Multiple sequence alignment - TraesCS1B01G091900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G091900 chr1B 100.000 4719 0 0 1 4719 94003478 94008196 0.000000e+00 8715.0
1 TraesCS1B01G091900 chr1B 94.737 38 2 0 2639 2676 492329186 492329149 5.100000e-05 60.2
2 TraesCS1B01G091900 chr1D 93.264 4053 174 54 725 4719 58521284 58517273 0.000000e+00 5880.0
3 TraesCS1B01G091900 chr1D 92.453 53 3 1 242 293 22426582 22426530 1.820000e-09 75.0
4 TraesCS1B01G091900 chr1D 94.737 38 2 0 2639 2676 367916584 367916547 5.100000e-05 60.2
5 TraesCS1B01G091900 chr1A 92.215 2402 98 36 723 3062 57213027 57210653 0.000000e+00 3317.0
6 TraesCS1B01G091900 chr1A 89.269 1696 120 31 3049 4719 57210632 57208974 0.000000e+00 2067.0
7 TraesCS1B01G091900 chr6A 87.230 2357 199 51 1611 3933 607806874 607804586 0.000000e+00 2591.0
8 TraesCS1B01G091900 chr7A 87.703 553 46 9 2315 2865 112440079 112440611 4.010000e-175 625.0
9 TraesCS1B01G091900 chr7A 86.215 428 28 16 1855 2267 705167176 705167587 7.250000e-118 435.0
10 TraesCS1B01G091900 chr7A 88.219 365 27 8 1913 2277 112439732 112440080 5.650000e-114 422.0
11 TraesCS1B01G091900 chr7A 84.788 401 40 10 1363 1754 705166759 705167147 2.660000e-102 383.0
12 TraesCS1B01G091900 chr3D 87.654 405 39 3 1363 1758 599204690 599204288 1.200000e-125 460.0
13 TraesCS1B01G091900 chr3D 85.981 428 29 15 1855 2267 599204263 599203852 3.370000e-116 429.0
14 TraesCS1B01G091900 chr4A 86.079 431 31 11 2558 2981 598662292 598661884 2.020000e-118 436.0
15 TraesCS1B01G091900 chr4A 90.000 340 28 2 3251 3586 598661887 598661550 7.250000e-118 435.0
16 TraesCS1B01G091900 chr4A 79.587 387 29 13 1417 1803 598662774 598662438 1.020000e-56 231.0
17 TraesCS1B01G091900 chr4A 95.918 49 1 1 1917 1965 598662338 598662291 1.410000e-10 78.7
18 TraesCS1B01G091900 chr5A 87.234 235 28 2 2739 2972 42983653 42983420 2.800000e-67 267.0
19 TraesCS1B01G091900 chr3B 84.815 270 21 7 1855 2109 803970466 803970730 2.180000e-63 254.0
20 TraesCS1B01G091900 chr3B 89.781 137 14 0 1618 1754 803970301 803970437 4.850000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G091900 chr1B 94003478 94008196 4718 False 8715.000 8715 100.0000 1 4719 1 chr1B.!!$F1 4718
1 TraesCS1B01G091900 chr1D 58517273 58521284 4011 True 5880.000 5880 93.2640 725 4719 1 chr1D.!!$R2 3994
2 TraesCS1B01G091900 chr1A 57208974 57213027 4053 True 2692.000 3317 90.7420 723 4719 2 chr1A.!!$R1 3996
3 TraesCS1B01G091900 chr6A 607804586 607806874 2288 True 2591.000 2591 87.2300 1611 3933 1 chr6A.!!$R1 2322
4 TraesCS1B01G091900 chr7A 112439732 112440611 879 False 523.500 625 87.9610 1913 2865 2 chr7A.!!$F1 952
5 TraesCS1B01G091900 chr7A 705166759 705167587 828 False 409.000 435 85.5015 1363 2267 2 chr7A.!!$F2 904
6 TraesCS1B01G091900 chr3D 599203852 599204690 838 True 444.500 460 86.8175 1363 2267 2 chr3D.!!$R1 904
7 TraesCS1B01G091900 chr4A 598661550 598662774 1224 True 295.175 436 87.8960 1417 3586 4 chr4A.!!$R1 2169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 337 0.033011 ATGGACGAGAGGGTGTAGCT 60.033 55.000 0.00 0.0 0.00 3.32 F
464 465 0.034059 CATCTACAGCCGGATGGGTC 59.966 60.000 25.79 0.0 46.57 4.46 F
520 521 0.035056 GCGCCCATGCCTCCTTATAT 60.035 55.000 0.00 0.0 0.00 0.86 F
813 817 0.457337 GTGCACAAAGCCATAGCAGC 60.457 55.000 13.17 0.0 44.83 5.25 F
2222 2329 0.535335 TTGTAGACATGGACGGCTCC 59.465 55.000 0.00 0.0 37.04 4.70 F
2378 2493 1.333702 CGTGACATTTGGAACACCACG 60.334 52.381 0.00 0.0 39.29 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1468 1499 2.022129 CGGTGTCGTTGGAGCAGAC 61.022 63.158 0.00 0.00 35.61 3.51 R
2362 2477 1.327303 ATGCGTGGTGTTCCAAATGT 58.673 45.000 0.00 0.00 46.15 2.71 R
2416 2532 5.924825 AGATGAAGCAAGCATTTCAAGAAAC 59.075 36.000 0.00 0.00 36.93 2.78 R
2802 2926 1.164041 CCCAGTCCAACGCGTTCTTT 61.164 55.000 23.92 5.21 0.00 2.52 R
3153 3317 0.028505 CGTGTACGATGTACTCCGGG 59.971 60.000 0.00 0.00 43.02 5.73 R
4314 4495 1.004440 GCTTCACCCGTTCTCAGCT 60.004 57.895 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.651387 TGTTTTTGTTGGATCACAGTTCA 57.349 34.783 0.00 0.00 0.00 3.18
23 24 6.030548 TGTTTTTGTTGGATCACAGTTCAA 57.969 33.333 0.00 0.00 0.00 2.69
24 25 6.638610 TGTTTTTGTTGGATCACAGTTCAAT 58.361 32.000 0.00 0.00 0.00 2.57
25 26 7.776107 TGTTTTTGTTGGATCACAGTTCAATA 58.224 30.769 0.00 0.00 0.00 1.90
26 27 7.920151 TGTTTTTGTTGGATCACAGTTCAATAG 59.080 33.333 0.00 0.00 0.00 1.73
27 28 5.627499 TTGTTGGATCACAGTTCAATAGC 57.373 39.130 0.00 0.00 0.00 2.97
28 29 4.009675 TGTTGGATCACAGTTCAATAGCC 58.990 43.478 0.00 0.00 0.00 3.93
29 30 3.998913 TGGATCACAGTTCAATAGCCA 57.001 42.857 0.00 0.00 0.00 4.75
30 31 4.299586 TGGATCACAGTTCAATAGCCAA 57.700 40.909 0.00 0.00 0.00 4.52
31 32 4.661222 TGGATCACAGTTCAATAGCCAAA 58.339 39.130 0.00 0.00 0.00 3.28
32 33 5.076182 TGGATCACAGTTCAATAGCCAAAA 58.924 37.500 0.00 0.00 0.00 2.44
33 34 5.716228 TGGATCACAGTTCAATAGCCAAAAT 59.284 36.000 0.00 0.00 0.00 1.82
34 35 6.889177 TGGATCACAGTTCAATAGCCAAAATA 59.111 34.615 0.00 0.00 0.00 1.40
35 36 7.395772 TGGATCACAGTTCAATAGCCAAAATAA 59.604 33.333 0.00 0.00 0.00 1.40
36 37 7.917505 GGATCACAGTTCAATAGCCAAAATAAG 59.082 37.037 0.00 0.00 0.00 1.73
37 38 7.994425 TCACAGTTCAATAGCCAAAATAAGA 57.006 32.000 0.00 0.00 0.00 2.10
38 39 8.579850 TCACAGTTCAATAGCCAAAATAAGAT 57.420 30.769 0.00 0.00 0.00 2.40
39 40 8.677300 TCACAGTTCAATAGCCAAAATAAGATC 58.323 33.333 0.00 0.00 0.00 2.75
40 41 8.461222 CACAGTTCAATAGCCAAAATAAGATCA 58.539 33.333 0.00 0.00 0.00 2.92
41 42 9.023962 ACAGTTCAATAGCCAAAATAAGATCAA 57.976 29.630 0.00 0.00 0.00 2.57
42 43 9.859427 CAGTTCAATAGCCAAAATAAGATCAAA 57.141 29.630 0.00 0.00 0.00 2.69
60 61 8.668510 AGATCAAATACGATAAACTGCAATCT 57.331 30.769 0.00 0.00 0.00 2.40
61 62 9.764363 AGATCAAATACGATAAACTGCAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
151 152 5.505181 TTTTCTAGGCTTTGAGGTGATCT 57.495 39.130 0.00 0.00 0.00 2.75
152 153 4.744795 TTCTAGGCTTTGAGGTGATCTC 57.255 45.455 0.00 0.00 42.74 2.75
161 162 3.827008 TGAGGTGATCTCATGGTTAGC 57.173 47.619 0.00 0.00 46.71 3.09
162 163 3.106827 TGAGGTGATCTCATGGTTAGCA 58.893 45.455 0.00 0.00 46.71 3.49
163 164 3.713248 TGAGGTGATCTCATGGTTAGCAT 59.287 43.478 0.00 0.00 46.71 3.79
164 165 4.164796 TGAGGTGATCTCATGGTTAGCATT 59.835 41.667 0.00 0.00 46.71 3.56
165 166 4.712476 AGGTGATCTCATGGTTAGCATTC 58.288 43.478 0.00 0.00 0.00 2.67
166 167 3.817647 GGTGATCTCATGGTTAGCATTCC 59.182 47.826 0.00 0.00 0.00 3.01
167 168 4.454678 GTGATCTCATGGTTAGCATTCCA 58.545 43.478 0.00 0.00 38.14 3.53
168 169 4.883585 GTGATCTCATGGTTAGCATTCCAA 59.116 41.667 0.00 0.00 37.27 3.53
169 170 5.357878 GTGATCTCATGGTTAGCATTCCAAA 59.642 40.000 0.00 0.00 37.27 3.28
170 171 6.040166 GTGATCTCATGGTTAGCATTCCAAAT 59.960 38.462 0.00 0.00 37.27 2.32
171 172 6.263842 TGATCTCATGGTTAGCATTCCAAATC 59.736 38.462 0.00 0.00 37.27 2.17
172 173 5.508567 TCTCATGGTTAGCATTCCAAATCA 58.491 37.500 0.00 0.00 37.27 2.57
173 174 5.951148 TCTCATGGTTAGCATTCCAAATCAA 59.049 36.000 0.00 0.00 37.27 2.57
174 175 6.095860 TCTCATGGTTAGCATTCCAAATCAAG 59.904 38.462 0.00 0.00 37.27 3.02
175 176 4.454728 TGGTTAGCATTCCAAATCAAGC 57.545 40.909 0.00 0.00 0.00 4.01
176 177 4.088634 TGGTTAGCATTCCAAATCAAGCT 58.911 39.130 0.00 0.00 36.20 3.74
177 178 4.158394 TGGTTAGCATTCCAAATCAAGCTC 59.842 41.667 0.00 0.00 33.83 4.09
178 179 4.400567 GGTTAGCATTCCAAATCAAGCTCT 59.599 41.667 0.00 0.00 33.83 4.09
179 180 5.449725 GGTTAGCATTCCAAATCAAGCTCTC 60.450 44.000 0.00 0.00 33.83 3.20
180 181 3.965694 AGCATTCCAAATCAAGCTCTCT 58.034 40.909 0.00 0.00 0.00 3.10
181 182 5.108187 AGCATTCCAAATCAAGCTCTCTA 57.892 39.130 0.00 0.00 0.00 2.43
182 183 5.503927 AGCATTCCAAATCAAGCTCTCTAA 58.496 37.500 0.00 0.00 0.00 2.10
183 184 6.127793 AGCATTCCAAATCAAGCTCTCTAAT 58.872 36.000 0.00 0.00 0.00 1.73
