339 5385 2.693591 TCCTAGCACATCCGAAGTAAGG 59.306 50.000 0.00 0.00 0.00 2.69
2340 5386 4.551388 GATCCTAGCACATCCGAAGTAAG 58.449 47.826 0.00 0.00 0.00 2.34
2341 5387 3.004419 CGATCCTAGCACATCCGAAGTAA 59.996 47.826 0.00 0.00 0.00 2.24
2342 5388 2.552743 CGATCCTAGCACATCCGAAGTA 59.447 50.000 0.00 0.00 0.00 2.24
2343 5389 1.338337 CGATCCTAGCACATCCGAAGT 59.662 52.381 0.00 0.00 0.00 3.01
2344 5390 1.932604 GCGATCCTAGCACATCCGAAG 60.933 57.143 0.00 0.00 34.19 3.79
2345 5391 0.032130 GCGATCCTAGCACATCCGAA 59.968 55.000 0.00 0.00 34.19 4.30
2346 5392 0.823769 AGCGATCCTAGCACATCCGA 60.824 55.000 0.00 0.00 37.01 4.55
2347 5393 0.665670 CAGCGATCCTAGCACATCCG 60.666 60.000 0.00 0.00 37.01 4.18
2348 5394 0.320247 CCAGCGATCCTAGCACATCC 60.320 60.000 0.00 0.00 37.01 3.51
2349 5395 0.390860 ACCAGCGATCCTAGCACATC 59.609 55.000 0.00 0.00 37.01 3.06
2350 5396 0.105593 CACCAGCGATCCTAGCACAT 59.894 55.000 0.00 0.00 37.01 3.21
2351 5397 1.517361 CACCAGCGATCCTAGCACA 59.483 57.895 0.00 0.00 37.01 4.57
2352 5398 1.884926 GCACCAGCGATCCTAGCAC 60.885 63.158 0.00 0.00 37.01 4.40
2353 5399 2.501128 GCACCAGCGATCCTAGCA 59.499 61.111 0.00 0.00 37.01 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.