184 185 7.285566 AGCATTCCAAATCAAGCTCTCTAATA 58.714 34.615 0.00 0.00 0.00 0.98
185 186 7.228308 AGCATTCCAAATCAAGCTCTCTAATAC 59.772 37.037 0.00 0.00 0.00 1.89
186 187 7.521261 GCATTCCAAATCAAGCTCTCTAATACC 60.521 40.741 0.00 0.00 0.00 2.73
187 188 6.814954 TCCAAATCAAGCTCTCTAATACCT 57.185 37.500 0.00 0.00 0.00 3.08
188 189 7.914427 TCCAAATCAAGCTCTCTAATACCTA 57.086 36.000 0.00 0.00 0.00 3.08
189 190 8.319057 TCCAAATCAAGCTCTCTAATACCTAA 57.681 34.615 0.00 0.00 0.00 2.69
190 191 8.204836 TCCAAATCAAGCTCTCTAATACCTAAC 58.795 37.037 0.00 0.00 0.00 2.34
191 192 7.442666 CCAAATCAAGCTCTCTAATACCTAACC 59.557 40.741 0.00 0.00 0.00 2.85
192 193 6.673839 ATCAAGCTCTCTAATACCTAACCC 57.326 41.667 0.00 0.00 0.00 4.11
193 194 5.525484 TCAAGCTCTCTAATACCTAACCCA 58.475 41.667 0.00 0.00 0.00 4.51
194 195 5.962031 TCAAGCTCTCTAATACCTAACCCAA 59.038 40.000 0.00 0.00 0.00 4.12
195 196 5.873146 AGCTCTCTAATACCTAACCCAAC 57.127 43.478 0.00 0.00 0.00 3.77
196 197 4.654724 AGCTCTCTAATACCTAACCCAACC 59.345 45.833 0.00 0.00 0.00 3.77
197 198 4.202336 GCTCTCTAATACCTAACCCAACCC 60.202 50.000 0.00 0.00 0.00 4.11
198 199 4.301205 TCTCTAATACCTAACCCAACCCC 58.699 47.826 0.00 0.00 0.00 4.95
199 200 4.042174 CTCTAATACCTAACCCAACCCCA 58.958 47.826 0.00 0.00 0.00 4.96
200 201 4.648309 TCTAATACCTAACCCAACCCCAT 58.352 43.478 0.00 0.00 0.00 4.00
201 202 3.680777 AATACCTAACCCAACCCCATG 57.319 47.619 0.00 0.00 0.00 3.66
202 203 2.062773 TACCTAACCCAACCCCATGT 57.937 50.000 0.00 0.00 0.00 3.21
203 204 2.062773 ACCTAACCCAACCCCATGTA 57.937 50.000 0.00 0.00 0.00 2.29
204 205 2.580232 ACCTAACCCAACCCCATGTAT 58.420 47.619 0.00 0.00 0.00 2.29
205 206 2.243736 ACCTAACCCAACCCCATGTATG 59.756 50.000 0.00 0.00 0.00 2.39
206 207 2.306847 CTAACCCAACCCCATGTATGC 58.693 52.381 0.00 0.00 0.00 3.14
207 208 0.325203 AACCCAACCCCATGTATGCC 60.325 55.000 0.00 0.00 0.00 4.40
208 209 1.457455 CCCAACCCCATGTATGCCC 60.457 63.158 0.00 0.00 0.00 5.36
209 210 1.309347 CCAACCCCATGTATGCCCA 59.691 57.895 0.00 0.00 0.00 5.36
210 211 0.105555 CCAACCCCATGTATGCCCAT 60.106 55.000 0.00 0.00 0.00 4.00
211 212 1.042229 CAACCCCATGTATGCCCATG 58.958 55.000 0.00 0.00 41.52 3.66
212 213 0.636101 AACCCCATGTATGCCCATGT 59.364 50.000 7.17 0.00 40.50 3.21
213 214 0.636101 ACCCCATGTATGCCCATGTT 59.364 50.000 7.17 0.00 40.50 2.71
214 215 1.008206 ACCCCATGTATGCCCATGTTT 59.992 47.619 7.17 0.00 40.50 2.83
215 216 2.246067 ACCCCATGTATGCCCATGTTTA 59.754 45.455 7.17 0.00 40.50 2.01
216 217 2.892852 CCCCATGTATGCCCATGTTTAG 59.107 50.000 7.17 0.00 40.50 1.85
217 218 3.436325 CCCCATGTATGCCCATGTTTAGA 60.436 47.826 7.17 0.00 40.50 2.10
218 219 4.214310 CCCATGTATGCCCATGTTTAGAA 58.786 43.478 7.17 0.00 40.50 2.10
219 220 4.279169 CCCATGTATGCCCATGTTTAGAAG 59.721 45.833 7.17 0.00 40.50 2.85
220 221 4.889409 CCATGTATGCCCATGTTTAGAAGT 59.111 41.667 7.17 0.00 40.50 3.01
221 222 6.061441 CCATGTATGCCCATGTTTAGAAGTA 58.939 40.000 7.17 0.00 40.50 2.24
222 223 6.545666 CCATGTATGCCCATGTTTAGAAGTAA 59.454 38.462 7.17 0.00 40.50 2.24
223 224 6.995511 TGTATGCCCATGTTTAGAAGTAAC 57.004 37.500 0.00 0.00 0.00 2.50
224 225 6.717289 TGTATGCCCATGTTTAGAAGTAACT 58.283 36.000 0.00 0.00 0.00 2.24
225 226 7.172342 TGTATGCCCATGTTTAGAAGTAACTT 58.828 34.615 0.00 0.00 0.00 2.66
226 227 7.668052 TGTATGCCCATGTTTAGAAGTAACTTT 59.332 33.333 0.00 0.00 0.00 2.66
227 228 6.325919 TGCCCATGTTTAGAAGTAACTTTG 57.674 37.500 0.00 0.00 0.00 2.77
228 229 5.830991 TGCCCATGTTTAGAAGTAACTTTGT 59.169 36.000 0.00 0.00 0.00 2.83
229 230 6.322712 TGCCCATGTTTAGAAGTAACTTTGTT 59.677 34.615 0.00 0.00 0.00 2.83
230 231 7.147811 TGCCCATGTTTAGAAGTAACTTTGTTT 60.148 33.333 0.00 0.00 0.00 2.83
231 232 7.381408 GCCCATGTTTAGAAGTAACTTTGTTTC 59.619 37.037 0.00 0.00 0.00 2.78
232 233 8.630037 CCCATGTTTAGAAGTAACTTTGTTTCT 58.370 33.333 0.00 0.00 34.51 2.52
298 299 9.435570 ACCACTGATATAGTACAACTTAATCCT 57.564 33.333 0.00 0.00 37.60 3.24
327 328 9.737427 ATTAGCGATAATTAATATGGACGAGAG 57.263 33.333 0.00 0.00 0.00 3.20
328 329 6.565234 AGCGATAATTAATATGGACGAGAGG 58.435 40.000 0.00 0.00 0.00 3.69
329 330 5.749109 GCGATAATTAATATGGACGAGAGGG 59.251 44.000 0.00 0.00 0.00 4.30
330 331 6.627508 GCGATAATTAATATGGACGAGAGGGT 60.628 42.308 0.00 0.00 0.00 4.34
331 332 6.752351 CGATAATTAATATGGACGAGAGGGTG 59.248 42.308 0.00 0.00 0.00 4.61
332 333 5.888982 AATTAATATGGACGAGAGGGTGT 57.111 39.130 0.00 0.00 0.00 4.16
333 334 6.989155 AATTAATATGGACGAGAGGGTGTA 57.011 37.500 0.00 0.00 0.00 2.90
334 335 6.591750 ATTAATATGGACGAGAGGGTGTAG 57.408 41.667 0.00 0.00 0.00 2.74
335 336 1.688772 TATGGACGAGAGGGTGTAGC 58.311 55.000 0.00 0.00 0.00 3.58
336 337 0.033011 ATGGACGAGAGGGTGTAGCT 60.033 55.000 0.00 0.00 0.00 3.32
337 338 0.251653 TGGACGAGAGGGTGTAGCTT 60.252 55.000 0.00 0.00 0.00 3.74
338 339 0.896226 GGACGAGAGGGTGTAGCTTT 59.104 55.000 0.00 0.00 0.00 3.51
339 340 1.275573 GGACGAGAGGGTGTAGCTTTT 59.724 52.381 0.00 0.00 0.00 2.27
340 341 2.494870 GGACGAGAGGGTGTAGCTTTTA 59.505 50.000 0.00 0.00 0.00 1.52
341 342 3.132467 GGACGAGAGGGTGTAGCTTTTAT 59.868 47.826 0.00 0.00 0.00 1.40
342 343 4.382793 GGACGAGAGGGTGTAGCTTTTATT 60.383 45.833 0.00 0.00 0.00 1.40
343 344 4.504858 ACGAGAGGGTGTAGCTTTTATTG 58.495 43.478 0.00 0.00 0.00 1.90
344 345 3.871594 CGAGAGGGTGTAGCTTTTATTGG 59.128 47.826 0.00 0.00 0.00 3.16
345 346 3.621558 AGAGGGTGTAGCTTTTATTGGC 58.378 45.455 0.00 0.00 0.00 4.52
346 347 3.267031 AGAGGGTGTAGCTTTTATTGGCT 59.733 43.478 0.00 0.00 41.92 4.75
347 348 4.017126 GAGGGTGTAGCTTTTATTGGCTT 58.983 43.478 0.00 0.00 39.65 4.35
348 349 5.045140 AGAGGGTGTAGCTTTTATTGGCTTA 60.045 40.000 0.00 0.00 39.65 3.09
349 350 5.576128 AGGGTGTAGCTTTTATTGGCTTAA 58.424 37.500 0.00 0.00 39.65 1.85
350 351 5.652452 AGGGTGTAGCTTTTATTGGCTTAAG 59.348 40.000 0.00 0.00 39.65 1.85
351 352 5.650703 GGGTGTAGCTTTTATTGGCTTAAGA 59.349 40.000 6.67 0.00 39.65 2.10
352 353 6.152154 GGGTGTAGCTTTTATTGGCTTAAGAA 59.848 38.462 6.67 0.00 39.65 2.52
353 354 7.309560 GGGTGTAGCTTTTATTGGCTTAAGAAA 60.310 37.037 6.67 0.00 39.65 2.52
354 355 8.251026 GGTGTAGCTTTTATTGGCTTAAGAAAT 58.749 33.333 6.67 7.76 39.65 2.17
368 369 9.998106 TGGCTTAAGAAATATAACTAGGATGTC 57.002 33.333 6.67 0.00 0.00 3.06
369 370 9.998106 GGCTTAAGAAATATAACTAGGATGTCA 57.002 33.333 6.67 0.00 0.00 3.58
382 383 8.553459 AACTAGGATGTCAACAAAGATACAAG 57.447 34.615 0.00 0.00 0.00 3.16
383 384 7.907389 ACTAGGATGTCAACAAAGATACAAGA 58.093 34.615 0.00 0.00 0.00 3.02
384 385 8.375506 ACTAGGATGTCAACAAAGATACAAGAA 58.624 33.333 0.00 0.00 0.00 2.52
385 386 9.219603 CTAGGATGTCAACAAAGATACAAGAAA 57.780 33.333 0.00 0.00 0.00 2.52
386 387 7.875971 AGGATGTCAACAAAGATACAAGAAAC 58.124 34.615 0.00 0.00 0.00 2.78
387 388 6.797033 GGATGTCAACAAAGATACAAGAAACG 59.203 38.462 0.00 0.00 0.00 3.60
388 389 6.912203 TGTCAACAAAGATACAAGAAACGA 57.088 33.333 0.00 0.00 0.00 3.85
389 390 7.310072 TGTCAACAAAGATACAAGAAACGAA 57.690 32.000 0.00 0.00 0.00 3.85
390 391 7.925993 TGTCAACAAAGATACAAGAAACGAAT 58.074 30.769 0.00 0.00 0.00 3.34
391 392 9.047371 TGTCAACAAAGATACAAGAAACGAATA 57.953 29.630 0.00 0.00 0.00 1.75
392 393 9.530129 GTCAACAAAGATACAAGAAACGAATAG 57.470 33.333 0.00 0.00 0.00 1.73
393 394 9.483916 TCAACAAAGATACAAGAAACGAATAGA 57.516 29.630 0.00 0.00 0.00 1.98
396 397 9.706691 ACAAAGATACAAGAAACGAATAGAAGA 57.293 29.630 0.00 0.00 0.00 2.87
445 446 7.783090 TTCATGTTCTATCATCTTCAAGAGC 57.217 36.000 0.00 0.00 0.00 4.09
446 447 6.881570 TCATGTTCTATCATCTTCAAGAGCA 58.118 36.000 0.00 0.00 34.38 4.26
447 448 7.506971 TCATGTTCTATCATCTTCAAGAGCAT 58.493 34.615 0.00 0.00 39.54 3.79
448 449 7.656542 TCATGTTCTATCATCTTCAAGAGCATC 59.343 37.037 0.00 0.00 37.68 3.91
460 461 3.207677 GAGCATCTACAGCCGGATG 57.792 57.895 20.26 20.26 41.36 3.51
461 462 0.320247 GAGCATCTACAGCCGGATGG 60.320 60.000 25.79 7.19 39.52 3.51
462 463 1.302033 GCATCTACAGCCGGATGGG 60.302 63.158 25.79 16.19 39.52 4.00
464 465 0.034059 CATCTACAGCCGGATGGGTC 59.966 60.000 25.79 0.00 46.57 4.46
465 466 1.122019 ATCTACAGCCGGATGGGTCC 61.122 60.000 25.79 0.00 46.57 4.46
466 467 1.762460 CTACAGCCGGATGGGTCCT 60.762 63.158 25.79 4.62 46.57 3.85
467 468 2.032860 CTACAGCCGGATGGGTCCTG 62.033 65.000 25.79 12.91 46.57 3.86
478 479 3.813150 GGTCCTGCCCTTCAGTCT 58.187 61.111 0.00 0.00 41.25 3.24
479 480 1.298014 GGTCCTGCCCTTCAGTCTG 59.702 63.158 0.00 0.00 41.25 3.51
480 481 1.194781 GGTCCTGCCCTTCAGTCTGA 61.195 60.000 0.00 0.00 41.25 3.27
481 482 0.036858 GTCCTGCCCTTCAGTCTGAC 60.037 60.000 0.78 0.00 41.25 3.51
482 483 0.471780 TCCTGCCCTTCAGTCTGACA 60.472 55.000 10.88 0.00 41.25 3.58
483 484 0.617413 CCTGCCCTTCAGTCTGACAT 59.383 55.000 10.88 0.00 41.25 3.06
484 485 1.678123 CCTGCCCTTCAGTCTGACATG 60.678 57.143 10.88 5.83 41.25 3.21
485 486 1.277273 CTGCCCTTCAGTCTGACATGA 59.723 52.381 10.88 8.03 38.02 3.07
486 487 1.002430 TGCCCTTCAGTCTGACATGAC 59.998 52.381 10.88 0.00 37.23 3.06
487 488 2.001812 CCCTTCAGTCTGACATGACG 57.998 55.000 10.88 8.27 41.47 4.35
488 489 1.404717 CCCTTCAGTCTGACATGACGG 60.405 57.143 10.88 15.34 41.47 4.79
489 490 1.546029 CCTTCAGTCTGACATGACGGA 59.454 52.381 18.92 0.00 41.47 4.69
490 491 2.600731 CTTCAGTCTGACATGACGGAC 58.399 52.381 24.09 24.09 43.91 4.79
491 492 0.521735 TCAGTCTGACATGACGGACG 59.478 55.000 24.76 20.22 46.85 4.79
492 493 1.073216 CAGTCTGACATGACGGACGC 61.073 60.000 24.76 8.54 46.85 5.19
493 494 2.152699 GTCTGACATGACGGACGCG 61.153 63.158 18.95 3.53 36.62 6.01
494 495 2.126463 CTGACATGACGGACGCGT 60.126 61.111 13.85 13.85 0.00 6.01
495 496 2.126618 TGACATGACGGACGCGTC 60.127 61.111 30.67 30.67 39.16 5.19
496 497 2.879462 GACATGACGGACGCGTCC 60.879 66.667 41.75 41.75 46.18 4.79
517 518 4.545706 CGCGCCCATGCCTCCTTA 62.546 66.667 0.00 0.00 0.00 2.69
518 519 2.113986 GCGCCCATGCCTCCTTAT 59.886 61.111 0.00 0.00 0.00 1.73
519 520 1.374947 GCGCCCATGCCTCCTTATA 59.625 57.895 0.00 0.00 0.00 0.98
520 521 0.035056 GCGCCCATGCCTCCTTATAT 60.035 55.000 0.00 0.00 0.00 0.86
521 522 2.014068 GCGCCCATGCCTCCTTATATC 61.014 57.143 0.00 0.00 0.00 1.63
522 523 1.407437 CGCCCATGCCTCCTTATATCC 60.407 57.143 0.00 0.00 0.00 2.59
523 524 1.407437 GCCCATGCCTCCTTATATCCG 60.407 57.143 0.00 0.00 0.00 4.18
524 525 2.187958 CCCATGCCTCCTTATATCCGA 58.812 52.381 0.00 0.00 0.00 4.55
525 526 2.774234 CCCATGCCTCCTTATATCCGAT 59.226 50.000 0.00 0.00 0.00 4.18
526 527 3.181461 CCCATGCCTCCTTATATCCGATC 60.181 52.174 0.00 0.00 0.00 3.69
527 528 3.181461 CCATGCCTCCTTATATCCGATCC 60.181 52.174 0.00 0.00 0.00 3.36
528 529 3.184382 TGCCTCCTTATATCCGATCCA 57.816 47.619 0.00 0.00 0.00 3.41
529 530 3.099905 TGCCTCCTTATATCCGATCCAG 58.900 50.000 0.00 0.00 0.00 3.86
530 531 3.245622 TGCCTCCTTATATCCGATCCAGA 60.246 47.826 0.00 0.00 0.00 3.86
531 532 3.964031 GCCTCCTTATATCCGATCCAGAT 59.036 47.826 0.00 0.00 0.00 2.90
532 533 5.141182 GCCTCCTTATATCCGATCCAGATA 58.859 45.833 3.30 3.30 0.00 1.98
533 534 5.777732 GCCTCCTTATATCCGATCCAGATAT 59.222 44.000 14.28 14.28 39.62 1.63
534 535 6.268847 GCCTCCTTATATCCGATCCAGATATT 59.731 42.308 14.81 4.16 37.88 1.28
535 536 7.202047 GCCTCCTTATATCCGATCCAGATATTT 60.202 40.741 14.81 0.61 37.88 1.40
536 537 8.147058 CCTCCTTATATCCGATCCAGATATTTG 58.853 40.741 14.81 9.81 37.88 2.32
537 538 7.500992 TCCTTATATCCGATCCAGATATTTGC 58.499 38.462 14.81 0.00 37.88 3.68
538 539 7.125659 TCCTTATATCCGATCCAGATATTTGCA 59.874 37.037 14.81 0.00 37.88 4.08
539 540 7.440556 CCTTATATCCGATCCAGATATTTGCAG 59.559 40.741 14.81 8.60 37.88 4.41
540 541 3.407424 TCCGATCCAGATATTTGCAGG 57.593 47.619 0.00 0.00 0.00 4.85
541 542 2.972021 TCCGATCCAGATATTTGCAGGA 59.028 45.455 0.00 0.00 0.00 3.86
542 543 3.007290 TCCGATCCAGATATTTGCAGGAG 59.993 47.826 0.00 0.00 0.00 3.69
543 544 3.332919 CGATCCAGATATTTGCAGGAGG 58.667 50.000 0.00 0.00 0.00 4.30
544 545 3.683802 GATCCAGATATTTGCAGGAGGG 58.316 50.000 0.00 0.00 0.00 4.30
545 546 1.776667 TCCAGATATTTGCAGGAGGGG 59.223 52.381 0.00 0.00 0.00 4.79
546 547 1.202976 CCAGATATTTGCAGGAGGGGG 60.203 57.143 0.00 0.00 0.00 5.40
561 562 3.036431 GGGGGAACTTTGTGAGTGG 57.964 57.895 0.00 0.00 39.00 4.00
562 563 0.539669 GGGGGAACTTTGTGAGTGGG 60.540 60.000 0.00 0.00 39.00 4.61
563 564 1.179174 GGGGAACTTTGTGAGTGGGC 61.179 60.000 0.00 0.00 39.00 5.36
564 565 1.179174 GGGAACTTTGTGAGTGGGCC 61.179 60.000 0.00 0.00 39.00 5.80
565 566 1.515521 GGAACTTTGTGAGTGGGCCG 61.516 60.000 0.00 0.00 39.00 6.13
566 567 0.818040 GAACTTTGTGAGTGGGCCGT 60.818 55.000 0.00 0.00 39.00 5.68
567 568 0.818040 AACTTTGTGAGTGGGCCGTC 60.818 55.000 0.00 0.00 39.00 4.79
568 569 1.966451 CTTTGTGAGTGGGCCGTCC 60.966 63.158 0.00 0.00 0.00 4.79
569 570 3.818121 TTTGTGAGTGGGCCGTCCG 62.818 63.158 0.00 0.00 38.76 4.79
571 572 4.736896 GTGAGTGGGCCGTCCGTC 62.737 72.222 0.00 0.00 38.76 4.79
594 595 1.165270 ACGTAGTGGGCATTTGAAGC 58.835 50.000 0.00 0.00 42.51 3.86
595 596 1.271379 ACGTAGTGGGCATTTGAAGCT 60.271 47.619 0.00 0.00 42.51 3.74
596 597 2.027561 ACGTAGTGGGCATTTGAAGCTA 60.028 45.455 0.00 0.00 42.51 3.32
597 598 3.206150 CGTAGTGGGCATTTGAAGCTAT 58.794 45.455 0.00 0.00 0.00 2.97
598 599 4.141801 ACGTAGTGGGCATTTGAAGCTATA 60.142 41.667 0.00 0.00 42.51 1.31
599 600 4.449068 CGTAGTGGGCATTTGAAGCTATAG 59.551 45.833 0.00 0.00 0.00 1.31
600 601 4.510167 AGTGGGCATTTGAAGCTATAGT 57.490 40.909 0.84 0.00 0.00 2.12
601 602 4.455606 AGTGGGCATTTGAAGCTATAGTC 58.544 43.478 0.84 0.00 0.00 2.59
602 603 4.080356 AGTGGGCATTTGAAGCTATAGTCA 60.080 41.667 0.84 0.00 0.00 3.41
603 604 4.640201 GTGGGCATTTGAAGCTATAGTCAA 59.360 41.667 0.84 1.78 31.99 3.18
604 605 5.125417 GTGGGCATTTGAAGCTATAGTCAAA 59.875 40.000 16.54 16.54 45.20 2.69
605 606 5.714333 TGGGCATTTGAAGCTATAGTCAAAA 59.286 36.000 17.59 7.99 44.52 2.44
606 607 6.127647 TGGGCATTTGAAGCTATAGTCAAAAG 60.128 38.462 17.59 15.18 44.52 2.27
607 608 6.095440 GGGCATTTGAAGCTATAGTCAAAAGA 59.905 38.462 17.59 2.07 44.52 2.52
608 609 7.362920 GGGCATTTGAAGCTATAGTCAAAAGAA 60.363 37.037 17.59 1.79 44.52 2.52
609 610 8.028938 GGCATTTGAAGCTATAGTCAAAAGAAA 58.971 33.333 17.59 1.51 44.52 2.52
610 611 9.410556 GCATTTGAAGCTATAGTCAAAAGAAAA 57.589 29.630 17.59 0.95 44.52 2.29
633 634 5.597813 AAAAGTTGTAGATGCTCGAACAG 57.402 39.130 0.00 0.00 0.00 3.16
634 635 4.521130 AAGTTGTAGATGCTCGAACAGA 57.479 40.909 0.00 0.00 0.00 3.41
635 636 4.727507 AGTTGTAGATGCTCGAACAGAT 57.272 40.909 0.00 0.00 0.00 2.90
636 637 5.078411 AGTTGTAGATGCTCGAACAGATT 57.922 39.130 0.00 0.00 0.00 2.40
637 638 6.208988 AGTTGTAGATGCTCGAACAGATTA 57.791 37.500 0.00 0.00 0.00 1.75
638 639 6.269315 AGTTGTAGATGCTCGAACAGATTAG 58.731 40.000 0.00 0.00 0.00 1.73
639 640 5.836821 TGTAGATGCTCGAACAGATTAGT 57.163 39.130 0.00 0.00 0.00 2.24
640 641 6.937436 TGTAGATGCTCGAACAGATTAGTA 57.063 37.500 0.00 0.00 0.00 1.82
641 642 6.960468 TGTAGATGCTCGAACAGATTAGTAG 58.040 40.000 0.00 0.00 0.00 2.57
642 643 6.766467 TGTAGATGCTCGAACAGATTAGTAGA 59.234 38.462 0.00 0.00 0.00 2.59
643 644 6.892658 AGATGCTCGAACAGATTAGTAGAT 57.107 37.500 0.00 0.00 0.00 1.98
644 645 7.283625 AGATGCTCGAACAGATTAGTAGATT 57.716 36.000 0.00 0.00 0.00 2.40
645 646 7.367285 AGATGCTCGAACAGATTAGTAGATTC 58.633 38.462 0.00 0.00 0.00 2.52
646 647 6.701145 TGCTCGAACAGATTAGTAGATTCT 57.299 37.500 0.00 0.00 0.00 2.40
647 648 6.730175 TGCTCGAACAGATTAGTAGATTCTC 58.270 40.000 0.00 0.00 0.00 2.87
648 649 6.318900 TGCTCGAACAGATTAGTAGATTCTCA 59.681 38.462 0.00 0.00 0.00 3.27
649 650 6.855914 GCTCGAACAGATTAGTAGATTCTCAG 59.144 42.308 0.00 0.00 0.00 3.35
650 651 7.254966 GCTCGAACAGATTAGTAGATTCTCAGA 60.255 40.741 0.00 0.00 0.00 3.27
651 652 8.507524 TCGAACAGATTAGTAGATTCTCAGAA 57.492 34.615 0.00 0.00 0.00 3.02
652 653 8.957466 TCGAACAGATTAGTAGATTCTCAGAAA 58.043 33.333 0.00 0.00 0.00 2.52
653 654 9.232082 CGAACAGATTAGTAGATTCTCAGAAAG 57.768 37.037 0.00 0.00 0.00 2.62
663 664 9.693739 AGTAGATTCTCAGAAAGAAGATGTAGA 57.306 33.333 0.00 0.00 46.95 2.59
677 678 8.594881 AGAAGATGTAGATAAATAGCAAACCG 57.405 34.615 0.00 0.00 0.00 4.44
678 679 7.657761 AGAAGATGTAGATAAATAGCAAACCGG 59.342 37.037 0.00 0.00 0.00 5.28
679 680 7.062749 AGATGTAGATAAATAGCAAACCGGA 57.937 36.000 9.46 0.00 0.00 5.14
680 681 7.680730 AGATGTAGATAAATAGCAAACCGGAT 58.319 34.615 9.46 0.00 0.00 4.18
681 682 7.604164 AGATGTAGATAAATAGCAAACCGGATG 59.396 37.037 9.46 8.22 0.00 3.51
682 683 6.588204 TGTAGATAAATAGCAAACCGGATGT 58.412 36.000 9.46 0.66 0.00 3.06
683 684 7.051623 TGTAGATAAATAGCAAACCGGATGTT 58.948 34.615 9.46 7.58 39.43 2.71
692 693 3.433306 AAACCGGATGTTTGGATCTCA 57.567 42.857 9.46 0.00 45.38 3.27
693 694 3.433306 AACCGGATGTTTGGATCTCAA 57.567 42.857 9.46 0.00 31.47 3.02
694 695 3.433306 ACCGGATGTTTGGATCTCAAA 57.567 42.857 9.46 5.55 42.50 2.69
695 696 3.968265 ACCGGATGTTTGGATCTCAAAT 58.032 40.909 9.46 0.00 45.79 2.32
696 697 4.344104 ACCGGATGTTTGGATCTCAAATT 58.656 39.130 9.46 4.59 45.79 1.82
697 698 4.772100 ACCGGATGTTTGGATCTCAAATTT 59.228 37.500 9.46 0.00 45.79 1.82
698 699 5.949354 ACCGGATGTTTGGATCTCAAATTTA 59.051 36.000 9.46 4.29 45.79 1.40
699 700 6.607198 ACCGGATGTTTGGATCTCAAATTTAT 59.393 34.615 9.46 7.62 45.79 1.40
700 701 6.919662 CCGGATGTTTGGATCTCAAATTTATG 59.080 38.462 0.00 4.54 45.79 1.90
701 702 7.416664 CCGGATGTTTGGATCTCAAATTTATGT 60.417 37.037 0.00 0.00 45.79 2.29
702 703 7.433131 CGGATGTTTGGATCTCAAATTTATGTG 59.567 37.037 11.07 0.00 45.79 3.21
703 704 8.469200 GGATGTTTGGATCTCAAATTTATGTGA 58.531 33.333 11.07 0.00 45.79 3.58
704 705 9.512435 GATGTTTGGATCTCAAATTTATGTGAG 57.488 33.333 11.07 3.88 45.79 3.51
705 706 8.408043 TGTTTGGATCTCAAATTTATGTGAGT 57.592 30.769 9.22 0.00 45.79 3.41
706 707 8.298854 TGTTTGGATCTCAAATTTATGTGAGTG 58.701 33.333 9.22 0.00 45.79 3.51
707 708 7.395190 TTGGATCTCAAATTTATGTGAGTGG 57.605 36.000 9.22 0.00 41.69 4.00
708 709 6.720309 TGGATCTCAAATTTATGTGAGTGGA 58.280 36.000 9.22 0.00 41.69 4.02
709 710 7.348815 TGGATCTCAAATTTATGTGAGTGGAT 58.651 34.615 9.22 0.00 41.69 3.41
710 711 7.500227 TGGATCTCAAATTTATGTGAGTGGATC 59.500 37.037 9.22 6.12 41.69 3.36
711 712 7.500227 GGATCTCAAATTTATGTGAGTGGATCA 59.500 37.037 9.22 0.00 41.69 2.92
735 736 6.797033 CACAGGAGTTTTCTTGCTTAATTACG 59.203 38.462 0.00 0.00 33.97 3.18
739 740 6.087687 GGAGTTTTCTTGCTTAATTACGTTGC 59.912 38.462 0.00 0.00 0.00 4.17
801 805 1.174078 CCTGCCACATCAGTGCACAA 61.174 55.000 21.04 7.05 44.53 3.33
803 807 0.669619 TGCCACATCAGTGCACAAAG 59.330 50.000 21.04 8.65 44.53 2.77
804 808 0.665369 GCCACATCAGTGCACAAAGC 60.665 55.000 21.04 7.87 44.53 3.51
806 810 0.669619 CACATCAGTGCACAAAGCCA 59.330 50.000 21.04 0.00 44.83 4.75
807 811 1.271379 CACATCAGTGCACAAAGCCAT 59.729 47.619 21.04 0.00 44.83 4.40
808 812 2.488937 CACATCAGTGCACAAAGCCATA 59.511 45.455 21.04 0.00 44.83 2.74
809 813 2.751259 ACATCAGTGCACAAAGCCATAG 59.249 45.455 21.04 1.26 44.83 2.23
810 814 1.167851 TCAGTGCACAAAGCCATAGC 58.832 50.000 21.04 0.00 44.83 2.97
811 815 0.883153 CAGTGCACAAAGCCATAGCA 59.117 50.000 21.04 0.00 44.83 3.49
812 816 1.135489 CAGTGCACAAAGCCATAGCAG 60.135 52.381 21.04 0.00 44.83 4.24
813 817 0.457337 GTGCACAAAGCCATAGCAGC 60.457 55.000 13.17 0.00 44.83 5.25
848 856 2.149578 CTTGAAGCAGTTCAGACCTGG 58.850 52.381 0.00 0.00 43.66 4.45
916 928 4.467084 GATCCACCGCGCCCAGAA 62.467 66.667 0.00 0.00 0.00 3.02
917 929 4.473520 ATCCACCGCGCCCAGAAG 62.474 66.667 0.00 0.00 0.00 2.85
941 959 1.933115 AACAATCATTCACCCGCGCC 61.933 55.000 0.00 0.00 0.00 6.53
1014 1036 3.747976 GCCATGCAACCACGTCCC 61.748 66.667 0.00 0.00 0.00 4.46
1160 1188 4.920112 CACGGTGTGCGGGTCCAA 62.920 66.667 0.00 0.00 0.00 3.53
1236 1264 1.800315 CTACCAGAACGTGACGCGG 60.800 63.158 12.47 3.13 46.52 6.46
1829 1869 1.135083 CGGGTCATCCAGTGAGTACAC 60.135 57.143 0.00 0.00 46.24 2.90
1976 2067 6.095300 TGAAACGCCATGAAATATGACATCTT 59.905 34.615 0.00 0.00 0.00 2.40
1977 2068 6.455360 AACGCCATGAAATATGACATCTTT 57.545 33.333 0.00 0.00 0.00 2.52
1978 2069 6.064846 ACGCCATGAAATATGACATCTTTC 57.935 37.500 15.77 15.77 0.00 2.62
2124 2222 1.436336 GACCTCCACGACGGTATGG 59.564 63.158 0.00 4.83 37.32 2.74
2145 2243 4.806247 TGGAAAACTGTAAAATTGCAACCG 59.194 37.500 0.00 0.00 0.00 4.44
2222 2329 0.535335 TTGTAGACATGGACGGCTCC 59.465 55.000 0.00 0.00 37.04 4.70
2248 2355 2.158711 AGATCATCCGCACCATCATGTT 60.159 45.455 0.00 0.00 0.00 2.71
2362 2477 3.404224 TTACAAGGTACATTGCCGTGA 57.596 42.857 19.55 0.00 38.54 4.35
2378 2493 1.333702 CGTGACATTTGGAACACCACG 60.334 52.381 0.00 0.00 39.29 4.94
2416 2532 6.588373 TGCAACACTGAATTTCATTGATCATG 59.412 34.615 19.90 13.92 32.25 3.07
2443 2559 4.696899 TGAAATGCTTGCTTCATCTGAG 57.303 40.909 0.00 0.00 0.00 3.35
2719 2839 5.405935 AATAAAACAACCCCTGCATTCTC 57.594 39.130 0.00 0.00 0.00 2.87
2720 2840 2.683211 AAACAACCCCTGCATTCTCT 57.317 45.000 0.00 0.00 0.00 3.10
2775 2899 7.081526 AGATTTCATTTTGACTGATCTTCCG 57.918 36.000 0.00 0.00 0.00 4.30
2777 2901 7.824289 AGATTTCATTTTGACTGATCTTCCGTA 59.176 33.333 0.00 0.00 0.00 4.02
2779 2903 6.037786 TCATTTTGACTGATCTTCCGTACT 57.962 37.500 0.00 0.00 0.00 2.73
2802 2926 2.357323 TGTTGATGCAGACGCTTTCAAA 59.643 40.909 0.00 0.00 40.33 2.69
2955 3082 3.034635 TGAGAGGTTCAGGCCTAAGATC 58.965 50.000 3.98 0.00 39.34 2.75
3015 3142 4.335647 CACCTCAGCACCGGCCTT 62.336 66.667 0.00 0.00 42.56 4.35
3044 3172 6.377327 AACATTGTAAGTTCACTTGTCCAG 57.623 37.500 2.26 0.00 37.40 3.86
3047 3175 6.601613 ACATTGTAAGTTCACTTGTCCAGAAA 59.398 34.615 2.26 0.00 37.40 2.52
3079 3241 7.436118 TCTGATCAAGGGTTGAAGAAAATTTG 58.564 34.615 0.00 0.00 43.95 2.32
3113 3277 5.091431 GTGCAATGTGTCTGAAGAAATAGC 58.909 41.667 0.00 0.00 0.00 2.97
3121 3285 4.040339 TGTCTGAAGAAATAGCACTGACCA 59.960 41.667 0.00 0.00 0.00 4.02
3122 3286 5.181748 GTCTGAAGAAATAGCACTGACCAT 58.818 41.667 0.00 0.00 0.00 3.55
3135 3299 4.261322 GCACTGACCATATGCCTACATTTG 60.261 45.833 0.00 0.00 37.74 2.32
3153 3317 2.566833 TGTGCAGTGGATATATGGCC 57.433 50.000 0.00 0.00 0.00 5.36
3168 3332 1.829533 GGCCCCGGAGTACATCGTA 60.830 63.158 0.73 0.00 0.00 3.43
3316 3484 6.849697 ACAGGTATATTCTCCCATTTCACCTA 59.150 38.462 0.00 0.00 32.71 3.08
3317 3485 7.517604 ACAGGTATATTCTCCCATTTCACCTAT 59.482 37.037 0.00 0.00 32.71 2.57
3318 3486 7.826252 CAGGTATATTCTCCCATTTCACCTATG 59.174 40.741 0.00 0.00 32.71 2.23
3409 3579 2.663520 CACTACAACGCCGGCACA 60.664 61.111 28.98 4.67 0.00 4.57
3485 3655 0.179029 CAAGGTGTTCCAAGTCGGGT 60.179 55.000 0.00 0.00 35.89 5.28
3559 3733 0.326264 AGATGCTGGGAAGTGGTGAC 59.674 55.000 0.00 0.00 0.00 3.67
3566 3740 1.705997 GGGAAGTGGTGACAGGGTGT 61.706 60.000 0.00 0.00 44.46 4.16
3726 3900 1.474077 GCAGGCCAGGTGATTAACAAG 59.526 52.381 5.01 0.00 0.00 3.16
3727 3901 2.879756 GCAGGCCAGGTGATTAACAAGA 60.880 50.000 5.01 0.00 0.00 3.02
3732 3906 2.755103 CCAGGTGATTAACAAGAAGGGC 59.245 50.000 0.00 0.00 0.00 5.19
3847 4021 7.148407 CCCTGTTTGTAAGATGTAAGTAAGCAG 60.148 40.741 0.00 0.00 0.00 4.24
3915 4090 0.898320 ACTCCTCCAACACCATCTCG 59.102 55.000 0.00 0.00 0.00 4.04
4033 4210 5.520376 AAGTCAGGGAATTCACACAAAAG 57.480 39.130 11.02 0.00 0.00 2.27
4038 4215 5.420421 TCAGGGAATTCACACAAAAGACAAA 59.580 36.000 11.02 0.00 0.00 2.83
4039 4216 6.071108 TCAGGGAATTCACACAAAAGACAAAA 60.071 34.615 11.02 0.00 0.00 2.44
4040 4217 6.035975 CAGGGAATTCACACAAAAGACAAAAC 59.964 38.462 11.02 0.00 0.00 2.43
4041 4218 5.872070 GGGAATTCACACAAAAGACAAAACA 59.128 36.000 7.93 0.00 0.00 2.83
4042 4219 6.183360 GGGAATTCACACAAAAGACAAAACAC 60.183 38.462 7.93 0.00 0.00 3.32
4043 4220 6.367422 GGAATTCACACAAAAGACAAAACACA 59.633 34.615 7.93 0.00 0.00 3.72
4044 4221 7.095439 GGAATTCACACAAAAGACAAAACACAA 60.095 33.333 7.93 0.00 0.00 3.33
4045 4222 6.517914 TTCACACAAAAGACAAAACACAAC 57.482 33.333 0.00 0.00 0.00 3.32
4046 4223 5.592054 TCACACAAAAGACAAAACACAACA 58.408 33.333 0.00 0.00 0.00 3.33
4047 4224 6.042777 TCACACAAAAGACAAAACACAACAA 58.957 32.000 0.00 0.00 0.00 2.83
4048 4225 6.535150 TCACACAAAAGACAAAACACAACAAA 59.465 30.769 0.00 0.00 0.00 2.83
4058 4235 6.842163 ACAAAACACAACAAACAAACAAACA 58.158 28.000 0.00 0.00 0.00 2.83
4202 4382 5.332883 CGATGATTAACAGAGAGCGATTTGG 60.333 44.000 0.00 0.00 0.00 3.28
4225 4405 3.838271 GAGATGGACCGGCAGCGA 61.838 66.667 0.00 0.00 0.00 4.93
4254 4434 2.095415 GGAAAATCGTTGGGCTGTGTAC 60.095 50.000 0.00 0.00 0.00 2.90
4260 4440 2.331893 TTGGGCTGTGTACGCATGC 61.332 57.895 10.02 7.91 0.00 4.06
4287 4467 1.000955 GATGTGGTCTGGTCGTTGTCT 59.999 52.381 0.00 0.00 0.00 3.41
4434 4627 4.095632 TCTTTTTGTTTCACTCATGCGACA 59.904 37.500 0.00 0.00 0.00 4.35
4454 4647 6.420903 GCGACATGTATGCAGTATTCTCTTTA 59.579 38.462 15.61 0.00 0.00 1.85
4465 4658 8.847196 TGCAGTATTCTCTTTAGACACGTATAT 58.153 33.333 0.00 0.00 0.00 0.86
4473 4666 6.432936 TCTTTAGACACGTATATACTTGCCG 58.567 40.000 16.91 4.07 0.00 5.69
4510 4705 3.193479 GCACCACCAATTCCCTAAAAGAG 59.807 47.826 0.00 0.00 0.00 2.85
4513 4708 4.026052 CCACCAATTCCCTAAAAGAGCAT 58.974 43.478 0.00 0.00 0.00 3.79
4514 4709 5.200483 CCACCAATTCCCTAAAAGAGCATA 58.800 41.667 0.00 0.00 0.00 3.14
4515 4710 5.835280 CCACCAATTCCCTAAAAGAGCATAT 59.165 40.000 0.00 0.00 0.00 1.78
4522 4717 6.688073 TCCCTAAAAGAGCATATAGGAAGG 57.312 41.667 0.00 0.00 37.67 3.46
4523 4718 6.151049 TCCCTAAAAGAGCATATAGGAAGGT 58.849 40.000 0.00 0.00 37.67 3.50
4556 4751 1.560505 AAAATGTGGGACCATGGCTC 58.439 50.000 13.04 8.70 0.00 4.70
4589 4785 3.564225 GGACCGACAACAACTCTCAAAAT 59.436 43.478 0.00 0.00 0.00 1.82
4596 4792 7.041644 CCGACAACAACTCTCAAAATAGGTTTA 60.042 37.037 0.00 0.00 0.00 2.01
4598 4794 8.514330 ACAACAACTCTCAAAATAGGTTTACA 57.486 30.769 0.00 0.00 0.00 2.41
4611 4810 3.877559 AGGTTTACACCCCGCTTTATAC 58.122 45.455 0.00 0.00 45.63 1.47
4618 4817 7.934855 TTACACCCCGCTTTATACATAAAAA 57.065 32.000 0.00 0.00 32.39 1.94
4619 4818 6.198650 ACACCCCGCTTTATACATAAAAAC 57.801 37.500 0.00 0.00 32.39 2.43
4620 4819 5.125900 ACACCCCGCTTTATACATAAAAACC 59.874 40.000 0.00 0.00 32.39 3.27
4621 4820 5.125739 CACCCCGCTTTATACATAAAAACCA 59.874 40.000 0.00 0.00 32.39 3.67
4626 4827 8.407064 CCCGCTTTATACATAAAAACCAACATA 58.593 33.333 0.00 0.00 32.39 2.29
4642 4843 6.855836 ACCAACATATCTATGCAACAAGTTG 58.144 36.000 8.53 8.53 43.14 3.16
4661 4862 7.093945 ACAAGTTGAAGTACCACACTGAAAATT 60.094 33.333 10.54 0.00 37.63 1.82
4662 4863 8.402472 CAAGTTGAAGTACCACACTGAAAATTA 58.598 33.333 0.00 0.00 37.63 1.40
4677 4878 5.253330 TGAAAATTAAGTAGTCTGCTGGGG 58.747 41.667 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.651387 TGAACTGTGATCCAACAAAAACA 57.349 34.783 0.00 0.00 0.00 2.83
1 2 7.096065 GCTATTGAACTGTGATCCAACAAAAAC 60.096 37.037 0.00 0.00 0.00 2.43
2 3 6.922957 GCTATTGAACTGTGATCCAACAAAAA 59.077 34.615 0.00 0.00 0.00 1.94
3 4 6.446318 GCTATTGAACTGTGATCCAACAAAA 58.554 36.000 0.00 0.00 0.00 2.44
4 5 5.048083 GGCTATTGAACTGTGATCCAACAAA 60.048 40.000 0.00 0.00 0.00 2.83
5 6 4.458989 GGCTATTGAACTGTGATCCAACAA 59.541 41.667 0.00 0.00 0.00 2.83
6 7 4.009675 GGCTATTGAACTGTGATCCAACA 58.990 43.478 0.00 0.00 0.00 3.33
7 8 4.009675 TGGCTATTGAACTGTGATCCAAC 58.990 43.478 0.00 0.00 0.00 3.77
8 9 4.299586 TGGCTATTGAACTGTGATCCAA 57.700 40.909 0.00 0.00 0.00 3.53
9 10 3.998913 TGGCTATTGAACTGTGATCCA 57.001 42.857 0.00 0.00 0.00 3.41
10 11 5.643379 TTTTGGCTATTGAACTGTGATCC 57.357 39.130 0.00 0.00 0.00 3.36
11 12 8.677300 TCTTATTTTGGCTATTGAACTGTGATC 58.323 33.333 0.00 0.00 0.00 2.92
12 13 8.579850 TCTTATTTTGGCTATTGAACTGTGAT 57.420 30.769 0.00 0.00 0.00 3.06
13 14 7.994425 TCTTATTTTGGCTATTGAACTGTGA 57.006 32.000 0.00 0.00 0.00 3.58
14 15 8.461222 TGATCTTATTTTGGCTATTGAACTGTG 58.539 33.333 0.00 0.00 0.00 3.66
15 16 8.579850 TGATCTTATTTTGGCTATTGAACTGT 57.420 30.769 0.00 0.00 0.00 3.55
16 17 9.859427 TTTGATCTTATTTTGGCTATTGAACTG 57.141 29.630 0.00 0.00 0.00 3.16
34 35 9.113838 AGATTGCAGTTTATCGTATTTGATCTT 57.886 29.630 0.00 0.00 0.00 2.40
35 36 8.668510 AGATTGCAGTTTATCGTATTTGATCT 57.331 30.769 0.00 0.00 0.00 2.75
128 129 5.880901 AGATCACCTCAAAGCCTAGAAAAA 58.119 37.500 0.00 0.00 0.00 1.94
129 130 5.491982 GAGATCACCTCAAAGCCTAGAAAA 58.508 41.667 0.00 0.00 41.58 2.29
130 131 5.091261 GAGATCACCTCAAAGCCTAGAAA 57.909 43.478 0.00 0.00 41.58 2.52
131 132 4.744795 GAGATCACCTCAAAGCCTAGAA 57.255 45.455 0.00 0.00 41.58 2.10
142 143 3.827008 TGCTAACCATGAGATCACCTC 57.173 47.619 0.00 0.00 42.30 3.85
143 144 4.445448 GGAATGCTAACCATGAGATCACCT 60.445 45.833 0.00 0.00 33.49 4.00
144 145 3.817647 GGAATGCTAACCATGAGATCACC 59.182 47.826 0.00 0.00 33.49 4.02
145 146 4.454678 TGGAATGCTAACCATGAGATCAC 58.545 43.478 0.00 0.00 33.49 3.06
146 147 4.776435 TGGAATGCTAACCATGAGATCA 57.224 40.909 0.00 0.00 33.49 2.92
147 148 6.263842 TGATTTGGAATGCTAACCATGAGATC 59.736 38.462 0.00 0.00 36.02 2.75
148 149 6.131264 TGATTTGGAATGCTAACCATGAGAT 58.869 36.000 0.00 0.00 36.02 2.75
149 150 5.508567 TGATTTGGAATGCTAACCATGAGA 58.491 37.500 0.00 0.00 36.02 3.27
150 151 5.840243 TGATTTGGAATGCTAACCATGAG 57.160 39.130 0.00 0.00 36.02 2.90
151 152 5.394443 GCTTGATTTGGAATGCTAACCATGA 60.394 40.000 0.00 0.00 36.02 3.07
152 153 4.807304 GCTTGATTTGGAATGCTAACCATG 59.193 41.667 0.00 0.00 36.02 3.66
153 154 4.713321 AGCTTGATTTGGAATGCTAACCAT 59.287 37.500 0.00 0.00 36.02 3.55
154 155 4.088634 AGCTTGATTTGGAATGCTAACCA 58.911 39.130 0.00 0.00 0.00 3.67
155 156 4.400567 AGAGCTTGATTTGGAATGCTAACC 59.599 41.667 0.00 0.00 0.00 2.85
156 157 5.356470 AGAGAGCTTGATTTGGAATGCTAAC 59.644 40.000 0.00 0.00 0.00 2.34
157 158 5.503927 AGAGAGCTTGATTTGGAATGCTAA 58.496 37.500 0.00 0.00 0.00 3.09
158 159 5.108187 AGAGAGCTTGATTTGGAATGCTA 57.892 39.130 0.00 0.00 0.00 3.49
159 160 3.965694 AGAGAGCTTGATTTGGAATGCT 58.034 40.909 0.00 0.00 0.00 3.79
160 161 5.824904 TTAGAGAGCTTGATTTGGAATGC 57.175 39.130 0.00 0.00 0.00 3.56
161 162 7.718753 AGGTATTAGAGAGCTTGATTTGGAATG 59.281 37.037 0.00 0.00 0.00 2.67
162 163 7.810260 AGGTATTAGAGAGCTTGATTTGGAAT 58.190 34.615 0.00 0.00 0.00 3.01
163 164 7.200434 AGGTATTAGAGAGCTTGATTTGGAA 57.800 36.000 0.00 0.00 0.00 3.53
164 165 6.814954 AGGTATTAGAGAGCTTGATTTGGA 57.185 37.500 0.00 0.00 0.00 3.53
165 166 7.442666 GGTTAGGTATTAGAGAGCTTGATTTGG 59.557 40.741 0.00 0.00 0.00 3.28
166 167 7.442666 GGGTTAGGTATTAGAGAGCTTGATTTG 59.557 40.741 0.00 0.00 0.00 2.32
167 168 7.127339 TGGGTTAGGTATTAGAGAGCTTGATTT 59.873 37.037 0.00 0.00 0.00 2.17
168 169 6.615726 TGGGTTAGGTATTAGAGAGCTTGATT 59.384 38.462 0.00 0.00 0.00 2.57
169 170 6.143915 TGGGTTAGGTATTAGAGAGCTTGAT 58.856 40.000 0.00 0.00 0.00 2.57
170 171 5.525484 TGGGTTAGGTATTAGAGAGCTTGA 58.475 41.667 0.00 0.00 0.00 3.02
171 172 5.871396 TGGGTTAGGTATTAGAGAGCTTG 57.129 43.478 0.00 0.00 0.00 4.01
172 173 5.130643 GGTTGGGTTAGGTATTAGAGAGCTT 59.869 44.000 0.00 0.00 0.00 3.74
173 174 4.654724 GGTTGGGTTAGGTATTAGAGAGCT 59.345 45.833 0.00 0.00 0.00 4.09
174 175 4.202336 GGGTTGGGTTAGGTATTAGAGAGC 60.202 50.000 0.00 0.00 0.00 4.09
175 176 4.347292 GGGGTTGGGTTAGGTATTAGAGAG 59.653 50.000 0.00 0.00 0.00 3.20
176 177 4.265400 TGGGGTTGGGTTAGGTATTAGAGA 60.265 45.833 0.00 0.00 0.00 3.10
177 178 4.042174 TGGGGTTGGGTTAGGTATTAGAG 58.958 47.826 0.00 0.00 0.00 2.43
178 179 4.091422 TGGGGTTGGGTTAGGTATTAGA 57.909 45.455 0.00 0.00 0.00 2.10
179 180 4.167307 ACATGGGGTTGGGTTAGGTATTAG 59.833 45.833 0.00 0.00 0.00 1.73
180 181 4.120681 ACATGGGGTTGGGTTAGGTATTA 58.879 43.478 0.00 0.00 0.00 0.98
181 182 2.930405 ACATGGGGTTGGGTTAGGTATT 59.070 45.455 0.00 0.00 0.00 1.89
182 183 2.580232 ACATGGGGTTGGGTTAGGTAT 58.420 47.619 0.00 0.00 0.00 2.73
183 184 2.062773 ACATGGGGTTGGGTTAGGTA 57.937 50.000 0.00 0.00 0.00 3.08
184 185 2.062773 TACATGGGGTTGGGTTAGGT 57.937 50.000 0.00 0.00 0.00 3.08
185 186 2.944129 CATACATGGGGTTGGGTTAGG 58.056 52.381 0.00 0.00 0.00 2.69
186 187 2.306847 GCATACATGGGGTTGGGTTAG 58.693 52.381 0.00 0.00 0.00 2.34
187 188 1.063567 GGCATACATGGGGTTGGGTTA 60.064 52.381 0.00 0.00 0.00 2.85
188 189 0.325203 GGCATACATGGGGTTGGGTT 60.325 55.000 0.00 0.00 0.00 4.11
189 190 1.309688 GGCATACATGGGGTTGGGT 59.690 57.895 0.00 0.00 0.00 4.51
190 191 1.457455 GGGCATACATGGGGTTGGG 60.457 63.158 0.00 0.00 0.00 4.12
191 192 0.105555 ATGGGCATACATGGGGTTGG 60.106 55.000 0.00 0.00 0.00 3.77
192 193 1.042229 CATGGGCATACATGGGGTTG 58.958 55.000 0.00 0.00 43.44 3.77
193 194 3.537455 CATGGGCATACATGGGGTT 57.463 52.632 0.00 0.00 43.44 4.11
199 200 7.346471 AGTTACTTCTAAACATGGGCATACAT 58.654 34.615 0.00 0.00 0.00 2.29
200 201 6.717289 AGTTACTTCTAAACATGGGCATACA 58.283 36.000 0.00 0.00 0.00 2.29
201 202 7.625828 AAGTTACTTCTAAACATGGGCATAC 57.374 36.000 0.00 0.00 0.00 2.39
202 203 7.668052 ACAAAGTTACTTCTAAACATGGGCATA 59.332 33.333 0.00 0.00 0.00 3.14
203 204 6.493458 ACAAAGTTACTTCTAAACATGGGCAT 59.507 34.615 0.00 0.00 0.00 4.40
204 205 5.830991 ACAAAGTTACTTCTAAACATGGGCA 59.169 36.000 0.00 0.00 0.00 5.36
205 206 6.327279 ACAAAGTTACTTCTAAACATGGGC 57.673 37.500 0.00 0.00 0.00 5.36
206 207 8.630037 AGAAACAAAGTTACTTCTAAACATGGG 58.370 33.333 0.00 0.00 0.00 4.00
272 273 9.435570 AGGATTAAGTTGTACTATATCAGTGGT 57.564 33.333 0.00 0.00 38.24 4.16
301 302 9.737427 CTCTCGTCCATATTAATTATCGCTAAT 57.263 33.333 0.00 0.00 0.00 1.73
302 303 8.188799 CCTCTCGTCCATATTAATTATCGCTAA 58.811 37.037 0.00 0.00 0.00 3.09
303 304 7.201794 CCCTCTCGTCCATATTAATTATCGCTA 60.202 40.741 0.00 0.00 0.00 4.26
304 305 6.405953 CCCTCTCGTCCATATTAATTATCGCT 60.406 42.308 0.00 0.00 0.00 4.93
305 306 5.749109 CCCTCTCGTCCATATTAATTATCGC 59.251 44.000 0.00 0.00 0.00 4.58
306 307 6.752351 CACCCTCTCGTCCATATTAATTATCG 59.248 42.308 0.00 0.00 0.00 2.92
307 308 7.612677 ACACCCTCTCGTCCATATTAATTATC 58.387 38.462 0.00 0.00 0.00 1.75
308 309 7.554959 ACACCCTCTCGTCCATATTAATTAT 57.445 36.000 0.00 0.00 0.00 1.28
309 310 6.989155 ACACCCTCTCGTCCATATTAATTA 57.011 37.500 0.00 0.00 0.00 1.40
310 311 5.888982 ACACCCTCTCGTCCATATTAATT 57.111 39.130 0.00 0.00 0.00 1.40
311 312 5.047235 GCTACACCCTCTCGTCCATATTAAT 60.047 44.000 0.00 0.00 0.00 1.40
312 313 4.280174 GCTACACCCTCTCGTCCATATTAA 59.720 45.833 0.00 0.00 0.00 1.40
313 314 3.825014 GCTACACCCTCTCGTCCATATTA 59.175 47.826 0.00 0.00 0.00 0.98
314 315 2.628657 GCTACACCCTCTCGTCCATATT 59.371 50.000 0.00 0.00 0.00 1.28
315 316 2.158445 AGCTACACCCTCTCGTCCATAT 60.158 50.000 0.00 0.00 0.00 1.78
316 317 1.214673 AGCTACACCCTCTCGTCCATA 59.785 52.381 0.00 0.00 0.00 2.74
317 318 0.033011 AGCTACACCCTCTCGTCCAT 60.033 55.000 0.00 0.00 0.00 3.41
318 319 0.251653 AAGCTACACCCTCTCGTCCA 60.252 55.000 0.00 0.00 0.00 4.02
319 320 0.896226 AAAGCTACACCCTCTCGTCC 59.104 55.000 0.00 0.00 0.00 4.79
320 321 2.745515 AAAAGCTACACCCTCTCGTC 57.254 50.000 0.00 0.00 0.00 4.20
321 322 4.504858 CAATAAAAGCTACACCCTCTCGT 58.495 43.478 0.00 0.00 0.00 4.18
322 323 3.871594 CCAATAAAAGCTACACCCTCTCG 59.128 47.826 0.00 0.00 0.00 4.04
323 324 3.628032 GCCAATAAAAGCTACACCCTCTC 59.372 47.826 0.00 0.00 0.00 3.20
324 325 3.267031 AGCCAATAAAAGCTACACCCTCT 59.733 43.478 0.00 0.00 37.64 3.69
325 326 3.621558 AGCCAATAAAAGCTACACCCTC 58.378 45.455 0.00 0.00 37.64 4.30
326 327 3.739401 AGCCAATAAAAGCTACACCCT 57.261 42.857 0.00 0.00 37.64 4.34
327 328 5.650703 TCTTAAGCCAATAAAAGCTACACCC 59.349 40.000 0.00 0.00 38.74 4.61
328 329 6.753107 TCTTAAGCCAATAAAAGCTACACC 57.247 37.500 0.00 0.00 38.74 4.16
342 343 9.998106 GACATCCTAGTTATATTTCTTAAGCCA 57.002 33.333 0.00 0.00 0.00 4.75
343 344 9.998106 TGACATCCTAGTTATATTTCTTAAGCC 57.002 33.333 0.00 0.00 0.00 4.35
356 357 9.653287 CTTGTATCTTTGTTGACATCCTAGTTA 57.347 33.333 0.00 0.00 0.00 2.24
357 358 8.375506 TCTTGTATCTTTGTTGACATCCTAGTT 58.624 33.333 0.00 0.00 0.00 2.24
358 359 7.907389 TCTTGTATCTTTGTTGACATCCTAGT 58.093 34.615 0.00 0.00 0.00 2.57
359 360 8.777865 TTCTTGTATCTTTGTTGACATCCTAG 57.222 34.615 0.00 0.00 0.00 3.02
360 361 8.999431 GTTTCTTGTATCTTTGTTGACATCCTA 58.001 33.333 0.00 0.00 0.00 2.94
361 362 7.307989 CGTTTCTTGTATCTTTGTTGACATCCT 60.308 37.037 0.00 0.00 0.00 3.24
362 363 6.797033 CGTTTCTTGTATCTTTGTTGACATCC 59.203 38.462 0.00 0.00 0.00 3.51
363 364 7.572759 TCGTTTCTTGTATCTTTGTTGACATC 58.427 34.615 0.00 0.00 0.00 3.06
364 365 7.490962 TCGTTTCTTGTATCTTTGTTGACAT 57.509 32.000 0.00 0.00 0.00 3.06
365 366 6.912203 TCGTTTCTTGTATCTTTGTTGACA 57.088 33.333 0.00 0.00 0.00 3.58
366 367 9.530129 CTATTCGTTTCTTGTATCTTTGTTGAC 57.470 33.333 0.00 0.00 0.00 3.18
367 368 9.483916 TCTATTCGTTTCTTGTATCTTTGTTGA 57.516 29.630 0.00 0.00 0.00 3.18
370 371 9.706691 TCTTCTATTCGTTTCTTGTATCTTTGT 57.293 29.630 0.00 0.00 0.00 2.83
419 420 8.838365 GCTCTTGAAGATGATAGAACATGAAAT 58.162 33.333 0.00 0.00 0.00 2.17
420 421 7.825761 TGCTCTTGAAGATGATAGAACATGAAA 59.174 33.333 0.00 0.00 0.00 2.69
421 422 7.333323 TGCTCTTGAAGATGATAGAACATGAA 58.667 34.615 0.00 0.00 0.00 2.57
422 423 6.881570 TGCTCTTGAAGATGATAGAACATGA 58.118 36.000 0.00 0.00 0.00 3.07
423 424 7.658167 AGATGCTCTTGAAGATGATAGAACATG 59.342 37.037 0.00 0.00 0.00 3.21
424 425 7.737869 AGATGCTCTTGAAGATGATAGAACAT 58.262 34.615 0.00 0.00 0.00 2.71
425 426 7.122138 AGATGCTCTTGAAGATGATAGAACA 57.878 36.000 0.00 0.00 0.00 3.18
426 427 8.140628 TGTAGATGCTCTTGAAGATGATAGAAC 58.859 37.037 0.00 0.00 0.00 3.01
427 428 8.242729 TGTAGATGCTCTTGAAGATGATAGAA 57.757 34.615 0.00 0.00 0.00 2.10
428 429 7.523544 GCTGTAGATGCTCTTGAAGATGATAGA 60.524 40.741 0.00 0.00 0.00 1.98
429 430 6.587226 GCTGTAGATGCTCTTGAAGATGATAG 59.413 42.308 0.00 0.00 0.00 2.08
430 431 6.453943 GCTGTAGATGCTCTTGAAGATGATA 58.546 40.000 0.00 0.00 0.00 2.15
431 432 5.299148 GCTGTAGATGCTCTTGAAGATGAT 58.701 41.667 0.00 0.00 0.00 2.45
432 433 4.442612 GGCTGTAGATGCTCTTGAAGATGA 60.443 45.833 0.00 0.00 0.00 2.92
433 434 3.808726 GGCTGTAGATGCTCTTGAAGATG 59.191 47.826 0.00 0.00 0.00 2.90
434 435 3.492309 CGGCTGTAGATGCTCTTGAAGAT 60.492 47.826 0.00 0.00 0.00 2.40
435 436 2.159184 CGGCTGTAGATGCTCTTGAAGA 60.159 50.000 0.00 0.00 0.00 2.87
436 437 2.200067 CGGCTGTAGATGCTCTTGAAG 58.800 52.381 0.00 0.00 0.00 3.02
437 438 1.134699 CCGGCTGTAGATGCTCTTGAA 60.135 52.381 0.00 0.00 0.00 2.69
438 439 0.461548 CCGGCTGTAGATGCTCTTGA 59.538 55.000 0.00 0.00 0.00 3.02
439 440 0.461548 TCCGGCTGTAGATGCTCTTG 59.538 55.000 0.00 0.00 0.00 3.02
440 441 1.069823 CATCCGGCTGTAGATGCTCTT 59.930 52.381 0.00 0.00 33.99 2.85
441 442 0.678395 CATCCGGCTGTAGATGCTCT 59.322 55.000 0.00 0.00 33.99 4.09
442 443 0.320247 CCATCCGGCTGTAGATGCTC 60.320 60.000 4.31 0.00 38.85 4.26
443 444 1.750930 CCATCCGGCTGTAGATGCT 59.249 57.895 4.31 0.00 38.85 3.79
444 445 1.302033 CCCATCCGGCTGTAGATGC 60.302 63.158 4.31 0.00 38.85 3.91
445 446 0.034059 GACCCATCCGGCTGTAGATG 59.966 60.000 4.31 5.13 39.69 2.90
446 447 1.122019 GGACCCATCCGGCTGTAGAT 61.122 60.000 4.31 0.00 34.48 1.98
447 448 1.760875 GGACCCATCCGGCTGTAGA 60.761 63.158 4.31 0.00 34.48 2.59
448 449 2.822399 GGACCCATCCGGCTGTAG 59.178 66.667 4.31 0.00 34.48 2.74
466 467 1.002430 GTCATGTCAGACTGAAGGGCA 59.998 52.381 6.76 1.05 35.65 5.36
467 468 1.731720 GTCATGTCAGACTGAAGGGC 58.268 55.000 6.76 0.00 35.65 5.19
468 469 1.404717 CCGTCATGTCAGACTGAAGGG 60.405 57.143 18.68 3.01 37.37 3.95
469 470 1.546029 TCCGTCATGTCAGACTGAAGG 59.454 52.381 19.62 19.62 40.90 3.46
470 471 2.600731 GTCCGTCATGTCAGACTGAAG 58.399 52.381 6.76 0.59 34.31 3.02
471 472 1.068541 CGTCCGTCATGTCAGACTGAA 60.069 52.381 6.76 0.00 34.31 3.02
472 473 0.521735 CGTCCGTCATGTCAGACTGA 59.478 55.000 0.00 0.00 36.38 3.41
473 474 1.073216 GCGTCCGTCATGTCAGACTG 61.073 60.000 1.31 0.00 36.38 3.51
474 475 1.213013 GCGTCCGTCATGTCAGACT 59.787 57.895 1.31 0.00 36.38 3.24
475 476 2.152699 CGCGTCCGTCATGTCAGAC 61.153 63.158 0.00 0.00 35.19 3.51
476 477 2.178273 CGCGTCCGTCATGTCAGA 59.822 61.111 0.00 0.00 0.00 3.27
477 478 2.126463 ACGCGTCCGTCATGTCAG 60.126 61.111 5.58 0.00 46.39 3.51
500 501 2.449031 TATAAGGAGGCATGGGCGCG 62.449 60.000 0.00 0.00 42.47 6.86
501 502 0.035056 ATATAAGGAGGCATGGGCGC 60.035 55.000 0.00 0.00 42.47 6.53
502 503 1.407437 GGATATAAGGAGGCATGGGCG 60.407 57.143 0.00 0.00 42.47 6.13
503 504 1.407437 CGGATATAAGGAGGCATGGGC 60.407 57.143 0.00 0.00 40.13 5.36
504 505 2.187958 TCGGATATAAGGAGGCATGGG 58.812 52.381 0.00 0.00 0.00 4.00
505 506 3.181461 GGATCGGATATAAGGAGGCATGG 60.181 52.174 0.00 0.00 0.00 3.66
506 507 3.452264 TGGATCGGATATAAGGAGGCATG 59.548 47.826 0.00 0.00 0.00 4.06
507 508 3.708631 CTGGATCGGATATAAGGAGGCAT 59.291 47.826 0.00 0.00 0.00 4.40
508 509 3.099905 CTGGATCGGATATAAGGAGGCA 58.900 50.000 0.00 0.00 0.00 4.75
509 510 3.366396 TCTGGATCGGATATAAGGAGGC 58.634 50.000 0.00 0.00 0.00 4.70
510 511 7.847711 AATATCTGGATCGGATATAAGGAGG 57.152 40.000 15.51 0.00 40.35 4.30
511 512 7.655328 GCAAATATCTGGATCGGATATAAGGAG 59.345 40.741 15.51 8.63 40.35 3.69
512 513 7.125659 TGCAAATATCTGGATCGGATATAAGGA 59.874 37.037 15.51 11.38 40.35 3.36
513 514 7.275183 TGCAAATATCTGGATCGGATATAAGG 58.725 38.462 15.51 11.09 40.35 2.69
514 515 7.440556 CCTGCAAATATCTGGATCGGATATAAG 59.559 40.741 15.51 12.89 40.35 1.73
515 516 7.125659 TCCTGCAAATATCTGGATCGGATATAA 59.874 37.037 15.51 6.25 40.35 0.98
516 517 6.611236 TCCTGCAAATATCTGGATCGGATATA 59.389 38.462 15.51 4.79 40.35 0.86
517 518 5.426509 TCCTGCAAATATCTGGATCGGATAT 59.573 40.000 11.61 11.61 42.27 1.63
518 519 4.777366 TCCTGCAAATATCTGGATCGGATA 59.223 41.667 8.72 8.72 36.35 2.59
519 520 3.584406 TCCTGCAAATATCTGGATCGGAT 59.416 43.478 0.00 0.00 33.63 4.18
520 521 2.972021 TCCTGCAAATATCTGGATCGGA 59.028 45.455 0.00 0.00 0.00 4.55
521 522 3.332919 CTCCTGCAAATATCTGGATCGG 58.667 50.000 0.00 0.00 32.32 4.18
522 523 3.332919 CCTCCTGCAAATATCTGGATCG 58.667 50.000 0.00 0.00 32.32 3.69
523 524 3.560882 CCCCTCCTGCAAATATCTGGATC 60.561 52.174 0.00 0.00 32.32 3.36
524 525 2.377869 CCCCTCCTGCAAATATCTGGAT 59.622 50.000 0.00 0.00 32.32 3.41
525 526 1.776667 CCCCTCCTGCAAATATCTGGA 59.223 52.381 0.00 0.00 0.00 3.86
526 527 1.202976 CCCCCTCCTGCAAATATCTGG 60.203 57.143 0.00 0.00 0.00 3.86
527 528 2.283145 CCCCCTCCTGCAAATATCTG 57.717 55.000 0.00 0.00 0.00 2.90
543 544 0.539669 CCCACTCACAAAGTTCCCCC 60.540 60.000 0.00 0.00 35.45 5.40
544 545 1.179174 GCCCACTCACAAAGTTCCCC 61.179 60.000 0.00 0.00 35.45 4.81
545 546 1.179174 GGCCCACTCACAAAGTTCCC 61.179 60.000 0.00 0.00 35.45 3.97
546 547 1.515521 CGGCCCACTCACAAAGTTCC 61.516 60.000 0.00 0.00 35.45 3.62
547 548 0.818040 ACGGCCCACTCACAAAGTTC 60.818 55.000 0.00 0.00 35.45 3.01
548 549 0.818040 GACGGCCCACTCACAAAGTT 60.818 55.000 0.00 0.00 35.45 2.66
549 550 1.227853 GACGGCCCACTCACAAAGT 60.228 57.895 0.00 0.00 39.44 2.66
550 551 1.966451 GGACGGCCCACTCACAAAG 60.966 63.158 0.00 0.00 34.14 2.77
551 552 2.112297 GGACGGCCCACTCACAAA 59.888 61.111 0.00 0.00 34.14 2.83
552 553 4.308458 CGGACGGCCCACTCACAA 62.308 66.667 0.00 0.00 34.14 3.33
554 555 4.736896 GACGGACGGCCCACTCAC 62.737 72.222 0.00 0.00 34.14 3.51
569 570 2.234913 AATGCCCACTACGTCCGGAC 62.235 60.000 25.28 25.28 0.00 4.79
570 571 1.546589 AAATGCCCACTACGTCCGGA 61.547 55.000 0.00 0.00 0.00 5.14
571 572 1.078708 AAATGCCCACTACGTCCGG 60.079 57.895 0.00 0.00 0.00 5.14
572 573 0.390603 TCAAATGCCCACTACGTCCG 60.391 55.000 0.00 0.00 0.00 4.79
573 574 1.737793 CTTCAAATGCCCACTACGTCC 59.262 52.381 0.00 0.00 0.00 4.79
574 575 1.130561 GCTTCAAATGCCCACTACGTC 59.869 52.381 0.00 0.00 0.00 4.34
575 576 1.165270 GCTTCAAATGCCCACTACGT 58.835 50.000 0.00 0.00 0.00 3.57
576 577 1.453155 AGCTTCAAATGCCCACTACG 58.547 50.000 0.00 0.00 0.00 3.51
577 578 5.368989 ACTATAGCTTCAAATGCCCACTAC 58.631 41.667 0.00 0.00 0.00 2.73
578 579 5.130311 TGACTATAGCTTCAAATGCCCACTA 59.870 40.000 0.00 0.00 0.00 2.74
579 580 4.080356 TGACTATAGCTTCAAATGCCCACT 60.080 41.667 0.00 0.00 0.00 4.00
580 581 4.199310 TGACTATAGCTTCAAATGCCCAC 58.801 43.478 0.00 0.00 0.00 4.61
581 582 4.502105 TGACTATAGCTTCAAATGCCCA 57.498 40.909 0.00 0.00 0.00 5.36
582 583 5.835113 TTTGACTATAGCTTCAAATGCCC 57.165 39.130 12.26 0.00 36.92 5.36
583 584 7.088589 TCTTTTGACTATAGCTTCAAATGCC 57.911 36.000 15.47 0.00 40.51 4.40
584 585 8.970691 TTTCTTTTGACTATAGCTTCAAATGC 57.029 30.769 15.47 0.00 40.51 3.56
610 611 5.758296 TCTGTTCGAGCATCTACAACTTTTT 59.242 36.000 1.26 0.00 29.14 1.94
611 612 5.297547 TCTGTTCGAGCATCTACAACTTTT 58.702 37.500 1.26 0.00 29.14 2.27
612 613 4.883083 TCTGTTCGAGCATCTACAACTTT 58.117 39.130 1.26 0.00 29.14 2.66
613 614 4.521130 TCTGTTCGAGCATCTACAACTT 57.479 40.909 1.26 0.00 29.14 2.66
614 615 4.727507 ATCTGTTCGAGCATCTACAACT 57.272 40.909 1.26 0.00 29.14 3.16
615 616 6.037098 ACTAATCTGTTCGAGCATCTACAAC 58.963 40.000 1.26 0.00 29.14 3.32
616 617 6.208988 ACTAATCTGTTCGAGCATCTACAA 57.791 37.500 1.26 0.00 29.14 2.41
617 618 5.836821 ACTAATCTGTTCGAGCATCTACA 57.163 39.130 1.26 0.00 0.00 2.74
618 619 7.192148 TCTACTAATCTGTTCGAGCATCTAC 57.808 40.000 1.26 0.00 0.00 2.59
619 620 7.987750 ATCTACTAATCTGTTCGAGCATCTA 57.012 36.000 1.26 0.00 0.00 1.98
620 621 6.892658 ATCTACTAATCTGTTCGAGCATCT 57.107 37.500 1.26 0.00 0.00 2.90
621 622 7.367285 AGAATCTACTAATCTGTTCGAGCATC 58.633 38.462 1.26 0.00 0.00 3.91
622 623 7.013750 TGAGAATCTACTAATCTGTTCGAGCAT 59.986 37.037 1.26 0.00 34.92 3.79
623 624 6.318900 TGAGAATCTACTAATCTGTTCGAGCA 59.681 38.462 0.88 0.88 34.92 4.26
624 625 6.730175 TGAGAATCTACTAATCTGTTCGAGC 58.270 40.000 0.00 0.00 34.92 5.03
625 626 8.148807 TCTGAGAATCTACTAATCTGTTCGAG 57.851 38.462 0.00 0.00 34.92 4.04
626 627 8.507524 TTCTGAGAATCTACTAATCTGTTCGA 57.492 34.615 0.00 0.00 34.92 3.71
627 628 9.232082 CTTTCTGAGAATCTACTAATCTGTTCG 57.768 37.037 0.00 0.00 34.92 3.95
637 638 9.693739 TCTACATCTTCTTTCTGAGAATCTACT 57.306 33.333 0.00 0.00 43.23 2.57
651 652 9.046296 CGGTTTGCTATTTATCTACATCTTCTT 57.954 33.333 0.00 0.00 0.00 2.52
652 653 7.657761 CCGGTTTGCTATTTATCTACATCTTCT 59.342 37.037 0.00 0.00 0.00 2.85
653 654 7.656137 TCCGGTTTGCTATTTATCTACATCTTC 59.344 37.037 0.00 0.00 0.00 2.87
654 655 7.506114 TCCGGTTTGCTATTTATCTACATCTT 58.494 34.615 0.00 0.00 0.00 2.40
655 656 7.062749 TCCGGTTTGCTATTTATCTACATCT 57.937 36.000 0.00 0.00 0.00 2.90
656 657 7.387948 ACATCCGGTTTGCTATTTATCTACATC 59.612 37.037 0.00 0.00 0.00 3.06
657 658 7.224297 ACATCCGGTTTGCTATTTATCTACAT 58.776 34.615 0.00 0.00 0.00 2.29
658 659 6.588204 ACATCCGGTTTGCTATTTATCTACA 58.412 36.000 0.00 0.00 0.00 2.74
659 660 7.492352 AACATCCGGTTTGCTATTTATCTAC 57.508 36.000 0.00 0.00 35.82 2.59
673 674 3.433306 TTGAGATCCAAACATCCGGTT 57.567 42.857 0.00 0.00 42.98 4.44
674 675 3.433306 TTTGAGATCCAAACATCCGGT 57.567 42.857 0.00 0.00 39.65 5.28
675 676 4.989279 AATTTGAGATCCAAACATCCGG 57.011 40.909 10.37 0.00 46.41 5.14
676 677 7.433131 CACATAAATTTGAGATCCAAACATCCG 59.567 37.037 10.37 4.60 46.41 4.18
677 678 8.469200 TCACATAAATTTGAGATCCAAACATCC 58.531 33.333 10.37 0.00 46.41 3.51
678 679 9.512435 CTCACATAAATTTGAGATCCAAACATC 57.488 33.333 10.37 0.00 46.41 3.06
679 680 9.028284 ACTCACATAAATTTGAGATCCAAACAT 57.972 29.630 11.98 6.46 46.41 2.71
680 681 8.298854 CACTCACATAAATTTGAGATCCAAACA 58.701 33.333 11.98 2.45 46.41 2.83
681 682 7.756722 CCACTCACATAAATTTGAGATCCAAAC 59.243 37.037 11.98 0.00 46.41 2.93
683 684 7.174413 TCCACTCACATAAATTTGAGATCCAA 58.826 34.615 11.98 0.00 41.65 3.53
684 685 6.720309 TCCACTCACATAAATTTGAGATCCA 58.280 36.000 11.98 0.00 41.65 3.41
685 686 7.500227 TGATCCACTCACATAAATTTGAGATCC 59.500 37.037 11.98 0.13 41.65 3.36
686 687 8.442632 TGATCCACTCACATAAATTTGAGATC 57.557 34.615 11.98 6.53 41.65 2.75
701 702 3.648067 AGAAAACTCCTGTGATCCACTCA 59.352 43.478 0.00 0.00 35.11 3.41
702 703 4.278975 AGAAAACTCCTGTGATCCACTC 57.721 45.455 0.00 0.00 35.11 3.51
703 704 4.392940 CAAGAAAACTCCTGTGATCCACT 58.607 43.478 0.00 0.00 35.11 4.00
704 705 3.057946 GCAAGAAAACTCCTGTGATCCAC 60.058 47.826 0.00 0.00 34.56 4.02
705 706 3.149196 GCAAGAAAACTCCTGTGATCCA 58.851 45.455 0.00 0.00 0.00 3.41
706 707 3.416156 AGCAAGAAAACTCCTGTGATCC 58.584 45.455 0.00 0.00 0.00 3.36
707 708 6.560253 TTAAGCAAGAAAACTCCTGTGATC 57.440 37.500 0.00 0.00 0.00 2.92
708 709 7.530426 AATTAAGCAAGAAAACTCCTGTGAT 57.470 32.000 0.00 0.00 0.00 3.06
709 710 6.959639 AATTAAGCAAGAAAACTCCTGTGA 57.040 33.333 0.00 0.00 0.00 3.58
710 711 6.797033 CGTAATTAAGCAAGAAAACTCCTGTG 59.203 38.462 0.00 0.00 0.00 3.66
711 712 6.485648 ACGTAATTAAGCAAGAAAACTCCTGT 59.514 34.615 0.00 0.00 0.00 4.00
712 713 6.899114 ACGTAATTAAGCAAGAAAACTCCTG 58.101 36.000 0.00 0.00 0.00 3.86
713 714 7.360361 CAACGTAATTAAGCAAGAAAACTCCT 58.640 34.615 0.00 0.00 0.00 3.69
714 715 6.087687 GCAACGTAATTAAGCAAGAAAACTCC 59.912 38.462 0.00 0.00 0.00 3.85
715 716 6.856426 AGCAACGTAATTAAGCAAGAAAACTC 59.144 34.615 0.00 0.00 0.00 3.01
716 717 6.636850 CAGCAACGTAATTAAGCAAGAAAACT 59.363 34.615 0.00 0.00 0.00 2.66
717 718 6.613536 GCAGCAACGTAATTAAGCAAGAAAAC 60.614 38.462 0.00 0.00 0.00 2.43
718 719 5.401079 GCAGCAACGTAATTAAGCAAGAAAA 59.599 36.000 0.00 0.00 0.00 2.29
719 720 4.915085 GCAGCAACGTAATTAAGCAAGAAA 59.085 37.500 0.00 0.00 0.00 2.52
720 721 4.472286 GCAGCAACGTAATTAAGCAAGAA 58.528 39.130 0.00 0.00 0.00 2.52
721 722 3.119990 GGCAGCAACGTAATTAAGCAAGA 60.120 43.478 0.00 0.00 0.00 3.02
735 736 0.179156 CCACATCATTCGGCAGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
758 759 2.125106 GGGCAGTTGAGGGCGTAG 60.125 66.667 0.00 0.00 0.00 3.51
801 805 2.123982 GGCTGGCTGCTATGGCTT 60.124 61.111 16.14 0.00 42.39 4.35
848 856 2.661979 GCGGTGTGTCGTTTCTTTCATC 60.662 50.000 0.00 0.00 0.00 2.92
885 897 2.353323 GTGGATCTCCGGGTTTTGTAC 58.647 52.381 0.00 0.00 39.43 2.90
886 898 1.279846 GGTGGATCTCCGGGTTTTGTA 59.720 52.381 0.00 0.00 39.43 2.41
887 899 0.037734 GGTGGATCTCCGGGTTTTGT 59.962 55.000 0.00 0.00 39.43 2.83
888 900 1.024579 CGGTGGATCTCCGGGTTTTG 61.025 60.000 17.56 0.00 43.68 2.44
916 928 3.652274 CGGGTGAATGATTGTTTTTGCT 58.348 40.909 0.00 0.00 0.00 3.91
917 929 2.157474 GCGGGTGAATGATTGTTTTTGC 59.843 45.455 0.00 0.00 0.00 3.68
919 931 2.671596 CGCGGGTGAATGATTGTTTTT 58.328 42.857 0.00 0.00 0.00 1.94
941 959 4.297891 CAGCGTGTGTGTGCGTGG 62.298 66.667 0.00 0.00 35.87 4.94
1058 1080 4.640855 CGACACACCGGAGCACGT 62.641 66.667 9.46 0.00 42.24 4.49
1293 1324 2.037367 AGGTAGGCGAGGCACTGA 59.963 61.111 0.00 0.00 41.55 3.41
1468 1499 2.022129 CGGTGTCGTTGGAGCAGAC 61.022 63.158 0.00 0.00 35.61 3.51
1829 1869 2.357327 TTACGACCGAGAATGTGTGG 57.643 50.000 0.00 0.00 0.00 4.17
1966 2057 9.650539 CAGAAGAAGAAGAAGAAAGATGTCATA 57.349 33.333 0.00 0.00 0.00 2.15
1977 2068 9.610705 CATGGATAATTCAGAAGAAGAAGAAGA 57.389 33.333 0.00 0.00 37.14 2.87
1978 2069 8.838365 CCATGGATAATTCAGAAGAAGAAGAAG 58.162 37.037 5.56 0.00 37.14 2.85
2124 2222 4.757502 GCGGTTGCAATTTTACAGTTTTC 58.242 39.130 0.59 0.00 42.15 2.29
2145 2243 5.121925 CAGCATCAGATATTCAGGTGTATGC 59.878 44.000 0.00 0.00 37.94 3.14
2151 2249 3.136077 AGTGCAGCATCAGATATTCAGGT 59.864 43.478 0.00 0.00 0.00 4.00
2152 2250 3.741249 AGTGCAGCATCAGATATTCAGG 58.259 45.455 0.00 0.00 0.00 3.86
2248 2355 4.742201 GGAAGCCGAGCTGCGACA 62.742 66.667 0.00 0.00 44.57 4.35
2362 2477 1.327303 ATGCGTGGTGTTCCAAATGT 58.673 45.000 0.00 0.00 46.15 2.71
2416 2532 5.924825 AGATGAAGCAAGCATTTCAAGAAAC 59.075 36.000 0.00 0.00 36.93 2.78
2775 2899 2.480419 AGCGTCTGCATCAACAAAGTAC 59.520 45.455 0.00 0.00 46.23 2.73
2777 2901 1.597742 AGCGTCTGCATCAACAAAGT 58.402 45.000 0.00 0.00 46.23 2.66
2779 2903 2.357323 TGAAAGCGTCTGCATCAACAAA 59.643 40.909 0.00 0.00 46.23 2.83
2802 2926 1.164041 CCCAGTCCAACGCGTTCTTT 61.164 55.000 23.92 5.21 0.00 2.52
3015 3142 4.460263 AGTGAACTTACAATGTTCCTGCA 58.540 39.130 0.00 0.00 42.04 4.41
3018 3145 5.531287 GGACAAGTGAACTTACAATGTTCCT 59.469 40.000 0.00 0.00 42.04 3.36
3044 3172 8.511604 TCAACCCTTGATCAGATTAGATTTTC 57.488 34.615 0.00 0.00 34.08 2.29
3047 3175 7.865820 TCTTCAACCCTTGATCAGATTAGATT 58.134 34.615 0.00 0.00 39.84 2.40
3079 3241 3.510719 ACACATTGCACAATTTATCGCC 58.489 40.909 0.00 0.00 0.00 5.54
3113 3277 4.883585 ACAAATGTAGGCATATGGTCAGTG 59.116 41.667 4.56 0.00 34.39 3.66
3121 3285 3.633525 CCACTGCACAAATGTAGGCATAT 59.366 43.478 0.00 0.00 42.48 1.78
3122 3286 3.016031 CCACTGCACAAATGTAGGCATA 58.984 45.455 0.00 0.00 42.48 3.14
3135 3299 1.614317 GGGGCCATATATCCACTGCAC 60.614 57.143 4.39 0.00 0.00 4.57
3153 3317 0.028505 CGTGTACGATGTACTCCGGG 59.971 60.000 0.00 0.00 43.02 5.73
3409 3579 1.694048 GGGTCCAGGATCTCCATCAGT 60.694 57.143 0.00 0.00 38.89 3.41
3726 3900 1.139853 AGATGATCCTTCACGCCCTTC 59.860 52.381 0.00 0.00 33.85 3.46
3727 3901 1.207791 AGATGATCCTTCACGCCCTT 58.792 50.000 0.00 0.00 33.85 3.95
3847 4021 3.084786 ACAAAGCTAACATTCCTCTGGC 58.915 45.455 0.00 0.00 0.00 4.85
3915 4090 5.179555 AGACGACTTTCAGTTGATTTTAGCC 59.820 40.000 0.00 0.00 33.76 3.93
3990 4165 8.966868 TGACTTTTTCCTCTGTTTTATCTGTTT 58.033 29.630 0.00 0.00 0.00 2.83
3992 4167 7.229506 CCTGACTTTTTCCTCTGTTTTATCTGT 59.770 37.037 0.00 0.00 0.00 3.41
4002 4177 5.048434 GTGAATTCCCTGACTTTTTCCTCTG 60.048 44.000 2.27 0.00 0.00 3.35
4033 4210 6.961554 TGTTTGTTTGTTTGTTGTGTTTTGTC 59.038 30.769 0.00 0.00 0.00 3.18
4086 4263 5.297776 GTCCATCACCTAGACCAAAATCATG 59.702 44.000 0.00 0.00 0.00 3.07
4202 4382 1.153349 GCCGGTCCATCTCAGTTCC 60.153 63.158 1.90 0.00 0.00 3.62
4225 4405 2.493278 CCCAACGATTTTCCAGCAGAAT 59.507 45.455 0.00 0.00 33.44 2.40
4240 4420 2.032634 ATGCGTACACAGCCCAACG 61.033 57.895 0.00 0.00 38.34 4.10
4254 4434 3.126879 ACATCCACACCGCATGCG 61.127 61.111 32.60 32.60 39.44 4.73
4260 4440 1.375908 CCAGACCACATCCACACCG 60.376 63.158 0.00 0.00 0.00 4.94
4309 4490 1.899814 TCACCCGTTCTCAGCTGTAAT 59.100 47.619 14.67 0.00 0.00 1.89
4314 4495 1.004440 GCTTCACCCGTTCTCAGCT 60.004 57.895 0.00 0.00 0.00 4.24
4434 4627 7.649705 CGTGTCTAAAGAGAATACTGCATACAT 59.350 37.037 0.00 0.00 31.96 2.29
4454 4647 2.954318 ACCGGCAAGTATATACGTGTCT 59.046 45.455 24.44 9.71 37.98 3.41
4465 4658 0.179043 TTTCAGCACACCGGCAAGTA 60.179 50.000 0.00 0.00 35.83 2.24
4466 4659 0.823356 ATTTCAGCACACCGGCAAGT 60.823 50.000 0.00 0.00 35.83 3.16
4538 4733 0.706433 AGAGCCATGGTCCCACATTT 59.294 50.000 14.67 0.00 0.00 2.32
4539 4734 0.033796 CAGAGCCATGGTCCCACATT 60.034 55.000 14.67 0.00 0.00 2.71
4540 4735 1.611419 CAGAGCCATGGTCCCACAT 59.389 57.895 14.67 0.00 0.00 3.21
4541 4736 3.080641 CAGAGCCATGGTCCCACA 58.919 61.111 14.67 0.00 0.00 4.17
4556 4751 0.391528 TGTCGGTCCATCATGTGCAG 60.392 55.000 0.00 0.00 0.00 4.41
4589 4785 4.469227 TGTATAAAGCGGGGTGTAAACCTA 59.531 41.667 1.05 0.00 0.00 3.08
4596 4792 5.125900 GGTTTTTATGTATAAAGCGGGGTGT 59.874 40.000 0.00 0.00 34.13 4.16
4598 4794 5.262804 TGGTTTTTATGTATAAAGCGGGGT 58.737 37.500 0.00 0.00 35.19 4.95
4611 4810 9.800433 TGTTGCATAGATATGTTGGTTTTTATG 57.200 29.630 0.00 0.00 36.11 1.90
4618 4817 6.658816 TCAACTTGTTGCATAGATATGTTGGT 59.341 34.615 8.48 0.00 36.11 3.67
4619 4818 7.087409 TCAACTTGTTGCATAGATATGTTGG 57.913 36.000 8.48 0.00 36.11 3.77
4620 4819 8.239314 ACTTCAACTTGTTGCATAGATATGTTG 58.761 33.333 8.48 0.00 36.11 3.33
4621 4820 8.340618 ACTTCAACTTGTTGCATAGATATGTT 57.659 30.769 8.48 0.00 36.11 2.71
4626 4827 6.149474 GTGGTACTTCAACTTGTTGCATAGAT 59.851 38.462 8.48 1.79 0.00 1.98
4642 4843 9.269453 ACTACTTAATTTTCAGTGTGGTACTTC 57.731 33.333 0.00 0.00 37.60 3.01
4661 4862 3.392066 TGCCCCAGCAGACTACTTA 57.608 52.632 0.00 0.00 46.52 2.24
4662 4863 4.232905 TGCCCCAGCAGACTACTT 57.767 55.556 0.00 0.00 46.52 2.24
4677 4878 1.202510 TGGGCATGTTTGAGTTGTTGC 60.203 47.619 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.